AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1080640


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 120 sgRNAs with CRISPR-Local

Find 291 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCATTCAAATGAATTGTT+TGG 0.265901 7_2:+80217230 Msa1080640:five_prime_UTR
CCCAATTAGGCACTTGCTTT+GGG 0.305358 7_2:+80219564 Msa1080640:intron
CCCAATTAGGCACTTGCTTT+GGG 0.305358 7_2:+80219760 Msa1080640:intron
AGTAAGTTTCATGTTGTCTA+TGG 0.309757 7_2:-80217390 None:intergenic
GCCCAATTAGGCACTTGCTT+TGG 0.322357 7_2:+80219563 Msa1080640:intron
GCCCAATTAGGCACTTGCTT+TGG 0.322357 7_2:+80219759 Msa1080640:intron
AAGGCTGCCCAAGGCTGGTT+TGG 0.323136 7_2:-80221573 None:intergenic
TTCATTCAAATGAATTGTTT+GGG 0.330603 7_2:+80217231 Msa1080640:five_prime_UTR
GGCACTTGCTTTGGGAGATC+AGG 0.334429 7_2:+80219572 Msa1080640:intron
GGCACTTGCTTTGGGAGATC+AGG 0.334429 7_2:+80219768 Msa1080640:intron
GCTTTCAACACAATATTGTT+TGG 0.335248 7_2:+80217253 Msa1080640:five_prime_UTR
TTGTTTCATGAATTGCCTTT+TGG 0.339837 7_2:+80221629 Msa1080640:three_prime_UTR
ATGATCCACATCCACAAATA+TGG 0.340272 7_2:-80221503 None:intergenic
GGGGCTGCCAAGACTGTAGT+GGG 0.349111 7_2:+80218220 Msa1080640:CDS
CTCAAGGAAAATCGTATCTA+AGG 0.357147 7_2:+80218774 Msa1080640:CDS
GCTAGAAAACTTGAGATAAC+AGG 0.361484 7_2:-80221762 None:intergenic
TCATCTGTAGCCATGCTTGC+AGG 0.369312 7_2:-80219606 None:intergenic
CTTTCAACACAATATTGTTT+GGG 0.372295 7_2:+80217254 Msa1080640:five_prime_UTR
GCTTCTAAATGTAGCCTCAT+TGG 0.379793 7_2:+80218598 Msa1080640:intron
GGCTGCCAAGACTGTAGTGG+GGG 0.390292 7_2:+80218222 Msa1080640:CDS
AACACAGTTCAGAGGGCGCC+AGG 0.390682 7_2:-80221800 None:intergenic
TCAACTGTAGCCATGCTTGC+AGG 0.392692 7_2:-80219411 None:intergenic
ATCGGGCTGTCGAGGCTTAT+AGG 0.393390 7_2:+80218740 Msa1080640:CDS
AGTTTGCATCTTTGTTTAAG+TGG 0.398316 7_2:-80221872 None:intergenic
TTGGACGCGGATATTGTATT+GGG 0.404574 7_2:-80217277 None:intergenic
AAGATCCGATTCCGCTCTAT+AGG 0.405390 7_2:+80217306 Msa1080640:five_prime_UTR
GGTTGCTTAAAGTCTGGTTA+TGG 0.409173 7_2:-80219900 None:intergenic
ATTCTTTCAAAGAAGGAGAA+AGG 0.416273 7_2:-80217037 None:intergenic
CTGTCGATTGACAAGAAAAC+TGG 0.416287 7_2:-80217465 None:intergenic
CTGTCGATTGACAAGAAAAC+TGG 0.416287 7_2:+80218807 Msa1080640:CDS
TTGAACGTTAACATTGTTCA+AGG 0.416538 7_2:-80221592 None:intergenic
ATTGGACGCGGATATTGTAT+TGG 0.418785 7_2:-80217278 None:intergenic
ACATCCACAAATATGGCATC+AGG 0.420855 7_2:-80221496 None:intergenic
ACCATGGGAGATATGTTCAT+TGG 0.420881 7_2:+80221533 Msa1080640:CDS
TGGATGTTTGAGTCCTTGTA+TGG 0.427317 7_2:+80221649 Msa1080640:three_prime_UTR
GGGCTGCCAAGACTGTAGTG+GGG 0.430289 7_2:+80218221 Msa1080640:CDS
GCTACTGCCAAGACTGCACT+GGG 0.431898 7_2:+80218199 Msa1080640:CDS
CAGACTTTAAGCAACCTCTA+TGG 0.433770 7_2:+80219907 Msa1080640:CDS
TTGCAAATTATCGTGTAGTA+AGG 0.436109 7_2:-80219866 None:intergenic
CATAGAGGTTGCTTAAAGTC+TGG 0.443079 7_2:-80219906 None:intergenic
AAAGGAGGAGAAAGGATGTT+GGG 0.446270 7_2:-80217078 None:intergenic
GTTCTTTAACCAGGGTGATC+GGG 0.447646 7_2:+80218723 Msa1080640:intron
TGCTGTGGTTCGGAAAGTTA+TGG 0.448779 7_2:+80221355 Msa1080640:CDS
AACTTACTCCTAATCTTGTA+AGG 0.449123 7_2:+80217405 Msa1080640:CDS
AACTTACTCCTAATCTTGTA+AGG 0.449123 7_2:-80218871 None:intergenic
TGAATGATCCAAACCAGCCT+TGG 0.449389 7_2:+80221565 Msa1080640:exon
TGTTCTTTAACCAGGGTGAT+CGG 0.449896 7_2:+80218722 Msa1080640:intron
GTTTGCATCTTTGTTTAAGT+GGG 0.452402 7_2:-80221871 None:intergenic
AAAGAAGGAGAAAGGATGTT+GGG 0.453170 7_2:-80217029 None:intergenic
CCGCTCCTATAGAGCGGAAT+CGG 0.463429 7_2:-80217311 None:intergenic
TTGGGAGATCAGGGTGCTGA+GGG 0.469726 7_2:+80219778 Msa1080640:CDS
ATTCTTTCAAAGGAGGAGAA+AGG 0.472113 7_2:-80217086 None:intergenic
TGCTGAGGAGCCTGCAAGCA+TGG 0.472976 7_2:+80219596 Msa1080640:CDS
GAATGATCCAAACCAGCCTT+GGG 0.477059 7_2:+80221566 Msa1080640:exon
TGTTCAAGGCTGCCCAAGGC+TGG 0.477332 7_2:-80221578 None:intergenic
CCGAACCACAGCAGTACTCT+TGG 0.477785 7_2:-80221345 None:intergenic
TTTGGCAGGGTTTAAGAGGA+AGG 0.479372 7_2:+80219359 Msa1080640:intron
ACGATAATTTGCAAGAATTG+AGG 0.484412 7_2:+80219875 Msa1080640:CDS
GGCTACTGCCAAGACTGCAC+TGG 0.484854 7_2:+80218198 Msa1080640:CDS
TTTGGGGCTTGATGTGGAGT+TGG 0.485292 7_2:+80219813 Msa1080640:CDS
GCTGTGGTTCGGAAAGTTAT+GGG 0.485733 7_2:+80221356 Msa1080640:CDS
GATCACCTTGGTTAAAGAAC+AGG 0.486086 7_2:+80217552 Msa1080640:CDS
GCACTTGCTTTGGGAGATCA+GGG 0.489295 7_2:+80219573 Msa1080640:CDS
GCACTTGCTTTGGGAGATCA+GGG 0.489295 7_2:+80219769 Msa1080640:CDS
AGAGCGGAATCGGATCTTTG+TGG 0.496543 7_2:-80217301 None:intergenic
TACTTAGGATGATGTTGCTG+TGG 0.498806 7_2:+80218141 Msa1080640:intron
CCAGGGTGATCGGGCTGTCG+AGG 0.499757 7_2:+80218732 Msa1080640:intron
ATACCCTGATGCCATATTTG+TGG 0.500174 7_2:+80221492 Msa1080640:CDS
TGATGCCATATTTGTGGATG+TGG 0.502868 7_2:+80221498 Msa1080640:CDS
TGGCAGGGTTTAAGAGGAAG+GGG 0.506765 7_2:+80219361 Msa1080640:intron
CAAAGAAGGAGAAAGGATGT+TGG 0.517385 7_2:-80217030 None:intergenic
AATTATCGTGTAGTAAGGTC+AGG 0.520177 7_2:-80219861 None:intergenic
AGGTCATTAAAATCTGCAAA+TGG 0.520606 7_2:-80219841 None:intergenic
CAAGGACTCAAACATCCAAA+AGG 0.523797 7_2:-80221644 None:intergenic
GTTAAGAAAACACAGTTCAG+AGG 0.526834 7_2:-80221808 None:intergenic
TTGACAAGAAAACTGGCTAC+TGG 0.527466 7_2:+80218814 Msa1080640:CDS
TCCCATCTTCGTCTCAAAAG+TGG 0.527558 7_2:+80221840 Msa1080640:three_prime_UTR
CGATTCCGCTCTATAGGAGC+GGG 0.529232 7_2:+80217312 Msa1080640:five_prime_UTR
TCTTACCTGTTCTTTAACCA+AGG 0.529640 7_2:-80217557 None:intergenic
GCTGCCAAGACTGTAGTGGG+GGG 0.532385 7_2:+80218223 Msa1080640:CDS
CCAAGAGTACTGCTGTGGTT+CGG 0.534633 7_2:+80221345 Msa1080640:CDS
TTGGCAGGGTTTAAGAGGAA+GGG 0.538562 7_2:+80219360 Msa1080640:intron
TTTGGGAGATCAGGGTGCTG+AGG 0.543639 7_2:+80219777 Msa1080640:CDS
TACTGCCAAGACTGCACTGG+GGG 0.545287 7_2:+80218201 Msa1080640:CDS
AGCTCTTATCTAATCCGCCC+TGG 0.547269 7_2:+80221782 Msa1080640:three_prime_UTR
TTGACAAGAAAACTGGCTAC+TGG 0.548510 7_2:-80217458 None:intergenic
ATAGGCAGAAAGAGCGCTCA+AGG 0.550175 7_2:+80218758 Msa1080640:CDS
TACTGGTAGAAAGCTCATGC+TGG 0.551437 7_2:-80217441 None:intergenic
CAAAGGAGGAGAAAGGATGT+TGG 0.554229 7_2:-80217079 None:intergenic
GGAATCGGATCTTTGTGGAT+TGG 0.556999 7_2:-80217296 None:intergenic
TGTTCTTTAACCAAGGTGAT+CGG 0.568372 7_2:-80217550 None:intergenic
TGATGCGCACCTCAATGCGC+AGG 0.581755 7_2:+80219626 Msa1080640:CDS
TGAATACCTCCTGCGCATTG+AGG 0.582027 7_2:-80219635 None:intergenic
TGAATACCTCATGCGCATTG+AGG 0.584509 7_2:-80219440 None:intergenic
TTTGGGAGATCAGGGTGCTG+AGG 0.589123 7_2:+80219581 Msa1080640:CDS
GGTTACAAGAAAGCTCATGC+TGG 0.591204 7_2:+80218835 Msa1080640:CDS
CTGTAGCCATGCTTGCAGGA+AGG 0.591620 7_2:-80219407 None:intergenic
ACATTGTTCAAGGCTGCCCA+AGG 0.592741 7_2:-80221582 None:intergenic
AGAACTATTATCACCATACA+AGG 0.595178 7_2:-80221662 None:intergenic
GGATCTTTGTGGATTGGACG+CGG 0.600194 7_2:-80217290 None:intergenic
GCGTAATATGCTCTCCATAG+AGG 0.601369 7_2:-80219921 None:intergenic
TTAAGAAAACACAGTTCAGA+GGG 0.601755 7_2:-80221807 None:intergenic
ACTTACTCCTAATCTTGTAA+GGG 0.606978 7_2:+80217406 Msa1080640:CDS
ACTTACTCCTAATCTTGTAA+GGG 0.606978 7_2:-80218870 None:intergenic
TCCAATGAACATATCTCCCA+TGG 0.607469 7_2:-80221534 None:intergenic
TGGATCATGTTGATTACCAT+GGG 0.612076 7_2:+80221518 Msa1080640:CDS
ACACAGTTCAGAGGGCGCCA+GGG 0.612347 7_2:-80221799 None:intergenic
CCTCAACAGTCCGATCACCT+TGG 0.613422 7_2:+80217540 Msa1080640:intron
GTAAGCAACGAGTGTGTCGA+AGG 0.614214 7_2:-80217366 None:intergenic
GTGGATCATGTTGATTACCA+TGG 0.635272 7_2:+80221517 Msa1080640:CDS
CATCCACAAATATGGCATCA+GGG 0.635750 7_2:-80221495 None:intergenic
CAGTTCAGAGGGCGCCAGGG+CGG 0.639291 7_2:-80221796 None:intergenic
CCGATTCCGCTCTATAGGAG+CGG 0.648882 7_2:+80217311 Msa1080640:five_prime_UTR
TTCAAACTAAAGAACCAATG+AGG 0.650366 7_2:-80218612 None:intergenic
GAGAGCATATTACGCGCACT+CGG 0.654391 7_2:+80219929 Msa1080640:CDS
TGCGCACCTCAATGCGCAGG+AGG 0.656178 7_2:+80219629 Msa1080640:CDS
TGCGCACCTCAATGCGCATG+AGG 0.660464 7_2:+80219434 Msa1080640:CDS
AAATTCCCGCTCCTATAGAG+CGG 0.661761 7_2:-80217317 None:intergenic
CTACTGCCAAGACTGCACTG+GGG 0.680684 7_2:+80218200 Msa1080640:CDS
AATCACCAAGAGTACTGCTG+TGG 0.685662 7_2:+80221340 Msa1080640:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAATCATTGTTTTTTTTT+AGG + chr7_2:80217140-80217159 Msa1080640:five_prime_UTR 10.0%
!! AAAAAAAAATATATATTGCT+GGG - chr7_2:80217175-80217194 None:intergenic 10.0%
!! TAAAAAAAAATATATATTGC+TGG - chr7_2:80217176-80217195 None:intergenic 10.0%
!!! TCTTAAAATTAAGAAATTTT+TGG + chr7_2:80219294-80219313 Msa1080640:intron 10.0%
!! TAAATAAAAAAACAAAACAA+AGG - chr7_2:80219496-80219515 None:intergenic 10.0%
!! AAATAAAAAAAACAAAACAA+AGG - chr7_2:80219691-80219710 None:intergenic 10.0%
!! AAAAAAACAATGATTATTCT+CGG - chr7_2:80217138-80217157 None:intergenic 15.0%
!!! AATTTTAAATGTTTATTGAG+CGG + chr7_2:80217335-80217354 Msa1080640:five_prime_UTR 15.0%
!! AAAGGAAGAAATTAAAAAAA+AGG - chr7_2:80218350-80218369 None:intergenic 15.0%
!!! TGAAAATAAAACTTTTGAAA+AGG - chr7_2:80218368-80218387 None:intergenic 15.0%
!! AGAAAAAAAAAAAAAAACAG+TGG - chr7_2:80219121-80219140 None:intergenic 15.0%
!!! ATATATTATTTTTTTTTGGC+AGG + chr7_2:80219345-80219364 Msa1080640:intron 15.0%
!!! TATATTATTTTTTTTTGGCA+GGG + chr7_2:80219346-80219365 Msa1080640:intron 15.0%
!! AATAAAAATATTCCAGAATA+AGG - chr7_2:80219993-80220012 None:intergenic 15.0%
!! TGAAAATAGGTAATTTAAAT+TGG + chr7_2:80220774-80220793 Msa1080640:intron 15.0%
!!! AAGTTTTTAAACAAAATAGT+TGG - chr7_2:80220996-80221015 None:intergenic 15.0%
!!! TTTTCTTTTCATTCTTTCAA+AGG - chr7_2:80217099-80217118 None:intergenic 20.0%
!! TTTCATTCAAATGAATTGTT+TGG + chr7_2:80217230-80217249 Msa1080640:five_prime_UTR 20.0%
!! TTCATTCAAATGAATTGTTT+GGG + chr7_2:80217231-80217250 Msa1080640:five_prime_UTR 20.0%
!! GAATTAGAATAAGAATATCA+CGG + chr7_2:80217578-80217597 Msa1080640:intron 20.0%
!! AATTAGAATAAGAATATCAC+GGG + chr7_2:80217579-80217598 Msa1080640:intron 20.0%
!! CAAACATACAAAAAATTAGT+AGG - chr7_2:80218118-80218137 None:intergenic 20.0%
!!! TTTGTATGTTTGTTTTACTT+AGG + chr7_2:80218126-80218145 Msa1080640:intron 20.0%
!! GAATTAGAATAAGAATATCA+CGG - chr7_2:80217578-80217597 None:intergenic 20.0%
!!! TATTTTCATCAATGTTTAGA+AGG + chr7_2:80219072-80219091 Msa1080640:intron 20.0%
!!! TCTTTTCTTTATCCTTTTAT+AGG + chr7_2:80219146-80219165 Msa1080640:intron 20.0%
!! CTAAATTCTAATCCTATAAA+AGG - chr7_2:80219161-80219180 None:intergenic 20.0%
!! ATAGGATTAGAATTTAGAAA+TGG + chr7_2:80219164-80219183 Msa1080640:intron 20.0%
!! TTTATACTTGAATTAAGTTC+AGG + chr7_2:80219708-80219727 Msa1080640:intron 20.0%
!! TTATACTTGAATTAAGTTCA+GGG + chr7_2:80219709-80219728 Msa1080640:intron 20.0%
!!! AAAGTAAGTCGTTTAATTTT+TGG + chr7_2:80219956-80219975 Msa1080640:intron 20.0%
!!! AAGTAAGTCGTTTAATTTTT+GGG + chr7_2:80219957-80219976 Msa1080640:intron 20.0%
!! TAGAATACATTAAAAGAACA+AGG - chr7_2:80220287-80220306 None:intergenic 20.0%
!!! TGAAGAATTGGATAAAATTT+TGG + chr7_2:80220310-80220329 Msa1080640:intron 20.0%
!! ATATACAAACTAGTTAATGA+GGG + chr7_2:80220383-80220402 Msa1080640:intron 20.0%
!! AATGATTATCACTAATGAAT+GGG - chr7_2:80220452-80220471 None:intergenic 20.0%
!! TAATGATTATCACTAATGAA+TGG - chr7_2:80220453-80220472 None:intergenic 20.0%
!! AGGTAATTTAAATTGGTTAA+TGG + chr7_2:80220781-80220800 Msa1080640:intron 20.0%
!! TTATTTAACAGTGAATAATC+TGG + chr7_2:80221180-80221199 Msa1080640:intron 20.0%
!! ACAAAAGTTTAAAAATGAAC+AGG - chr7_2:80221241-80221260 None:intergenic 20.0%
!!! TCTTGATTTCTTTTGATATT+TGG + chr7_2:80221739-80221758 Msa1080640:three_prime_UTR 20.0%
!! TCTTTTCATTCTTTCAAAGA+AGG - chr7_2:80217047-80217066 None:intergenic 25.0%
! CTTTCAACACAATATTGTTT+GGG + chr7_2:80217254-80217273 Msa1080640:five_prime_UTR 25.0%
! ATTAGAATAAGAATATCACG+GGG + chr7_2:80217580-80217599 Msa1080640:intron 25.0%
! CAGTTATAGACATAGAAAAT+AGG - chr7_2:80218027-80218046 None:intergenic 25.0%
!! CTATAACTGTTTGTAGATTT+TGG + chr7_2:80218038-80218057 Msa1080640:intron 25.0%
! TATATGTTCATTCATGTTGA+AGG + chr7_2:80218256-80218275 Msa1080640:intron 25.0%
!!! ATATAGCTTTTTGACTGTTT+CGG + chr7_2:80218298-80218317 Msa1080640:intron 25.0%
!!! GTTGTTTTTTAAACAAATCG+TGG + chr7_2:80218320-80218339 Msa1080640:intron 25.0%
!! TTTTCCAGAATATACATATG+CGG - chr7_2:80218514-80218533 None:intergenic 25.0%
! TTTATACCTGAATTAAGTTC+AGG + chr7_2:80219512-80219531 Msa1080640:intron 25.0%
! TTATACCTGAATTAAGTTCA+GGG + chr7_2:80219513-80219532 Msa1080640:intron 25.0%
! GGATATAAATAACCTTATTC+TGG + chr7_2:80219978-80219997 Msa1080640:intron 25.0%
! AGTGCAACATATGATTAAAA+AGG - chr7_2:80220030-80220049 None:intergenic 25.0%
!! ATATGTTGCACTTGATTTTT+GGG + chr7_2:80220038-80220057 Msa1080640:intron 25.0%
!!! TTTTAGTATTTGTCTTGTTG+CGG + chr7_2:80220151-80220170 Msa1080640:intron 25.0%
!! TGTATTCTAAGTTGAAGAAT+TGG + chr7_2:80220298-80220317 Msa1080640:intron 25.0%
!! GGAATACTTACTAAATTTTC+TGG + chr7_2:80220354-80220373 Msa1080640:intron 25.0%
! CATATACAAACTAGTTAATG+AGG + chr7_2:80220382-80220401 Msa1080640:intron 25.0%
! ATGATTATCACTAATGAATG+GGG - chr7_2:80220451-80220470 None:intergenic 25.0%
! AGTAACTATATATACTAGCA+AGG - chr7_2:80220660-80220679 None:intergenic 25.0%
! TAGTATCATGGAAAACTATT+AGG - chr7_2:80220716-80220735 None:intergenic 25.0%
! GTTTGTTCTTATGTTTGTAA+AGG + chr7_2:80220803-80220822 Msa1080640:intron 25.0%
! AAATTCTAAGTAATCATCAC+AGG - chr7_2:80220880-80220899 None:intergenic 25.0%
! TTCTTAATCACAAGATAGAT+AGG - chr7_2:80221025-80221044 None:intergenic 25.0%
! TTCACTGTTAAATAAATTCC+AGG - chr7_2:80221175-80221194 None:intergenic 25.0%
ATTCTTTCAAAGAAGGAGAA+AGG - chr7_2:80217040-80217059 None:intergenic 30.0%
! TCTTTTCATTCTTTCAAAGG+AGG - chr7_2:80217096-80217115 None:intergenic 30.0%
GCTTTCAACACAATATTGTT+TGG + chr7_2:80217253-80217272 Msa1080640:five_prime_UTR 30.0%
AGTAAGTTTCATGTTGTCTA+TGG - chr7_2:80217393-80217412 None:intergenic 30.0%
AACTTACTCCTAATCTTGTA+AGG + chr7_2:80217405-80217424 Msa1080640:CDS 30.0%
ACTTACTCCTAATCTTGTAA+GGG + chr7_2:80217406-80217425 Msa1080640:CDS 30.0%
AAAACCTAAAACACTACCAT+TGG - chr7_2:80217628-80217647 None:intergenic 30.0%
TCTGTTAATCTATCTATTGC+AGG + chr7_2:80217952-80217971 Msa1080640:intron 30.0%
! AATCTATCTATTGCAGGTTT+TGG + chr7_2:80217958-80217977 Msa1080640:intron 30.0%
ACCTGAGAACAAAATTTAAG+TGG + chr7_2:80218466-80218485 Msa1080640:intron 30.0%
! TCCACTTAAATTTTGTTCTC+AGG - chr7_2:80218470-80218489 None:intergenic 30.0%
AATACCGCATATGTATATTC+TGG + chr7_2:80218507-80218526 Msa1080640:intron 30.0%
ATGAAGCTTAGGTCAAAATT+TGG - chr7_2:80218556-80218575 None:intergenic 30.0%
!! AATTTTGACCTAAGCTTCAT+TGG + chr7_2:80218556-80218575 Msa1080640:intron 30.0%
TTAAAGAACCAATGAAGCTT+AGG - chr7_2:80218567-80218586 None:intergenic 30.0%
TTCAAACTAAAGAACCAATG+AGG - chr7_2:80218615-80218634 None:intergenic 30.0%
ACTTACTCCTAATCTTGTAA+GGG - chr7_2:80217406-80217425 None:intergenic 30.0%
AACTTACTCCTAATCTTGTA+AGG - chr7_2:80217405-80217424 None:intergenic 30.0%
! TTTTATGTGTTTGAGTGATG+AGG + chr7_2:80218992-80219011 Msa1080640:intron 30.0%
TTTATGTGTTTGAGTGATGA+GGG + chr7_2:80218993-80219012 Msa1080640:intron 30.0%
AAGACAAATCTTAGCATCTT+AGG + chr7_2:80219028-80219047 Msa1080640:intron 30.0%
TTTGTAGTTTGAAAGCGAAT+TGG + chr7_2:80219197-80219216 Msa1080640:intron 30.0%
TTGTAGTTTGAAAGCGAATT+GGG + chr7_2:80219198-80219217 Msa1080640:intron 30.0%
ACCAGAACCATACATATTAA+GGG - chr7_2:80219266-80219285 None:intergenic 30.0%
TATACCTGAATTAAGTTCAG+GGG + chr7_2:80219514-80219533 Msa1080640:intron 30.0%
!!! TGAGGGATTTGATTTTGATT+TGG + chr7_2:80219795-80219814 Msa1080640:CDS 30.0%
!!! GAGGGATTTGATTTTGATTT+GGG + chr7_2:80219796-80219815 Msa1080640:CDS 30.0%
!!! AGGGATTTGATTTTGATTTG+GGG + chr7_2:80219797-80219816 Msa1080640:CDS 30.0%
AGGTCATTAAAATCTGCAAA+TGG - chr7_2:80219844-80219863 None:intergenic 30.0%
TTGCAAATTATCGTGTAGTA+AGG - chr7_2:80219869-80219888 None:intergenic 30.0%
! ACGATAATTTGCAAGAATTG+AGG + chr7_2:80219875-80219894 Msa1080640:CDS 30.0%
! CATATGTTGCACTTGATTTT+TGG + chr7_2:80220037-80220056 Msa1080640:intron 30.0%
GACAAATACTAAAACAGAGT+TGG - chr7_2:80220145-80220164 None:intergenic 30.0%
!! AGTTTTTCAGAGTAGTATCA+TGG - chr7_2:80220728-80220747 None:intergenic 30.0%
TATGTTTGTAAAGGCCATAA+TGG + chr7_2:80220812-80220831 Msa1080640:intron 30.0%
AAAATTAGCGTGCTTGTATT+GGG - chr7_2:80220907-80220926 None:intergenic 30.0%
AAAAATTAGCGTGCTTGTAT+TGG - chr7_2:80220908-80220927 None:intergenic 30.0%
AGTACAATCAAAACTTCAAC+TGG - chr7_2:80221099-80221118 None:intergenic 30.0%
ACTTGTAAAGGAAGGAAAAA+TGG - chr7_2:80221139-80221158 None:intergenic 30.0%
TAAATAAATTCCAGGACTTC+TGG - chr7_2:80221167-80221186 None:intergenic 30.0%
TAAATGTGAAGTACGTTTAG+TGG + chr7_2:80221215-80221234 Msa1080640:intron 30.0%
TAATTACACATAACGACACT+AGG - chr7_2:80221266-80221285 None:intergenic 30.0%
TTGAACGTTAACATTGTTCA+AGG - chr7_2:80221595-80221614 None:intergenic 30.0%
! TTGTTTCATGAATTGCCTTT+TGG + chr7_2:80221629-80221648 Msa1080640:three_prime_UTR 30.0%
AGAACTATTATCACCATACA+AGG - chr7_2:80221665-80221684 None:intergenic 30.0%
TTAAGAAAACACAGTTCAGA+GGG - chr7_2:80221810-80221829 None:intergenic 30.0%
! GTTTGCATCTTTGTTTAAGT+GGG - chr7_2:80221874-80221893 None:intergenic 30.0%
! AGTTTGCATCTTTGTTTAAG+TGG - chr7_2:80221875-80221894 None:intergenic 30.0%
AAAGAAGGAGAAAGGATGTT+GGG - chr7_2:80217032-80217051 None:intergenic 35.0%
ATTCTTTCAAAGGAGGAGAA+AGG - chr7_2:80217089-80217108 None:intergenic 35.0%
! CTTTTCTCCCTTACAAGATT+AGG - chr7_2:80218863-80218882 None:intergenic 35.0%
CTCAAGGAAAATCGTATCTA+AGG - chr7_2:80218774-80218793 None:intergenic 35.0%
TGTTCTTTAACCAAGGTGAT+CGG - chr7_2:80217553-80217572 None:intergenic 35.0%
TCTTACCTGTTCTTTAACCA+AGG - chr7_2:80218715-80218734 None:intergenic 35.0%
!! TCTTCCAATGGTAGTGTTTT+AGG + chr7_2:80217621-80217640 Msa1080640:intron 35.0%
AGATCTGTTATTGCAGATCT+TGG + chr7_2:80217694-80217713 Msa1080640:intron 35.0%
AAACCAAGATCTGCAATAAC+AGG - chr7_2:80217700-80217719 None:intergenic 35.0%
TGAAAAAGCTGAGAGTGATT+TGG + chr7_2:80218177-80218196 Msa1080640:CDS 35.0%
TTCTTACCTGTTCTTTAACC+AGG + chr7_2:80218714-80218733 Msa1080640:intron 35.0%
TCTTACCTGTTCTTTAACCA+GGG + chr7_2:80218715-80218734 Msa1080640:intron 35.0%
CTCAAGGAAAATCGTATCTA+AGG + chr7_2:80218774-80218793 Msa1080640:CDS 35.0%
! CTTTTCTCCCTTACAAGATT+AGG + chr7_2:80218863-80218882 Msa1080640:CDS 35.0%
TTATGTGTTTGAGTGATGAG+GGG + chr7_2:80218994-80219013 Msa1080640:intron 35.0%
CAAATCTTAGCATCTTAGGT+AGG + chr7_2:80219032-80219051 Msa1080640:intron 35.0%
TTAGGTAGGTTTAGTGATTG+TGG + chr7_2:80219046-80219065 Msa1080640:intron 35.0%
TATGCTCTTGTACTTACAAG+AGG + chr7_2:80219221-80219240 Msa1080640:intron 35.0%
TACATATTAAGGGACCAACT+AGG - chr7_2:80219256-80219275 None:intergenic 35.0%
AGTTGGTCCCTTAATATGTA+TGG + chr7_2:80219256-80219275 Msa1080640:intron 35.0%
TCCCTTAATATGTATGGTTC+TGG + chr7_2:80219262-80219281 Msa1080640:intron 35.0%
CACCAGAACCATACATATTA+AGG - chr7_2:80219267-80219286 None:intergenic 35.0%
!!! TTTTTTTGGCAGGGTTTAAG+AGG + chr7_2:80219355-80219374 Msa1080640:intron 35.0%
ATACCTGAATTAAGTTCAGG+GGG + chr7_2:80219515-80219534 Msa1080640:intron 35.0%
AATTATCGTGTAGTAAGGTC+AGG - chr7_2:80219864-80219883 None:intergenic 35.0%
TATTTGTGATTGTGTCCTGT+TGG + chr7_2:80220063-80220082 Msa1080640:intron 35.0%
AAAACTGGTAAAACTCCAAC+AGG - chr7_2:80220081-80220100 None:intergenic 35.0%
GTTGGAAAGACAAACTTCTA+TGG - chr7_2:80220127-80220146 None:intergenic 35.0%
CTCATGTGTTAACTGTTAAC+AGG + chr7_2:80220333-80220352 Msa1080640:intron 35.0%
!! ACTTACTAAATTTTCTGGCG+TGG + chr7_2:80220359-80220378 Msa1080640:intron 35.0%
ATGATCCACATCCACAAATA+TGG - chr7_2:80221506-80221525 None:intergenic 35.0%
! TGGATCATGTTGATTACCAT+GGG + chr7_2:80221518-80221537 Msa1080640:CDS 35.0%
GCTAGAAAACTTGAGATAAC+AGG - chr7_2:80221765-80221784 None:intergenic 35.0%
GTTAAGAAAACACAGTTCAG+AGG - chr7_2:80221811-80221830 None:intergenic 35.0%
CAAAGAAGGAGAAAGGATGT+TGG - chr7_2:80217033-80217052 None:intergenic 40.0%
AAAGGAGGAGAAAGGATGTT+GGG - chr7_2:80217081-80217100 None:intergenic 40.0%
TTGGACGCGGATATTGTATT+GGG - chr7_2:80217280-80217299 None:intergenic 40.0%
ATTGGACGCGGATATTGTAT+TGG - chr7_2:80217281-80217300 None:intergenic 40.0%
TTGACAAGAAAACTGGCTAC+TGG - chr7_2:80218814-80218833 None:intergenic 40.0%
! CTGTCGATTGACAAGAAAAC+TGG - chr7_2:80218807-80218826 None:intergenic 40.0%
GATCACCTTGGTTAAAGAAC+AGG + chr7_2:80217552-80217571 Msa1080640:CDS 40.0%
ATAAGAATATCACGGGGTGA+AGG + chr7_2:80217586-80217605 Msa1080640:intron 40.0%
TGCTTCTTTCACTCTTCCAA+TGG + chr7_2:80217609-80217628 Msa1080640:intron 40.0%
GTTCCTGTTATTGCAGATCT+TGG + chr7_2:80217735-80217754 Msa1080640:intron 40.0%
TACTTAGGATGATGTTGCTG+TGG + chr7_2:80218141-80218160 Msa1080640:intron 40.0%
GCTTCTAAATGTAGCCTCAT+TGG + chr7_2:80218598-80218617 Msa1080640:intron 40.0%
TGTTCTTTAACCAGGGTGAT+CGG + chr7_2:80218722-80218741 Msa1080640:intron 40.0%
! CTGTCGATTGACAAGAAAAC+TGG + chr7_2:80218807-80218826 Msa1080640:CDS 40.0%
TTGACAAGAAAACTGGCTAC+TGG + chr7_2:80218814-80218833 Msa1080640:CDS 40.0%
! AGAGCAGTGTTGAAGAGAAA+GGG - chr7_2:80218936-80218955 None:intergenic 40.0%
! AAGAGCAGTGTTGAAGAGAA+AGG - chr7_2:80218937-80218956 None:intergenic 40.0%
GTGAATGTTGATGCCCAATT+AGG + chr7_2:80219551-80219570 Msa1080640:intron 40.0%
GTGAATGTTGATGCCCAATT+AGG + chr7_2:80219551-80219570 Msa1080640:intron 40.0%
!!! TTTTGATTTGGGGCTTGATG+TGG + chr7_2:80219807-80219826 Msa1080640:CDS 40.0%
GGTTGCTTAAAGTCTGGTTA+TGG - chr7_2:80219903-80219922 None:intergenic 40.0%
CATAGAGGTTGCTTAAAGTC+TGG - chr7_2:80219909-80219928 None:intergenic 40.0%
CAGACTTTAAGCAACCTCTA+TGG + chr7_2:80219907-80219926 Msa1080640:CDS 40.0%
AGGCTAGATGCACGTTAAAT+TGG - chr7_2:80220530-80220549 None:intergenic 40.0%
AACGTGGAAATGTAGAAGCT+GGG - chr7_2:80220565-80220584 None:intergenic 40.0%
TTTCCACGTTGAACTTGTCT+AGG + chr7_2:80220575-80220594 Msa1080640:intron 40.0%
ATTCCTAGACAAGTTCAACG+TGG - chr7_2:80220581-80220600 None:intergenic 40.0%
ACGTTGAACTTGTCTAGGAA+TGG + chr7_2:80220580-80220599 Msa1080640:intron 40.0%
! AGCAAAATGTTTTTCCGAGC+AGG + chr7_2:80220612-80220631 Msa1080640:intron 40.0%
ATTATGTATCTGCACCTGCT+CGG - chr7_2:80220629-80220648 None:intergenic 40.0%
TGGCATGTACTTGTAAAGGA+AGG - chr7_2:80221147-80221166 None:intergenic 40.0%
CTTCTGGCATGTACTTGTAA+AGG - chr7_2:80221151-80221170 None:intergenic 40.0%
ATACCCTGATGCCATATTTG+TGG + chr7_2:80221492-80221511 Msa1080640:CDS 40.0%
CATCCACAAATATGGCATCA+GGG - chr7_2:80221498-80221517 None:intergenic 40.0%
ACATCCACAAATATGGCATC+AGG - chr7_2:80221499-80221518 None:intergenic 40.0%
TGATGCCATATTTGTGGATG+TGG + chr7_2:80221498-80221517 Msa1080640:CDS 40.0%
! GTGGATCATGTTGATTACCA+TGG + chr7_2:80221517-80221536 Msa1080640:CDS 40.0%
ACCATGGGAGATATGTTCAT+TGG + chr7_2:80221533-80221552 Msa1080640:CDS 40.0%
TCCAATGAACATATCTCCCA+TGG - chr7_2:80221537-80221556 None:intergenic 40.0%
CAAGGACTCAAACATCCAAA+AGG - chr7_2:80221647-80221666 None:intergenic 40.0%
TGGATGTTTGAGTCCTTGTA+TGG + chr7_2:80221649-80221668 Msa1080640:three_prime_UTR 40.0%
CAAAGGAGGAGAAAGGATGT+TGG - chr7_2:80217082-80217101 None:intergenic 45.0%
GGAATCGGATCTTTGTGGAT+TGG - chr7_2:80217299-80217318 None:intergenic 45.0%
AAGATCCGATTCCGCTCTAT+AGG + chr7_2:80217306-80217325 Msa1080640:five_prime_UTR 45.0%
AAATTCCCGCTCCTATAGAG+CGG - chr7_2:80217320-80217339 None:intergenic 45.0%
TACTGGTAGAAAGCTCATGC+TGG - chr7_2:80217444-80217463 None:intergenic 45.0%
ATCGGACTGTTGAGGCTTAT+AGG - chr7_2:80217535-80217554 None:intergenic 45.0%
GATCACCCTGGTTAAAGAAC+AGG - chr7_2:80218723-80218742 None:intergenic 45.0%
GTTCTTTAACCAGGGTGATC+GGG + chr7_2:80218723-80218742 Msa1080640:intron 45.0%
GGTTACAAGAAAGCTCATGC+TGG + chr7_2:80218835-80218854 Msa1080640:CDS 45.0%
TCAACACTGCTCTTCAACAC+TGG + chr7_2:80218943-80218962 Msa1080640:intron 45.0%
AGAGGAGTGAATGTCCTAGT+TGG + chr7_2:80219239-80219258 Msa1080640:intron 45.0%
TTTGGCAGGGTTTAAGAGGA+AGG + chr7_2:80219359-80219378 Msa1080640:intron 45.0%
TTGGCAGGGTTTAAGAGGAA+GGG + chr7_2:80219360-80219379 Msa1080640:intron 45.0%
CAAAAACCTTCCTGCAAGCA+TGG + chr7_2:80219401-80219420 Msa1080640:CDS 45.0%
TGAATACCTCATGCGCATTG+AGG - chr7_2:80219443-80219462 None:intergenic 45.0%
CCCAAAGCAAGTGCCTAATT+GGG - chr7_2:80219567-80219586 None:intergenic 45.0%
CCCAATTAGGCACTTGCTTT+GGG + chr7_2:80219564-80219583 Msa1080640:intron 45.0%
TCCCAAAGCAAGTGCCTAAT+TGG - chr7_2:80219568-80219587 None:intergenic 45.0%
CCCAAAGCAAGTGCCTAATT+GGG - chr7_2:80219567-80219586 None:intergenic 45.0%
CCCAATTAGGCACTTGCTTT+GGG + chr7_2:80219564-80219583 Msa1080640:intron 45.0%
TCCCAAAGCAAGTGCCTAAT+TGG - chr7_2:80219568-80219587 None:intergenic 45.0%
GCGTAATATGCTCTCCATAG+AGG - chr7_2:80219924-80219943 None:intergenic 45.0%
GTGATGCAGATGCAGAAAAC+TGG - chr7_2:80220096-80220115 None:intergenic 45.0%
GCACCTTACTACGTCTTATG+CGG + chr7_2:80220200-80220219 Msa1080640:intron 45.0%
CACCTTACTACGTCTTATGC+GGG + chr7_2:80220201-80220220 Msa1080640:intron 45.0%
ACCTTACTACGTCTTATGCG+GGG + chr7_2:80220202-80220221 Msa1080640:intron 45.0%
AAGCTGGGGAAAGTAGCATT+AGG - chr7_2:80220550-80220569 None:intergenic 45.0%
ACGTGGAAATGTAGAAGCTG+GGG - chr7_2:80220564-80220583 None:intergenic 45.0%
CAACGTGGAAATGTAGAAGC+TGG - chr7_2:80220566-80220585 None:intergenic 45.0%
ATAATGGTCAGAGTGCGCAA+CGG + chr7_2:80220828-80220847 Msa1080640:intron 45.0%
!! AATCACCAAGAGTACTGCTG+TGG + chr7_2:80221340-80221359 Msa1080640:CDS 45.0%
! TGCTGTGGTTCGGAAAGTTA+TGG + chr7_2:80221355-80221374 Msa1080640:CDS 45.0%
! GCTGTGGTTCGGAAAGTTAT+GGG + chr7_2:80221356-80221375 Msa1080640:CDS 45.0%
TGAATGATCCAAACCAGCCT+TGG + chr7_2:80221565-80221584 Msa1080640:exon 45.0%
GAATGATCCAAACCAGCCTT+GGG + chr7_2:80221566-80221585 Msa1080640:exon 45.0%
TCCCATCTTCGTCTCAAAAG+TGG + chr7_2:80221840-80221859 Msa1080640:three_prime_UTR 45.0%
!!! GCCACTTTTGAGACGAAGAT+GGG - chr7_2:80221844-80221863 None:intergenic 45.0%
!!! TGCCACTTTTGAGACGAAGA+TGG - chr7_2:80221845-80221864 None:intergenic 45.0%
!!! TAACATATATTATTTTTTTT+TGG + chr7_2:80219341-80219360 Msa1080640:intron 5.0%
!! AAATTATAATAAATGAAAAT+AGG + chr7_2:80220761-80220780 Msa1080640:intron 5.0%
!! GGATCTTTGTGGATTGGACG+CGG - chr7_2:80217293-80217312 None:intergenic 50.0%
AGAGCGGAATCGGATCTTTG+TGG - chr7_2:80217304-80217323 None:intergenic 50.0%
GTAAGCAACGAGTGTGTCGA+AGG - chr7_2:80217369-80217388 None:intergenic 50.0%
!! ATAGGCAGAAAGAGCGCTCA+AGG - chr7_2:80218758-80218777 None:intergenic 50.0%
TTTACCCCCCACTACAGTCT+TGG - chr7_2:80218230-80218249 None:intergenic 50.0%
!! ATAGGCAGAAAGAGCGCTCA+AGG + chr7_2:80218758-80218777 Msa1080640:CDS 50.0%
TGTGTTTGAGTGATGAGGGG+TGG + chr7_2:80218997-80219016 Msa1080640:intron 50.0%
TTTGAGTGATGAGGGGTGGA+GGG + chr7_2:80219001-80219020 Msa1080640:intron 50.0%
TGGCAGGGTTTAAGAGGAAG+GGG + chr7_2:80219361-80219380 Msa1080640:intron 50.0%
TCAACTGTAGCCATGCTTGC+AGG - chr7_2:80219414-80219433 None:intergenic 50.0%
CAGCCCCCTGAACTTAATTC+AGG - chr7_2:80219521-80219540 None:intergenic 50.0%
GCCCAATTAGGCACTTGCTT+TGG + chr7_2:80219563-80219582 Msa1080640:intron 50.0%
!! GCACTTGCTTTGGGAGATCA+GGG + chr7_2:80219573-80219592 Msa1080640:CDS 50.0%
TCATCTGTAGCCATGCTTGC+AGG - chr7_2:80219609-80219628 None:intergenic 50.0%
TGAATACCTCCTGCGCATTG+AGG - chr7_2:80219638-80219657 None:intergenic 50.0%
GCCCAATTAGGCACTTGCTT+TGG + chr7_2:80219563-80219582 Msa1080640:intron 50.0%
!! GCACTTGCTTTGGGAGATCA+GGG + chr7_2:80219573-80219592 Msa1080640:CDS 50.0%
! TTTGGGGCTTGATGTGGAGT+TGG + chr7_2:80219813-80219832 Msa1080640:CDS 50.0%
! GAGAGCATATTACGCGCACT+CGG + chr7_2:80219929-80219948 Msa1080640:CDS 50.0%
ACCCCGCATAAGACGTAGTA+AGG - chr7_2:80220206-80220225 None:intergenic 50.0%
GTTGCGCACTCTGACCATTA+TGG - chr7_2:80220829-80220848 None:intergenic 50.0%
TAATGGTCAGAGTGCGCAAC+GGG + chr7_2:80220829-80220848 Msa1080640:intron 50.0%
CAAGTACATGCCAGAAGTCC+TGG + chr7_2:80221154-80221173 Msa1080640:intron 50.0%
!! CCAAGAGTACTGCTGTGGTT+CGG + chr7_2:80221345-80221364 Msa1080640:CDS 50.0%
ACATTGTTCAAGGCTGCCCA+AGG - chr7_2:80221585-80221604 None:intergenic 50.0%
AGCTCTTATCTAATCCGCCC+TGG + chr7_2:80221782-80221801 Msa1080640:three_prime_UTR 50.0%
CCGCTCCTATAGAGCGGAAT+CGG - chr7_2:80217314-80217333 None:intergenic 55.0%
CCGATTCCGCTCTATAGGAG+CGG + chr7_2:80217311-80217330 Msa1080640:five_prime_UTR 55.0%
CGATTCCGCTCTATAGGAGC+GGG + chr7_2:80217312-80217331 Msa1080640:five_prime_UTR 55.0%
CCAAGGTGATCGGACTGTTG+AGG - chr7_2:80217543-80217562 None:intergenic 55.0%
CCTCAACAGTCCGATCACCT+TGG + chr7_2:80217540-80217559 Msa1080640:intron 55.0%
GCTACTGCCAAGACTGCACT+GGG + chr7_2:80218199-80218218 Msa1080640:CDS 55.0%
CTACTGCCAAGACTGCACTG+GGG + chr7_2:80218200-80218219 Msa1080640:CDS 55.0%
TACTGCCAAGACTGCACTGG+GGG + chr7_2:80218201-80218220 Msa1080640:CDS 55.0%
ATCGGGCTGTCGAGGCTTAT+AGG + chr7_2:80218740-80218759 Msa1080640:CDS 55.0%
GTTTGAGTGATGAGGGGTGG+AGG + chr7_2:80219000-80219019 Msa1080640:intron 55.0%
TTGAGTGATGAGGGGTGGAG+GGG + chr7_2:80219002-80219021 Msa1080640:intron 55.0%
CTGTAGCCATGCTTGCAGGA+AGG - chr7_2:80219410-80219429 None:intergenic 55.0%
!! GGCACTTGCTTTGGGAGATC+AGG + chr7_2:80219572-80219591 Msa1080640:intron 55.0%
!! TTTGGGAGATCAGGGTGCTG+AGG + chr7_2:80219581-80219600 Msa1080640:CDS 55.0%
!! GGCACTTGCTTTGGGAGATC+AGG + chr7_2:80219572-80219591 Msa1080640:intron 55.0%
!! TTTGGGAGATCAGGGTGCTG+AGG + chr7_2:80219581-80219600 Msa1080640:CDS 55.0%
!! TTGGGAGATCAGGGTGCTGA+GGG + chr7_2:80219582-80219601 Msa1080640:CDS 55.0%
CCGAACCACAGCAGTACTCT+TGG - chr7_2:80221348-80221367 None:intergenic 55.0%
GGCTACTGCCAAGACTGCAC+TGG + chr7_2:80218198-80218217 Msa1080640:CDS 60.0%
GGGGCTGCCAAGACTGTAGT+GGG + chr7_2:80218220-80218239 Msa1080640:CDS 60.0%
GGGCTGCCAAGACTGTAGTG+GGG + chr7_2:80218221-80218240 Msa1080640:CDS 60.0%
GGCTGCCAAGACTGTAGTGG+GGG + chr7_2:80218222-80218241 Msa1080640:CDS 60.0%
! GCTGCCAAGACTGTAGTGGG+GGG + chr7_2:80218223-80218242 Msa1080640:CDS 60.0%
TGCGCACCTCAATGCGCATG+AGG + chr7_2:80219434-80219453 Msa1080640:CDS 60.0%
TGCTGAGGAGCCTGCAAGCA+TGG + chr7_2:80219596-80219615 Msa1080640:CDS 60.0%
TGATGCGCACCTCAATGCGC+AGG + chr7_2:80219431-80219450 Msa1080640:CDS 60.0%
! AAGGCTGCCCAAGGCTGGTT+TGG - chr7_2:80221576-80221595 None:intergenic 60.0%
TGTTCAAGGCTGCCCAAGGC+TGG - chr7_2:80221581-80221600 None:intergenic 60.0%
!! ACACAGTTCAGAGGGCGCCA+GGG - chr7_2:80221802-80221821 None:intergenic 60.0%
!! AACACAGTTCAGAGGGCGCC+AGG - chr7_2:80221803-80221822 None:intergenic 60.0%
GGGGGCTGCCAAGACTGTAG+TGG + chr7_2:80218219-80218238 Msa1080640:CDS 65.0%
TGCGCACCTCAATGCGCAGG+AGG + chr7_2:80219629-80219648 Msa1080640:CDS 65.0%
GGCAGCCCCCAGTGCAGTCT+TGG - chr7_2:80218209-80218228 None:intergenic 70.0%
CCTCGACAGCCCGATCACCC+TGG - chr7_2:80218735-80218754 None:intergenic 70.0%
CCAGGGTGATCGGGCTGTCG+AGG + chr7_2:80218732-80218751 Msa1080640:intron 70.0%
!! CAGTTCAGAGGGCGCCAGGG+CGG - chr7_2:80221799-80221818 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 80217022 80221903 80217022 ID=Msa1080640;Name=Msa1080640
chr7_2 mRNA 80217022 80221903 80217022 ID=Msa1080640-mRNA-1;Parent=Msa1080640;Name=Msa1080640-mRNA-1;_AED=0.30;_eAED=0.30;_QI=379|0.77|0.9|1|0.77|0.8|10|336|296
chr7_2 exon 80217022 80217498 80217022 ID=Msa1080640-mRNA-1:exon:20287;Parent=Msa1080640-mRNA-1
chr7_2 exon 80217549 80217573 80217549 ID=Msa1080640-mRNA-1:exon:20288;Parent=Msa1080640-mRNA-1
chr7_2 exon 80218148 80218244 80218148 ID=Msa1080640-mRNA-1:exon:20289;Parent=Msa1080640-mRNA-1
chr7_2 exon 80218612 80218619 80218612 ID=Msa1080640-mRNA-1:exon:20290;Parent=Msa1080640-mRNA-1
chr7_2 exon 80218736 80218886 80218736 ID=Msa1080640-mRNA-1:exon:20291;Parent=Msa1080640-mRNA-1
chr7_2 exon 80219367 80219455 80219367 ID=Msa1080640-mRNA-1:exon:20292;Parent=Msa1080640-mRNA-1
chr7_2 exon 80219573 80219650 80219573 ID=Msa1080640-mRNA-1:exon:20293;Parent=Msa1080640-mRNA-1
chr7_2 exon 80219769 80219958 80219769 ID=Msa1080640-mRNA-1:exon:20294;Parent=Msa1080640-mRNA-1
chr7_2 exon 80221327 80221405 80221327 ID=Msa1080640-mRNA-1:exon:20295;Parent=Msa1080640-mRNA-1
chr7_2 exon 80221492 80221903 80221492 ID=Msa1080640-mRNA-1:exon:20296;Parent=Msa1080640-mRNA-1
chr7_2 five_prime_UTR 80217022 80217400 80217022 ID=Msa1080640-mRNA-1:five_prime_utr;Parent=Msa1080640-mRNA-1
chr7_2 CDS 80217401 80217498 80217401 ID=Msa1080640-mRNA-1:cds;Parent=Msa1080640-mRNA-1
chr7_2 CDS 80217549 80217573 80217549 ID=Msa1080640-mRNA-1:cds;Parent=Msa1080640-mRNA-1
chr7_2 CDS 80218148 80218244 80218148 ID=Msa1080640-mRNA-1:cds;Parent=Msa1080640-mRNA-1
chr7_2 CDS 80218612 80218619 80218612 ID=Msa1080640-mRNA-1:cds;Parent=Msa1080640-mRNA-1
chr7_2 CDS 80218736 80218886 80218736 ID=Msa1080640-mRNA-1:cds;Parent=Msa1080640-mRNA-1
chr7_2 CDS 80219367 80219455 80219367 ID=Msa1080640-mRNA-1:cds;Parent=Msa1080640-mRNA-1
chr7_2 CDS 80219573 80219650 80219573 ID=Msa1080640-mRNA-1:cds;Parent=Msa1080640-mRNA-1
chr7_2 CDS 80219769 80219958 80219769 ID=Msa1080640-mRNA-1:cds;Parent=Msa1080640-mRNA-1
chr7_2 CDS 80221327 80221405 80221327 ID=Msa1080640-mRNA-1:cds;Parent=Msa1080640-mRNA-1
chr7_2 CDS 80221492 80221567 80221492 ID=Msa1080640-mRNA-1:cds;Parent=Msa1080640-mRNA-1
chr7_2 three_prime_UTR 80221568 80221903 80221568 ID=Msa1080640-mRNA-1:three_prime_utr;Parent=Msa1080640-mRNA-1
Gene Sequence

>Msa1080640

ATGAAACTTACTCCTAATCTTGTAAGGGAGAAAAGCACGACCAGCATGAGCTTTCTACCAGTAGCCAGTTTTCTTGTCAATCGACAGTTCTTTCTAGCTCCGATCACCTTGGTTAAAGAACAGGATGATGTTGCTGTGGCTCGAGAGAGAGTTGAAAAAGCTGAGAGTGATTTGGCTACTGCCAAGACTGCACTGGGGGCTGCCAAGACTGTAGTGGGGGCCTCATTGGGTGATCGGGCTGTCGAGGCTTATAGGCAGAAAGAGCGCTCAAGGAAAATCGTATCTAAGGCTAGAAAGAACTGTCGATTGACAAGAAAACTGGCTACTGGTTACAAGAAAGCTCATGCTGGTCGTGCTTTTCTCCCTTACAAGATTAGGAGGTTTAAGAGGAAGGGGAAGAAGCTTTTGAATAACAAAAACCTTCCTGCAAGCATGGCTACAGTTGATGCGCACCTCAATGCGCATGAGGCACTTGCTTTGGGAGATCAGGGTGCTGAGGAGCCTGCAAGCATGGCTACAGATGATGCGCACCTCAATGCGCAGGAGGCACTTGCTTTGGGAGATCAGGGTGCTGAGGGATTTGATTTTGATTTGGGGCTTGATGTGGAGTTGGAGCAGCCATTTGCAGATTTTAATGACCTGACCTTACTACACGATAATTTGCAAGAATTGAGGAACCATAACCAGACTTTAAGCAACCTCTATGGAGAGCATATTACGCGCACTCGGCGAAAAAAATTGAAGAAGAAAATCACCAAGAGTACTGCTGTGGTTCGGAAAGTTATGGGTGAACTTGATTATGATTTCGATGAAATATACCCTGATGCCATATTTGTGGATGTGGATCATGTTGATTACCATGGGAGATATGTTCATTGGATCAAGTTTTGA

Protein sequence

>Msa1080640

MKLTPNLVREKSTTSMSFLPVASFLVNRQFFLAPITLVKEQDDVAVARERVEKAESDLATAKTALGAAKTVVGASLGDRAVEAYRQKERSRKIVSKARKNCRLTRKLATGYKKAHAGRAFLPYKIRRFKRKGKKLLNNKNLPASMATVDAHLNAHEALALGDQGAEEPASMATDDAHLNAQEALALGDQGAEGFDFDLGLDVELEQPFADFNDLTLLHDNLQELRNHNQTLSNLYGEHITRTRRKKLKKKITKSTAVVRKVMGELDYDFDEIYPDAIFVDVDHVDYHGRYVHWIKF*