AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1445530


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1445530 MtrunA17_Chr8g0355721 92.308 156 12 0 1 156 1 156 1.25e-105 298
Msa1445530 MtrunA17_Chr8g0355741 81.529 157 28 1 1 156 1 157 4.31e-93 266
Msa1445530 MtrunA17_Chr8g0355661 78.344 157 32 2 1 156 1 156 2.44e-88 254
Msa1445530 MtrunA17_Chr8g0355781 76.316 152 36 0 1 152 1 152 1.38e-86 250
Msa1445530 MtrunA17_Chr8g0355811 74.510 153 38 1 1 153 1 152 8.06e-84 243
Msa1445530 MtrunA17_Chr8g0355761 75.000 152 38 0 1 152 1 152 1.12e-83 242
Msa1445530 MtrunA17_Chr8g0355641 69.872 156 46 1 1 155 1 156 9.29e-81 235
Msa1445530 MtrunA17_Chr8g0355821 70.588 153 44 1 1 153 1 152 5.55e-80 233
Msa1445530 MtrunA17_Chr8g0355801 70.588 153 44 1 1 153 1 152 3.90e-78 228
Msa1445530 MtrunA17_Chr8g0355791 69.281 153 46 1 1 153 1 152 4.48e-76 223
Msa1445530 MtrunA17_Chr8g0355771 67.974 153 48 1 1 153 1 152 8.82e-75 220
Msa1445530 MtrunA17_Chr1g0160371 43.137 153 84 2 1 151 1 152 1.01e-40 134
Msa1445530 MtrunA17_Chr1g0160381 40.523 153 88 2 1 151 5 156 2.38e-40 133
Msa1445530 MtrunA17_Chr1g0160391 37.179 156 90 4 1 149 1 155 3.60e-29 104
Msa1445530 MtrunA17_Chr8g0339261 35.616 146 91 3 6 150 8 151 1.23e-28 103
Msa1445530 MtrunA17_Chr1g0160801 38.514 148 82 5 7 152 7 147 4.09e-26 96.7
Msa1445530 MtrunA17_Chr1g0160351 45.161 93 49 1 61 151 1 93 1.26e-22 85.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1445530 AT5G28010.1 36.242 149 92 3 3 149 15 162 7.27e-27 99.4
Msa1445530 AT5G28010.2 36.242 149 92 3 3 149 15 162 7.27e-27 99.4
Msa1445530 AT1G70890.1 37.584 149 90 3 3 149 7 154 2.79e-26 97.8
Msa1445530 AT1G70830.5 34.899 149 94 3 3 149 22 169 5.49e-24 92.0
Msa1445530 AT1G70830.3 34.899 149 94 3 3 149 22 169 1.02e-23 92.4
Msa1445530 AT1G70840.1 32.886 149 97 3 3 149 20 167 2.33e-23 90.5
Msa1445530 AT1G70830.2 34.899 149 94 3 3 149 22 169 3.61e-23 92.0
Msa1445530 AT5G28000.1 32.886 149 97 3 3 149 13 160 9.62e-23 88.6
Msa1445530 AT1G70830.1 34.899 149 94 3 3 149 22 169 9.92e-23 92.4
Msa1445530 AT1G70830.1 33.557 149 96 3 3 149 184 331 3.60e-21 88.2
Msa1445530 AT1G70870.1 35.948 153 81 4 1 151 1 138 8.70e-22 85.5
Msa1445530 AT1G70830.4 33.557 149 96 3 3 149 137 284 1.31e-21 88.6
Msa1445530 AT1G70830.4 30.435 92 63 1 59 149 31 122 6.47e-11 59.3
Msa1445530 AT1G70850.2 32.886 149 97 3 3 149 9 156 1.67e-21 87.4
Msa1445530 AT1G23120.1 30.769 143 94 3 7 149 7 144 4.42e-21 84.0
Msa1445530 AT1G70850.3 32.886 149 97 3 3 149 9 156 4.71e-21 87.4
Msa1445530 AT1G70850.3 33.094 139 90 3 13 149 175 312 9.05e-20 84.0
Msa1445530 AT1G70850.1 32.886 149 97 3 3 149 9 156 4.71e-21 87.4
Msa1445530 AT1G70850.1 33.094 139 90 3 13 149 175 312 9.05e-20 84.0
Msa1445530 AT4G23670.1 34.641 153 97 3 1 152 1 151 7.56e-21 83.6
Msa1445530 AT1G23130.1 30.405 148 101 2 3 149 10 156 1.21e-20 83.2
Msa1445530 AT1G23120.2 30.769 143 94 3 7 149 57 194 1.30e-20 84.0
Msa1445530 AT1G70880.1 30.872 149 100 3 3 149 8 155 5.31e-20 81.6
Msa1445530 AT2G01520.1 32.026 153 101 3 1 152 1 151 7.42e-19 78.2
Msa1445530 AT4G23680.1 32.026 153 101 3 1 152 1 151 2.92e-18 76.6
Msa1445530 AT1G14930.1 32.298 161 92 5 1 153 1 152 1.15e-17 75.5
Msa1445530 AT2G01530.1 32.026 153 101 3 1 152 1 151 2.27e-17 74.3
Msa1445530 AT4G14060.1 32.680 153 100 3 1 152 1 151 2.86e-17 74.3
Msa1445530 AT1G35260.1 28.966 145 99 3 7 149 6 148 3.74e-17 73.9
Msa1445530 AT1G24020.1 32.692 156 103 2 1 155 1 155 5.09e-16 71.2
Msa1445530 AT1G24020.2 32.692 156 103 2 1 155 1 155 5.09e-16 71.2
Msa1445530 AT1G30990.1 32.000 150 98 4 1 149 1 147 2.18e-15 69.3
Msa1445530 AT1G14940.1 30.000 150 102 3 1 149 1 148 3.75e-14 66.2
Msa1445530 AT3G26460.1 32.051 156 98 5 1 152 1 152 8.39e-14 65.1
Msa1445530 AT1G14950.1 28.947 152 105 3 1 151 1 150 1.37e-13 64.7
Msa1445530 AT1G35310.1 25.362 138 100 3 13 149 12 147 2.00e-12 61.6
Msa1445530 AT1G14960.1 28.571 154 107 3 1 153 1 152 8.49e-12 60.1
Msa1445530 AT3G26450.1 27.273 154 108 4 1 152 1 152 2.96e-11 58.5

Find 41 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGGCACTGCTGCTGCTAAA+TGG 0.310932 tig0031137:-41468 Msa1445530:CDS
CTTCCCTTTCTTCTAAGAAA+TGG 0.349077 tig0031137:-42590 Msa1445530:exon
TATGTGATGAAATCAATAAA+TGG 0.369456 tig0031137:-41135 Msa1445530:three_prime_UTR
CACCCTTATCAATGACTTCA+AGG 0.380806 tig0031137:+41491 None:intergenic
TTATAGAGCTATCTTTGCTT+TGG 0.392094 tig0031137:+41348 None:intergenic
AATTAGTGTGATATTTGTAA+TGG 0.409729 tig0031137:-41251 Msa1445530:three_prime_UTR
ATATTGTTGCATATGCATAT+TGG 0.412178 tig0031137:-41227 Msa1445530:three_prime_UTR
TAGTAATGGGTTATTGCATT+GGG 0.416848 tig0031137:-41301 Msa1445530:three_prime_UTR
TGTAACAAATAACTAGTAAT+GGG 0.422186 tig0031137:-41314 Msa1445530:three_prime_UTR
AGCACCATTTCTTAGAAGAA+AGG 0.435379 tig0031137:+42586 None:intergenic
AAACACTGGACTTACGTCAT+AGG 0.436108 tig0031137:-42406 Msa1445530:intron
TTCTAAGAAATGGTGCTCTC+TGG 0.436928 tig0031137:-42580 Msa1445530:exon
CATCCTTGAAGTCATTGATA+AGG 0.445764 tig0031137:-41494 Msa1445530:CDS
AAGTATTCCATGTAGCCATT+TGG 0.448595 tig0031137:+41406 None:intergenic
CTTCTATGTGATGTTTGTAA+TGG 0.450639 tig0031137:-41204 Msa1445530:three_prime_UTR
CTAGTAATGGGTTATTGCAT+TGG 0.451009 tig0031137:-41302 Msa1445530:three_prime_UTR
AACACTTATAAGCTCTTTGG+TGG 0.457999 tig0031137:-41550 Msa1445530:CDS
GCACCATTTCTTAGAAGAAA+GGG 0.460369 tig0031137:+42587 None:intergenic
ATGTAACAAATAACTAGTAA+TGG 0.468583 tig0031137:-41315 Msa1445530:three_prime_UTR
AACTTCATGAAGGTGAAGAT+TGG 0.478377 tig0031137:-42447 Msa1445530:CDS
GGTAAGCTCAGTACTGAAGT+TGG 0.490802 tig0031137:-42559 Msa1445530:CDS
AATGGGTTATTGCATTGGGT+TGG 0.493837 tig0031137:-41297 Msa1445530:three_prime_UTR
ATCCTTGAAGTCATTGATAA+GGG 0.494628 tig0031137:-41493 Msa1445530:CDS
AGATATTGATGAGCACTATA+AGG 0.500590 tig0031137:-41527 Msa1445530:CDS
GAACAGATTGTAGAACTTGT+CGG 0.501167 tig0031137:+42522 None:intergenic
TATTCCATGTAGCCATTTGG+AGG 0.517921 tig0031137:+41409 None:intergenic
AGATTGGCATCACACTGATT+CGG 0.519723 tig0031137:-42431 Msa1445530:CDS
AATGGCTACATGGAATACTT+TGG 0.525683 tig0031137:-41403 Msa1445530:CDS
TGACCCTCCAAATGGCTACA+TGG 0.526835 tig0031137:-41413 Msa1445530:CDS
GAGGATATTGACCCTCCAAA+TGG 0.540200 tig0031137:-41421 Msa1445530:CDS
TATGATGAACTCTTTCACAA+AGG 0.552779 tig0031137:+42473 None:intergenic
ACACTTTCATCAACTCACAT+AGG 0.573859 tig0031137:-42631 None:intergenic
GAAGTCATTGATAAGGGTGA+TGG 0.579318 tig0031137:-41487 Msa1445530:CDS
ATCATAATTCACAGATGGCA+AGG 0.582682 tig0031137:-41623 Msa1445530:intron
CATCATACAAAACTTCATGA+AGG 0.606616 tig0031137:-42457 Msa1445530:CDS
ACACTGATTCGGTTAAACAC+TGG 0.614381 tig0031137:-42420 Msa1445530:CDS
ATTCCATGTAGCCATTTGGA+GGG 0.625101 tig0031137:+41410 None:intergenic
AGATTGTAGAACTTGTCGGC+GGG 0.646397 tig0031137:+42526 None:intergenic
TGAATATGAAAAGATCAATG+AGG 0.667026 tig0031137:-41440 Msa1445530:CDS
CAGATTGTAGAACTTGTCGG+CGG 0.688816 tig0031137:+42525 None:intergenic
AGTGTGATGTCTGTACATGA+CGG 0.731855 tig0031137:-41177 Msa1445530:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGGAATAATAAATATTTATA+AGG + tig0031137:41961-41980 None:intergenic 10.0%
!!! ATAGTTTATTTGTTAAAAAA+TGG - tig0031137:42025-42044 Msa1445530:intron 10.0%
!!! TAGTTTATTTGTTAAAAAAT+GGG - tig0031137:42026-42045 Msa1445530:intron 10.0%
!! AGGAATAATAAATATTTATA+AGG + tig0031137:41961-41980 None:intergenic 10.0%
!!! ATAGTTTATTTGTTAAAAAA+TGG - tig0031137:42025-42044 Msa1445530:intron 10.0%
!!! TAGTTTATTTGTTAAAAAAT+GGG - tig0031137:42026-42045 Msa1445530:intron 10.0%
!! AATTAAATAAGATGATGATT+TGG + tig0031137:41395-41414 None:intergenic 15.0%
!! AAAAAAAATCAACAATCATT+TGG - tig0031137:41719-41738 Msa1445530:intron 15.0%
!! AAAAAAATCAACAATCATTT+GGG - tig0031137:41720-41739 Msa1445530:intron 15.0%
!! ACAAATAAAAATGAAAACTT+TGG + tig0031137:42080-42099 None:intergenic 15.0%
!! AATTAAATAAGATGATGATT+TGG + tig0031137:41395-41414 None:intergenic 15.0%
!! AAAAAAAATCAACAATCATT+TGG - tig0031137:41719-41738 Msa1445530:intron 15.0%
!! AAAAAAATCAACAATCATTT+GGG - tig0031137:41720-41739 Msa1445530:intron 15.0%
!! ACAAATAAAAATGAAAACTT+TGG + tig0031137:42080-42099 None:intergenic 15.0%
!!! TGTTGATTTTTTTTGTCATA+AGG + tig0031137:41713-41732 None:intergenic 20.0%
!! ATGTAACAAATAACTAGTAA+TGG - tig0031137:42424-42443 Msa1445530:CDS 20.0%
!! TGTAACAAATAACTAGTAAT+GGG - tig0031137:42425-42444 Msa1445530:CDS 20.0%
!! AATTAGTGTGATATTTGTAA+TGG - tig0031137:42488-42507 Msa1445530:CDS 20.0%
!! TATGTGATGAAATCAATAAA+TGG - tig0031137:42604-42623 Msa1445530:five_prime_UTR 20.0%
!!! TGTTGATTTTTTTTGTCATA+AGG + tig0031137:41713-41732 None:intergenic 20.0%
!! ATGTAACAAATAACTAGTAA+TGG - tig0031137:42424-42443 Msa1445530:CDS 20.0%
!! TGTAACAAATAACTAGTAAT+GGG - tig0031137:42425-42444 Msa1445530:CDS 20.0%
!! AATTAGTGTGATATTTGTAA+TGG - tig0031137:42488-42507 Msa1445530:CDS 20.0%
!! TATGTGATGAAATCAATAAA+TGG - tig0031137:42604-42623 Msa1445530:five_prime_UTR 20.0%
! ATAAGAAAGAAACAAGTACA+TGG - tig0031137:41500-41519 Msa1445530:CDS 25.0%
! TTGGGAAGAAAAAAAAATCA+GGG + tig0031137:41583-41602 None:intergenic 25.0%
! TTTGGGAAGAAAAAAAAATC+AGG + tig0031137:41584-41603 None:intergenic 25.0%
!! CTATCTTGAAAATGGTTTTT+GGG + tig0031137:41601-41620 None:intergenic 25.0%
!! TCTATCTTGAAAATGGTTTT+TGG + tig0031137:41602-41621 None:intergenic 25.0%
! AGATTATGAGATCTCAAAAA+TGG - tig0031137:41816-41835 Msa1445530:intron 25.0%
!! AAACCACAGTTTTCTTTATA+TGG + tig0031137:41937-41956 None:intergenic 25.0%
! AAAAACACTTATAAGCTCTT+TGG - tig0031137:42186-42205 Msa1445530:intron 25.0%
! TGAATATGAAAAGATCAATG+AGG - tig0031137:42299-42318 Msa1445530:intron 25.0%
! ATATTGTTGCATATGCATAT+TGG - tig0031137:42512-42531 Msa1445530:CDS 25.0%
! ATAAGAAAGAAACAAGTACA+TGG - tig0031137:41500-41519 Msa1445530:CDS 25.0%
! TTGGGAAGAAAAAAAAATCA+GGG + tig0031137:41583-41602 None:intergenic 25.0%
! TTTGGGAAGAAAAAAAAATC+AGG + tig0031137:41584-41603 None:intergenic 25.0%
!! CTATCTTGAAAATGGTTTTT+GGG + tig0031137:41601-41620 None:intergenic 25.0%
!! TCTATCTTGAAAATGGTTTT+TGG + tig0031137:41602-41621 None:intergenic 25.0%
! AGATTATGAGATCTCAAAAA+TGG - tig0031137:41816-41835 Msa1445530:intron 25.0%
!! AAACCACAGTTTTCTTTATA+TGG + tig0031137:41937-41956 None:intergenic 25.0%
! AAAAACACTTATAAGCTCTT+TGG - tig0031137:42186-42205 Msa1445530:intron 25.0%
! TGAATATGAAAAGATCAATG+AGG - tig0031137:42299-42318 Msa1445530:intron 25.0%
! ATATTGTTGCATATGCATAT+TGG - tig0031137:42512-42531 Msa1445530:CDS 25.0%
TATGATGAACTCTTTCACAA+AGG + tig0031137:41269-41288 None:intergenic 30.0%
CATCATACAAAACTTCATGA+AGG - tig0031137:41282-41301 Msa1445530:three_prime_UTR 30.0%
TACATTCTACAAACCAAACA+TGG - tig0031137:41553-41572 Msa1445530:CDS 30.0%
TGGGAAGAAAAAAAAATCAG+GGG + tig0031137:41582-41601 None:intergenic 30.0%
! TGAAGCATCTATCTTGAAAA+TGG + tig0031137:41609-41628 None:intergenic 30.0%
AACATAGTCAAAAGTAGAAG+AGG + tig0031137:41644-41663 None:intergenic 30.0%
!! CTACTTTTGACTATGTTGAA+CGG - tig0031137:41647-41666 Msa1445530:intron 30.0%
!! TACTTTTGACTATGTTGAAC+GGG - tig0031137:41648-41667 Msa1445530:intron 30.0%
! TTTTTGTCATAAGGTTCTCT+GGG + tig0031137:41704-41723 None:intergenic 30.0%
!!! TTTTTTGTCATAAGGTTCTC+TGG + tig0031137:41705-41724 None:intergenic 30.0%
AGATATTGATGAGCACTATA+AGG - tig0031137:42212-42231 Msa1445530:intron 30.0%
ATCCTTGAAGTCATTGATAA+GGG - tig0031137:42246-42265 Msa1445530:intron 30.0%
TTATAGAGCTATCTTTGCTT+TGG + tig0031137:42394-42413 None:intergenic 30.0%
!! TAGTAATGGGTTATTGCATT+GGG - tig0031137:42438-42457 Msa1445530:CDS 30.0%
CTTCTATGTGATGTTTGTAA+TGG - tig0031137:42535-42554 Msa1445530:CDS 30.0%
TATGATGAACTCTTTCACAA+AGG + tig0031137:41269-41288 None:intergenic 30.0%
CATCATACAAAACTTCATGA+AGG - tig0031137:41282-41301 Msa1445530:three_prime_UTR 30.0%
TACATTCTACAAACCAAACA+TGG - tig0031137:41553-41572 Msa1445530:CDS 30.0%
TGGGAAGAAAAAAAAATCAG+GGG + tig0031137:41582-41601 None:intergenic 30.0%
! TGAAGCATCTATCTTGAAAA+TGG + tig0031137:41609-41628 None:intergenic 30.0%
AACATAGTCAAAAGTAGAAG+AGG + tig0031137:41644-41663 None:intergenic 30.0%
!! CTACTTTTGACTATGTTGAA+CGG - tig0031137:41647-41666 Msa1445530:intron 30.0%
!! TACTTTTGACTATGTTGAAC+GGG - tig0031137:41648-41667 Msa1445530:intron 30.0%
! TTTTTGTCATAAGGTTCTCT+GGG + tig0031137:41704-41723 None:intergenic 30.0%
!!! TTTTTTGTCATAAGGTTCTC+TGG + tig0031137:41705-41724 None:intergenic 30.0%
AGATATTGATGAGCACTATA+AGG - tig0031137:42212-42231 Msa1445530:intron 30.0%
ATCCTTGAAGTCATTGATAA+GGG - tig0031137:42246-42265 Msa1445530:intron 30.0%
TTATAGAGCTATCTTTGCTT+TGG + tig0031137:42394-42413 None:intergenic 30.0%
!! TAGTAATGGGTTATTGCATT+GGG - tig0031137:42438-42457 Msa1445530:CDS 30.0%
CTTCTATGTGATGTTTGTAA+TGG - tig0031137:42535-42554 Msa1445530:CDS 30.0%
! CTTCCCTTTCTTCTAAGAAA+TGG - tig0031137:41149-41168 Msa1445530:three_prime_UTR 35.0%
GCACCATTTCTTAGAAGAAA+GGG + tig0031137:41155-41174 None:intergenic 35.0%
AGCACCATTTCTTAGAAGAA+AGG + tig0031137:41156-41175 None:intergenic 35.0%
GAACAGATTGTAGAACTTGT+CGG + tig0031137:41220-41239 None:intergenic 35.0%
AACTTCATGAAGGTGAAGAT+TGG - tig0031137:41292-41311 Msa1445530:three_prime_UTR 35.0%
!! TGATGATTTGGTTATCGATC+AGG + tig0031137:41383-41402 None:intergenic 35.0%
! TTTTGTCATAAGGTTCTCTG+GGG + tig0031137:41703-41722 None:intergenic 35.0%
CAGCCATATAAAGAAAACTG+TGG - tig0031137:41931-41950 Msa1445530:intron 35.0%
ATCTGTGAATTATGATGGCA+CGG + tig0031137:42112-42131 None:intergenic 35.0%
TTGCCATCTGTGAATTATGA+TGG + tig0031137:42117-42136 None:intergenic 35.0%
ATCATAATTCACAGATGGCA+AGG - tig0031137:42116-42135 Msa1445530:intron 35.0%
AACACTTATAAGCTCTTTGG+TGG - tig0031137:42189-42208 Msa1445530:intron 35.0%
CATCCTTGAAGTCATTGATA+AGG - tig0031137:42245-42264 Msa1445530:intron 35.0%
AAGTATTCCATGTAGCCATT+TGG + tig0031137:42336-42355 None:intergenic 35.0%
AATGGCTACATGGAATACTT+TGG - tig0031137:42336-42355 Msa1445530:intron 35.0%
!! CTAGTAATGGGTTATTGCAT+TGG - tig0031137:42437-42456 Msa1445530:CDS 35.0%
! CTTCCCTTTCTTCTAAGAAA+TGG - tig0031137:41149-41168 Msa1445530:three_prime_UTR 35.0%
GCACCATTTCTTAGAAGAAA+GGG + tig0031137:41155-41174 None:intergenic 35.0%
AGCACCATTTCTTAGAAGAA+AGG + tig0031137:41156-41175 None:intergenic 35.0%
GAACAGATTGTAGAACTTGT+CGG + tig0031137:41220-41239 None:intergenic 35.0%
AACTTCATGAAGGTGAAGAT+TGG - tig0031137:41292-41311 Msa1445530:three_prime_UTR 35.0%
!! TGATGATTTGGTTATCGATC+AGG + tig0031137:41383-41402 None:intergenic 35.0%
! TTTTGTCATAAGGTTCTCTG+GGG + tig0031137:41703-41722 None:intergenic 35.0%
CAGCCATATAAAGAAAACTG+TGG - tig0031137:41931-41950 Msa1445530:intron 35.0%
ATCTGTGAATTATGATGGCA+CGG + tig0031137:42112-42131 None:intergenic 35.0%
TTGCCATCTGTGAATTATGA+TGG + tig0031137:42117-42136 None:intergenic 35.0%
ATCATAATTCACAGATGGCA+AGG - tig0031137:42116-42135 Msa1445530:intron 35.0%
AACACTTATAAGCTCTTTGG+TGG - tig0031137:42189-42208 Msa1445530:intron 35.0%
CATCCTTGAAGTCATTGATA+AGG - tig0031137:42245-42264 Msa1445530:intron 35.0%
AAGTATTCCATGTAGCCATT+TGG + tig0031137:42336-42355 None:intergenic 35.0%
AATGGCTACATGGAATACTT+TGG - tig0031137:42336-42355 Msa1445530:intron 35.0%
!! CTAGTAATGGGTTATTGCAT+TGG - tig0031137:42437-42456 Msa1445530:CDS 35.0%
! TTCTAAGAAATGGTGCTCTC+TGG - tig0031137:41159-41178 Msa1445530:three_prime_UTR 40.0%
! AGATTGGCATCACACTGATT+CGG - tig0031137:41308-41327 Msa1445530:three_prime_UTR 40.0%
!! ACACTGATTCGGTTAAACAC+TGG - tig0031137:41319-41338 Msa1445530:three_prime_UTR 40.0%
AAACACTGGACTTACGTCAT+AGG - tig0031137:41333-41352 Msa1445530:exon 40.0%
AAATCAGGGGTAACCATGTT+TGG + tig0031137:41569-41588 None:intergenic 40.0%
! ATAAGGTTCTCTGGGGAATA+TGG + tig0031137:41696-41715 None:intergenic 40.0%
TCTGTGAATTATGATGGCAC+GGG + tig0031137:42111-42130 None:intergenic 40.0%
GTGCCATCATAATTCACAGA+TGG - tig0031137:42111-42130 Msa1445530:intron 40.0%
CACCCTTATCAATGACTTCA+AGG + tig0031137:42251-42270 None:intergenic 40.0%
GAAGTCATTGATAAGGGTGA+TGG - tig0031137:42252-42271 Msa1445530:intron 40.0%
ATTCCATGTAGCCATTTGGA+GGG + tig0031137:42332-42351 None:intergenic 40.0%
TATTCCATGTAGCCATTTGG+AGG + tig0031137:42333-42352 None:intergenic 40.0%
!! AATGGGTTATTGCATTGGGT+TGG - tig0031137:42442-42461 Msa1445530:CDS 40.0%
AGTGTGATGTCTGTACATGA+CGG - tig0031137:42562-42581 Msa1445530:CDS 40.0%
! TTCTAAGAAATGGTGCTCTC+TGG - tig0031137:41159-41178 Msa1445530:three_prime_UTR 40.0%
! AGATTGGCATCACACTGATT+CGG - tig0031137:41308-41327 Msa1445530:three_prime_UTR 40.0%
!! ACACTGATTCGGTTAAACAC+TGG - tig0031137:41319-41338 Msa1445530:three_prime_UTR 40.0%
AAACACTGGACTTACGTCAT+AGG - tig0031137:41333-41352 Msa1445530:exon 40.0%
AAATCAGGGGTAACCATGTT+TGG + tig0031137:41569-41588 None:intergenic 40.0%
! ATAAGGTTCTCTGGGGAATA+TGG + tig0031137:41696-41715 None:intergenic 40.0%
TCTGTGAATTATGATGGCAC+GGG + tig0031137:42111-42130 None:intergenic 40.0%
GTGCCATCATAATTCACAGA+TGG - tig0031137:42111-42130 Msa1445530:intron 40.0%
CACCCTTATCAATGACTTCA+AGG + tig0031137:42251-42270 None:intergenic 40.0%
GAAGTCATTGATAAGGGTGA+TGG - tig0031137:42252-42271 Msa1445530:intron 40.0%
ATTCCATGTAGCCATTTGGA+GGG + tig0031137:42332-42351 None:intergenic 40.0%
TATTCCATGTAGCCATTTGG+AGG + tig0031137:42333-42352 None:intergenic 40.0%
!! AATGGGTTATTGCATTGGGT+TGG - tig0031137:42442-42461 Msa1445530:CDS 40.0%
AGTGTGATGTCTGTACATGA+CGG - tig0031137:42562-42581 Msa1445530:CDS 40.0%
! GGTAAGCTCAGTACTGAAGT+TGG - tig0031137:41180-41199 Msa1445530:three_prime_UTR 45.0%
AGATTGTAGAACTTGTCGGC+GGG + tig0031137:41216-41235 None:intergenic 45.0%
CAGATTGTAGAACTTGTCGG+CGG + tig0031137:41217-41236 None:intergenic 45.0%
GAGGATATTGACCCTCCAAA+TGG - tig0031137:42318-42337 Msa1445530:intron 45.0%
! GGTAAGCTCAGTACTGAAGT+TGG - tig0031137:41180-41199 Msa1445530:three_prime_UTR 45.0%
AGATTGTAGAACTTGTCGGC+GGG + tig0031137:41216-41235 None:intergenic 45.0%
CAGATTGTAGAACTTGTCGG+CGG + tig0031137:41217-41236 None:intergenic 45.0%
GAGGATATTGACCCTCCAAA+TGG - tig0031137:42318-42337 Msa1445530:intron 45.0%
!!! ATATTTTTGTATAAAAAAAA+AGG + tig0031137:41981-42000 None:intergenic 5.0%
!!! TTTTATACAAAAATATTTAT+TGG - tig0031137:41985-42004 Msa1445530:intron 5.0%
!!! ATATTTTTGTATAAAAAAAA+AGG + tig0031137:41981-42000 None:intergenic 5.0%
!!! TTTTATACAAAAATATTTAT+TGG - tig0031137:41985-42004 Msa1445530:intron 5.0%
ATGGCACTGCTGCTGCTAAA+TGG - tig0031137:42271-42290 Msa1445530:intron 50.0%
TGACCCTCCAAATGGCTACA+TGG - tig0031137:42326-42345 Msa1445530:intron 50.0%
ATGGCACTGCTGCTGCTAAA+TGG - tig0031137:42271-42290 Msa1445530:intron 50.0%
TGACCCTCCAAATGGCTACA+TGG - tig0031137:42326-42345 Msa1445530:intron 50.0%
Chromosome Type Strat End Strand Name
tig0031137 gene 41119 42642 41119 ID=Msa1445530;Name=Msa1445530
tig0031137 mRNA 41119 42642 41119 ID=Msa1445530-mRNA-1;Parent=Msa1445530;Name=Msa1445530-mRNA-1;_AED=0.06;_eAED=0.06;_QI=49|1|1|1|1|1|2|229|156
tig0031137 exon 41119 41631 41119 ID=Msa1445530-mRNA-1:exon:15025;Parent=Msa1445530-mRNA-1
tig0031137 exon 42407 42642 42407 ID=Msa1445530-mRNA-1:exon:15024;Parent=Msa1445530-mRNA-1
tig0031137 five_prime_UTR 42594 42642 42594 ID=Msa1445530-mRNA-1:five_prime_utr;Parent=Msa1445530-mRNA-1
tig0031137 CDS 42407 42593 42407 ID=Msa1445530-mRNA-1:cds;Parent=Msa1445530-mRNA-1
tig0031137 CDS 41348 41631 41348 ID=Msa1445530-mRNA-1:cds;Parent=Msa1445530-mRNA-1
tig0031137 three_prime_UTR 41119 41347 41119 ID=Msa1445530-mRNA-1:three_prime_utr;Parent=Msa1445530-mRNA-1
Gene Sequence

>Msa1445530

ATGGTGCTCTCTGGTAAGCTCAGTACTGAAGTTGGAATCAAAACACCCGCCGACAAGTTCTACAATCTGTTCATAACAGAACTTCATGAAGTGCAAAACCTTTGTGAAAGAGTTCATCATACAAAACTTCATGAAGGTGAAGATTGGCATCACACTGATTCGGTTAAACACTGGACTTACGTCATAGATGGCAAGGTACATACATGTCACGAGAGAGTTGAAGAAGTTGATGAACTGAATAAAAAAAACACTTATAAGCTCTTTGGTGGAGATATTGATGAGCACTATAAGGTCTTTAAGCTCATCCTTGAAGTCATTGATAAGGGTGATGGCACTGCTGCTGCTAAATGGACAGTTGAATATGAAAAGATCAATGAGGATATTGACCCTCCAAATGGCTACATGGAATACTTTGGCAAAATCACTAGAGATGTTGATGCTCATCTTGCCAAAGCAAAGATAGCTCTATAA

Protein sequence

>Msa1445530

MVLSGKLSTEVGIKTPADKFYNLFITELHEVQNLCERVHHTKLHEGEDWHHTDSVKHWTYVIDGKVHTCHERVEEVDELNKKNTYKLFGGDIDEHYKVFKLILEVIDKGDGTAAAKWTVEYEKINEDIDPPNGYMEYFGKITRDVDAHLAKAKIAL*