AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1296260

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1296260 MtrunA17_Chr8g0375041 82.079 279 27 3 1 279 1 256 7.46e-166 459
Msa1296260 MtrunA17_Chr5g0402291 45.645 287 106 7 1 268 1 256 1.79e-70 219
Msa1296260 MtrunA17_Chr3g0134031 36.704 267 114 6 2 216 17 280 1.85e-48 164
Msa1296260 MtrunA17_Chr7g0257331 48.795 166 79 1 3 168 16 175 2.07e-47 158
Msa1296260 MtrunA17_Chr5g0397881 43.719 199 83 3 2 171 17 215 2.93e-47 161
Msa1296260 MtrunA17_Chr5g0441531 42.857 182 100 2 2 179 18 199 5.55e-45 152
Msa1296260 MtrunA17_Chr1g0203601 43.000 200 98 3 2 185 11 210 2.58e-42 147
Msa1296260 MtrunA17_Chr6g0472421 40.500 200 89 1 2 171 26 225 1.71e-41 145
Msa1296260 MtrunA17_Chr5g0410881 41.176 187 102 1 6 192 29 207 3.69e-41 148
Msa1296260 MtrunA17_Chr4g0039891 41.667 192 97 4 9 197 12 191 5.32e-41 147
Msa1296260 MtrunA17_Chr7g0260331 61.458 96 37 0 5 100 45 140 7.12e-37 134
Msa1296260 MtrunA17_Chr6g0467041 60.215 93 37 0 8 100 21 113 1.06e-36 133
Msa1296260 MtrunA17_Chr1g0204741 38.172 186 99 3 7 192 38 207 4.79e-36 131
Msa1296260 MtrunA17_Chr1g0185131 55.963 109 47 1 5 112 28 136 4.89e-35 129
Msa1296260 MtrunA17_Chr3g0135831 37.879 198 98 5 5 197 42 219 5.32e-35 129
Msa1296260 MtrunA17_Chr6g0485571 56.000 100 44 0 1 100 3 102 7.26e-35 128
Msa1296260 MtrunA17_Chr8g0392001 58.416 101 41 1 7 106 20 120 1.13e-34 128
Msa1296260 MtrunA17_Chr8g0379701 42.282 149 69 2 9 156 12 144 1.61e-34 129
Msa1296260 MtrunA17_Chr2g0284481 39.884 173 87 3 7 175 13 172 9.91e-34 126
Msa1296260 MtrunA17_Chr4g0071051 56.842 95 41 0 5 99 97 191 8.40e-33 124
Msa1296260 MtrunA17_Chr8g0378061 58.242 91 38 0 10 100 23 113 4.01e-32 123
Msa1296260 MtrunA17_Chr4g0047421 39.375 160 89 2 6 161 30 185 4.03e-32 117
Msa1296260 MtrunA17_Chr2g0330821 53.191 94 44 0 7 100 77 170 4.77e-29 113
Msa1296260 MtrunA17_Chr1g0179321 60.317 63 25 0 6 68 46 108 7.13e-24 93.2
Msa1296260 MtrunA17_Chr4g0023771 56.667 60 26 0 7 66 13 72 2.23e-18 78.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1296260 AT4G36990.1 43.411 258 119 5 2 247 7 249 4.49e-56 182
Msa1296260 AT1G46264.1 35.836 293 132 7 6 247 31 318 1.02e-45 157
Msa1296260 AT2G41690.1 45.810 179 85 3 6 172 37 215 1.96e-43 148
Msa1296260 AT4G11660.1 41.500 200 77 2 2 161 52 251 2.22e-42 149
Msa1296260 AT3G02990.1 42.105 190 93 4 6 192 20 195 1.21e-41 149
Msa1296260 AT1G32330.2 43.316 187 100 3 6 192 34 214 7.77e-41 147
Msa1296260 AT1G32330.1 43.316 187 100 3 6 192 34 214 1.02e-40 147
Msa1296260 AT5G62020.1 40.625 192 92 4 2 171 16 207 2.25e-40 142
Msa1296260 AT5G16820.1 41.327 196 87 5 6 192 24 200 3.42e-40 145
Msa1296260 AT5G16820.2 41.327 196 87 5 6 192 24 200 3.42e-40 145
Msa1296260 AT4G17750.1 36.404 228 135 3 7 230 50 271 4.34e-38 140
Msa1296260 AT3G51910.1 52.101 119 48 1 6 124 26 135 4.20e-37 132
Msa1296260 AT3G24520.1 42.169 166 75 4 8 171 16 162 6.35e-37 134
Msa1296260 AT2G26150.1 38.624 189 101 1 9 197 44 217 1.00e-36 134
Msa1296260 AT2G26150.4 38.624 189 101 1 9 197 44 217 1.00e-36 134
Msa1296260 AT3G22830.1 59.375 96 39 0 6 101 58 153 6.05e-35 130
Msa1296260 AT5G43840.1 38.122 181 95 2 3 183 13 176 2.20e-34 126
Msa1296260 AT3G63350.1 36.898 187 99 1 7 193 26 193 3.47e-34 125
Msa1296260 AT5G03720.2 60.638 94 37 0 8 101 54 147 6.09e-34 127
Msa1296260 AT5G03720.1 60.638 94 37 0 8 101 54 147 6.09e-34 127
Msa1296260 AT4G13980.1 41.718 163 74 2 10 172 24 165 1.06e-33 128
Msa1296260 AT1G67970.1 43.125 160 75 3 7 165 17 161 1.04e-32 124
Msa1296260 AT5G54070.1 55.435 92 41 0 8 99 70 161 2.43e-32 122
Msa1296260 AT5G45710.3 43.137 153 70 2 6 157 10 146 5.11e-31 118
Msa1296260 AT5G45710.1 43.137 153 70 2 6 157 10 146 5.11e-31 118
Msa1296260 AT4G18880.1 35.922 206 103 4 6 209 12 190 1.73e-29 115
Msa1296260 AT4G18870.1 39.560 91 55 0 6 96 143 233 5.04e-18 82.4
Msa1296260 AT4G18870.1 39.785 93 51 3 6 96 10 99 2.27e-14 72.0
Msa1296260 AT1G77570.1 37.931 87 51 2 10 93 27 113 7.78e-12 62.4

Find 103 sgRNAs with CRISPR-Local

Find 259 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTATTTATGTATTTATAAA+AGG 0.180298 8_3:+55337381 None:intergenic
AGGAAAATAAATAAAGAAAA+AGG 0.187830 8_3:+55337474 None:intergenic
CTCTGGTGCTGCTGAAGATA+TGG 0.236484 8_3:-55333359 Msa1296260:CDS
TTGTTGTGCTTGAAATATTT+TGG 0.239756 8_3:+55337125 None:intergenic
TTCCATAAGCTTTGGATTCA+TGG 0.249690 8_3:-55337710 Msa1296260:five_prime_UTR
ATTTCGTAGTTGTTTGGTTT+TGG 0.287663 8_3:-55332787 Msa1296260:three_prime_UTR
TCACAAATGATGTGATTTCT+TGG 0.292322 8_3:-55337208 Msa1296260:CDS
ATCCATGAATCCAAAGCTTA+TGG 0.293713 8_3:+55337708 None:intergenic
CGAGAACAAAAGACTCAAAA+TGG 0.305997 8_3:-55333293 Msa1296260:CDS
GTGATTTCTTGGGGTGAAAA+TGG 0.307729 8_3:-55337197 Msa1296260:CDS
ATTTGTCGGCAGCAGCTTTC+CGG 0.311222 8_3:+55333506 None:intergenic
CCCCTCTCTTAAAATTCTCT+TGG 0.321950 8_3:+55333473 None:intergenic
AAATCATAAAACAATACTTC+TGG 0.327276 8_3:+55337813 None:intergenic
TTTCAATTTCTCAGGGGTTC+CGG 0.336163 8_3:-55333525 Msa1296260:intron
TGTTCTCTGTTTAGAAGTTA+TGG 0.336664 8_3:-55337756 Msa1296260:five_prime_UTR
CACAAATGATGTGATTTCTT+GGG 0.344507 8_3:-55337207 Msa1296260:CDS
GAAAGGGTATAAGACTGTTT+GGG 0.345034 8_3:-55333024 Msa1296260:CDS
GTATAAGACTGTTTGGGGTT+TGG 0.352030 8_3:-55333018 Msa1296260:CDS
TTCAGGGCGGTCTCAACATC+GGG 0.365918 8_3:-55333141 Msa1296260:CDS
AGAATTGCTTGCTTATCTTC+AGG 0.367247 8_3:-55333221 Msa1296260:CDS
AGAATTGCTTGCTTATCTTC+AGG 0.372663 8_3:-55333158 Msa1296260:CDS
TCATTGTTGGCACCATCAAT+TGG 0.373020 8_3:+55332917 None:intergenic
TTATTCATTTCCATAAGCTT+TGG 0.373179 8_3:-55337718 Msa1296260:five_prime_UTR
GGAAAGGGTATAAGACTGTT+TGG 0.390575 8_3:-55333025 Msa1296260:CDS
ATACAAATTTCGTAGTTGTT+TGG 0.391325 8_3:-55332793 Msa1296260:three_prime_UTR
GGAAAGCTGCTGCCGACAAA+TGG 0.392444 8_3:-55333504 Msa1296260:CDS
TCTCTTGTGGCAGCTACCCT+TGG 0.404436 8_3:+55332952 None:intergenic
GTCTTCCGACGCTTGATTGT+CGG 0.414985 8_3:+55333436 None:intergenic
TTCAGGGTGATCTCAACATC+GGG 0.437971 8_3:-55333204 Msa1296260:CDS
GTCTGATCGGTCCACCGATC+CGG 0.438684 8_3:+55333324 None:intergenic
AGGATCATCAATCATCTCAT+AGG 0.440358 8_3:+55337232 None:intergenic
CCCGCTGCTGTAAGATCTGT+TGG 0.442824 8_3:-55333406 Msa1296260:CDS
CCCTCTCTTAAAATTCTCTT+GGG 0.443216 8_3:+55333474 None:intergenic
GAATTGCTTGCTTATCTTCA+GGG 0.443640 8_3:-55333220 Msa1296260:CDS
GAATTGCTTGCTTATCTTCA+GGG 0.444946 8_3:-55333157 Msa1296260:CDS
CAAAGTAGAATTTGTGAAGT+AGG 0.450996 8_3:-55337320 Msa1296260:five_prime_UTR
AAGTAGGTGAAGGGTAGATC+GGG 0.453594 8_3:-55337304 Msa1296260:five_prime_UTR
ATCATCATCCGTATCATGGC+TGG 0.456429 8_3:+55333075 None:intergenic
AACAGCCTTGAACTCATTGT+TGG 0.460694 8_3:+55332904 None:intergenic
CATTGTTGGCACCATCAATT+GGG 0.461669 8_3:+55332918 None:intergenic
GAAGTAGGTGAAGGGTAGAT+CGG 0.467714 8_3:-55337305 Msa1296260:five_prime_UTR
ATCAATCATCTCATAGGTCT+TGG 0.469811 8_3:+55337238 None:intergenic
GGGCGTGAAGACCCAATTGA+TGG 0.486085 8_3:-55332929 Msa1296260:CDS
TCGTTCCTTTGCCAAGGATA+CGG 0.487676 8_3:+55333104 None:intergenic
GATGAAATTAACCGTATCCT+TGG 0.490434 8_3:-55333115 Msa1296260:CDS
GAAAGCTGCTGCCGACAAAT+GGG 0.492919 8_3:-55333503 Msa1296260:CDS
CATCATCATCATCCGTATCA+TGG 0.496813 8_3:+55333071 None:intergenic
TTGGGCGAATTCCCATTTGT+CGG 0.497343 8_3:+55333492 None:intergenic
TCTGGTGCTGCTGAAGATAT+GGG 0.499437 8_3:-55333358 Msa1296260:CDS
CCAACAGATCTTACAGCAGC+GGG 0.502479 8_3:+55333406 None:intergenic
GTACGTCGTGAATGCGGAAA+GGG 0.504721 8_3:-55333040 Msa1296260:CDS
GCTGTAAGATCTGTTGGAGT+TGG 0.513039 8_3:-55333400 Msa1296260:CDS
GAAGAAAATGTCTAAGAGGT+TGG 0.514254 8_3:-55337279 Msa1296260:exon
GTTTGGCTGAAGGAAGAAGA+GGG 0.514660 8_3:-55333001 Msa1296260:CDS
TGAGTTCAAGGCTGTTGTCT+AGG 0.515335 8_3:-55332897 Msa1296260:exon
CTTCACGAGTGCCAGTTCAC+TGG 0.517956 8_3:+55333255 None:intergenic
TAAGATCTGTTGGAGTTGGC+GGG 0.518928 8_3:-55333396 Msa1296260:CDS
GGGAATTCACCTTCGCACTC+TGG 0.523578 8_3:-55333376 Msa1296260:CDS
ACCCATTCGTTCCTTTGCCA+AGG 0.525178 8_3:+55333098 None:intergenic
GGTCTTCACGCCCTCTCTTG+TGG 0.525936 8_3:+55332939 None:intergenic
GTAAGATCTGTTGGAGTTGG+CGG 0.525989 8_3:-55333397 Msa1296260:CDS
GAATTTGTGAAGTAGGTGAA+GGG 0.527424 8_3:-55337313 Msa1296260:five_prime_UTR
ATCCTTGGCAAAGGAACGAA+TGG 0.527436 8_3:-55333100 Msa1296260:CDS
CTTCAGGGCGGTCTCAACAT+CGG 0.528747 8_3:-55333142 Msa1296260:CDS
AGAATTTGTGAAGTAGGTGA+AGG 0.530681 8_3:-55337314 Msa1296260:five_prime_UTR
ACTGTTTGGGGTTTGGCTGA+AGG 0.533700 8_3:-55333011 Msa1296260:CDS
AGGGTAGCTGCCACAAGAGA+GGG 0.548965 8_3:-55332949 Msa1296260:CDS
AGAAGAGGGGAAAGACAAGG+TGG 0.549839 8_3:-55332987 Msa1296260:CDS
GAATGGGTCCAGCCATGATA+CGG 0.552219 8_3:-55333083 Msa1296260:CDS
GGGATCAACTTCGACCGGAT+CGG 0.553641 8_3:-55333338 Msa1296260:CDS
GGAAGAAGAAAATGTCTAAG+AGG 0.554539 8_3:-55337283 Msa1296260:exon
CTTGATTGTCGGAAGCAGCT+CGG 0.555478 8_3:+55333447 None:intergenic
TGGTGCCAACAATGAGTTCA+AGG 0.555667 8_3:-55332909 Msa1296260:CDS
TCCAACAGATCTTACAGCAG+CGG 0.556507 8_3:+55333405 None:intergenic
GTTGTCTAGGACATGTGGTA+AGG 0.558034 8_3:-55332884 Msa1296260:exon
AAGGGTAGCTGCCACAAGAG+AGG 0.563776 8_3:-55332950 Msa1296260:CDS
GGTACGTCGTGAATGCGGAA+AGG 0.565791 8_3:-55333041 Msa1296260:CDS
GATATGGGATCAACTTCGAC+CGG 0.569648 8_3:-55333343 Msa1296260:CDS
TCCTTGGCAAAGGAACGAAT+GGG 0.573236 8_3:-55333099 Msa1296260:CDS
GGAAGAAGAGGGGAAAGACA+AGG 0.573733 8_3:-55332990 Msa1296260:CDS
AAAGGGTATAAGACTGTTTG+GGG 0.582432 8_3:-55333023 Msa1296260:CDS
ATCAACTTCGACCGGATCGG+TGG 0.586784 8_3:-55333335 Msa1296260:CDS
ATTAACCGTATCCTTGGCAA+AGG 0.593236 8_3:-55333109 Msa1296260:CDS
CTTCAGGGTGATCTCAACAT+CGG 0.601478 8_3:-55333205 Msa1296260:CDS
GGTTTGGCTGAAGGAAGAAG+AGG 0.605675 8_3:-55333002 Msa1296260:CDS
TGCTTCCGACAATCAAGCGT+CGG 0.618599 8_3:-55333441 Msa1296260:CDS
GAAATCACATCATTTGTGAG+AGG 0.623568 8_3:+55337212 None:intergenic
GTATGTTTAATATGGTAACA+AGG 0.624294 8_3:+55337498 None:intergenic
GGTGGAGATTGACACTGCCA+AGG 0.626051 8_3:-55332969 Msa1296260:CDS
AACAGATCTTACAGCAGCGG+GGG 0.636718 8_3:+55333408 None:intergenic
AGGCTGTTGTCTAGGACATG+TGG 0.639094 8_3:-55332889 Msa1296260:exon
ACAAATGATGTGATTTCTTG+GGG 0.640243 8_3:-55337206 Msa1296260:CDS
GGTCAATGTTAAGAAGTGCA+AGG 0.644391 8_3:-55332820 Msa1296260:three_prime_UTR
TCTCGATGGATAAGTCTGAT+CGG 0.645977 8_3:+55333311 None:intergenic
TCAGCAGCACCAGAGTGCGA+AGG 0.648598 8_3:+55333367 None:intergenic
AATGTGGTACGTCGTGAATG+CGG 0.667673 8_3:-55333046 Msa1296260:CDS
TTTGGCTGAAGGAAGAAGAG+GGG 0.668209 8_3:-55333000 Msa1296260:CDS
GTGGAGATTGACACTGCCAA+GGG 0.681976 8_3:-55332968 Msa1296260:CDS
CAACAGATCTTACAGCAGCG+GGG 0.700402 8_3:+55333407 None:intergenic
TCAGGGCGGTCTCAACATCG+GGG 0.720922 8_3:-55333140 Msa1296260:CDS
TTGCTTGCTTATCTTCAGGG+CGG 0.721162 8_3:-55333154 Msa1296260:CDS
GGATGATGATGATGACAATG+TGG 0.760143 8_3:-55333062 Msa1296260:CDS
TCAGGGTGATCTCAACATCG+GGG 0.765373 8_3:-55333203 Msa1296260:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTATTTATGTATTTATAAA+AGG + chr8_3:55333096-55333115 None:intergenic 10.0%
!! AAAAATAAAAACAAAACATT+TGG + chr8_3:55334139-55334158 None:intergenic 10.0%
!! TTATTGTAAATATACATTAA+TGG - chr8_3:55334513-55334532 Msa1296260:intron 10.0%
!!! TTATATATTTTTTTTTTGAC+TGG - chr8_3:55334751-55334770 Msa1296260:intron 10.0%
!!! ATAATTTTTTTGTTTTTTGA+AGG - chr8_3:55334934-55334953 Msa1296260:intron 10.0%
!! ATTCTAATTAAATTAATTGA+AGG + chr8_3:55335151-55335170 None:intergenic 10.0%
!! ATTTAATAATTAAAATGCAT+CGG - chr8_3:55335475-55335494 Msa1296260:intron 10.0%
!!! AATTATTTAACTTTATCATA+AGG - chr8_3:55336344-55336363 Msa1296260:intron 10.0%
!!! ATTATTTAACTTTATCATAA+GGG - chr8_3:55336345-55336364 Msa1296260:intron 10.0%
!! GAAAATAAATAAAGAAAAAG+GGG + chr8_3:55333001-55333020 None:intergenic 15.0%
!! GGAAAATAAATAAAGAAAAA+GGG + chr8_3:55333002-55333021 None:intergenic 15.0%
!! AGGAAAATAAATAAAGAAAA+AGG + chr8_3:55333003-55333022 None:intergenic 15.0%
!! TTAAAAAAGTCAAATGTATT+TGG + chr8_3:55333680-55333699 None:intergenic 15.0%
!! CAAAAAGAAAAGAAAAAAAA+AGG + chr8_3:55334292-55334311 None:intergenic 15.0%
!! AGAAAAATAAAATATCGAAA+AGG + chr8_3:55334382-55334401 None:intergenic 15.0%
!!! ATATACATTAATGGTTTTTA+TGG - chr8_3:55334522-55334541 Msa1296260:intron 15.0%
!! TTTAATTAATTGCTATGTAA+CGG - chr8_3:55334792-55334811 Msa1296260:intron 15.0%
!!! TTTCTACTTAATTTTAATTG+TGG - chr8_3:55335075-55335094 Msa1296260:intron 15.0%
!! ATTGAAGGTAAATTAAAAAA+CGG + chr8_3:55335136-55335155 None:intergenic 15.0%
!!! ACTATAGTAATTATTTTTTG+TGG + chr8_3:55335324-55335343 None:intergenic 15.0%
!! TAAACTATTAAATCGATTAA+AGG - chr8_3:55335437-55335456 Msa1296260:intron 15.0%
!! AAACTATTAAATCGATTAAA+GGG - chr8_3:55335438-55335457 Msa1296260:intron 15.0%
!!! AATTATCTGTTTTTTTTTGA+AGG - chr8_3:55335539-55335558 Msa1296260:intron 15.0%
!! AAAAATAAAGAATTATCTGT+TGG - chr8_3:55335562-55335581 Msa1296260:intron 15.0%
!!! TTTATTCTCACAAATATTTT+TGG - chr8_3:55335931-55335950 Msa1296260:intron 15.0%
!!! TGTTTTTTCTACAATTTTAA+AGG - chr8_3:55336053-55336072 Msa1296260:intron 15.0%
!!! ACTTTATTTAAAAAGACTAT+CGG + chr8_3:55336449-55336468 None:intergenic 15.0%
!! AAATCATAAAACAATACTTC+TGG + chr8_3:55332664-55332683 None:intergenic 20.0%
!!! AGAAGTAGTTTTATTGTTAT+TGG + chr8_3:55332802-55332821 None:intergenic 20.0%
!!! AAAGTTTTTGTATGAACAAA+AGG + chr8_3:55333023-55333042 None:intergenic 20.0%
!! GTTCATACAAAAACTTTATA+AGG - chr8_3:55333026-55333045 Msa1296260:CDS 20.0%
!! GAAAATAAAACCATAAAAGA+TGG + chr8_3:55333423-55333442 None:intergenic 20.0%
!!! TAGTTTTAAAAACCGATAAA+AGG - chr8_3:55333619-55333638 Msa1296260:intron 20.0%
!!! TAAGAGTTTTGACTTAATAA+TGG + chr8_3:55333806-55333825 None:intergenic 20.0%
!!! GTTTATTAGTTTATGCTTAA+TGG - chr8_3:55333865-55333884 Msa1296260:intron 20.0%
!! AGACTTTATTACATATGAAT+TGG - chr8_3:55333914-55333933 Msa1296260:intron 20.0%
!! TATTATTATGATCCTTCAAT+TGG + chr8_3:55333988-55334007 None:intergenic 20.0%
!! TTGAAGGATCATAATAATAT+TGG - chr8_3:55333989-55334008 Msa1296260:intron 20.0%
!!! TGTTTTATTACTTTTATGTG+TGG - chr8_3:55334235-55334254 Msa1296260:intron 20.0%
!! TTAATTAATTGCTATGTAAC+GGG - chr8_3:55334793-55334812 Msa1296260:intron 20.0%
!!! AAATATTTTTGAACAACTTC+CGG + chr8_3:55334862-55334881 None:intergenic 20.0%
!! TTGAAGGTAAATTAAAAAAC+GGG + chr8_3:55335135-55335154 None:intergenic 20.0%
!!! ACTTACATCATGAAAATTTT+CGG - chr8_3:55335809-55335828 Msa1296260:intron 20.0%
!!! AACAAGCTTTAATGAAATTT+AGG + chr8_3:55335840-55335859 None:intergenic 20.0%
!!! TTTGAAATGTTATATACACA+AGG + chr8_3:55335879-55335898 None:intergenic 20.0%
!!! ATTTTTTTCTTCCAATTTAG+TGG - chr8_3:55336191-55336210 Msa1296260:intron 20.0%
!! TACACTATTGTAAATTTACA+TGG - chr8_3:55336285-55336304 Msa1296260:intron 20.0%
!!! TATATCCTATTATCATTTTG+AGG - chr8_3:55336520-55336539 Msa1296260:intron 20.0%
!! AACAATACACACAAAATATT+AGG - chr8_3:55336548-55336567 Msa1296260:intron 20.0%
!! TAATATCATATTGCATGTTA+GGG + chr8_3:55336828-55336847 None:intergenic 20.0%
!! ATAATATCATATTGCATGTT+AGG + chr8_3:55336829-55336848 None:intergenic 20.0%
!!! AATTATTTTCCTAGTTTTTG+TGG - chr8_3:55337780-55337799 Msa1296260:five_prime_UTR 20.0%
! ACAAAGAGAGAGAAAAAAAA+AGG + chr8_3:55332701-55332720 None:intergenic 25.0%
! TTATTCATTTCCATAAGCTT+TGG - chr8_3:55332756-55332775 Msa1296260:three_prime_UTR 25.0%
! CAAGGAATTGAAAAAAGTTT+AGG + chr8_3:55332961-55332980 None:intergenic 25.0%
! GTATGTTTAATATGGTAACA+AGG + chr8_3:55332979-55332998 None:intergenic 25.0%
!! AAAAAGGGGTATGTTTAATA+TGG + chr8_3:55332987-55333006 None:intergenic 25.0%
!!! TGAAACAAGTTGAATTTTCA+AGG - chr8_3:55333317-55333336 Msa1296260:CDS 25.0%
!!! GAAACAAGTTGAATTTTCAA+GGG - chr8_3:55333318-55333337 Msa1296260:CDS 25.0%
!! TTGTTGTGCTTGAAATATTT+TGG + chr8_3:55333352-55333371 None:intergenic 25.0%
!! TGAACTCATATTAGTATTGA+TGG - chr8_3:55333749-55333768 Msa1296260:intron 25.0%
! TTGGTAAATTTATTTGAGTG+TGG - chr8_3:55333933-55333952 Msa1296260:intron 25.0%
! TGGTAAATTTATTTGAGTGT+GGG - chr8_3:55333934-55333953 Msa1296260:intron 25.0%
!! TTGCCAAATAAATCCATTTT+TGG - chr8_3:55335102-55335121 Msa1296260:intron 25.0%
!! CAACCAAAAATGGATTTATT+TGG + chr8_3:55335108-55335127 None:intergenic 25.0%
!!! CAAATAAATCCATTTTTGGT+TGG - chr8_3:55335106-55335125 Msa1296260:intron 25.0%
! TGAAGGTAAATTAAAAAACG+GGG + chr8_3:55335134-55335153 None:intergenic 25.0%
! ATAAACTTGAGGATTAAGAA+AGG - chr8_3:55335696-55335715 Msa1296260:intron 25.0%
! TTACAATAAAGTGTGCAAAA+AGG - chr8_3:55335764-55335783 Msa1296260:intron 25.0%
! TGTCATATAAAATGAGTTTG+CGG + chr8_3:55336144-55336163 None:intergenic 25.0%
! ATTTACGTAAACCACTAAAT+TGG + chr8_3:55336205-55336224 None:intergenic 25.0%
! TGTTTGTAGTGTATCTAATT+TGG - chr8_3:55336230-55336249 Msa1296260:intron 25.0%
! TAAGGGTAGTTTACTTATTT+CGG - chr8_3:55336362-55336381 Msa1296260:intron 25.0%
! AAATATTCACCAACTTTATG+CGG + chr8_3:55336426-55336445 None:intergenic 25.0%
! ATAATCACAGATAATGAGTT+GGG - chr8_3:55336496-55336515 Msa1296260:intron 25.0%
!! ACCAAATCGACTTTAATTAT+AGG - chr8_3:55336721-55336740 Msa1296260:intron 25.0%
! ACCTATAATTAAAGTCGATT+TGG + chr8_3:55336725-55336744 None:intergenic 25.0%
!! AAATCGACTTTAATTATAGG+TGG - chr8_3:55336724-55336743 Msa1296260:intron 25.0%
! GGTGTGAATTATAAATTCAT+TGG - chr8_3:55336788-55336807 Msa1296260:intron 25.0%
! ATCTTGAATTTCAATTTCTC+AGG - chr8_3:55336941-55336960 Msa1296260:intron 25.0%
! TCTTGAATTTCAATTTCTCA+GGG - chr8_3:55336942-55336961 Msa1296260:intron 25.0%
!!! GAGAACTTTTTAGTTTACAT+TGG - chr8_3:55337633-55337652 Msa1296260:five_prime_UTR 25.0%
! ATACAAATTTCGTAGTTGTT+TGG - chr8_3:55337681-55337700 Msa1296260:five_prime_UTR 25.0%
TGTTCTCTGTTTAGAAGTTA+TGG - chr8_3:55332718-55332737 Msa1296260:three_prime_UTR 30.0%
! CATTTTCGTTTCTTTCTCTT+TGG - chr8_3:55332879-55332898 Msa1296260:exon 30.0%
CAAAGTAGAATTTGTGAAGT+AGG - chr8_3:55333154-55333173 Msa1296260:CDS 30.0%
TCACAAATGATGTGATTTCT+TGG - chr8_3:55333266-55333285 Msa1296260:CDS 30.0%
CACAAATGATGTGATTTCTT+GGG - chr8_3:55333267-55333286 Msa1296260:CDS 30.0%
ACAAATGATGTGATTTCTTG+GGG - chr8_3:55333268-55333287 Msa1296260:CDS 30.0%
TTAAAAACCGATAAAAGGAC+CGG - chr8_3:55333624-55333643 Msa1296260:intron 30.0%
ACAATAAACATTTGACATGC+CGG + chr8_3:55333646-55333665 None:intergenic 30.0%
!! ACTCATATTAGTATTGATGG+TGG - chr8_3:55333752-55333771 Msa1296260:intron 30.0%
GGTAAATTTATTTGAGTGTG+GGG - chr8_3:55333935-55333954 Msa1296260:intron 30.0%
ACGTTGAATGAAAATTAGAG+TGG - chr8_3:55334017-55334036 Msa1296260:intron 30.0%
CGTTGAATGAAAATTAGAGT+GGG - chr8_3:55334018-55334037 Msa1296260:intron 30.0%
!! ACAAAACATTTGGTGTGAAA+AGG + chr8_3:55334129-55334148 None:intergenic 30.0%
!!! TTTTTTTAAGCAGACACATG+TGG + chr8_3:55334196-55334215 None:intergenic 30.0%
! AGATAGTGCTATAGAACTTT+TGG - chr8_3:55334314-55334333 Msa1296260:intron 30.0%
ACAATAATCTAGTCTACATG+CGG + chr8_3:55334500-55334519 None:intergenic 30.0%
TTGTCTTGTATTTGTACGAA+CGG - chr8_3:55334680-55334699 Msa1296260:intron 30.0%
!!! AGTTAGTTCTATCTTTTGAG+TGG - chr8_3:55334970-55334989 Msa1296260:intron 30.0%
!!! GTTAGTTCTATCTTTTGAGT+GGG - chr8_3:55334971-55334990 Msa1296260:intron 30.0%
TCAGTATATACTTTAGTCCT+TGG - chr8_3:55335217-55335236 Msa1296260:intron 30.0%
ATATACTTTAGTCCTTGGTA+TGG - chr8_3:55335222-55335241 Msa1296260:intron 30.0%
TCGAAATTGTCTTGATCAAA+AGG - chr8_3:55335670-55335689 Msa1296260:intron 30.0%
!! TCAAAAGGTTGATAAACTTG+AGG - chr8_3:55335685-55335704 Msa1296260:intron 30.0%
TAGAGTGAGAGATAAAAACA+GGG + chr8_3:55335903-55335922 None:intergenic 30.0%
TTAGAGTGAGAGATAAAAAC+AGG + chr8_3:55335904-55335923 None:intergenic 30.0%
! ACTTATTTCGGTGTGTAATT+AGG - chr8_3:55336374-55336393 Msa1296260:intron 30.0%
! GTGTGTAATTAGGTGTTTTT+CGG - chr8_3:55336384-55336403 Msa1296260:intron 30.0%
! TGTGTAATTAGGTGTTTTTC+GGG - chr8_3:55336385-55336404 Msa1296260:intron 30.0%
TAGAAAAATCCGCATAAAGT+TGG - chr8_3:55336414-55336433 Msa1296260:intron 30.0%
CATAATCACAGATAATGAGT+TGG - chr8_3:55336495-55336514 Msa1296260:intron 30.0%
!!! TCCTATTATCATTTTGAGGT+CGG - chr8_3:55336524-55336543 Msa1296260:intron 30.0%
!! ATCACATGATAACTAGTCTT+TGG - chr8_3:55336767-55336786 Msa1296260:intron 30.0%
GCATATAATAAGTAGCATTG+AGG + chr8_3:55336877-55336896 None:intergenic 30.0%
CTTGAATTTCAATTTCTCAG+GGG - chr8_3:55336943-55336962 Msa1296260:intron 30.0%
TGAAAAATTAACCAGTGAAC+TGG - chr8_3:55337208-55337227 Msa1296260:CDS 30.0%
!! ATTTCGTAGTTGTTTGGTTT+TGG - chr8_3:55337687-55337706 Msa1296260:five_prime_UTR 30.0%
!!! AGTTTTATTGATCTGCTTGT+AGG - chr8_3:55337757-55337776 Msa1296260:five_prime_UTR 30.0%
!!! ATGAAGACGATGTTTTGAAA+TGG - chr8_3:55337805-55337824 Msa1296260:five_prime_UTR 30.0%
!! TTCCATAAGCTTTGGATTCA+TGG - chr8_3:55332764-55332783 Msa1296260:three_prime_UTR 35.0%
ATCCATGAATCCAAAGCTTA+TGG + chr8_3:55332769-55332788 None:intergenic 35.0%
!!! TTCTCTTTGGCTTTTATTGC+TGG - chr8_3:55332892-55332911 Msa1296260:exon 35.0%
!!! TCTCTTTGGCTTTTATTGCT+GGG - chr8_3:55332893-55332912 Msa1296260:exon 35.0%
AGAATTTGTGAAGTAGGTGA+AGG - chr8_3:55333160-55333179 Msa1296260:CDS 35.0%
GAATTTGTGAAGTAGGTGAA+GGG - chr8_3:55333161-55333180 Msa1296260:CDS 35.0%
GGAAGAAGAAAATGTCTAAG+AGG - chr8_3:55333191-55333210 Msa1296260:CDS 35.0%
GAAGAAAATGTCTAAGAGGT+TGG - chr8_3:55333195-55333214 Msa1296260:CDS 35.0%
TCATAGGTCTTGGTCAAAAA+TGG + chr8_3:55333229-55333248 None:intergenic 35.0%
ATCAATCATCTCATAGGTCT+TGG + chr8_3:55333239-55333258 None:intergenic 35.0%
AGGATCATCAATCATCTCAT+AGG + chr8_3:55333245-55333264 None:intergenic 35.0%
GAAATCACATCATTTGTGAG+AGG + chr8_3:55333265-55333284 None:intergenic 35.0%
! AAATGGCAACACTTTTGTTG+TGG - chr8_3:55333294-55333313 Msa1296260:CDS 35.0%
ATGGAACAAGACACTTACAT+AGG + chr8_3:55333404-55333423 None:intergenic 35.0%
!! GTGTCTTGTTCCATCTTTTA+TGG - chr8_3:55333410-55333429 Msa1296260:CDS 35.0%
AATTTATTTGAGTGTGGGGT+AGG - chr8_3:55333939-55333958 Msa1296260:intron 35.0%
ATTTATTTGAGTGTGGGGTA+GGG - chr8_3:55333940-55333959 Msa1296260:intron 35.0%
CACATTACGTAGGATAGAAT+TGG - chr8_3:55334044-55334063 Msa1296260:intron 35.0%
!!! CGTAGTGTTTTGCTATTTCT+TGG - chr8_3:55334161-55334180 Msa1296260:intron 35.0%
! AGTGCTATAGAACTTTTGGT+AGG - chr8_3:55334318-55334337 Msa1296260:intron 35.0%
TGTCTTGTATTTGTACGAAC+GGG - chr8_3:55334681-55334700 Msa1296260:intron 35.0%
! AATTGCTATGTAACGGGAAA+TGG - chr8_3:55334799-55334818 Msa1296260:intron 35.0%
TTGAGGATTAAGAAAGGATG+TGG - chr8_3:55335702-55335721 Msa1296260:intron 35.0%
ACCGACCTCAAAATGATAAT+AGG + chr8_3:55336528-55336547 None:intergenic 35.0%
CCCTCTCTTAAAATTCTCTT+GGG + chr8_3:55337003-55337022 None:intergenic 35.0%
!! CCCAAGAGAATTTTAAGAGA+GGG - chr8_3:55337000-55337019 Msa1296260:intron 35.0%
!! CCAAGAGAATTTTAAGAGAG+GGG - chr8_3:55337001-55337020 Msa1296260:intron 35.0%
! TTTGAGTCTTTTGTTCTCGA+TGG + chr8_3:55337180-55337199 None:intergenic 35.0%
CGAGAACAAAAGACTCAAAA+TGG - chr8_3:55337181-55337200 Msa1296260:CDS 35.0%
AGAATTGCTTGCTTATCTTC+AGG - chr8_3:55337253-55337272 Msa1296260:CDS 35.0%
GAATTGCTTGCTTATCTTCA+GGG - chr8_3:55337254-55337273 Msa1296260:CDS 35.0%
AGAATTGCTTGCTTATCTTC+AGG - chr8_3:55337253-55337272 Msa1296260:CDS 35.0%
GAATTGCTTGCTTATCTTCA+GGG - chr8_3:55337254-55337273 Msa1296260:CDS 35.0%
GATGAAATTAACCGTATCCT+TGG - chr8_3:55337359-55337378 Msa1296260:five_prime_UTR 35.0%
! GAAAGGGTATAAGACTGTTT+GGG - chr8_3:55337450-55337469 Msa1296260:five_prime_UTR 35.0%
! AAAGGGTATAAGACTGTTTG+GGG - chr8_3:55337451-55337470 Msa1296260:five_prime_UTR 35.0%
! GACTTTTACACAGCTATGAT+CGG - chr8_3:55337731-55337750 Msa1296260:five_prime_UTR 35.0%
TCTTCATTGCCACAAAAACT+AGG + chr8_3:55337792-55337811 None:intergenic 35.0%
!! TTGGCTTTTATTGCTGGGAT+TGG - chr8_3:55332898-55332917 Msa1296260:CDS 40.0%
! TGGCTTTTATTGCTGGGATT+GGG - chr8_3:55332899-55332918 Msa1296260:CDS 40.0%
GTGATTTCTTGGGGTGAAAA+TGG - chr8_3:55333277-55333296 Msa1296260:CDS 40.0%
!! GTATTGATGGTGGATCACTT+AGG - chr8_3:55333762-55333781 Msa1296260:intron 40.0%
TTTATTTGAGTGTGGGGTAG+GGG - chr8_3:55333941-55333960 Msa1296260:intron 40.0%
TACGTGGAACTTCCAATTGA+AGG - chr8_3:55333973-55333992 Msa1296260:intron 40.0%
! GCTATAGAACTTTTGGTAGG+TGG - chr8_3:55334321-55334340 Msa1296260:intron 40.0%
! TAGAACTTTTGGTAGGTGGA+TGG - chr8_3:55334325-55334344 Msa1296260:intron 40.0%
GTCTTGTATTTGTACGAACG+GGG - chr8_3:55334682-55334701 Msa1296260:intron 40.0%
TGAACAACTTCCGGATAAGT+TGG + chr8_3:55334853-55334872 None:intergenic 40.0%
AGCTAAGATCTTCCATACCA+AGG + chr8_3:55335237-55335256 None:intergenic 40.0%
GAAAGGATGTGGCTTTCTTA+AGG - chr8_3:55335713-55335732 Msa1296260:intron 40.0%
TTTCAATTTCTCAGGGGTTC+CGG - chr8_3:55336949-55336968 Msa1296260:intron 40.0%
!! GCCCAAGAGAATTTTAAGAG+AGG - chr8_3:55336999-55337018 Msa1296260:intron 40.0%
CCCCTCTCTTAAAATTCTCT+TGG + chr8_3:55337004-55337023 None:intergenic 40.0%
TCTCGATGGATAAGTCTGAT+CGG + chr8_3:55337166-55337185 None:intergenic 40.0%
ATTAACCGTATCCTTGGCAA+AGG - chr8_3:55337365-55337384 Msa1296260:five_prime_UTR 40.0%
CATCATCATCATCCGTATCA+TGG + chr8_3:55337406-55337425 None:intergenic 40.0%
! GGATGATGATGATGACAATG+TGG - chr8_3:55337412-55337431 Msa1296260:five_prime_UTR 40.0%
! GGAAAGGGTATAAGACTGTT+TGG - chr8_3:55337449-55337468 Msa1296260:five_prime_UTR 40.0%
! GTATAAGACTGTTTGGGGTT+TGG - chr8_3:55337456-55337475 Msa1296260:five_prime_UTR 40.0%
CATTGTTGGCACCATCAATT+GGG + chr8_3:55337559-55337578 None:intergenic 40.0%
TCATTGTTGGCACCATCAAT+TGG + chr8_3:55337560-55337579 None:intergenic 40.0%
AACAGCCTTGAACTCATTGT+TGG + chr8_3:55337573-55337592 None:intergenic 40.0%
! GGTCAATGTTAAGAAGTGCA+AGG - chr8_3:55337654-55337673 Msa1296260:five_prime_UTR 40.0%
GAAGTAGGTGAAGGGTAGAT+CGG - chr8_3:55333169-55333188 Msa1296260:CDS 45.0%
AAGTAGGTGAAGGGTAGATC+GGG - chr8_3:55333170-55333189 Msa1296260:CDS 45.0%
! TGACATGCCGGTCCTTTTAT+CGG + chr8_3:55333634-55333653 None:intergenic 45.0%
!! GATGGTGGATCACTTAGGAA+CGG - chr8_3:55333767-55333786 Msa1296260:intron 45.0%
!! ATGGTGGATCACTTAGGAAC+GGG - chr8_3:55333768-55333787 Msa1296260:intron 45.0%
! GTAGGGGCTAGAATTTTACG+TGG - chr8_3:55333957-55333976 Msa1296260:intron 45.0%
! GAGTGGGTTTCACATTACGT+AGG - chr8_3:55334034-55334053 Msa1296260:intron 45.0%
TGTATTTGTACGAACGGGGT+TGG - chr8_3:55334686-55334705 Msa1296260:intron 45.0%
! TGCTATGTAACGGGAAATGG+AGG - chr8_3:55334802-55334821 Msa1296260:intron 45.0%
CACCACTCTACCAACTTATC+CGG - chr8_3:55334840-55334859 Msa1296260:intron 45.0%
!! TTCCGGATAAGTTGGTAGAG+TGG + chr8_3:55334845-55334864 None:intergenic 45.0%
AACGGGGAACCAACCAAAAA+TGG + chr8_3:55335118-55335137 None:intergenic 45.0%
TTGGGCGAATTCCCATTTGT+CGG + chr8_3:55336985-55337004 None:intergenic 45.0%
TCCAACAGATCTTACAGCAG+CGG + chr8_3:55337072-55337091 None:intergenic 45.0%
GCTGTAAGATCTGTTGGAGT+TGG - chr8_3:55337074-55337093 Msa1296260:intron 45.0%
GTAAGATCTGTTGGAGTTGG+CGG - chr8_3:55337077-55337096 Msa1296260:intron 45.0%
TAAGATCTGTTGGAGTTGGC+GGG - chr8_3:55337078-55337097 Msa1296260:intron 45.0%
!! TCTGGTGCTGCTGAAGATAT+GGG - chr8_3:55337116-55337135 Msa1296260:CDS 45.0%
GATATGGGATCAACTTCGAC+CGG - chr8_3:55337131-55337150 Msa1296260:CDS 45.0%
CTTCAGGGTGATCTCAACAT+CGG - chr8_3:55337269-55337288 Msa1296260:CDS 45.0%
TTCAGGGTGATCTCAACATC+GGG - chr8_3:55337270-55337289 Msa1296260:CDS 45.0%
TTGCTTGCTTATCTTCAGGG+CGG - chr8_3:55337257-55337276 Msa1296260:CDS 45.0%
TCGTTCCTTTGCCAAGGATA+CGG + chr8_3:55337373-55337392 None:intergenic 45.0%
ATCCTTGGCAAAGGAACGAA+TGG - chr8_3:55337374-55337393 Msa1296260:five_prime_UTR 45.0%
TCCTTGGCAAAGGAACGAAT+GGG - chr8_3:55337375-55337394 Msa1296260:five_prime_UTR 45.0%
ATCATCATCCGTATCATGGC+TGG + chr8_3:55337402-55337421 None:intergenic 45.0%
AATGTGGTACGTCGTGAATG+CGG - chr8_3:55337428-55337447 Msa1296260:five_prime_UTR 45.0%
GTTTGGCTGAAGGAAGAAGA+GGG - chr8_3:55337473-55337492 Msa1296260:five_prime_UTR 45.0%
TTTGGCTGAAGGAAGAAGAG+GGG - chr8_3:55337474-55337493 Msa1296260:five_prime_UTR 45.0%
! TGGTGCCAACAATGAGTTCA+AGG - chr8_3:55337565-55337584 Msa1296260:five_prime_UTR 45.0%
TGAGTTCAAGGCTGTTGTCT+AGG - chr8_3:55337577-55337596 Msa1296260:five_prime_UTR 45.0%
! GTTGTCTAGGACATGTGGTA+AGG - chr8_3:55337590-55337609 Msa1296260:five_prime_UTR 45.0%
!! AATAGTTTAATTAATTTAAA+AGG + chr8_3:55335426-55335445 None:intergenic 5.0%
!! CGGATAAGTTGGTAGAGTGG+TGG + chr8_3:55334842-55334861 None:intergenic 50.0%
ATTTGTCGGCAGCAGCTTTC+CGG + chr8_3:55336971-55336990 None:intergenic 50.0%
GAAAGCTGCTGCCGACAAAT+GGG - chr8_3:55336971-55336990 Msa1296260:intron 50.0%
CTTGATTGTCGGAAGCAGCT+CGG + chr8_3:55337030-55337049 None:intergenic 50.0%
TGCTTCCGACAATCAAGCGT+CGG - chr8_3:55337033-55337052 Msa1296260:intron 50.0%
GTCTTCCGACGCTTGATTGT+CGG + chr8_3:55337041-55337060 None:intergenic 50.0%
AACAGATCTTACAGCAGCGG+GGG + chr8_3:55337069-55337088 None:intergenic 50.0%
CAACAGATCTTACAGCAGCG+GGG + chr8_3:55337070-55337089 None:intergenic 50.0%
CCAACAGATCTTACAGCAGC+GGG + chr8_3:55337071-55337090 None:intergenic 50.0%
!! CTCTGGTGCTGCTGAAGATA+TGG - chr8_3:55337115-55337134 Msa1296260:CDS 50.0%
TCAGGGTGATCTCAACATCG+GGG - chr8_3:55337271-55337290 Msa1296260:CDS 50.0%
ACCCATTCGTTCCTTTGCCA+AGG + chr8_3:55337379-55337398 None:intergenic 50.0%
GAATGGGTCCAGCCATGATA+CGG - chr8_3:55337391-55337410 Msa1296260:five_prime_UTR 50.0%
GTACGTCGTGAATGCGGAAA+GGG - chr8_3:55337434-55337453 Msa1296260:five_prime_UTR 50.0%
! ACTGTTTGGGGTTTGGCTGA+AGG - chr8_3:55337463-55337482 Msa1296260:five_prime_UTR 50.0%
GGTTTGGCTGAAGGAAGAAG+AGG - chr8_3:55337472-55337491 Msa1296260:five_prime_UTR 50.0%
GGAAGAAGAGGGGAAAGACA+AGG - chr8_3:55337484-55337503 Msa1296260:five_prime_UTR 50.0%
AGAAGAGGGGAAAGACAAGG+TGG - chr8_3:55337487-55337506 Msa1296260:five_prime_UTR 50.0%
GTGGAGATTGACACTGCCAA+GGG - chr8_3:55337506-55337525 Msa1296260:five_prime_UTR 50.0%
! AGGCTGTTGTCTAGGACATG+TGG - chr8_3:55337585-55337604 Msa1296260:five_prime_UTR 50.0%
!! GTACGAACGGGGTTGGTACT+TGG - chr8_3:55334693-55334712 Msa1296260:intron 55.0%
! GTAACGGGAAATGGAGGCAG+TGG - chr8_3:55334808-55334827 Msa1296260:intron 55.0%
GGAAAGCTGCTGCCGACAAA+TGG - chr8_3:55336970-55336989 Msa1296260:intron 55.0%
CCCGCTGCTGTAAGATCTGT+TGG - chr8_3:55337068-55337087 Msa1296260:intron 55.0%
GGGAATTCACCTTCGCACTC+TGG - chr8_3:55337098-55337117 Msa1296260:CDS 55.0%
GGGATCAACTTCGACCGGAT+CGG - chr8_3:55337136-55337155 Msa1296260:CDS 55.0%
ATCAACTTCGACCGGATCGG+TGG - chr8_3:55337139-55337158 Msa1296260:CDS 55.0%
CTTCACGAGTGCCAGTTCAC+TGG + chr8_3:55337222-55337241 None:intergenic 55.0%
CTTCAGGGCGGTCTCAACAT+CGG - chr8_3:55337332-55337351 Msa1296260:five_prime_UTR 55.0%
TTCAGGGCGGTCTCAACATC+GGG - chr8_3:55337333-55337352 Msa1296260:five_prime_UTR 55.0%
GGTACGTCGTGAATGCGGAA+AGG - chr8_3:55337433-55337452 Msa1296260:five_prime_UTR 55.0%
GGTGGAGATTGACACTGCCA+AGG - chr8_3:55337505-55337524 Msa1296260:five_prime_UTR 55.0%
TCTCTTGTGGCAGCTACCCT+TGG + chr8_3:55337525-55337544 None:intergenic 55.0%
AAGGGTAGCTGCCACAAGAG+AGG - chr8_3:55337524-55337543 Msa1296260:five_prime_UTR 55.0%
AGGGTAGCTGCCACAAGAGA+GGG - chr8_3:55337525-55337544 Msa1296260:five_prime_UTR 55.0%
GGGCGTGAAGACCCAATTGA+TGG - chr8_3:55337545-55337564 Msa1296260:five_prime_UTR 55.0%
TCTTACAGCAGCGGGGGACT+GGG + chr8_3:55337063-55337082 None:intergenic 60.0%
ATCTTACAGCAGCGGGGGAC+TGG + chr8_3:55337064-55337083 None:intergenic 60.0%
TCAGCAGCACCAGAGTGCGA+AGG + chr8_3:55337110-55337129 None:intergenic 60.0%
GTCTGATCGGTCCACCGATC+CGG + chr8_3:55337153-55337172 None:intergenic 60.0%
TCAGGGCGGTCTCAACATCG+GGG - chr8_3:55337334-55337353 Msa1296260:five_prime_UTR 60.0%
GGTCTTCACGCCCTCTCTTG+TGG + chr8_3:55337538-55337557 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 55332654 55337842 55332654 ID=Msa1296260;Name=Msa1296260
chr8_3 mRNA 55332654 55337842 55332654 ID=Msa1296260-mRNA-1;Parent=Msa1296260;Name=Msa1296260-mRNA-1;_AED=0.01;_eAED=0.01;_QI=548|1|1|1|1|1|2|244|279
chr8_3 exon 55332654 55333533 55332654 ID=Msa1296260-mRNA-1:exon:15859;Parent=Msa1296260-mRNA-1
chr8_3 exon 55337091 55337842 55337091 ID=Msa1296260-mRNA-1:exon:15858;Parent=Msa1296260-mRNA-1
chr8_3 five_prime_UTR 55337295 55337842 55337295 ID=Msa1296260-mRNA-1:five_prime_utr;Parent=Msa1296260-mRNA-1
chr8_3 CDS 55337091 55337294 55337091 ID=Msa1296260-mRNA-1:cds;Parent=Msa1296260-mRNA-1
chr8_3 CDS 55332898 55333533 55332898 ID=Msa1296260-mRNA-1:cds;Parent=Msa1296260-mRNA-1
chr8_3 three_prime_UTR 55332654 55332897 55332654 ID=Msa1296260-mRNA-1:three_prime_utr;Parent=Msa1296260-mRNA-1
Gene Sequence

>Msa1296260

ATGTCTAAGAGGTTGGCAGCAGCACCATTTTTGACCAAGACCTATGAGATGATTGATGATCCTCTCACAAATGATGTGATTTCTTGGGGTGAAAATGGCAACACTTTTGTTGTGGTGAAACAAGTTGAATTTTCAAGGGATTTGCTTCCAAAATATTTCAAGCACAACAATTTCTCAAGCTTTGTTCGTCAACTTAACACCTATGGGTTCCGGAAAGCTGCTGCCGACAAATGGGAATTCGCCCAAGAGAATTTTAAGAGAGGGGAGACCGAGCTGCTTCCGACAATCAAGCGTCGGAAGACCCAGTCCCCCGCTGCTGTAAGATCTGTTGGAGTTGGCGGGAATTCACCTTCGCACTCTGGTGCTGCTGAAGATATGGGATCAACTTCGACCGGATCGGTGGACCGATCAGACTTATCCATCGAGAACAAAAGACTCAAAATGGATAATGAAAAATTAACCAGTGAACTGGCACTCGTGAAGAAAAAGTGTGAAGAATTGCTTGCTTATCTTCAGGGTGATCTCAACATCGGGGCACTTGCAAAGAAAAAGTGTGAAGAATTGCTTGCTTATCTTCAGGGCGGTCTCAACATCGGGGCTGATGAAATTAACCGTATCCTTGGCAAAGGAACGAATGGGTCCAGCCATGATACGGATGATGATGATGACAATGTGGTACGTCGTGAATGCGGAAAGGGTATAAGACTGTTTGGGGTTTGGCTGAAGGAAGAAGAGGGGAAAGACAAGGTGGAGATTGACACTGCCAAGGGTAGCTGCCACAAGAGAGGGCGTGAAGACCCAATTGATGGTGCCAACAATGAGTTCAAGGCTGTTGTCTAG
Protein sequence

>Msa1296260

MSKRLAAAPFLTKTYEMIDDPLTNDVISWGENGNTFVVVKQVEFSRDLLPKYFKHNNFSSFVRQLNTYGFRKAAADKWEFAQENFKRGETELLPTIKRRKTQSPAAVRSVGVGGNSPSHSGAAEDMGSTSTGSVDRSDLSIENKRLKMDNEKLTSELALVKKKCEELLAYLQGDLNIGALAKKKCEELLAYLQGGLNIGADEINRILGKGTNGSSHDTDDDDDNVVRRECGKGIRLFGVWLKEEEGKDKVEIDTAKGSCHKRGREDPIDGANNEFKAVV*