AlfalfaGEDB | Msa1080640

M. sativa cultivar zhongmu-4 / Msa1080640

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003400	Msa1080640	0.806706	7.221995e-50	-8.615850e-47
Msa0003720	Msa1080640	0.831285	1.820729e-55	-8.615850e-47
Msa0003890	Msa1080640	0.843380	1.452285e-58	-8.615850e-47
Msa0005840	Msa1080640	0.827351	1.641306e-54	-8.615850e-47
Msa0006110	Msa1080640	0.834951	2.227254e-56	-8.615850e-47
Msa0007440	Msa1080640	0.840057	1.093736e-57	-8.615850e-47
Msa0010490	Msa1080640	0.826739	2.299065e-54	-8.615850e-47
Msa0010500	Msa1080640	0.810628	1.048874e-50	-8.615850e-47
Msa0011930	Msa1080640	0.802293	6.010091e-49	-8.615850e-47
Msa0012080	Msa1080640	0.810859	9.349090e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Find 120 sgRNAs with CRISPR-Local

Find 291 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAGGAGAAAGGATGTT+GGG	0.453170	7_2:-80217029	None:intergenic
AAAGGAGGAGAAAGGATGTT+GGG	0.446270	7_2:-80217078	None:intergenic
AAATTCCCGCTCCTATAGAG+CGG	0.661761	7_2:-80217317	None:intergenic
AACACAGTTCAGAGGGCGCC+AGG	0.390682	7_2:-80221800	None:intergenic
AACTTACTCCTAATCTTGTA+AGG	0.449123	7_2:+80217405	Msa1080640:CDS
AACTTACTCCTAATCTTGTA+AGG	0.449123	7_2:-80218871	None:intergenic
AAGATCCGATTCCGCTCTAT+AGG	0.405390	7_2:+80217306	Msa1080640:five_prime_UTR
AAGGCTGCCCAAGGCTGGTT+TGG	0.323136	7_2:-80221573	None:intergenic
AATCACCAAGAGTACTGCTG+TGG	0.685662	7_2:+80221340	Msa1080640:CDS
AATTATCGTGTAGTAAGGTC+AGG	0.520177	7_2:-80219861	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTCTTTCAAAGAAGGAGAA+AGG	-	chr7_2:80217040-80217059	None:intergenic	30.0%
GCTTTCAACACAATATTGTT+TGG	+	chr7_2:80217253-80217272	Msa1080640:five_prime_UTR	30.0%
AGTAAGTTTCATGTTGTCTA+TGG	-	chr7_2:80217393-80217412	None:intergenic	30.0%
AACTTACTCCTAATCTTGTA+AGG	+	chr7_2:80217405-80217424	Msa1080640:CDS	30.0%
ACTTACTCCTAATCTTGTAA+GGG	+	chr7_2:80217406-80217425	Msa1080640:CDS	30.0%
AAAACCTAAAACACTACCAT+TGG	-	chr7_2:80217628-80217647	None:intergenic	30.0%
TCTGTTAATCTATCTATTGC+AGG	+	chr7_2:80217952-80217971	Msa1080640:intron	30.0%
ACCTGAGAACAAAATTTAAG+TGG	+	chr7_2:80218466-80218485	Msa1080640:intron	30.0%
AATACCGCATATGTATATTC+TGG	+	chr7_2:80218507-80218526	Msa1080640:intron	30.0%
ATGAAGCTTAGGTCAAAATT+TGG	-	chr7_2:80218556-80218575	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	80217022	80221903	80217022	ID=Msa1080640;Name=Msa1080640
chr7_2	mRNA	80217022	80221903	80217022	ID=Msa1080640-mRNA-1;Parent=Msa1080640;Name=Msa1080640-mRNA-1;_AED=0.30;_eAED=0.30;_QI=379\|0.77\|0.9\|1\|0.77\|0.8\|10\|336\|296
chr7_2	exon	80217022	80217498	80217022	ID=Msa1080640-mRNA-1:exon:20287;Parent=Msa1080640-mRNA-1
chr7_2	exon	80217549	80217573	80217549	ID=Msa1080640-mRNA-1:exon:20288;Parent=Msa1080640-mRNA-1
chr7_2	exon	80218148	80218244	80218148	ID=Msa1080640-mRNA-1:exon:20289;Parent=Msa1080640-mRNA-1
chr7_2	exon	80218612	80218619	80218612	ID=Msa1080640-mRNA-1:exon:20290;Parent=Msa1080640-mRNA-1
chr7_2	exon	80218736	80218886	80218736	ID=Msa1080640-mRNA-1:exon:20291;Parent=Msa1080640-mRNA-1
chr7_2	exon	80219367	80219455	80219367	ID=Msa1080640-mRNA-1:exon:20292;Parent=Msa1080640-mRNA-1
chr7_2	exon	80219573	80219650	80219573	ID=Msa1080640-mRNA-1:exon:20293;Parent=Msa1080640-mRNA-1
chr7_2	exon	80219769	80219958	80219769	ID=Msa1080640-mRNA-1:exon:20294;Parent=Msa1080640-mRNA-1
chr7_2	exon	80221327	80221405	80221327	ID=Msa1080640-mRNA-1:exon:20295;Parent=Msa1080640-mRNA-1
chr7_2	exon	80221492	80221903	80221492	ID=Msa1080640-mRNA-1:exon:20296;Parent=Msa1080640-mRNA-1
chr7_2	five_prime_UTR	80217022	80217400	80217022	ID=Msa1080640-mRNA-1:five_prime_utr;Parent=Msa1080640-mRNA-1
chr7_2	CDS	80217401	80217498	80217401	ID=Msa1080640-mRNA-1:cds;Parent=Msa1080640-mRNA-1
chr7_2	CDS	80217549	80217573	80217549	ID=Msa1080640-mRNA-1:cds;Parent=Msa1080640-mRNA-1
chr7_2	CDS	80218148	80218244	80218148	ID=Msa1080640-mRNA-1:cds;Parent=Msa1080640-mRNA-1
chr7_2	CDS	80218612	80218619	80218612	ID=Msa1080640-mRNA-1:cds;Parent=Msa1080640-mRNA-1
chr7_2	CDS	80218736	80218886	80218736	ID=Msa1080640-mRNA-1:cds;Parent=Msa1080640-mRNA-1
chr7_2	CDS	80219367	80219455	80219367	ID=Msa1080640-mRNA-1:cds;Parent=Msa1080640-mRNA-1
chr7_2	CDS	80219573	80219650	80219573	ID=Msa1080640-mRNA-1:cds;Parent=Msa1080640-mRNA-1
chr7_2	CDS	80219769	80219958	80219769	ID=Msa1080640-mRNA-1:cds;Parent=Msa1080640-mRNA-1
chr7_2	CDS	80221327	80221405	80221327	ID=Msa1080640-mRNA-1:cds;Parent=Msa1080640-mRNA-1
chr7_2	CDS	80221492	80221567	80221492	ID=Msa1080640-mRNA-1:cds;Parent=Msa1080640-mRNA-1
chr7_2	three_prime_UTR	80221568	80221903	80221568	ID=Msa1080640-mRNA-1:three_prime_utr;Parent=Msa1080640-mRNA-1

Gene Sequence

>Msa1080640

ATGAAACTTACTCCTAATCTTGTAAGGGAGAAAAGCACGACCAGCATGAGCTTTCTACCAGTAGCCAGTTTTCTTGTCAATCGACAGTTCTTTCTAGCTCCGATCACCTTGGTTAAAGAACAGGATGATGTTGCTGTGGCTCGAGAGAGAGTTGAAAAAGCTGAGAGTGATTTGGCTACTGCCAAGACTGCACTGGGGGCTGCCAAGACTGTAGTGGGGGCCTCATTGGGTGATCGGGCTGTCGAGGCTTATAGGCAGAAAGAGCGCTCAAGGAAAATCGTATCTAAGGCTAGAAAGAACTGTCGATTGACAAGAAAACTGGCTACTGGTTACAAGAAAGCTCATGCTGGTCGTGCTTTTCTCCCTTACAAGATTAGGAGGTTTAAGAGGAAGGGGAAGAAGCTTTTGAATAACAAAAACCTTCCTGCAAGCATGGCTACAGTTGATGCGCACCTCAATGCGCATGAGGCACTTGCTTTGGGAGATCAGGGTGCTGAGGAGCCTGCAAGCATGGCTACAGATGATGCGCACCTCAATGCGCAGGAGGCACTTGCTTTGGGAGATCAGGGTGCTGAGGGATTTGATTTTGATTTGGGGCTTGATGTGGAGTTGGAGCAGCCATTTGCAGATTTTAATGACCTGACCTTACTACACGATAATTTGCAAGAATTGAGGAACCATAACCAGACTTTAAGCAACCTCTATGGAGAGCATATTACGCGCACTCGGCGAAAAAAATTGAAGAAGAAAATCACCAAGAGTACTGCTGTGGTTCGGAAAGTTATGGGTGAACTTGATTATGATTTCGATGAAATATACCCTGATGCCATATTTGTGGATGTGGATCATGTTGATTACCATGGGAGATATGTTCATTGGATCAAGTTTTGA

Protein sequence

>Msa1080640

MKLTPNLVREKSTTSMSFLPVASFLVNRQFFLAPITLVKEQDDVAVARERVEKAESDLATAKTALGAAKTVVGASLGDRAVEAYRQKERSRKIVSKARKNCRLTRKLATGYKKAHAGRAFLPYKIRRFKRKGKKLLNNKNLPASMATVDAHLNAHEALALGDQGAEEPASMATDDAHLNAQEALALGDQGAEGFDFDLGLDVELEQPFADFNDLTLLHDNLQELRNHNQTLSNLYGEHITRTRRKKLKKKITKSTAVVRKVMGELDYDFDEIYPDAIFVDVDHVDYHGRYVHWIKF*