AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0821190


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0821190 MtrunA17_Chr5g0441411 97.500 120 2 1 1 119 1 120 4.04e-81 233
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0821190 AT5G12240.2 46.667 120 56 4 1 118 1 114 3.55e-25 92.0

Find 46 sgRNAs with CRISPR-Local

Find 486 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAAACTAACAGATTCATTT+TGG 0.150883 5_3:+59192085 Msa0821190:intron
TTTAGATGTTGCTCGAAAAT+TGG 0.248254 5_3:+59193418 Msa0821190:CDS
GCTTGTAACTCTGCAATCTT+AGG 0.301055 5_3:-59193450 None:intergenic
AAAGTCAGAGGCTGCTAAAA+AGG 0.332380 5_3:+59192116 Msa0821190:CDS
TTCATCCATGGCTATGGTTA+TGG 0.367364 5_3:-59189801 None:intergenic
AGATCCAGGTGTTAATTGTC+TGG 0.439476 5_3:-59191761 None:intergenic
TCCAATACAATCCCTAGTCT+TGG 0.443977 5_3:-59193576 None:intergenic
GATTTGTCTCAATAATTACA+TGG 0.452406 5_3:-59193710 None:intergenic
TTAACACCTGGATCTGGATC+TGG 0.464092 5_3:+59191769 Msa0821190:CDS
AACGAACAGAAGGGAAGAGT+TGG 0.472674 5_3:-59189844 None:intergenic
AGACAATTAACACCTGGATC+TGG 0.479178 5_3:+59191763 Msa0821190:CDS
CATGGCTATGGTTATGGCTA+TGG 0.488300 5_3:-59189795 None:intergenic
TCCAAGACTAGGGATTGTAT+TGG 0.504722 5_3:+59193575 Msa0821190:three_prime_UTR
GCAGATCCAGATCCAGATCC+AGG 0.505288 5_3:-59191775 None:intergenic
TTCAGCTTCATCCATGGCTA+TGG 0.505306 5_3:-59189807 None:intergenic
TGCATGGAATGAAAAGGATA+AGG 0.508203 5_3:+59191902 Msa0821190:CDS
TTTGCGAACGTGAATCTTGA+CGG 0.510535 5_3:-59189758 None:intergenic
TATCACTGCAGCTAAATGAA+TGG 0.519982 5_3:+59191874 Msa0821190:intron
TTGAGTAGTAAAGTTGGTGT+GGG 0.522255 5_3:+59193550 Msa0821190:three_prime_UTR
TATAATGTATAATGCAAATG+TGG 0.522293 5_3:+59193603 Msa0821190:three_prime_UTR
TTGAAATTCAGCTTCATCCA+TGG 0.527393 5_3:-59189813 None:intergenic
ATCTGGATCTGCACAGGAAG+AGG 0.529978 5_3:+59191786 Msa0821190:CDS
TTGCGAACGTGAATCTTGAC+GGG 0.530131 5_3:-59189757 None:intergenic
ATCTGGATCTGGATCTGCAC+AGG 0.538020 5_3:+59191780 Msa0821190:CDS
TGGTGTGGTTTATTCTGCAA+AGG 0.540097 5_3:+59189706 Msa0821190:five_prime_UTR
TTTGAGTAGTAAAGTTGGTG+TGG 0.541565 5_3:+59193549 Msa0821190:three_prime_UTR
GTGGTTTATTCTGCAAAGGT+TGG 0.553043 5_3:+59189710 Msa0821190:five_prime_UTR
GCATGATGCATGGAATGAAA+AGG 0.553411 5_3:+59191896 Msa0821190:CDS
TGGTGTGGGAATCCAAGACT+AGG 0.561188 5_3:+59193564 Msa0821190:three_prime_UTR
GTCAAGATTCACGTTCGCAA+AGG 0.565582 5_3:+59189760 Msa0821190:five_prime_UTR
TAATCGCGAGAACGAACAGA+AGG 0.580979 5_3:-59189854 None:intergenic
CAGAAGGGAAGAGTTGGAGA+AGG 0.581359 5_3:-59189838 None:intergenic
GTGTATTTGCAGCGGTGGTG+TGG 0.582985 5_3:+59189691 Msa0821190:five_prime_UTR
CATAGCCATAACCATAGCCA+TGG 0.601899 5_3:+59189796 Msa0821190:exon
ATTTGTCTCAATAATTACAT+GGG 0.617097 5_3:-59193709 None:intergenic
TTGGAACAAGCTAAAGTCAG+AGG 0.617833 5_3:+59192104 Msa0821190:CDS
ACAGGTTGGTACAGAAGAAG+CGG 0.620709 5_3:+59192987 Msa0821190:intron
GGTGTGGGAATCCAAGACTA+GGG 0.626844 5_3:+59193565 Msa0821190:three_prime_UTR
TAAATGAATGGCATGATGCA+TGG 0.637004 5_3:+59191886 Msa0821190:CDS
AATCGCGAGAACGAACAGAA+GGG 0.637609 5_3:-59189853 None:intergenic
ATAATGTATAATGCAAATGT+GGG 0.638049 5_3:+59193604 Msa0821190:three_prime_UTR
TCATCCAGACAATTAACACC+TGG 0.646730 5_3:+59191757 Msa0821190:CDS
GACATTGCAACTAACTGTTG+AGG 0.652421 5_3:-59193666 None:intergenic
TCTGTGTGTATTTGCAGCGG+TGG 0.665559 5_3:+59189686 Msa0821190:five_prime_UTR
AATCAAGGAATCAACAAACA+TGG 0.667146 5_3:+59191933 Msa0821190:CDS
GTGTCTGTGTGTATTTGCAG+CGG 0.687144 5_3:+59189683 Msa0821190:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTAATAATTAAGAACA+AGG - chr5_3:59192199-59192218 None:intergenic 10.0%
!! TTGTTCTTAATTATTAAAAA+TGG + chr5_3:59192198-59192217 Msa0821190:intron 10.0%
!!! TTTTATTCATTTATATTTTC+TGG - chr5_3:59193291-59193310 None:intergenic 10.0%
!! ATATAAATGAATAAAATTGA+TGG + chr5_3:59193295-59193314 Msa0821190:intron 10.0%
!!! TAAAACAATAAAAGAATTTT+TGG - chr5_3:59193372-59193391 None:intergenic 10.0%
!!! TTTTATTGTTTTATTTCTTT+AGG + chr5_3:59193379-59193398 Msa0821190:intron 10.0%
!!! ATTTTTAATAATTAAGAACA+AGG - chr5_3:59192199-59192218 None:intergenic 10.0%
!! TTGTTCTTAATTATTAAAAA+TGG + chr5_3:59192198-59192217 Msa0821190:intron 10.0%
!!! TTTTATTCATTTATATTTTC+TGG - chr5_3:59193291-59193310 None:intergenic 10.0%
!! ATATAAATGAATAAAATTGA+TGG + chr5_3:59193295-59193314 Msa0821190:intron 10.0%
!!! TAAAACAATAAAAGAATTTT+TGG - chr5_3:59193372-59193391 None:intergenic 10.0%
!!! TTTTATTGTTTTATTTCTTT+AGG + chr5_3:59193379-59193398 Msa0821190:intron 10.0%
!!! AAAAACAAAGTTTTAGAAAT+GGG - chr5_3:59190059-59190078 None:intergenic 15.0%
!!! TAAAAACAAAGTTTTAGAAA+TGG - chr5_3:59190060-59190079 None:intergenic 15.0%
!!! TTTTCTCATACTATTAATAT+TGG + chr5_3:59191093-59191112 Msa0821190:intron 15.0%
!!! TTAAAGCAAAATTCAAATTT+TGG + chr5_3:59191637-59191656 Msa0821190:intron 15.0%
!!! GTTTAAATGATTATCATTTT+GGG + chr5_3:59193055-59193074 Msa0821190:intron 15.0%
!!! AAATGAACATTTTGTTTTTT+AGG + chr5_3:59193162-59193181 Msa0821190:intron 15.0%
!!! AATGAACATTTTGTTTTTTA+GGG + chr5_3:59193163-59193182 Msa0821190:intron 15.0%
!!! AAAAACAAAGTTTTAGAAAT+GGG - chr5_3:59190059-59190078 None:intergenic 15.0%
!!! TAAAAACAAAGTTTTAGAAA+TGG - chr5_3:59190060-59190079 None:intergenic 15.0%
!!! TTTTCTCATACTATTAATAT+TGG + chr5_3:59191093-59191112 Msa0821190:intron 15.0%
!!! TTAAAGCAAAATTCAAATTT+TGG + chr5_3:59191637-59191656 Msa0821190:intron 15.0%
!!! GTTTAAATGATTATCATTTT+GGG + chr5_3:59193055-59193074 Msa0821190:intron 15.0%
!!! AAATGAACATTTTGTTTTTT+AGG + chr5_3:59193162-59193181 Msa0821190:intron 15.0%
!!! AATGAACATTTTGTTTTTTA+GGG + chr5_3:59193163-59193182 Msa0821190:intron 15.0%
!!! AGTTGAAGGAATTTATTTTA+TGG + chr5_3:59190410-59190429 Msa0821190:intron 20.0%
!! AGTACTTATAGTATAATAGA+TGG + chr5_3:59190550-59190569 Msa0821190:intron 20.0%
!!! TAATGATTTGGATAGAAATA+TGG + chr5_3:59190704-59190723 Msa0821190:intron 20.0%
!! CAATGATGATATAACTTTAT+GGG + chr5_3:59191196-59191215 Msa0821190:intron 20.0%
!! AATGATGATATAACTTTATG+GGG + chr5_3:59191197-59191216 Msa0821190:intron 20.0%
!! TTATAATTATTTGTTCGTTG+TGG + chr5_3:59191235-59191254 Msa0821190:intron 20.0%
!! TATAATTATTTGTTCGTTGT+GGG + chr5_3:59191236-59191255 Msa0821190:intron 20.0%
!!! AGATTCAAAAACTTTTACTT+TGG - chr5_3:59191271-59191290 None:intergenic 20.0%
!! ACTTAACATGATTCTATATA+TGG + chr5_3:59191675-59191694 Msa0821190:intron 20.0%
!! CTTAACATGATTCTATATAT+GGG + chr5_3:59191676-59191695 Msa0821190:intron 20.0%
!! AAATTTAACAGTTGTCAATT+AGG - chr5_3:59191716-59191735 None:intergenic 20.0%
!! ATAATTAAGAACAAGGATAA+TGG - chr5_3:59192192-59192211 None:intergenic 20.0%
!! TGTAAAGAAAAAGTAAACAA+GGG - chr5_3:59192260-59192279 None:intergenic 20.0%
!! ATGTAAAGAAAAAGTAAACA+AGG - chr5_3:59192261-59192280 None:intergenic 20.0%
!! AAATCAAAGTAATTCAAACT+GGG - chr5_3:59192439-59192458 None:intergenic 20.0%
!! AAAATCAAAGTAATTCAAAC+TGG - chr5_3:59192440-59192459 None:intergenic 20.0%
!! TTGAAAGTTTCATTTAATGA+TGG + chr5_3:59192641-59192660 Msa0821190:intron 20.0%
!!! TTGATGATTTTGTAAAGATA+GGG + chr5_3:59192673-59192692 Msa0821190:intron 20.0%
!!! CGTTTAAATGATTATCATTT+TGG + chr5_3:59193054-59193073 Msa0821190:intron 20.0%
!!! TTCTTTCATAGAAAGTATTA+TGG + chr5_3:59193080-59193099 Msa0821190:intron 20.0%
!! ATTTATAGAAAGTAGTTTCT+TGG + chr5_3:59193117-59193136 Msa0821190:intron 20.0%
!!! ATGAACATTTTGTTTTTTAG+GGG + chr5_3:59193164-59193183 Msa0821190:intron 20.0%
!!! TTATATTTTCTGGAATTTCA+TGG - chr5_3:59193281-59193300 None:intergenic 20.0%
!! TATAATGTATAATGCAAATG+TGG + chr5_3:59193603-59193622 Msa0821190:three_prime_UTR 20.0%
!! ATAATGTATAATGCAAATGT+GGG + chr5_3:59193604-59193623 Msa0821190:three_prime_UTR 20.0%
!! ATTTGTCTCAATAATTACAT+GGG - chr5_3:59193712-59193731 None:intergenic 20.0%
!!! AGTTGAAGGAATTTATTTTA+TGG + chr5_3:59190410-59190429 Msa0821190:intron 20.0%
!! AGTACTTATAGTATAATAGA+TGG + chr5_3:59190550-59190569 Msa0821190:intron 20.0%
!!! TAATGATTTGGATAGAAATA+TGG + chr5_3:59190704-59190723 Msa0821190:intron 20.0%
!! CAATGATGATATAACTTTAT+GGG + chr5_3:59191196-59191215 Msa0821190:intron 20.0%
!! AATGATGATATAACTTTATG+GGG + chr5_3:59191197-59191216 Msa0821190:intron 20.0%
!! TTATAATTATTTGTTCGTTG+TGG + chr5_3:59191235-59191254 Msa0821190:intron 20.0%
!! TATAATTATTTGTTCGTTGT+GGG + chr5_3:59191236-59191255 Msa0821190:intron 20.0%
!!! AGATTCAAAAACTTTTACTT+TGG - chr5_3:59191271-59191290 None:intergenic 20.0%
!! ACTTAACATGATTCTATATA+TGG + chr5_3:59191675-59191694 Msa0821190:intron 20.0%
!! CTTAACATGATTCTATATAT+GGG + chr5_3:59191676-59191695 Msa0821190:intron 20.0%
!! AAATTTAACAGTTGTCAATT+AGG - chr5_3:59191716-59191735 None:intergenic 20.0%
!! ATAATTAAGAACAAGGATAA+TGG - chr5_3:59192192-59192211 None:intergenic 20.0%
!! TGTAAAGAAAAAGTAAACAA+GGG - chr5_3:59192260-59192279 None:intergenic 20.0%
!! ATGTAAAGAAAAAGTAAACA+AGG - chr5_3:59192261-59192280 None:intergenic 20.0%
!! AAATCAAAGTAATTCAAACT+GGG - chr5_3:59192439-59192458 None:intergenic 20.0%
!! AAAATCAAAGTAATTCAAAC+TGG - chr5_3:59192440-59192459 None:intergenic 20.0%
!! TTGAAAGTTTCATTTAATGA+TGG + chr5_3:59192641-59192660 Msa0821190:intron 20.0%
!!! TTGATGATTTTGTAAAGATA+GGG + chr5_3:59192673-59192692 Msa0821190:intron 20.0%
!!! CGTTTAAATGATTATCATTT+TGG + chr5_3:59193054-59193073 Msa0821190:intron 20.0%
!!! TTCTTTCATAGAAAGTATTA+TGG + chr5_3:59193080-59193099 Msa0821190:intron 20.0%
!! ATTTATAGAAAGTAGTTTCT+TGG + chr5_3:59193117-59193136 Msa0821190:intron 20.0%
!!! ATGAACATTTTGTTTTTTAG+GGG + chr5_3:59193164-59193183 Msa0821190:intron 20.0%
!!! TTATATTTTCTGGAATTTCA+TGG - chr5_3:59193281-59193300 None:intergenic 20.0%
!! TATAATGTATAATGCAAATG+TGG + chr5_3:59193603-59193622 Msa0821190:three_prime_UTR 20.0%
!! ATAATGTATAATGCAAATGT+GGG + chr5_3:59193604-59193623 Msa0821190:three_prime_UTR 20.0%
!! ATTTGTCTCAATAATTACAT+GGG - chr5_3:59193712-59193731 None:intergenic 20.0%
! AATCGAAACTTTAAACAACA+GGG - chr5_3:59189983-59190002 None:intergenic 25.0%
! AAATCGAAACTTTAAACAAC+AGG - chr5_3:59189984-59190003 None:intergenic 25.0%
!!! AGACGAGTTTTATATGAATT+AGG + chr5_3:59190114-59190133 Msa0821190:intron 25.0%
!!! AGGTTTATTTGATGATGATA+AGG + chr5_3:59190134-59190153 Msa0821190:intron 25.0%
!! TTTTATGAGATAGTGCTTAT+TGG + chr5_3:59190216-59190235 Msa0821190:intron 25.0%
! TTTATGAGATAGTGCTTATT+GGG + chr5_3:59190217-59190236 Msa0821190:intron 25.0%
! AAAGAAAAGTTATGAACAGA+AGG - chr5_3:59190287-59190306 None:intergenic 25.0%
! TAAATTCCTTCAACTTAAGT+GGG - chr5_3:59190405-59190424 None:intergenic 25.0%
! ATAAATTCCTTCAACTTAAG+TGG - chr5_3:59190406-59190425 None:intergenic 25.0%
! ACTTATAGTATAATAGATGG+TGG + chr5_3:59190553-59190572 Msa0821190:intron 25.0%
! AAACTAGACTTAAATGGTTT+CGG + chr5_3:59190576-59190595 Msa0821190:intron 25.0%
!! TAATCTCTTGTAGTTTTTCT+AGG - chr5_3:59190686-59190705 None:intergenic 25.0%
! ACTACAAGAGATTAATGATT+TGG + chr5_3:59190692-59190711 Msa0821190:intron 25.0%
! TGGTACTTAATAGAACATTA+TGG + chr5_3:59190724-59190743 Msa0821190:intron 25.0%
!! TAGTGTTATTAGTTTCAACT+AGG + chr5_3:59190809-59190828 Msa0821190:intron 25.0%
!! TGAAGTAGTATTATTGATTG+CGG + chr5_3:59190871-59190890 Msa0821190:intron 25.0%
! GCAATGATGATATAACTTTA+TGG + chr5_3:59191195-59191214 Msa0821190:intron 25.0%
! ATAATTATTTGTTCGTTGTG+GGG + chr5_3:59191237-59191256 Msa0821190:intron 25.0%
! GTTAAAAAACAGAAAGAAAG+AGG - chr5_3:59191379-59191398 None:intergenic 25.0%
! AAAACAAAGTGACAATTCTA+TGG - chr5_3:59191467-59191486 None:intergenic 25.0%
! TAGAAACTCAAAAGAAACAT+GGG - chr5_3:59191528-59191547 None:intergenic 25.0%
! ATTGACAACTGTTAAATTTC+AGG + chr5_3:59191717-59191736 Msa0821190:intron 25.0%
!! GATGTATTTGTTGAACAATA+AGG - chr5_3:59191971-59191990 None:intergenic 25.0%
!! ATTTTGTTACAACAATCAAC+TGG + chr5_3:59192022-59192041 Msa0821190:intron 25.0%
!! AAAATGAATCTGTTAGTTTG+GGG - chr5_3:59192086-59192105 None:intergenic 25.0%
!! CAAAATGAATCTGTTAGTTT+GGG - chr5_3:59192087-59192106 None:intergenic 25.0%
! AACATAGCACATGTTTATAT+TGG + chr5_3:59192221-59192240 Msa0821190:intron 25.0%
!!! GTTGATGATTTTGTAAAGAT+AGG + chr5_3:59192672-59192691 Msa0821190:intron 25.0%
!! TGATGATTTTGTAAAGATAG+GGG + chr5_3:59192674-59192693 Msa0821190:intron 25.0%
! ATTGGTTATAATGTTTCAAC+AGG + chr5_3:59192969-59192988 Msa0821190:intron 25.0%
!! AAAGAAGTCTTTCATTGATT+AGG + chr5_3:59193195-59193214 Msa0821190:intron 25.0%
! GATTTGTCTCAATAATTACA+TGG - chr5_3:59193713-59193732 None:intergenic 25.0%
! AATCGAAACTTTAAACAACA+GGG - chr5_3:59189983-59190002 None:intergenic 25.0%
! AAATCGAAACTTTAAACAAC+AGG - chr5_3:59189984-59190003 None:intergenic 25.0%
!!! AGACGAGTTTTATATGAATT+AGG + chr5_3:59190114-59190133 Msa0821190:intron 25.0%
!!! AGGTTTATTTGATGATGATA+AGG + chr5_3:59190134-59190153 Msa0821190:intron 25.0%
!! TTTTATGAGATAGTGCTTAT+TGG + chr5_3:59190216-59190235 Msa0821190:intron 25.0%
! TTTATGAGATAGTGCTTATT+GGG + chr5_3:59190217-59190236 Msa0821190:intron 25.0%
! AAAGAAAAGTTATGAACAGA+AGG - chr5_3:59190287-59190306 None:intergenic 25.0%
! TAAATTCCTTCAACTTAAGT+GGG - chr5_3:59190405-59190424 None:intergenic 25.0%
! ATAAATTCCTTCAACTTAAG+TGG - chr5_3:59190406-59190425 None:intergenic 25.0%
! ACTTATAGTATAATAGATGG+TGG + chr5_3:59190553-59190572 Msa0821190:intron 25.0%
! AAACTAGACTTAAATGGTTT+CGG + chr5_3:59190576-59190595 Msa0821190:intron 25.0%
!! TAATCTCTTGTAGTTTTTCT+AGG - chr5_3:59190686-59190705 None:intergenic 25.0%
! ACTACAAGAGATTAATGATT+TGG + chr5_3:59190692-59190711 Msa0821190:intron 25.0%
! TGGTACTTAATAGAACATTA+TGG + chr5_3:59190724-59190743 Msa0821190:intron 25.0%
!! TAGTGTTATTAGTTTCAACT+AGG + chr5_3:59190809-59190828 Msa0821190:intron 25.0%
!! TGAAGTAGTATTATTGATTG+CGG + chr5_3:59190871-59190890 Msa0821190:intron 25.0%
! GCAATGATGATATAACTTTA+TGG + chr5_3:59191195-59191214 Msa0821190:intron 25.0%
! ATAATTATTTGTTCGTTGTG+GGG + chr5_3:59191237-59191256 Msa0821190:intron 25.0%
! GTTAAAAAACAGAAAGAAAG+AGG - chr5_3:59191379-59191398 None:intergenic 25.0%
! AAAACAAAGTGACAATTCTA+TGG - chr5_3:59191467-59191486 None:intergenic 25.0%
! TAGAAACTCAAAAGAAACAT+GGG - chr5_3:59191528-59191547 None:intergenic 25.0%
! ATTGACAACTGTTAAATTTC+AGG + chr5_3:59191717-59191736 Msa0821190:intron 25.0%
!! GATGTATTTGTTGAACAATA+AGG - chr5_3:59191971-59191990 None:intergenic 25.0%
!! ATTTTGTTACAACAATCAAC+TGG + chr5_3:59192022-59192041 Msa0821190:intron 25.0%
!! AAAATGAATCTGTTAGTTTG+GGG - chr5_3:59192086-59192105 None:intergenic 25.0%
!! CAAAATGAATCTGTTAGTTT+GGG - chr5_3:59192087-59192106 None:intergenic 25.0%
! AACATAGCACATGTTTATAT+TGG + chr5_3:59192221-59192240 Msa0821190:intron 25.0%
!!! GTTGATGATTTTGTAAAGAT+AGG + chr5_3:59192672-59192691 Msa0821190:intron 25.0%
!! TGATGATTTTGTAAAGATAG+GGG + chr5_3:59192674-59192693 Msa0821190:intron 25.0%
! ATTGGTTATAATGTTTCAAC+AGG + chr5_3:59192969-59192988 Msa0821190:intron 25.0%
!! AAAGAAGTCTTTCATTGATT+AGG + chr5_3:59193195-59193214 Msa0821190:intron 25.0%
! GATTTGTCTCAATAATTACA+TGG - chr5_3:59193713-59193732 None:intergenic 25.0%
!!! CCATTCTGTTTTATTTTTGG+TGG - chr5_3:59189660-59189679 None:intergenic 30.0%
CCACCAAAAATAAAACAGAA+TGG + chr5_3:59189657-59189676 Msa0821190:five_prime_UTR 30.0%
!!! ACGCCATTCTGTTTTATTTT+TGG - chr5_3:59189663-59189682 None:intergenic 30.0%
! TCTAGGGTTTAGAAAGTTAT+AGG + chr5_3:59189909-59189928 Msa0821190:intron 30.0%
! ATACCATGTTGTGAATTTTG+TGG + chr5_3:59190009-59190028 Msa0821190:intron 30.0%
AAACCACAAAATTCACAACA+TGG - chr5_3:59190015-59190034 None:intergenic 30.0%
!! ATTTGATGATGATAAGGATG+TGG + chr5_3:59190140-59190159 Msa0821190:intron 30.0%
ACGTAGAAATAAAAGGAGTA+GGG + chr5_3:59190344-59190363 Msa0821190:intron 30.0%
TTATGGTATAGCTATAAGAC+TGG + chr5_3:59190427-59190446 Msa0821190:intron 30.0%
AGACAGGATAAGATTAGAAA+TGG + chr5_3:59190503-59190522 Msa0821190:intron 30.0%
! GACATGTGAATTTTGTAGTA+AGG + chr5_3:59190612-59190631 Msa0821190:intron 30.0%
GGACTTATAGAATTACAACA+TGG - chr5_3:59190905-59190924 None:intergenic 30.0%
CAGCATATAGAAATTTGTGA+AGG - chr5_3:59190966-59190985 None:intergenic 30.0%
! TGTTTTCAAAAAATCCGCTA+TGG + chr5_3:59190984-59191003 Msa0821190:intron 30.0%
! ATTGGTTTAGTCATTAGTGT+CGG + chr5_3:59191111-59191130 Msa0821190:intron 30.0%
CATTGCTTCATAGTTTATAG+AGG + chr5_3:59191161-59191180 Msa0821190:intron 30.0%
ATATAACTTTATGGGGAACT+TGG + chr5_3:59191204-59191223 Msa0821190:intron 30.0%
TAATTATTTGTTCGTTGTGG+GGG + chr5_3:59191238-59191257 Msa0821190:intron 30.0%
TACTGAGTTTGGATTATGTT+GGG + chr5_3:59191415-59191434 Msa0821190:intron 30.0%
GACAAATTGTAGCATTCATT+AGG - chr5_3:59191445-59191464 None:intergenic 30.0%
! TTTGCTTTGAGTTTCATTTG+AGG + chr5_3:59191484-59191503 Msa0821190:intron 30.0%
AGTTTCATTTGAGGAAAAGA+TGG + chr5_3:59191493-59191512 Msa0821190:intron 30.0%
GTTTCATTTGAGGAAAAGAT+GGG + chr5_3:59191494-59191513 Msa0821190:intron 30.0%
GTAGAAACTCAAAAGAAACA+TGG - chr5_3:59191529-59191548 None:intergenic 30.0%
!!! TAGTTTTAGACTATGTTGTG+AGG - chr5_3:59191616-59191635 None:intergenic 30.0%
!! GATAAGGATTTTGAGAATCA+AGG + chr5_3:59191918-59191937 Msa0821190:CDS 30.0%
AATCAAGGAATCAACAAACA+TGG + chr5_3:59191933-59191952 Msa0821190:CDS 30.0%
CCAAAATGAATCTGTTAGTT+TGG - chr5_3:59192088-59192107 None:intergenic 30.0%
! CCAAACTAACAGATTCATTT+TGG + chr5_3:59192085-59192104 Msa0821190:intron 30.0%
GTATGCATGTAAAAATAAGC+AGG - chr5_3:59192155-59192174 None:intergenic 30.0%
GCTTTAACCTTAAAAGTTTG+AGG + chr5_3:59192313-59192332 Msa0821190:intron 30.0%
! TAATCAGCCTCAAACTTTTA+AGG - chr5_3:59192323-59192342 None:intergenic 30.0%
AAAGTAATTCAAACTGGGTT+TGG - chr5_3:59192434-59192453 None:intergenic 30.0%
ATAAAAATTCTTGTCCCATC+TGG + chr5_3:59192528-59192547 Msa0821190:intron 30.0%
!!! ATTTTTTTCACATGCCAGAT+GGG - chr5_3:59192545-59192564 None:intergenic 30.0%
TCTCTTTATCATGTTTGTGA+AGG + chr5_3:59192771-59192790 Msa0821190:intron 30.0%
ATTTATGCGTGTGACAATTT+AGG - chr5_3:59192807-59192826 None:intergenic 30.0%
AAATTGTCACACGCATAAAT+AGG + chr5_3:59192807-59192826 Msa0821190:intron 30.0%
AATTGTCACACGCATAAATA+GGG + chr5_3:59192808-59192827 Msa0821190:intron 30.0%
GTTATAATGTTTCAACAGGT+TGG + chr5_3:59192973-59192992 Msa0821190:intron 30.0%
TTTAGATGTTGCTCGAAAAT+TGG + chr5_3:59193418-59193437 Msa0821190:CDS 30.0%
!! GACATTTTGAGTAGTAAAGT+TGG + chr5_3:59193544-59193563 Msa0821190:three_prime_UTR 30.0%
!!! CCATTCTGTTTTATTTTTGG+TGG - chr5_3:59189660-59189679 None:intergenic 30.0%
CCACCAAAAATAAAACAGAA+TGG + chr5_3:59189657-59189676 Msa0821190:five_prime_UTR 30.0%
!!! ACGCCATTCTGTTTTATTTT+TGG - chr5_3:59189663-59189682 None:intergenic 30.0%
! TCTAGGGTTTAGAAAGTTAT+AGG + chr5_3:59189909-59189928 Msa0821190:intron 30.0%
! ATACCATGTTGTGAATTTTG+TGG + chr5_3:59190009-59190028 Msa0821190:intron 30.0%
AAACCACAAAATTCACAACA+TGG - chr5_3:59190015-59190034 None:intergenic 30.0%
!! ATTTGATGATGATAAGGATG+TGG + chr5_3:59190140-59190159 Msa0821190:intron 30.0%
ACGTAGAAATAAAAGGAGTA+GGG + chr5_3:59190344-59190363 Msa0821190:intron 30.0%
TTATGGTATAGCTATAAGAC+TGG + chr5_3:59190427-59190446 Msa0821190:intron 30.0%
AGACAGGATAAGATTAGAAA+TGG + chr5_3:59190503-59190522 Msa0821190:intron 30.0%
! GACATGTGAATTTTGTAGTA+AGG + chr5_3:59190612-59190631 Msa0821190:intron 30.0%
GGACTTATAGAATTACAACA+TGG - chr5_3:59190905-59190924 None:intergenic 30.0%
CAGCATATAGAAATTTGTGA+AGG - chr5_3:59190966-59190985 None:intergenic 30.0%
! TGTTTTCAAAAAATCCGCTA+TGG + chr5_3:59190984-59191003 Msa0821190:intron 30.0%
! ATTGGTTTAGTCATTAGTGT+CGG + chr5_3:59191111-59191130 Msa0821190:intron 30.0%
CATTGCTTCATAGTTTATAG+AGG + chr5_3:59191161-59191180 Msa0821190:intron 30.0%
ATATAACTTTATGGGGAACT+TGG + chr5_3:59191204-59191223 Msa0821190:intron 30.0%
TAATTATTTGTTCGTTGTGG+GGG + chr5_3:59191238-59191257 Msa0821190:intron 30.0%
TACTGAGTTTGGATTATGTT+GGG + chr5_3:59191415-59191434 Msa0821190:intron 30.0%
GACAAATTGTAGCATTCATT+AGG - chr5_3:59191445-59191464 None:intergenic 30.0%
! TTTGCTTTGAGTTTCATTTG+AGG + chr5_3:59191484-59191503 Msa0821190:intron 30.0%
AGTTTCATTTGAGGAAAAGA+TGG + chr5_3:59191493-59191512 Msa0821190:intron 30.0%
GTTTCATTTGAGGAAAAGAT+GGG + chr5_3:59191494-59191513 Msa0821190:intron 30.0%
GTAGAAACTCAAAAGAAACA+TGG - chr5_3:59191529-59191548 None:intergenic 30.0%
!!! TAGTTTTAGACTATGTTGTG+AGG - chr5_3:59191616-59191635 None:intergenic 30.0%
!! GATAAGGATTTTGAGAATCA+AGG + chr5_3:59191918-59191937 Msa0821190:CDS 30.0%
AATCAAGGAATCAACAAACA+TGG + chr5_3:59191933-59191952 Msa0821190:CDS 30.0%
CCAAAATGAATCTGTTAGTT+TGG - chr5_3:59192088-59192107 None:intergenic 30.0%
! CCAAACTAACAGATTCATTT+TGG + chr5_3:59192085-59192104 Msa0821190:intron 30.0%
GTATGCATGTAAAAATAAGC+AGG - chr5_3:59192155-59192174 None:intergenic 30.0%
GCTTTAACCTTAAAAGTTTG+AGG + chr5_3:59192313-59192332 Msa0821190:intron 30.0%
! TAATCAGCCTCAAACTTTTA+AGG - chr5_3:59192323-59192342 None:intergenic 30.0%
AAAGTAATTCAAACTGGGTT+TGG - chr5_3:59192434-59192453 None:intergenic 30.0%
ATAAAAATTCTTGTCCCATC+TGG + chr5_3:59192528-59192547 Msa0821190:intron 30.0%
!!! ATTTTTTTCACATGCCAGAT+GGG - chr5_3:59192545-59192564 None:intergenic 30.0%
TCTCTTTATCATGTTTGTGA+AGG + chr5_3:59192771-59192790 Msa0821190:intron 30.0%
ATTTATGCGTGTGACAATTT+AGG - chr5_3:59192807-59192826 None:intergenic 30.0%
AAATTGTCACACGCATAAAT+AGG + chr5_3:59192807-59192826 Msa0821190:intron 30.0%
AATTGTCACACGCATAAATA+GGG + chr5_3:59192808-59192827 Msa0821190:intron 30.0%
GTTATAATGTTTCAACAGGT+TGG + chr5_3:59192973-59192992 Msa0821190:intron 30.0%
TTTAGATGTTGCTCGAAAAT+TGG + chr5_3:59193418-59193437 Msa0821190:CDS 30.0%
!! GACATTTTGAGTAGTAAAGT+TGG + chr5_3:59193544-59193563 Msa0821190:three_prime_UTR 30.0%
TTGAAATTCAGCTTCATCCA+TGG - chr5_3:59189816-59189835 None:intergenic 35.0%
!!! TGTGGTATCAGTTTTGAAGT+AGG + chr5_3:59190158-59190177 Msa0821190:intron 35.0%
!!! GTGGTATCAGTTTTGAAGTA+GGG + chr5_3:59190159-59190178 Msa0821190:intron 35.0%
!!! TGGTATCAGTTTTGAAGTAG+GGG + chr5_3:59190160-59190179 Msa0821190:intron 35.0%
!! TTATTTCTACGTCGTCTTGT+AGG - chr5_3:59190336-59190355 None:intergenic 35.0%
CAAGACGACGTAGAAATAAA+AGG + chr5_3:59190337-59190356 Msa0821190:intron 35.0%
GACGTAGAAATAAAAGGAGT+AGG + chr5_3:59190343-59190362 Msa0821190:intron 35.0%
!! AAAGTACCCACTTAAGTTGA+AGG + chr5_3:59190396-59190415 Msa0821190:intron 35.0%
CAACATTAGAAAGAGAGTCA+GGG + chr5_3:59190526-59190545 Msa0821190:intron 35.0%
TGGTGGAAACTAGACTTAAA+TGG + chr5_3:59190570-59190589 Msa0821190:intron 35.0%
! AGTAAGGAGAGTATATCAGA+TGG + chr5_3:59190628-59190647 Msa0821190:intron 35.0%
ATGGCGTTATTTGATTCATG+CGG + chr5_3:59190743-59190762 Msa0821190:intron 35.0%
! GTAGTATTATTGATTGCGGA+TGG + chr5_3:59190875-59190894 Msa0821190:intron 35.0%
! TTGTCAAGTATTGTCCATAG+CGG - chr5_3:59191001-59191020 None:intergenic 35.0%
CAAATGTGTTAGTGTCATGT+CGG - chr5_3:59191053-59191072 None:intergenic 35.0%
TATGACATGATGTTCTGTGT+GGG + chr5_3:59191292-59191311 Msa0821190:intron 35.0%
! GAAAGAAAGAGGATTTTCCA+GGG - chr5_3:59191368-59191387 None:intergenic 35.0%
! AGAAAGAAAGAGGATTTTCC+AGG - chr5_3:59191369-59191388 None:intergenic 35.0%
ATCCAAACTCAGTACAAAGA+AGG - chr5_3:59191409-59191428 None:intergenic 35.0%
GTACTGAGTTTGGATTATGT+TGG + chr5_3:59191414-59191433 Msa0821190:intron 35.0%
TATCACTGCAGCTAAATGAA+TGG + chr5_3:59191874-59191893 Msa0821190:intron 35.0%
TAAATGAATGGCATGATGCA+TGG + chr5_3:59191886-59191905 Msa0821190:CDS 35.0%
TGCATGGAATGAAAAGGATA+AGG + chr5_3:59191902-59191921 Msa0821190:CDS 35.0%
!!! CATTTTTTTCACATGCCAGA+TGG - chr5_3:59192546-59192565 None:intergenic 35.0%
AGGGATAAAAGATAAGTGAG+AGG + chr5_3:59192827-59192846 Msa0821190:intron 35.0%
GGGATAAAAGATAAGTGAGA+GGG + chr5_3:59192828-59192847 Msa0821190:intron 35.0%
GGATAAAAGATAAGTGAGAG+GGG + chr5_3:59192829-59192848 Msa0821190:intron 35.0%
!! TTTGAGTAGTAAAGTTGGTG+TGG + chr5_3:59193549-59193568 Msa0821190:three_prime_UTR 35.0%
!! TTGAGTAGTAAAGTTGGTGT+GGG + chr5_3:59193550-59193569 Msa0821190:three_prime_UTR 35.0%
TTGAAATTCAGCTTCATCCA+TGG - chr5_3:59189816-59189835 None:intergenic 35.0%
!!! TGTGGTATCAGTTTTGAAGT+AGG + chr5_3:59190158-59190177 Msa0821190:intron 35.0%
!!! GTGGTATCAGTTTTGAAGTA+GGG + chr5_3:59190159-59190178 Msa0821190:intron 35.0%
!!! TGGTATCAGTTTTGAAGTAG+GGG + chr5_3:59190160-59190179 Msa0821190:intron 35.0%
!! TTATTTCTACGTCGTCTTGT+AGG - chr5_3:59190336-59190355 None:intergenic 35.0%
CAAGACGACGTAGAAATAAA+AGG + chr5_3:59190337-59190356 Msa0821190:intron 35.0%
GACGTAGAAATAAAAGGAGT+AGG + chr5_3:59190343-59190362 Msa0821190:intron 35.0%
!! AAAGTACCCACTTAAGTTGA+AGG + chr5_3:59190396-59190415 Msa0821190:intron 35.0%
CAACATTAGAAAGAGAGTCA+GGG + chr5_3:59190526-59190545 Msa0821190:intron 35.0%
TGGTGGAAACTAGACTTAAA+TGG + chr5_3:59190570-59190589 Msa0821190:intron 35.0%
! AGTAAGGAGAGTATATCAGA+TGG + chr5_3:59190628-59190647 Msa0821190:intron 35.0%
ATGGCGTTATTTGATTCATG+CGG + chr5_3:59190743-59190762 Msa0821190:intron 35.0%
! GTAGTATTATTGATTGCGGA+TGG + chr5_3:59190875-59190894 Msa0821190:intron 35.0%
! TTGTCAAGTATTGTCCATAG+CGG - chr5_3:59191001-59191020 None:intergenic 35.0%
CAAATGTGTTAGTGTCATGT+CGG - chr5_3:59191053-59191072 None:intergenic 35.0%
TATGACATGATGTTCTGTGT+GGG + chr5_3:59191292-59191311 Msa0821190:intron 35.0%
! GAAAGAAAGAGGATTTTCCA+GGG - chr5_3:59191368-59191387 None:intergenic 35.0%
! AGAAAGAAAGAGGATTTTCC+AGG - chr5_3:59191369-59191388 None:intergenic 35.0%
ATCCAAACTCAGTACAAAGA+AGG - chr5_3:59191409-59191428 None:intergenic 35.0%
GTACTGAGTTTGGATTATGT+TGG + chr5_3:59191414-59191433 Msa0821190:intron 35.0%
TATCACTGCAGCTAAATGAA+TGG + chr5_3:59191874-59191893 Msa0821190:intron 35.0%
TAAATGAATGGCATGATGCA+TGG + chr5_3:59191886-59191905 Msa0821190:CDS 35.0%
TGCATGGAATGAAAAGGATA+AGG + chr5_3:59191902-59191921 Msa0821190:CDS 35.0%
!!! CATTTTTTTCACATGCCAGA+TGG - chr5_3:59192546-59192565 None:intergenic 35.0%
AGGGATAAAAGATAAGTGAG+AGG + chr5_3:59192827-59192846 Msa0821190:intron 35.0%
GGGATAAAAGATAAGTGAGA+GGG + chr5_3:59192828-59192847 Msa0821190:intron 35.0%
GGATAAAAGATAAGTGAGAG+GGG + chr5_3:59192829-59192848 Msa0821190:intron 35.0%
!! TTTGAGTAGTAAAGTTGGTG+TGG + chr5_3:59193549-59193568 Msa0821190:three_prime_UTR 35.0%
!! TTGAGTAGTAAAGTTGGTGT+GGG + chr5_3:59193550-59193569 Msa0821190:three_prime_UTR 35.0%
TGGTGTGGTTTATTCTGCAA+AGG + chr5_3:59189706-59189725 Msa0821190:five_prime_UTR 40.0%
GTGGTTTATTCTGCAAAGGT+TGG + chr5_3:59189710-59189729 Msa0821190:five_prime_UTR 40.0%
TTTGCGAACGTGAATCTTGA+CGG - chr5_3:59189761-59189780 None:intergenic 40.0%
TTCATCCATGGCTATGGTTA+TGG - chr5_3:59189804-59189823 None:intergenic 40.0%
TTCCCACTGTTTGTGTTTCT+AGG + chr5_3:59189892-59189911 Msa0821190:intron 40.0%
! TCCCACTGTTTGTGTTTCTA+GGG + chr5_3:59189893-59189912 Msa0821190:intron 40.0%
ACCCTAGAAACACAAACAGT+GGG - chr5_3:59189897-59189916 None:intergenic 40.0%
AACCCTAGAAACACAAACAG+TGG - chr5_3:59189898-59189917 None:intergenic 40.0%
AGAAGGATTCGAAACTGCAT+GGG - chr5_3:59190270-59190289 None:intergenic 40.0%
CGTATCAGATAAGACACATG+CGG - chr5_3:59190376-59190395 None:intergenic 40.0%
GCAACATTAGAAAGAGAGTC+AGG + chr5_3:59190525-59190544 Msa0821190:intron 40.0%
! AAGGAGAGTATATCAGATGG+AGG + chr5_3:59190631-59190650 Msa0821190:intron 40.0%
! AGGAGAGTATATCAGATGGA+GGG + chr5_3:59190632-59190651 Msa0821190:intron 40.0%
AGTCCAATCACTAGATCTAG+AGG + chr5_3:59190656-59190675 Msa0821190:intron 40.0%
CTTCCTCTAGATCTAGTGAT+TGG - chr5_3:59190662-59190681 None:intergenic 40.0%
! TTTTATGGCAGCTCAAATGG+CGG - chr5_3:59190926-59190945 None:intergenic 40.0%
ACAACACTAGATTGAAGTGC+CGG + chr5_3:59191017-59191036 Msa0821190:intron 40.0%
TGTTAGTGTCATGTCGGTAT+TGG - chr5_3:59191047-59191066 None:intergenic 40.0%
CGACATGACACTAACACATT+TGG + chr5_3:59191051-59191070 Msa0821190:intron 40.0%
GTATGACATGATGTTCTGTG+TGG + chr5_3:59191291-59191310 Msa0821190:intron 40.0%
ATGACATGATGTTCTGTGTG+GGG + chr5_3:59191293-59191312 Msa0821190:intron 40.0%
CTCCTTCTTTGTACTGAGTT+TGG + chr5_3:59191404-59191423 Msa0821190:intron 40.0%
TACCTTAAAAGCCTGCACAA+TGG + chr5_3:59191546-59191565 Msa0821190:intron 40.0%
CTATATATGGGATTACGCCT+TGG + chr5_3:59191688-59191707 Msa0821190:intron 40.0%
TCATCCAGACAATTAACACC+TGG + chr5_3:59191757-59191776 Msa0821190:CDS 40.0%
AGATCCAGGTGTTAATTGTC+TGG - chr5_3:59191764-59191783 None:intergenic 40.0%
AGACAATTAACACCTGGATC+TGG + chr5_3:59191763-59191782 Msa0821190:CDS 40.0%
GCATGATGCATGGAATGAAA+AGG + chr5_3:59191896-59191915 Msa0821190:CDS 40.0%
TTGGAACAAGCTAAAGTCAG+AGG + chr5_3:59192104-59192123 Msa0821190:CDS 40.0%
AAAGTCAGAGGCTGCTAAAA+AGG + chr5_3:59192116-59192135 Msa0821190:CDS 40.0%
TTCAAAGGAAAGGACTAAGG+AGG - chr5_3:59192587-59192606 None:intergenic 40.0%
GGTTTCAAAGGAAAGGACTA+AGG - chr5_3:59192590-59192609 None:intergenic 40.0%
! ATAGGGGAGATTGTTGTTGT+AGG + chr5_3:59192690-59192709 Msa0821190:intron 40.0%
! CTAGGGTGTTATAACTGTGA+TGG + chr5_3:59192867-59192886 Msa0821190:intron 40.0%
TAGAATGACACTACGCTCAT+TGG + chr5_3:59192951-59192970 Msa0821190:intron 40.0%
! AGAAGCGGAAAGATTTTGCA+AGG + chr5_3:59193002-59193021 Msa0821190:CDS 40.0%
GCTTGTAACTCTGCAATCTT+AGG - chr5_3:59193453-59193472 None:intergenic 40.0%
TCCAAGACTAGGGATTGTAT+TGG + chr5_3:59193575-59193594 Msa0821190:three_prime_UTR 40.0%
TCCAATACAATCCCTAGTCT+TGG - chr5_3:59193579-59193598 None:intergenic 40.0%
GACATTGCAACTAACTGTTG+AGG - chr5_3:59193669-59193688 None:intergenic 40.0%
AATCATTACATGTTTCCCCC+AGG + chr5_3:59193729-59193748 Msa0821190:three_prime_UTR 40.0%
TGGTGTGGTTTATTCTGCAA+AGG + chr5_3:59189706-59189725 Msa0821190:five_prime_UTR 40.0%
GTGGTTTATTCTGCAAAGGT+TGG + chr5_3:59189710-59189729 Msa0821190:five_prime_UTR 40.0%
TTTGCGAACGTGAATCTTGA+CGG - chr5_3:59189761-59189780 None:intergenic 40.0%
TTCATCCATGGCTATGGTTA+TGG - chr5_3:59189804-59189823 None:intergenic 40.0%
TTCCCACTGTTTGTGTTTCT+AGG + chr5_3:59189892-59189911 Msa0821190:intron 40.0%
! TCCCACTGTTTGTGTTTCTA+GGG + chr5_3:59189893-59189912 Msa0821190:intron 40.0%
ACCCTAGAAACACAAACAGT+GGG - chr5_3:59189897-59189916 None:intergenic 40.0%
AACCCTAGAAACACAAACAG+TGG - chr5_3:59189898-59189917 None:intergenic 40.0%
AGAAGGATTCGAAACTGCAT+GGG - chr5_3:59190270-59190289 None:intergenic 40.0%
CGTATCAGATAAGACACATG+CGG - chr5_3:59190376-59190395 None:intergenic 40.0%
GCAACATTAGAAAGAGAGTC+AGG + chr5_3:59190525-59190544 Msa0821190:intron 40.0%
! AAGGAGAGTATATCAGATGG+AGG + chr5_3:59190631-59190650 Msa0821190:intron 40.0%
! AGGAGAGTATATCAGATGGA+GGG + chr5_3:59190632-59190651 Msa0821190:intron 40.0%
AGTCCAATCACTAGATCTAG+AGG + chr5_3:59190656-59190675 Msa0821190:intron 40.0%
CTTCCTCTAGATCTAGTGAT+TGG - chr5_3:59190662-59190681 None:intergenic 40.0%
! TTTTATGGCAGCTCAAATGG+CGG - chr5_3:59190926-59190945 None:intergenic 40.0%
ACAACACTAGATTGAAGTGC+CGG + chr5_3:59191017-59191036 Msa0821190:intron 40.0%
TGTTAGTGTCATGTCGGTAT+TGG - chr5_3:59191047-59191066 None:intergenic 40.0%
CGACATGACACTAACACATT+TGG + chr5_3:59191051-59191070 Msa0821190:intron 40.0%
GTATGACATGATGTTCTGTG+TGG + chr5_3:59191291-59191310 Msa0821190:intron 40.0%
ATGACATGATGTTCTGTGTG+GGG + chr5_3:59191293-59191312 Msa0821190:intron 40.0%
CTCCTTCTTTGTACTGAGTT+TGG + chr5_3:59191404-59191423 Msa0821190:intron 40.0%
TACCTTAAAAGCCTGCACAA+TGG + chr5_3:59191546-59191565 Msa0821190:intron 40.0%
CTATATATGGGATTACGCCT+TGG + chr5_3:59191688-59191707 Msa0821190:intron 40.0%
TCATCCAGACAATTAACACC+TGG + chr5_3:59191757-59191776 Msa0821190:CDS 40.0%
AGATCCAGGTGTTAATTGTC+TGG - chr5_3:59191764-59191783 None:intergenic 40.0%
AGACAATTAACACCTGGATC+TGG + chr5_3:59191763-59191782 Msa0821190:CDS 40.0%
GCATGATGCATGGAATGAAA+AGG + chr5_3:59191896-59191915 Msa0821190:CDS 40.0%
TTGGAACAAGCTAAAGTCAG+AGG + chr5_3:59192104-59192123 Msa0821190:CDS 40.0%
AAAGTCAGAGGCTGCTAAAA+AGG + chr5_3:59192116-59192135 Msa0821190:CDS 40.0%
TTCAAAGGAAAGGACTAAGG+AGG - chr5_3:59192587-59192606 None:intergenic 40.0%
GGTTTCAAAGGAAAGGACTA+AGG - chr5_3:59192590-59192609 None:intergenic 40.0%
! ATAGGGGAGATTGTTGTTGT+AGG + chr5_3:59192690-59192709 Msa0821190:intron 40.0%
! CTAGGGTGTTATAACTGTGA+TGG + chr5_3:59192867-59192886 Msa0821190:intron 40.0%
TAGAATGACACTACGCTCAT+TGG + chr5_3:59192951-59192970 Msa0821190:intron 40.0%
! AGAAGCGGAAAGATTTTGCA+AGG + chr5_3:59193002-59193021 Msa0821190:CDS 40.0%
GCTTGTAACTCTGCAATCTT+AGG - chr5_3:59193453-59193472 None:intergenic 40.0%
TCCAAGACTAGGGATTGTAT+TGG + chr5_3:59193575-59193594 Msa0821190:three_prime_UTR 40.0%
TCCAATACAATCCCTAGTCT+TGG - chr5_3:59193579-59193598 None:intergenic 40.0%
GACATTGCAACTAACTGTTG+AGG - chr5_3:59193669-59193688 None:intergenic 40.0%
AATCATTACATGTTTCCCCC+AGG + chr5_3:59193729-59193748 Msa0821190:three_prime_UTR 40.0%
GTGTCTGTGTGTATTTGCAG+CGG + chr5_3:59189683-59189702 Msa0821190:five_prime_UTR 45.0%
TTGCGAACGTGAATCTTGAC+GGG - chr5_3:59189760-59189779 None:intergenic 45.0%
GTCAAGATTCACGTTCGCAA+AGG + chr5_3:59189760-59189779 Msa0821190:five_prime_UTR 45.0%
CATGGCTATGGTTATGGCTA+TGG - chr5_3:59189798-59189817 None:intergenic 45.0%
CATAGCCATAACCATAGCCA+TGG + chr5_3:59189796-59189815 Msa0821190:exon 45.0%
TTCAGCTTCATCCATGGCTA+TGG - chr5_3:59189810-59189829 None:intergenic 45.0%
AACGAACAGAAGGGAAGAGT+TGG - chr5_3:59189847-59189866 None:intergenic 45.0%
AATCGCGAGAACGAACAGAA+GGG - chr5_3:59189856-59189875 None:intergenic 45.0%
TAATCGCGAGAACGAACAGA+AGG - chr5_3:59189857-59189876 None:intergenic 45.0%
GGCATGACTAGAAATCACGT+GGG + chr5_3:59190238-59190257 Msa0821190:intron 45.0%
CAGAAGGATTCGAAACTGCA+TGG - chr5_3:59190271-59190290 None:intergenic 45.0%
TGTTGTACGAGACAGAGATG+AGG + chr5_3:59190453-59190472 Msa0821190:intron 45.0%
! AGGATGTTGTGTTTGTTGCG+TGG + chr5_3:59190473-59190492 Msa0821190:intron 45.0%
! GGAGAGTATATCAGATGGAG+GGG + chr5_3:59190633-59190652 Msa0821190:intron 45.0%
! AAGCCTTATCCCACTAAGTC+GGG - chr5_3:59190773-59190792 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+CGG - chr5_3:59190774-59190793 None:intergenic 45.0%
! GCGTTTTATGGCAGCTCAAA+TGG - chr5_3:59190929-59190948 None:intergenic 45.0%
! CAACACTAGATTGAAGTGCC+GGG + chr5_3:59191018-59191037 Msa0821190:intron 45.0%
TGACATGATGTTCTGTGTGG+GGG + chr5_3:59191294-59191313 Msa0821190:intron 45.0%
GTCAATGATTGACAGGTGCT+AGG + chr5_3:59191316-59191335 Msa0821190:intron 45.0%
ATGATTGACAGGTGCTAGGA+TGG + chr5_3:59191320-59191339 Msa0821190:intron 45.0%
! CACCATTGTGCAGGCTTTTA+AGG - chr5_3:59191551-59191570 None:intergenic 45.0%
GCAAATCTTCACCATTGTGC+AGG - chr5_3:59191560-59191579 None:intergenic 45.0%
CAGTTGTCAATTAGGTGCCA+AGG - chr5_3:59191708-59191727 None:intergenic 45.0%
TTAACACCTGGATCTGGATC+TGG + chr5_3:59191769-59191788 Msa0821190:CDS 45.0%
!! GGTCACTGGTTTCAAAGGAA+AGG - chr5_3:59192597-59192616 None:intergenic 45.0%
!! CTACTGGTCACTGGTTTCAA+AGG - chr5_3:59192602-59192621 None:intergenic 45.0%
AAACCAGTGACCAGTAGACT+TGG + chr5_3:59192605-59192624 Msa0821190:intron 45.0%
AAACCAAGTCTACTGGTCAC+TGG - chr5_3:59192611-59192630 None:intergenic 45.0%
TGCATGCAAACCAAGTCTAC+TGG - chr5_3:59192618-59192637 None:intergenic 45.0%
!! ACAGGTTGGTACAGAAGAAG+CGG + chr5_3:59192987-59193006 Msa0821190:intron 45.0%
GTGTCTGTGTGTATTTGCAG+CGG + chr5_3:59189683-59189702 Msa0821190:five_prime_UTR 45.0%
TTGCGAACGTGAATCTTGAC+GGG - chr5_3:59189760-59189779 None:intergenic 45.0%
GTCAAGATTCACGTTCGCAA+AGG + chr5_3:59189760-59189779 Msa0821190:five_prime_UTR 45.0%
CATGGCTATGGTTATGGCTA+TGG - chr5_3:59189798-59189817 None:intergenic 45.0%
CATAGCCATAACCATAGCCA+TGG + chr5_3:59189796-59189815 Msa0821190:exon 45.0%
TTCAGCTTCATCCATGGCTA+TGG - chr5_3:59189810-59189829 None:intergenic 45.0%
AACGAACAGAAGGGAAGAGT+TGG - chr5_3:59189847-59189866 None:intergenic 45.0%
AATCGCGAGAACGAACAGAA+GGG - chr5_3:59189856-59189875 None:intergenic 45.0%
TAATCGCGAGAACGAACAGA+AGG - chr5_3:59189857-59189876 None:intergenic 45.0%
GGCATGACTAGAAATCACGT+GGG + chr5_3:59190238-59190257 Msa0821190:intron 45.0%
CAGAAGGATTCGAAACTGCA+TGG - chr5_3:59190271-59190290 None:intergenic 45.0%
TGTTGTACGAGACAGAGATG+AGG + chr5_3:59190453-59190472 Msa0821190:intron 45.0%
! AGGATGTTGTGTTTGTTGCG+TGG + chr5_3:59190473-59190492 Msa0821190:intron 45.0%
! GGAGAGTATATCAGATGGAG+GGG + chr5_3:59190633-59190652 Msa0821190:intron 45.0%
! AAGCCTTATCCCACTAAGTC+GGG - chr5_3:59190773-59190792 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+CGG - chr5_3:59190774-59190793 None:intergenic 45.0%
! GCGTTTTATGGCAGCTCAAA+TGG - chr5_3:59190929-59190948 None:intergenic 45.0%
! CAACACTAGATTGAAGTGCC+GGG + chr5_3:59191018-59191037 Msa0821190:intron 45.0%
TGACATGATGTTCTGTGTGG+GGG + chr5_3:59191294-59191313 Msa0821190:intron 45.0%
GTCAATGATTGACAGGTGCT+AGG + chr5_3:59191316-59191335 Msa0821190:intron 45.0%
ATGATTGACAGGTGCTAGGA+TGG + chr5_3:59191320-59191339 Msa0821190:intron 45.0%
! CACCATTGTGCAGGCTTTTA+AGG - chr5_3:59191551-59191570 None:intergenic 45.0%
GCAAATCTTCACCATTGTGC+AGG - chr5_3:59191560-59191579 None:intergenic 45.0%
CAGTTGTCAATTAGGTGCCA+AGG - chr5_3:59191708-59191727 None:intergenic 45.0%
TTAACACCTGGATCTGGATC+TGG + chr5_3:59191769-59191788 Msa0821190:CDS 45.0%
!! GGTCACTGGTTTCAAAGGAA+AGG - chr5_3:59192597-59192616 None:intergenic 45.0%
!! CTACTGGTCACTGGTTTCAA+AGG - chr5_3:59192602-59192621 None:intergenic 45.0%
AAACCAGTGACCAGTAGACT+TGG + chr5_3:59192605-59192624 Msa0821190:intron 45.0%
AAACCAAGTCTACTGGTCAC+TGG - chr5_3:59192611-59192630 None:intergenic 45.0%
TGCATGCAAACCAAGTCTAC+TGG - chr5_3:59192618-59192637 None:intergenic 45.0%
!! ACAGGTTGGTACAGAAGAAG+CGG + chr5_3:59192987-59193006 Msa0821190:intron 45.0%
TCTGTGTGTATTTGCAGCGG+TGG + chr5_3:59189686-59189705 Msa0821190:five_prime_UTR 50.0%
CAGAAGGGAAGAGTTGGAGA+AGG - chr5_3:59189841-59189860 None:intergenic 50.0%
GGGCATGACTAGAAATCACG+TGG + chr5_3:59190237-59190256 Msa0821190:intron 50.0%
AGATAAGACACATGCGGCTG+AGG - chr5_3:59190370-59190389 None:intergenic 50.0%
GTTGCGTGGTAAGACTAGAC+AGG + chr5_3:59190487-59190506 Msa0821190:intron 50.0%
TGACCCGACTTAGTGGGATA+AGG + chr5_3:59190767-59190786 Msa0821190:intron 50.0%
CGACTTAGTGGGATAAGGCT+TGG + chr5_3:59190772-59190791 Msa0821190:intron 50.0%
TGAGCTGCCATAAAACGCCA+TGG + chr5_3:59190931-59190950 Msa0821190:intron 50.0%
! TCATGTCGGTATTGGACACC+CGG - chr5_3:59191039-59191058 None:intergenic 50.0%
TGTGGGGGTCAATGATTGAC+AGG + chr5_3:59191309-59191328 Msa0821190:intron 50.0%
! ATTCACTTGCTGCTAGACCC+TGG + chr5_3:59191348-59191367 Msa0821190:intron 50.0%
ATCTGGATCTGGATCTGCAC+AGG + chr5_3:59191780-59191799 Msa0821190:CDS 50.0%
ATCTGGATCTGCACAGGAAG+AGG + chr5_3:59191786-59191805 Msa0821190:CDS 50.0%
TGCACAGGAAGAGGTAGTTG+TGG + chr5_3:59191795-59191814 Msa0821190:intron 50.0%
AGGAAAGGACTAAGGAGGCA+AGG - chr5_3:59192582-59192601 None:intergenic 50.0%
! TGAGAGGGGTACATGTGTGT+TGG + chr5_3:59192843-59192862 Msa0821190:intron 50.0%
! GAGAGGGGTACATGTGTGTT+GGG + chr5_3:59192844-59192863 Msa0821190:intron 50.0%
GGTACATGTGTGTTGGGCTA+GGG + chr5_3:59192850-59192869 Msa0821190:intron 50.0%
! CTGTGATGGTGATGTTGCAG+AGG + chr5_3:59192881-59192900 Msa0821190:intron 50.0%
TGGTGTGGGAATCCAAGACT+AGG + chr5_3:59193564-59193583 Msa0821190:three_prime_UTR 50.0%
GGTGTGGGAATCCAAGACTA+GGG + chr5_3:59193565-59193584 Msa0821190:three_prime_UTR 50.0%
TTACATGTTTCCCCCAGGTG+TGG + chr5_3:59193734-59193753 Msa0821190:three_prime_UTR 50.0%
TCTGTGTGTATTTGCAGCGG+TGG + chr5_3:59189686-59189705 Msa0821190:five_prime_UTR 50.0%
CAGAAGGGAAGAGTTGGAGA+AGG - chr5_3:59189841-59189860 None:intergenic 50.0%
GGGCATGACTAGAAATCACG+TGG + chr5_3:59190237-59190256 Msa0821190:intron 50.0%
AGATAAGACACATGCGGCTG+AGG - chr5_3:59190370-59190389 None:intergenic 50.0%
GTTGCGTGGTAAGACTAGAC+AGG + chr5_3:59190487-59190506 Msa0821190:intron 50.0%
TGACCCGACTTAGTGGGATA+AGG + chr5_3:59190767-59190786 Msa0821190:intron 50.0%
CGACTTAGTGGGATAAGGCT+TGG + chr5_3:59190772-59190791 Msa0821190:intron 50.0%
TGAGCTGCCATAAAACGCCA+TGG + chr5_3:59190931-59190950 Msa0821190:intron 50.0%
! TCATGTCGGTATTGGACACC+CGG - chr5_3:59191039-59191058 None:intergenic 50.0%
TGTGGGGGTCAATGATTGAC+AGG + chr5_3:59191309-59191328 Msa0821190:intron 50.0%
! ATTCACTTGCTGCTAGACCC+TGG + chr5_3:59191348-59191367 Msa0821190:intron 50.0%
ATCTGGATCTGGATCTGCAC+AGG + chr5_3:59191780-59191799 Msa0821190:CDS 50.0%
ATCTGGATCTGCACAGGAAG+AGG + chr5_3:59191786-59191805 Msa0821190:CDS 50.0%
TGCACAGGAAGAGGTAGTTG+TGG + chr5_3:59191795-59191814 Msa0821190:intron 50.0%
AGGAAAGGACTAAGGAGGCA+AGG - chr5_3:59192582-59192601 None:intergenic 50.0%
! TGAGAGGGGTACATGTGTGT+TGG + chr5_3:59192843-59192862 Msa0821190:intron 50.0%
! GAGAGGGGTACATGTGTGTT+GGG + chr5_3:59192844-59192863 Msa0821190:intron 50.0%
GGTACATGTGTGTTGGGCTA+GGG + chr5_3:59192850-59192869 Msa0821190:intron 50.0%
! CTGTGATGGTGATGTTGCAG+AGG + chr5_3:59192881-59192900 Msa0821190:intron 50.0%
TGGTGTGGGAATCCAAGACT+AGG + chr5_3:59193564-59193583 Msa0821190:three_prime_UTR 50.0%
GGTGTGGGAATCCAAGACTA+GGG + chr5_3:59193565-59193584 Msa0821190:three_prime_UTR 50.0%
TTACATGTTTCCCCCAGGTG+TGG + chr5_3:59193734-59193753 Msa0821190:three_prime_UTR 50.0%
GTGTATTTGCAGCGGTGGTG+TGG + chr5_3:59189691-59189710 Msa0821190:five_prime_UTR 55.0%
! AGCAGCGCCATGGCGTTTTA+TGG - chr5_3:59190941-59190960 None:intergenic 55.0%
GCAGATCCAGATCCAGATCC+AGG - chr5_3:59191778-59191797 None:intergenic 55.0%
GGGTACATGTGTGTTGGGCT+AGG + chr5_3:59192849-59192868 Msa0821190:intron 55.0%
GTGTATTTGCAGCGGTGGTG+TGG + chr5_3:59189691-59189710 Msa0821190:five_prime_UTR 55.0%
! AGCAGCGCCATGGCGTTTTA+TGG - chr5_3:59190941-59190960 None:intergenic 55.0%
GCAGATCCAGATCCAGATCC+AGG - chr5_3:59191778-59191797 None:intergenic 55.0%
GGGTACATGTGTGTTGGGCT+AGG + chr5_3:59192849-59192868 Msa0821190:intron 55.0%
ATGCGGCTGACCCGACTTAG+TGG + chr5_3:59190760-59190779 Msa0821190:intron 60.0%
TGCGGCTGACCCGACTTAGT+GGG + chr5_3:59190761-59190780 Msa0821190:intron 60.0%
TGTGAAGGACAGCAGCGCCA+TGG - chr5_3:59190951-59190970 None:intergenic 60.0%
ATGCGGCTGACCCGACTTAG+TGG + chr5_3:59190760-59190779 Msa0821190:intron 60.0%
TGCGGCTGACCCGACTTAGT+GGG + chr5_3:59190761-59190780 Msa0821190:intron 60.0%
TGTGAAGGACAGCAGCGCCA+TGG - chr5_3:59190951-59190970 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 59189652 59193759 59189652 ID=Msa0821190;Name=Msa0821190
chr5_3 mRNA 59189652 59193759 59189652 ID=Msa0821190-mRNA-1;Parent=Msa0821190;Name=Msa0821190-mRNA-1;_AED=0.04;_eAED=0.04;_QI=163|1|1|1|0.8|0.83|6|305|119
chr5_3 exon 59189652 59189880 59189652 ID=Msa0821190-mRNA-1:exon:17949;Parent=Msa0821190-mRNA-1
chr5_3 exon 59191739 59191807 59191739 ID=Msa0821190-mRNA-1:exon:17950;Parent=Msa0821190-mRNA-1
chr5_3 exon 59191885 59191954 59191885 ID=Msa0821190-mRNA-1:exon:17951;Parent=Msa0821190-mRNA-1
chr5_3 exon 59192097 59192137 59192097 ID=Msa0821190-mRNA-1:exon:17952;Parent=Msa0821190-mRNA-1
chr5_3 exon 59192991 59193050 59192991 ID=Msa0821190-mRNA-1:exon:17953;Parent=Msa0821190-mRNA-1
chr5_3 exon 59193401 59193759 59193401 ID=Msa0821190-mRNA-1:exon:17954;Parent=Msa0821190-mRNA-1
chr5_3 five_prime_UTR 59189652 59189814 59189652 ID=Msa0821190-mRNA-1:five_prime_utr;Parent=Msa0821190-mRNA-1
chr5_3 CDS 59189815 59189880 59189815 ID=Msa0821190-mRNA-1:cds;Parent=Msa0821190-mRNA-1
chr5_3 CDS 59191739 59191807 59191739 ID=Msa0821190-mRNA-1:cds;Parent=Msa0821190-mRNA-1
chr5_3 CDS 59191885 59191954 59191885 ID=Msa0821190-mRNA-1:cds;Parent=Msa0821190-mRNA-1
chr5_3 CDS 59192097 59192137 59192097 ID=Msa0821190-mRNA-1:cds;Parent=Msa0821190-mRNA-1
chr5_3 CDS 59192991 59193050 59192991 ID=Msa0821190-mRNA-1:cds;Parent=Msa0821190-mRNA-1
chr5_3 CDS 59193401 59193454 59193401 ID=Msa0821190-mRNA-1:cds;Parent=Msa0821190-mRNA-1
chr5_3 three_prime_UTR 59193455 59193759 59193455 ID=Msa0821190-mRNA-1:three_prime_utr;Parent=Msa0821190-mRNA-1
Gene Sequence

>Msa0821190

ATGGATGAAGCTGAATTTCAACGCCTTCTCCAACTCTTCCCTTCTGTTCGTTCTCGCGATTACATCGAAGAATCATCATCATCATCATCCAGACAATTAACACCTGGATCTGGATCTGGATCTGCACAGGAAGAGCTAAATGAATGGCATGATGCATGGAATGAAAAGGATAAGGATTTTGAGAATCAAGGAATCAACAAACATGATTCATTTTGGAACAAGCTAAAGTCAGAGGCTGCTAAAAAGGTTGGTACAGAAGAAGCGGAAAGATTTTGCAAGGCGTTTCAACAAATTCATAAGAGACTAGTCAATGAAGAGTTAAGTTTAGATGTTGCTCGAAAATTGGTAAACTCATCCTAA

Protein sequence

>Msa0821190

MDEAEFQRLLQLFPSVRSRDYIEESSSSSSRQLTPGSGSGSAQEELNEWHDAWNEKDKDFENQGINKHDSFWNKLKSEAAKKVGTEEAERFCKAFQQIHKRLVNEELSLDVARKLVNSS*