Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa1295450 | 0.827070 | 1.916466e-54 | -8.615850e-47 |
| Msa0106670 | Msa1295450 | 0.804661 | 1.940730e-49 | -8.615850e-47 |
| Msa0608620 | Msa1295450 | 0.806701 | 7.240229e-50 | -8.615850e-47 |
| Msa0657970 | Msa1295450 | 0.820172 | 7.891210e-53 | -8.615850e-47 |
| Msa0828560 | Msa1295450 | 0.803877 | 2.826846e-49 | -8.615850e-47 |
| Msa0157290 | Msa1295450 | 0.826995 | 1.997305e-54 | -8.615850e-47 |
| Msa0200260 | Msa1295450 | 0.814627 | 1.398940e-51 | -8.615850e-47 |
| Msa0220740 | Msa1295450 | 0.809240 | 2.086768e-50 | -8.615850e-47 |
| Msa1242220 | Msa1295450 | 0.824596 | 7.410348e-54 | -8.615850e-47 |
| Msa1264020 | Msa1295450 | 0.800792 | 1.220498e-48 | -8.615850e-47 |
| Msa1295450 | Msa1308380 | 0.811706 | 6.121939e-51 | -8.615850e-47 |
| Msa1295450 | Msa1315530 | 0.814665 | 1.372588e-51 | -8.615850e-47 |
| Msa1295450 | Msa1322890 | 0.805358 | 1.387575e-49 | -8.615850e-47 |
| Msa1295450 | Msa1327680 | 0.803180 | 3.942375e-49 | -8.615850e-47 |
| Msa1295450 | Msa1384350 | 0.802776 | 4.777970e-49 | -8.615850e-47 |
| Msa0373930 | Msa1295450 | 0.806491 | 8.014868e-50 | -8.615850e-47 |
| Msa0380740 | Msa1295450 | 0.805707 | 1.171977e-49 | -8.615850e-47 |
| Msa0398710 | Msa1295450 | 0.810764 | 9.802597e-51 | -8.615850e-47 |
| Msa1082500 | Msa1295450 | 0.807818 | 4.196949e-50 | -8.615850e-47 |
| Msa0243100 | Msa1295450 | 0.813587 | 2.374070e-51 | -8.615850e-47 |
| Msa0246430 | Msa1295450 | 0.812739 | 3.642660e-51 | -8.615850e-47 |
| Msa0287650 | Msa1295450 | 0.815143 | 1.075205e-51 | -8.615850e-47 |
| Msa0336420 | Msa1295450 | 0.808310 | 3.297357e-50 | -8.615850e-47 |
| Msa1116130 | Msa1295450 | -0.800122 | 1.670983e-48 | -8.615850e-47 |
| Msa0500360 | Msa1295450 | 0.817225 | 3.681911e-52 | -8.615850e-47 |
| Msa0536220 | Msa1295450 | 0.811300 | 7.500959e-51 | -8.615850e-47 |
| Msa0843220 | Msa1295450 | 0.800188 | 1.620156e-48 | -8.615850e-47 |
| Msa0867890 | Msa1295450 | 0.807783 | 4.270079e-50 | -8.615850e-47 |
| Msa0880140 | Msa1295450 | 0.824248 | 8.946940e-54 | -8.615850e-47 |
| Msa0959360 | Msa1295450 | 0.803590 | 3.242107e-49 | -8.615850e-47 |
| Msa0968680 | Msa1295450 | 0.801541 | 8.576230e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 16 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTACTTCCTTTAATTTCT+TGG | 0.127925 | 8_3:+53584055 | Msa1295450:five_prime_UTR |
| TTCAGTAATATACAAATTTC+AGG | 0.187791 | 8_3:+53585226 | Msa1295450:five_prime_UTR |
| TATTTCCTTTCTTACTTTGT+CGG | 0.303938 | 8_3:+53587522 | Msa1295450:five_prime_UTR |
| CACACAAACCAAGAAATTAA+AGG | 0.317020 | 8_3:-53584063 | None:intergenic |
| ATTGGAGAGAAGTTTGATAA+TGG | 0.340256 | 8_3:+53584310 | Msa1295450:five_prime_UTR |
| TTGAAAAGAAACCGTGCATT+AGG | 0.358189 | 8_3:-53587640 | None:intergenic |
| CAGAAATTCAAAAGGGATGA+AGG | 0.374176 | 8_3:+53584107 | Msa1295450:five_prime_UTR |
| TATTCAATATATAGACCATA+AGG | 0.439287 | 8_3:+53586869 | Msa1295450:five_prime_UTR |
| ATAAACCGACAAAGTAAGAA+AGG | 0.510637 | 8_3:-53587527 | None:intergenic |
| AAATTCAGGGTATCTATAAG+AGG | 0.523952 | 8_3:+53584161 | Msa1295450:five_prime_UTR |
| CAACACGGTATCTAAATAGC+CGG | 0.542156 | 8_3:+53587686 | Msa1295450:CDS |
| ACATGAACTTTCCTAATGCA+CGG | 0.560063 | 8_3:+53587629 | Msa1295450:exon |
| TTTACAACTTATTAAAACGA+TGG | 0.562613 | 8_3:-53587729 | None:intergenic |
| TATGTTGATGAGTGCTGAAG+AGG | 0.589153 | 8_3:+53584340 | Msa1295450:five_prime_UTR |
| ACTACTAGCTTATGCATGTG+AGG | 0.626348 | 8_3:+53585203 | Msa1295450:five_prime_UTR |
| CTGAAAGATGCAAATCAACA+CGG | 0.667350 | 8_3:+53587671 | Msa1295450:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTGATACAAAATATAA+TGG | - | chr8_3:53584892-53584911 | None:intergenic | 10.0% |
| !!! | TTTATATATATTTTTGTTAC+AGG | + | chr8_3:53585024-53585043 | Msa1295450:intron | 10.0% |
| !!! | TTATTTGAAGTTTAATTAAA+TGG | + | chr8_3:53585112-53585131 | Msa1295450:intron | 10.0% |
| !! | CAATTTATCAATAAAATTTA+AGG | + | chr8_3:53585563-53585582 | Msa1295450:intron | 10.0% |
| !!! | TTTTTTTTTTTACTTTTGAT+TGG | + | chr8_3:53586328-53586347 | Msa1295450:intron | 10.0% |
| !!! | AAACATTGATTGATTTTAAT+GGG | + | chr8_3:53584191-53584210 | Msa1295450:intron | 15.0% |
| !! | TGAAAGTTAAATTCAAAAAT+TGG | + | chr8_3:53584292-53584311 | Msa1295450:five_prime_UTR | 15.0% |
| !! | AGTAAAAAAAATAGACAAAA+AGG | - | chr8_3:53585433-53585452 | None:intergenic | 15.0% |
| !!! | ATAAAATTTAAGGTTGTTTA+AGG | + | chr8_3:53585573-53585592 | Msa1295450:intron | 15.0% |
| !!! | TTCTTTTCATTTCTAATTTA+CGG | - | chr8_3:53585709-53585728 | None:intergenic | 15.0% |
| !! | AAATAAAATTATTCAACATG+TGG | - | chr8_3:53585972-53585991 | None:intergenic | 15.0% |
| !! | CTAACTATTAATGATAATAA+GGG | - | chr8_3:53586427-53586446 | None:intergenic | 15.0% |
| !! | ACTAACTATTAATGATAATA+AGG | - | chr8_3:53586428-53586447 | None:intergenic | 15.0% |
| !! | TTTATATATAGATGTTGATA+TGG | - | chr8_3:53587365-53587384 | None:intergenic | 15.0% |
| !! | ATTTATGCAAAAAAAAGGAA+GGG | - | chr8_3:53584145-53584164 | None:intergenic | 20.0% |
| !! | AATTTATGCAAAAAAAAGGA+AGG | - | chr8_3:53584146-53584165 | None:intergenic | 20.0% |
| !!! | CTTTTTTTTGCATAAATTCA+GGG | + | chr8_3:53584148-53584167 | Msa1295450:five_prime_UTR | 20.0% |
| !!! | GAAACATTGATTGATTTTAA+TGG | + | chr8_3:53584190-53584209 | Msa1295450:intron | 20.0% |
| !! | AATTCTAAACACAAACAAAT+AGG | + | chr8_3:53584365-53584384 | Msa1295450:intron | 20.0% |
| !!! | AGAAGTAATTTGCTAATTTT+TGG | + | chr8_3:53584574-53584593 | Msa1295450:intron | 20.0% |
| !! | ATTGAAACAAAATGAATGAA+AGG | - | chr8_3:53584857-53584876 | None:intergenic | 20.0% |
| !!! | TTTCAGAGAAAATAAACTTT+TGG | - | chr8_3:53584935-53584954 | None:intergenic | 20.0% |
| !!! | AATTAAATGGTTTTATGATG+TGG | + | chr8_3:53585125-53585144 | Msa1295450:intron | 20.0% |
| !! | TTCAGTAATATACAAATTTC+AGG | + | chr8_3:53585226-53585245 | Msa1295450:five_prime_UTR | 20.0% |
| !!! | TAATATACAAATTTCAGGTT+AGG | + | chr8_3:53585231-53585250 | Msa1295450:intron | 20.0% |
| !!! | TATATCAAAGATTTTGTAGA+AGG | + | chr8_3:53585377-53585396 | Msa1295450:intron | 20.0% |
| !! | TGATTCATCTCTATTAATAA+TGG | + | chr8_3:53585500-53585519 | Msa1295450:intron | 20.0% |
| !!! | GAAAAGAATTTTATCTTTAG+AGG | + | chr8_3:53585721-53585740 | Msa1295450:intron | 20.0% |
| !! | CACTATTAATTAATAACCAA+GGG | - | chr8_3:53585904-53585923 | None:intergenic | 20.0% |
| !! | TCACTATTAATTAATAACCA+AGG | - | chr8_3:53585905-53585924 | None:intergenic | 20.0% |
| !!! | AGACTTTACTATTTTTCATT+TGG | + | chr8_3:53586049-53586068 | Msa1295450:intron | 20.0% |
| !!! | GACTTTACTATTTTTCATTT+GGG | + | chr8_3:53586050-53586069 | Msa1295450:intron | 20.0% |
| !!! | CTAAATGATATAATTTTTGC+CGG | + | chr8_3:53586188-53586207 | Msa1295450:intron | 20.0% |
| !! | AAATGAATATAATCATAGTC+CGG | - | chr8_3:53586210-53586229 | None:intergenic | 20.0% |
| !! | TATTCAATATATAGACCATA+AGG | + | chr8_3:53586869-53586888 | Msa1295450:five_prime_UTR | 20.0% |
| !! | TATAAAACAAAGTTACCTTA+TGG | - | chr8_3:53586887-53586906 | None:intergenic | 20.0% |
| !! | TTATACTTAAATGTCCAAAA+AGG | - | chr8_3:53586990-53587009 | None:intergenic | 20.0% |
| !!! | TTAAATTTGATAGCTATATC+AGG | - | chr8_3:53587291-53587310 | None:intergenic | 20.0% |
| !! | TATGAACTATTAATATCCAA+AGG | - | chr8_3:53587441-53587460 | None:intergenic | 20.0% |
| !!! | TTATTATAATCGAATTTTGC+AGG | + | chr8_3:53587477-53587496 | Msa1295450:intron | 20.0% |
| !! | GAAAAATACAAAAATTACAG+AGG | - | chr8_3:53587579-53587598 | None:intergenic | 20.0% |
| !! | TTGAATTTCTGAAAAAGCAA+TGG | - | chr8_3:53584098-53584117 | None:intergenic | 25.0% |
| !!! | TGCTTTTTCAGAAATTCAAA+AGG | + | chr8_3:53584099-53584118 | Msa1295450:five_prime_UTR | 25.0% |
| !!! | GCTTTTTCAGAAATTCAAAA+GGG | + | chr8_3:53584100-53584119 | Msa1295450:five_prime_UTR | 25.0% |
| ! | CCTGAATTTATGCAAAAAAA+AGG | - | chr8_3:53584150-53584169 | None:intergenic | 25.0% |
| !!! | CCTTTTTTTTGCATAAATTC+AGG | + | chr8_3:53584147-53584166 | Msa1295450:five_prime_UTR | 25.0% |
| !! | AAAACTTAAGTCTCTTTTTG+AGG | + | chr8_3:53584421-53584440 | Msa1295450:intron | 25.0% |
| !! | AAACTTAAGTCTCTTTTTGA+GGG | + | chr8_3:53584422-53584441 | Msa1295450:intron | 25.0% |
| ! | AGACTAGATAATTCTTTCTT+TGG | + | chr8_3:53584660-53584679 | Msa1295450:intron | 25.0% |
| ! | GATAATTCTTTCTTTGGTAA+AGG | + | chr8_3:53584666-53584685 | Msa1295450:intron | 25.0% |
| !!! | TCTCTGAAATTGTTTAATGT+AGG | + | chr8_3:53584946-53584965 | Msa1295450:intron | 25.0% |
| !! | TTTTCATTGTAGTTGATCAA+AGG | + | chr8_3:53585288-53585307 | Msa1295450:intron | 25.0% |
| ! | AAATCTTTGATATAGCATCA+TGG | - | chr8_3:53585371-53585390 | None:intergenic | 25.0% |
| ! | TGCGAAGAAAATTTAGAAAA+TGG | - | chr8_3:53585403-53585422 | None:intergenic | 25.0% |
| !! | TTTCTAAATTTTCTTCGCAT+TGG | + | chr8_3:53585404-53585423 | Msa1295450:intron | 25.0% |
| ! | TATTTGTCTCTCTTTACTAT+AGG | + | chr8_3:53585987-53586006 | Msa1295450:intron | 25.0% |
| ! | ATTTGTCTCTCTTTACTATA+GGG | + | chr8_3:53585988-53586007 | Msa1295450:intron | 25.0% |
| ! | CACAAATATGGTTAGAAAAT+AGG | - | chr8_3:53586137-53586156 | None:intergenic | 25.0% |
| !! | CTATTTTCTAACCATATTTG+TGG | + | chr8_3:53586135-53586154 | Msa1295450:intron | 25.0% |
| !! | ACACTTAACATTTCTAAGAA+CGG | + | chr8_3:53586401-53586420 | Msa1295450:intron | 25.0% |
| !!! | CTGTTTTTAGTTTAAGTTGT+TGG | + | chr8_3:53586553-53586572 | Msa1295450:intron | 25.0% |
| ! | TACCATAACTCTAACAAATA+GGG | - | chr8_3:53586586-53586605 | None:intergenic | 25.0% |
| ! | ATACCATAACTCTAACAAAT+AGG | - | chr8_3:53586587-53586606 | None:intergenic | 25.0% |
| ! | ATAAAAGGCAATGTCAATTT+CGG | - | chr8_3:53586787-53586806 | None:intergenic | 25.0% |
| ! | AAGAAGAATCAGACAATAAA+AGG | - | chr8_3:53586802-53586821 | None:intergenic | 25.0% |
| ! | ATACCATGACATAATAACAT+TGG | + | chr8_3:53586917-53586936 | Msa1295450:intron | 25.0% |
| ! | ATAACATTGGAGATAATTAG+TGG | + | chr8_3:53586930-53586949 | Msa1295450:intron | 25.0% |
| ! | TAACATTGGAGATAATTAGT+GGG | + | chr8_3:53586931-53586950 | Msa1295450:intron | 25.0% |
| ! | TACCTATTTGAATTGTTTCA+CGG | + | chr8_3:53587024-53587043 | Msa1295450:intron | 25.0% |
| !! | ATATCAGGTACACATTTTAT+TGG | - | chr8_3:53587276-53587295 | None:intergenic | 25.0% |
| ! | ACTATTAATATCCAAAGGAA+AGG | - | chr8_3:53587436-53587455 | None:intergenic | 25.0% |
| ! | TATTTCCTTTCTTACTTTGT+CGG | + | chr8_3:53587522-53587541 | Msa1295450:five_prime_UTR | 25.0% |
| ! | ATACAAAAATTACAGAGGAA+AGG | - | chr8_3:53587574-53587593 | None:intergenic | 25.0% |
| !!! | GAGTTTTATAACACAAAATC+CGG | - | chr8_3:53587708-53587727 | None:intergenic | 25.0% |
| ! | CTCTACTTCCTTTAATTTCT+TGG | + | chr8_3:53584055-53584074 | Msa1295450:five_prime_UTR | 30.0% |
| CACACAAACCAAGAAATTAA+AGG | - | chr8_3:53584066-53584085 | None:intergenic | 30.0% | |
| ! | ATTTCTGAAAAAGCAATGGA+AGG | - | chr8_3:53584094-53584113 | None:intergenic | 30.0% |
| ! | AAATTCAGGGTATCTATAAG+AGG | + | chr8_3:53584161-53584180 | Msa1295450:five_prime_UTR | 30.0% |
| ATTGGAGAGAAGTTTGATAA+TGG | + | chr8_3:53584310-53584329 | Msa1295450:five_prime_UTR | 30.0% | |
| ! | GAGACTTAAGTTTTCAAACA+GGG | - | chr8_3:53584415-53584434 | None:intergenic | 30.0% |
| ! | AGAGACTTAAGTTTTCAAAC+AGG | - | chr8_3:53584416-53584435 | None:intergenic | 30.0% |
| CTTCACAAAAGATGCTAATA+GGG | - | chr8_3:53584705-53584724 | None:intergenic | 30.0% | |
| ACTTCACAAAAGATGCTAAT+AGG | - | chr8_3:53584706-53584725 | None:intergenic | 30.0% | |
| ! | AGGTTTCGCTTTAAGTTATT+TGG | + | chr8_3:53584966-53584985 | Msa1295450:intron | 30.0% |
| ! | TCAATTCTTTTCAGTTGTGA+TGG | + | chr8_3:53585048-53585067 | Msa1295450:five_prime_UTR | 30.0% |
| !!! | TAAATGGTTTTATGATGTGG+AGG | + | chr8_3:53585128-53585147 | Msa1295450:intron | 30.0% |
| ATAAATTGATCCTGCAACAA+AGG | - | chr8_3:53585177-53585196 | None:intergenic | 30.0% | |
| AGAAATGAACCAAAAGACAA+AGG | - | chr8_3:53585259-53585278 | None:intergenic | 30.0% | |
| !!! | ATCAAAGGTGTGCAATTTTT+TGG | + | chr8_3:53585303-53585322 | Msa1295450:intron | 30.0% |
| GATGTGAATTAGTTACTTGA+TGG | + | chr8_3:53585792-53585811 | Msa1295450:intron | 30.0% | |
| ATAGATCAGATCCACAAATA+TGG | - | chr8_3:53586149-53586168 | None:intergenic | 30.0% | |
| TTCCAGAATATGTAATGAGT+GGG | - | chr8_3:53586462-53586481 | None:intergenic | 30.0% | |
| ! | CATTACATATTCTGGAAGTA+TGG | + | chr8_3:53586465-53586484 | Msa1295450:intron | 30.0% |
| GATGACATCATTTACTGAAT+TGG | - | chr8_3:53586610-53586629 | None:intergenic | 30.0% | |
| CTCTTAATATGATTCTTCGA+AGG | + | chr8_3:53586634-53586653 | Msa1295450:intron | 30.0% | |
| TTCATGGACAATTTCTTTAG+TGG | - | chr8_3:53586731-53586750 | None:intergenic | 30.0% | |
| ACTAAAGAAATTGTCCATGA+AGG | + | chr8_3:53586730-53586749 | Msa1295450:intron | 30.0% | |
| AGCTTCAAAATCTGCAAAAA+TGG | - | chr8_3:53586827-53586846 | None:intergenic | 30.0% | |
| !!! | GTAACTTTGTTTTATACTCG+AGG | + | chr8_3:53586891-53586910 | Msa1295450:intron | 30.0% |
| TCTCCAATGTTATTATGTCA+TGG | - | chr8_3:53586923-53586942 | None:intergenic | 30.0% | |
| !! | CATTTGATTTGAGGATAAAG+AGG | - | chr8_3:53587212-53587231 | None:intergenic | 30.0% |
| !! | AATGTCACTTGCAAATTTTG+AGG | + | chr8_3:53587228-53587247 | Msa1295450:intron | 30.0% |
| TCTAGTTAAAGCGTATACAT+AGG | - | chr8_3:53587412-53587431 | None:intergenic | 30.0% | |
| ATAAACCGACAAAGTAAGAA+AGG | - | chr8_3:53587530-53587549 | None:intergenic | 30.0% | |
| !!! | CTTTGTCGGTTTATATTTTG+AGG | + | chr8_3:53587536-53587555 | Msa1295450:five_prime_UTR | 30.0% |
| CAGAAATTCAAAAGGGATGA+AGG | + | chr8_3:53584107-53584126 | Msa1295450:five_prime_UTR | 35.0% | |
| ! | AGGGTATCTATAAGAGGTAA+TGG | + | chr8_3:53584167-53584186 | Msa1295450:intron | 35.0% |
| GGGTATCTATAAGAGGTAAT+GGG | + | chr8_3:53584168-53584187 | Msa1295450:intron | 35.0% | |
| AAACACAAACAAATAGGCAC+AGG | + | chr8_3:53584371-53584390 | Msa1295450:intron | 35.0% | |
| TGTTGAGTTACTCTTTGTGT+AGG | - | chr8_3:53584511-53584530 | None:intergenic | 35.0% | |
| !! | TCTTTTCAGTTGTGATGGAA+AGG | + | chr8_3:53585053-53585072 | Msa1295450:five_prime_UTR | 35.0% |
| !! | ATTTTTGTGATTTGCCTTGC+TGG | + | chr8_3:53585332-53585351 | Msa1295450:intron | 35.0% |
| GATTAAGCATAAAACCAGCA+AGG | - | chr8_3:53585349-53585368 | None:intergenic | 35.0% | |
| !! | TTGAAGTACTGCTTGATGTT+TGG | + | chr8_3:53585768-53585787 | Msa1295450:intron | 35.0% |
| !! | GCTTTTCTTTTTTGCAAGAG+AGG | + | chr8_3:53586072-53586091 | Msa1295450:intron | 35.0% |
| CTTCCAGAATATGTAATGAG+TGG | - | chr8_3:53586463-53586482 | None:intergenic | 35.0% | |
| ! | GTCCCTATTTGTTAGAGTTA+TGG | + | chr8_3:53586581-53586600 | Msa1295450:intron | 35.0% |
| TTGGAGATAATTAGTGGGAA+AGG | + | chr8_3:53586936-53586955 | Msa1295450:intron | 35.0% | |
| TGGAGATAATTAGTGGGAAA+GGG | + | chr8_3:53586937-53586956 | Msa1295450:intron | 35.0% | |
| !! | AAAGGTTGAGAGAGTGTTAT+GGG | - | chr8_3:53586972-53586991 | None:intergenic | 35.0% |
| !! | AAAAGGTTGAGAGAGTGTTA+TGG | - | chr8_3:53586973-53586992 | None:intergenic | 35.0% |
| ! | TAACACTCTCTCAACCTTTT+TGG | + | chr8_3:53586973-53586992 | Msa1295450:intron | 35.0% |
| AGCCGTGAAACAATTCAAAT+AGG | - | chr8_3:53587029-53587048 | None:intergenic | 35.0% | |
| TTGAATTGTTTCACGGCTTT+AGG | + | chr8_3:53587031-53587050 | Msa1295450:intron | 35.0% | |
| TGTGTATCTAGTAGTTGCAA+TGG | - | chr8_3:53587083-53587102 | None:intergenic | 35.0% | |
| !! | TGCAAGTGACATTTGATTTG+AGG | - | chr8_3:53587221-53587240 | None:intergenic | 35.0% |
| GAAGCTAAAACGATATTCAG+AGG | - | chr8_3:53587343-53587362 | None:intergenic | 35.0% | |
| GTTCATGAGAAACGAACATT+TGG | - | chr8_3:53587390-53587409 | None:intergenic | 35.0% | |
| TTTAACTAGAGCCTTTCCTT+TGG | + | chr8_3:53587422-53587441 | Msa1295450:intron | 35.0% | |
| ACATGAACTTTCCTAATGCA+CGG | + | chr8_3:53587629-53587648 | Msa1295450:exon | 35.0% | |
| TTGAAAAGAAACCGTGCATT+AGG | - | chr8_3:53587643-53587662 | None:intergenic | 35.0% | |
| CTGAAAGATGCAAATCAACA+CGG | + | chr8_3:53587671-53587690 | Msa1295450:CDS | 35.0% | |
| ! | CTGCACTTGGTAACAACAAA+AGG | - | chr8_3:53584250-53584269 | None:intergenic | 40.0% |
| !!! | CTTTTGTTGTTACCAAGTGC+AGG | + | chr8_3:53584248-53584267 | Msa1295450:intron | 40.0% |
| !! | TATGTTGATGAGTGCTGAAG+AGG | + | chr8_3:53584340-53584359 | Msa1295450:five_prime_UTR | 40.0% |
| AGTTACTCTTTGTGTAGGAC+AGG | - | chr8_3:53584506-53584525 | None:intergenic | 40.0% | |
| !! | GCATCTTTTGTGAAGTGCTA+AGG | + | chr8_3:53584710-53584729 | Msa1295450:intron | 40.0% |
| ! | ACTACTAGCTTATGCATGTG+AGG | + | chr8_3:53585203-53585222 | Msa1295450:five_prime_UTR | 40.0% |
| ! | GGTTAGGTTCCTTTGTCTTT+TGG | + | chr8_3:53585247-53585266 | Msa1295450:intron | 40.0% |
| GGGTCTAATATGATACTGTG+CGG | + | chr8_3:53586008-53586027 | Msa1295450:intron | 40.0% | |
| GTCAGTAGTGTGTCAACATA+TGG | + | chr8_3:53586296-53586315 | Msa1295450:intron | 40.0% | |
| GACCCACTCATTACATATTC+TGG | + | chr8_3:53586457-53586476 | Msa1295450:intron | 40.0% | |
| GGCAACACTAAAATCCTTCA+TGG | - | chr8_3:53586747-53586766 | None:intergenic | 40.0% | |
| ! | GTTGCCTTCAAGTTACCTTA+TGG | + | chr8_3:53586761-53586780 | Msa1295450:intron | 40.0% |
| CAATGTCAATTTCGGCCATA+AGG | - | chr8_3:53586779-53586798 | None:intergenic | 40.0% | |
| GGAGATAATTAGTGGGAAAG+GGG | + | chr8_3:53586938-53586957 | Msa1295450:intron | 40.0% | |
| !! | TTGTTTCACGGCTTTAGGAT+TGG | + | chr8_3:53587036-53587055 | Msa1295450:intron | 40.0% |
| GCCTTTCTTCTCAAGTCATA+CGG | + | chr8_3:53587117-53587136 | Msa1295450:intron | 40.0% | |
| ACCGTATGACTTGAGAAGAA+AGG | - | chr8_3:53587121-53587140 | None:intergenic | 40.0% | |
| TACATGTGGGGTTATTTGTG+TGG | + | chr8_3:53587144-53587163 | Msa1295450:intron | 40.0% | |
| TCCGCGATTTATACTGGTAA+AGG | + | chr8_3:53587171-53587190 | Msa1295450:intron | 40.0% | |
| CCCTTTACCAGTATAAATCG+CGG | - | chr8_3:53587175-53587194 | None:intergenic | 40.0% | |
| CCGCGATTTATACTGGTAAA+GGG | + | chr8_3:53587172-53587191 | Msa1295450:intron | 40.0% | |
| CAACACGGTATCTAAATAGC+CGG | + | chr8_3:53587686-53587705 | Msa1295450:CDS | 40.0% | |
| TCGGCCATAAGGTAACTTGA+AGG | - | chr8_3:53586768-53586787 | None:intergenic | 45.0% | |
| AGTCATACGGTGCATACATG+TGG | + | chr8_3:53587130-53587149 | Msa1295450:intron | 45.0% | |
| GTCATACGGTGCATACATGT+GGG | + | chr8_3:53587131-53587150 | Msa1295450:intron | 45.0% | |
| TCATACGGTGCATACATGTG+GGG | + | chr8_3:53587132-53587151 | Msa1295450:intron | 45.0% | |
| ATGTGGGGTTATTTGTGTGG+AGG | + | chr8_3:53587147-53587166 | Msa1295450:intron | 45.0% | |
| !!! | TAATTATCTTATTATAATTT+TGG | + | chr8_3:53585838-53585857 | Msa1295450:intron | 5.0% |
| CATCGTTCTTCACCTGCACT+TGG | - | chr8_3:53584263-53584282 | None:intergenic | 50.0% | |
| ! | ACAAGTGCTGCCTTTGTTGC+AGG | + | chr8_3:53585164-53585183 | Msa1295450:intron | 50.0% |
| GAGTATGTCTGCAATGCCCT+TGG | + | chr8_3:53585885-53585904 | Msa1295450:intron | 50.0% | |
| !! | GGCTTTAGGATTGGAGACTC+TGG | + | chr8_3:53587045-53587064 | Msa1295450:intron | 50.0% |
| GGAGGCTCCGCGATTTATAC+TGG | + | chr8_3:53587165-53587184 | Msa1295450:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 53584051 | 53587747 | 53584051 | ID=Msa1295450;Name=Msa1295450 |
| chr8_3 | mRNA | 53584051 | 53587747 | 53584051 | ID=Msa1295450-mRNA-1;Parent=Msa1295450;Name=Msa1295450-mRNA-1;_AED=0.40;_eAED=0.49;_QI=502|0.8|0.83|1|0|0|6|0|39 |
| chr8_3 | exon | 53584051 | 53584182 | 53584051 | ID=Msa1295450-mRNA-1:exon:15368;Parent=Msa1295450-mRNA-1 |
| chr8_3 | exon | 53584270 | 53584361 | 53584270 | ID=Msa1295450-mRNA-1:exon:15369;Parent=Msa1295450-mRNA-1 |
| chr8_3 | exon | 53585046 | 53585074 | 53585046 | ID=Msa1295450-mRNA-1:exon:15370;Parent=Msa1295450-mRNA-1 |
| chr8_3 | exon | 53585186 | 53585247 | 53585186 | ID=Msa1295450-mRNA-1:exon:15371;Parent=Msa1295450-mRNA-1 |
| chr8_3 | exon | 53586836 | 53586890 | 53586836 | ID=Msa1295450-mRNA-1:exon:15372;Parent=Msa1295450-mRNA-1 |
| chr8_3 | exon | 53587499 | 53587747 | 53587499 | ID=Msa1295450-mRNA-1:exon:15373;Parent=Msa1295450-mRNA-1 |
| chr8_3 | five_prime_UTR | 53584051 | 53584182 | 53584051 | ID=Msa1295450-mRNA-1:five_prime_utr;Parent=Msa1295450-mRNA-1 |
| chr8_3 | five_prime_UTR | 53584270 | 53584361 | 53584270 | ID=Msa1295450-mRNA-1:five_prime_utr;Parent=Msa1295450-mRNA-1 |
| chr8_3 | five_prime_UTR | 53585046 | 53585074 | 53585046 | ID=Msa1295450-mRNA-1:five_prime_utr;Parent=Msa1295450-mRNA-1 |
| chr8_3 | five_prime_UTR | 53585186 | 53585247 | 53585186 | ID=Msa1295450-mRNA-1:five_prime_utr;Parent=Msa1295450-mRNA-1 |
| chr8_3 | five_prime_UTR | 53586836 | 53586890 | 53586836 | ID=Msa1295450-mRNA-1:five_prime_utr;Parent=Msa1295450-mRNA-1 |
| chr8_3 | five_prime_UTR | 53587499 | 53587630 | 53587499 | ID=Msa1295450-mRNA-1:five_prime_utr;Parent=Msa1295450-mRNA-1 |
| chr8_3 | CDS | 53587631 | 53587747 | 53587631 | ID=Msa1295450-mRNA-1:cds;Parent=Msa1295450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
