AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1339930

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1339930 MtrunA17_Chr4g0060191 97.594 1039 13 3 1 1028 1 1038 0.0 2083
Msa1339930 MtrunA17_Chr6g0461151 48.318 1070 451 21 15 1028 3 1026 0.0 966
Msa1339930 MtrunA17_Chr5g0397601 46.286 1050 478 21 18 1028 5 1007 0.0 894
Msa1339930 MtrunA17_Chr8g0349231 43.696 1039 517 19 18 1028 5 1003 0.0 835
Msa1339930 MtrunA17_Chr7g0258331 52.964 776 319 14 280 1028 19 775 0.0 809
Msa1339930 MtrunA17_Chr1g0174761 52.842 774 325 12 278 1028 18 774 0.0 803
Msa1339930 MtrunA17_Chr3g0087501 51.415 813 328 18 265 1028 28 822 0.0 796
Msa1339930 MtrunA17_Chr4g0010751 50.948 791 336 16 271 1028 423 1194 0.0 778
Msa1339930 MtrunA17_Chr4g0010751 42.336 137 76 2 18 154 2 135 1.91e-22 104
Msa1339930 MtrunA17_Chr4g0033151 52.625 762 311 15 293 1028 33 770 0.0 770
Msa1339930 MtrunA17_Chr1g0174581 50.522 766 332 15 293 1028 49 797 0.0 753
Msa1339930 MtrunA17_Chr6g0460791 50.330 757 334 13 293 1028 274 1009 0.0 740
Msa1339930 MtrunA17_Chr4g0014711 49.673 765 334 17 293 1028 302 1044 0.0 729
Msa1339930 MtrunA17_Chr4g0014711 36.496 137 74 4 16 149 1 127 1.45e-15 82.0
Msa1339930 MtrunA17_Chr7g0247271 48.580 704 312 12 357 1028 281 966 0.0 672
Msa1339930 MtrunA17_Chr7g0247271 43.750 128 68 2 18 145 82 205 3.33e-23 106
Msa1339930 MtrunA17_Chr4g0028371 44.129 809 384 16 262 1028 1 783 0.0 618
Msa1339930 MtrunA17_Chr4g0035961 42.540 811 343 18 262 1028 1 732 0.0 586
Msa1339930 MtrunA17_Chr1g0151051 40.269 817 420 21 243 1022 7 792 1.59e-179 543
Msa1339930 MtrunA17_Chr5g0447321 37.185 753 439 13 294 1028 27 763 1.17e-155 479
Msa1339930 MtrunA17_Chr6g0461171 53.333 135 61 1 15 149 3 135 1.17e-39 146
Msa1339930 MtrunA17_Chr4g0010641 53.077 130 59 1 898 1027 1 128 1.76e-39 142
Msa1339930 MtrunA17_Chr4g0010701 37.037 108 46 1 896 1003 11 96 1.39e-14 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1339930 AT1G74720.1 70.496 1088 252 12 3 1028 1 1081 0.0 1547
Msa1339930 AT4G11610.2 44.297 1052 494 20 18 1028 7 1007 0.0 884
Msa1339930 AT4G11610.1 44.106 1052 500 19 18 1028 7 1011 0.0 880
Msa1339930 AT3G03680.1 45.549 1056 492 22 14 1028 4 1017 0.0 876
Msa1339930 AT5G17980.1 55.333 750 305 12 293 1028 316 1049 0.0 839
Msa1339930 AT5G17980.1 56.934 137 55 3 15 149 3 137 3.28e-39 158
Msa1339930 AT5G48060.1 43.879 1062 514 22 18 1028 6 1036 0.0 831
Msa1339930 AT1G22610.1 43.715 1082 487 27 16 1028 1 1029 0.0 816
Msa1339930 AT3G57880.4 52.781 773 326 12 278 1028 18 773 0.0 808
Msa1339930 AT3G57880.2 52.781 773 326 12 278 1028 18 773 0.0 808
Msa1339930 AT3G57880.3 52.781 773 326 12 278 1028 18 773 0.0 808
Msa1339930 AT3G57880.1 52.781 773 326 12 278 1028 18 773 0.0 808
Msa1339930 AT1G51570.1 52.632 779 321 15 278 1028 18 776 0.0 800
Msa1339930 AT5G06850.1 52.005 773 325 14 285 1028 39 794 0.0 782
Msa1339930 AT5G12970.1 50.759 790 345 14 262 1028 1 769 0.0 780
Msa1339930 AT4G11610.3 47.073 837 385 14 231 1028 57 874 0.0 772
Msa1339930 AT4G00700.1 41.429 1050 528 21 18 1028 5 1006 0.0 746
Msa1339930 AT4G00700.2 41.429 1050 528 21 18 1028 5 1006 0.0 746
Msa1339930 AT1G04150.1 49.305 791 356 16 268 1028 237 1012 0.0 718
Msa1339930 AT1G04150.1 47.656 128 63 1 18 145 12 135 6.48e-28 122
Msa1339930 AT4G20080.1 49.072 754 348 14 293 1028 39 774 0.0 701
Msa1339930 AT3G61300.1 47.754 779 358 18 272 1028 221 972 0.0 697
Msa1339930 AT3G61300.1 35.036 137 78 4 18 149 6 136 4.67e-12 70.9
Msa1339930 AT3G61720.1 35.019 791 430 24 293 1028 34 795 4.33e-126 403
Msa1339930 AT5G03435.1 36.667 780 419 24 272 1022 7 740 7.87e-126 401
Msa1339930 AT5G03435.2 37.801 582 305 17 272 828 7 556 1.12e-100 328
Msa1339930 AT5G44760.1 39.730 370 179 10 293 654 31 364 3.49e-69 239
Msa1339930 AT5G44760.1 30.137 146 53 1 785 930 355 451 3.68e-14 76.6

Find 295 sgRNAs with CRISPR-Local

Find 349 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGGTAGGGTTAAGCTTTA+TGG 0.105107 tig0003589:+46910 Msa1339930:CDS
GTTTATAATGATAAGAAATT+TGG 0.150072 tig0003589:+46859 Msa1339930:CDS
GGAACTTCCTTGACCATCTT+TGG 0.198935 tig0003589:-46692 None:intergenic
TCGAAACGGCTTGAAGAAAA+TGG 0.209811 tig0003589:+48793 Msa1339930:CDS
TGCAAGGGTGCAAACTGTTT+TGG 0.239098 tig0003589:+49420 Msa1339930:CDS
ATTAGAGTGAAGGTACAATT+AGG 0.242637 tig0003589:+48059 Msa1339930:CDS
ATTCTTGAACTTGGAATCTT+AGG 0.246117 tig0003589:+48449 Msa1339930:CDS
CGTTTCTGACCCGGAGAATA+TGG 0.261356 tig0003589:+46813 Msa1339930:CDS
AAAATGGTTGCTGTGGCTTT+AGG 0.266507 tig0003589:+49565 Msa1339930:CDS
GTTCCATTCCGGCGAGTCAT+TGG 0.269436 tig0003589:-47625 None:intergenic
CGCCAATCTTCTCACCGTTT+GGG 0.269793 tig0003589:-46638 None:intergenic
CTATTCAGTGCCTCCTAAAA+TGG 0.270464 tig0003589:+49549 Msa1339930:CDS
CCGCCAATCTTCTCACCGTT+TGG 0.293001 tig0003589:-46639 None:intergenic
GAAGCTATCCGTTACGGTTC+GGG 0.294645 tig0003589:-48567 None:intergenic
TAGCTCCAAACCACCTGATT+TGG 0.312359 tig0003589:+49363 Msa1339930:CDS
TACTTTACTTGGTCCTTGTT+TGG 0.312550 tig0003589:+49179 Msa1339930:CDS
CACAAGTTCATATCCATTAC+TGG 0.313298 tig0003589:+48763 Msa1339930:CDS
GCATCTGAACTCCATGCTTC+TGG 0.314338 tig0003589:-47909 None:intergenic
TTTATAATGATAAGAAATTT+GGG 0.320068 tig0003589:+46860 Msa1339930:CDS
TGAAGAGGGAAGAGTTTATC+AGG 0.320697 tig0003589:+47149 Msa1339930:CDS
TGATGATGATACTGCATTTC+CGG 0.323781 tig0003589:-47309 None:intergenic
TTCACCGCGAGTGGTGGTTT+TGG 0.325194 tig0003589:+47215 Msa1339930:CDS
GATCAAAGCCCGCGAGTTAT+AGG 0.327596 tig0003589:+47592 Msa1339930:CDS
GTCCCACCGCGAAATCTCTA+TGG 0.335869 tig0003589:+48411 Msa1339930:CDS
CCAGTTGGAATTCTTGAACT+TGG 0.337278 tig0003589:+48440 Msa1339930:CDS
TGAAGCAAAACCGTTGTAAC+TGG 0.339352 tig0003589:-49154 None:intergenic
CATTGGTTCAACTAGATCAT+AGG 0.344419 tig0003589:-47475 None:intergenic
CAAACCACCTGATTTGGTTC+GGG 0.345778 tig0003589:+49369 Msa1339930:CDS
TGATACTGCATTTCCGGTTC+CGG 0.346606 tig0003589:-47303 None:intergenic
TCCGAATCTACCACCGTTAA+CGG 0.347466 tig0003589:+48028 Msa1339930:CDS
CCAAACCACCTGATTTGGTT+CGG 0.347773 tig0003589:+49368 Msa1339930:CDS
CTTGACCATCTTTGGGAAGA+AGG 0.353604 tig0003589:-46684 None:intergenic
GACTTCCTAGTTTGTCTGAT+AGG 0.354170 tig0003589:+49656 Msa1339930:CDS
CTCTCTTCCTCCGGCGGCGG+TGG 0.354839 tig0003589:-47093 None:intergenic
TTAGAGTGAAGGTACAATTA+GGG 0.357179 tig0003589:+48060 Msa1339930:CDS
TCACCTACAGAGCAATTTCT+AGG 0.362645 tig0003589:+47717 Msa1339930:CDS
TTCAAACTAGCCGGAGGCAT+TGG 0.363926 tig0003589:-49622 None:intergenic
TCCATACCAGCTGGTATCTT+GGG 0.370566 tig0003589:-49274 None:intergenic
CGAAGCTATCCGTTACGGTT+CGG 0.376428 tig0003589:-48568 None:intergenic
GAACTTCCTTGACCATCTTT+GGG 0.376568 tig0003589:-46691 None:intergenic
TTCTTCCCGGAGATATCTTT+CGG 0.376626 tig0003589:-47423 None:intergenic
CCGGGTTGAGTTCTTTGAAC+CGG 0.378404 tig0003589:-46765 None:intergenic
TCTTACTGTGTGGCCAAGTA+TGG 0.380462 tig0003589:+48527 Msa1339930:CDS
AATTCTTCATCTAATTCATC+TGG 0.381375 tig0003589:-49328 None:intergenic
CCAGATTTAATTGTTCCAAC+CGG 0.383775 tig0003589:+49205 Msa1339930:CDS
ATCTTCGTCATCCAATGTTT+AGG 0.384224 tig0003589:+49596 Msa1339930:CDS
CGGCGAGTCATTGGGTTCGT+TGG 0.386763 tig0003589:-47616 None:intergenic
TGTGGAGCAAGAGGACTATC+TGG 0.387121 tig0003589:-47783 None:intergenic
GCCGAGTAACGCCGCTTCCT+TGG 0.390755 tig0003589:-48216 None:intergenic
ATCCATACCAGCTGGTATCT+TGG 0.392091 tig0003589:-49275 None:intergenic
CTAATCTCCGGCGCCGTTAA+CGG 0.392366 tig0003589:-48041 None:intergenic
GCCAAATGGTTCCCGTTAGA+AGG 0.393717 tig0003589:+48296 Msa1339930:CDS
TCAAAGAACTCAACCCGGTT+TGG 0.395220 tig0003589:+46770 Msa1339930:CDS
TACGTTGGAGATTTCCGTTT+GGG 0.396619 tig0003589:+47692 Msa1339930:CDS
GCGACATACAACTTTCCGTT+TGG 0.398418 tig0003589:+47859 Msa1339930:CDS
TCCACTTGGTGTGGCCCAAC+AGG 0.398673 tig0003589:+48916 Msa1339930:CDS
TTCCATTCCGGCGAGTCATT+GGG 0.402135 tig0003589:-47624 None:intergenic
GTAGATTCGGAGTTAGATTC+AGG 0.403572 tig0003589:-48016 None:intergenic
CCGGTTGGAACAATTAAATC+TGG 0.406243 tig0003589:-49205 None:intergenic
TTTATCAATCACCGAAGCTT+TGG 0.407372 tig0003589:+47961 Msa1339930:CDS
AGAGCTACAAAATTGTTCAT+TGG 0.408099 tig0003589:+49499 Msa1339930:CDS
TCACCATTACCGTTACCATT+AGG 0.411334 tig0003589:-47393 None:intergenic
CCGAACCAAATCAGGTGGTT+TGG 0.414261 tig0003589:-49368 None:intergenic
GGGTTCAAGCATTGGTTAGT+TGG 0.416297 tig0003589:+49467 Msa1339930:CDS
GAATTGTGGCAGTGTTAGCT+TGG 0.418307 tig0003589:+49083 Msa1339930:CDS
GGCGAGTCATTGGGTTCGTT+GGG 0.418426 tig0003589:-47615 None:intergenic
TTTGCTTCATATACTTTACT+TGG 0.418669 tig0003589:+49168 Msa1339930:CDS
CACCTACGCCTCTGTTTAGA+AGG 0.419906 tig0003589:+48341 Msa1339930:CDS
GCGGTTCGGTTCGCTTGCCC+CGG 0.422998 tig0003589:+48830 Msa1339930:CDS
CCGTAGGTGTATTTGACAAC+TGG 0.423400 tig0003589:+48648 Msa1339930:CDS
AGGTTCTAACCTTCACGAAC+GGG 0.423882 tig0003589:-47554 None:intergenic
AAATCCAAGGGTCCAGGAAA+AGG 0.425305 tig0003589:+48494 Msa1339930:CDS
ACCTTCTAACGGGAACCATT+TGG 0.426014 tig0003589:-48297 None:intergenic
TTGTAGAGGTGAAGAAGCTT+TGG 0.428883 tig0003589:+46945 Msa1339930:CDS
TAACGAACCCGAACCAAATC+AGG 0.429394 tig0003589:-49376 None:intergenic
TCGAAGTCCGCCACCACGTA+AGG 0.430336 tig0003589:-46718 None:intergenic
CGCGGTGAAGGAGGACCGTC+AGG 0.430588 tig0003589:-47201 None:intergenic
TCAAGCAACTCGTTCCAAAC+CGG 0.432570 tig0003589:-46784 None:intergenic
GCCGTTAACGGTGGTAGATT+CGG 0.433227 tig0003589:-48029 None:intergenic
GTTTGAAGAGCTTGAAGTTG+AGG 0.433946 tig0003589:+46837 Msa1339930:CDS
GCGGGAGATGTACGCTCAAC+CGG 0.439542 tig0003589:+47284 Msa1339930:CDS
CCACTGAGCTACCATCTTAG+TGG 0.440567 tig0003589:-48957 None:intergenic
GTTAGAATCGTGAAGGTTCG+CGG 0.443339 tig0003589:+47510 Msa1339930:CDS
CTACGTTGGAGATTTCCGTT+TGG 0.447066 tig0003589:+47691 Msa1339930:CDS
TGCCACAATTCTAAACCAAT+TGG 0.447859 tig0003589:-49071 None:intergenic
TTCACCGTTAGGTTTCTTCC+CGG 0.449009 tig0003589:-47436 None:intergenic
CGGGTTGAGTTCTTTGAACC+GGG 0.451300 tig0003589:-46764 None:intergenic
AGTTGGATTAGAGGTGAAAT+CGG 0.452238 tig0003589:+47000 Msa1339930:CDS
GCAGTGTTAGCTTGGGCTGT+TGG 0.454236 tig0003589:+49091 Msa1339930:CDS
TGGGGCGGTCCTTGTTGAAA+CGG 0.456111 tig0003589:-46619 None:intergenic
GATGTACGCTCAACCGGAAC+CGG 0.457522 tig0003589:+47290 Msa1339930:CDS
TTCCTCTCTTCCTCCGGCGG+CGG 0.461871 tig0003589:-47096 None:intergenic
CAGTCACAGGCATCCGATGA+TGG 0.462725 tig0003589:+47125 Msa1339930:CDS
AAATCAGGTGGTTTGGAGCT+AGG 0.462960 tig0003589:-49361 None:intergenic
TCAAACTAGCCGGAGGCATT+GGG 0.463156 tig0003589:-49621 None:intergenic
TCAACAAGATCCACCGTTGC+GGG 0.465205 tig0003589:+47266 Msa1339930:CDS
ACCCAAGATACCAGCTGGTA+TGG 0.466006 tig0003589:+49273 Msa1339930:CDS
TGATAAACCGCACATGTGTC+AGG 0.466189 tig0003589:-48860 None:intergenic
GTCCGCCACCACGTAAGGGC+TGG 0.472594 tig0003589:-46713 None:intergenic
AGCCAATTGGTTTAGAATTG+TGG 0.473301 tig0003589:+49069 Msa1339930:CDS
GCAAGAACAACCACCGCCGC+CGG 0.473843 tig0003589:+47083 Msa1339930:CDS
CAAAACGCCGGTAGAGTCTC+CGG 0.474134 tig0003589:+47837 Msa1339930:CDS
ATCCTCTCAGATTCACCGTT+AGG 0.477236 tig0003589:-47447 None:intergenic
TGAGGAAAAGTAAAGCCAAT+TGG 0.477748 tig0003589:+49056 Msa1339930:CDS
AAGATTATGAAGAGACCTAA+TGG 0.478269 tig0003589:+47378 Msa1339930:CDS
ACGAACGGGCTTTCAGTTGG+AGG 0.481142 tig0003589:-47540 None:intergenic
CTGGTATCTTGGGTCTAAAA+CGG 0.482340 tig0003589:-49264 None:intergenic
TTTGGAAGAATCACCTTCTC+CGG 0.482881 tig0003589:+47233 Msa1339930:CDS
AATTGTGGCAGTGTTAGCTT+GGG 0.483059 tig0003589:+49084 Msa1339930:CDS
CGCAACCTTCTTCCCAAAGA+TGG 0.483543 tig0003589:+46679 Msa1339930:CDS
ACCAAGGAAGCGGCGTTACT+CGG 0.483659 tig0003589:+48215 Msa1339930:CDS
TTATGACAGGTTAAGAATGT+TGG 0.484006 tig0003589:+49396 Msa1339930:CDS
AAGAAATTTGGGAATGGTAG+TGG 0.487221 tig0003589:+46871 Msa1339930:CDS
CTATCTGGAGAATCACGAAT+AGG 0.489424 tig0003589:-47768 None:intergenic
CTGGCGTATGTTTGCTGATG+TGG 0.491272 tig0003589:+48667 Msa1339930:CDS
AGTAGGACCCACCTTCTAAC+GGG 0.492134 tig0003589:-48307 None:intergenic
ACTCACATGCTTGGAGTATG+AGG 0.492503 tig0003589:+49038 Msa1339930:CDS
CCAAGTTCAAGAATTCCAAC+TGG 0.494458 tig0003589:-48440 None:intergenic
GCCCCAAACGGTGAGAAGAT+TGG 0.495143 tig0003589:+46636 Msa1339930:CDS
TCTTCAAACTCCATATTCTC+CGG 0.496145 tig0003589:-46823 None:intergenic
TACAGCAAAACCGATGCAAC+CGG 0.497708 tig0003589:+47666 Msa1339930:CDS
CGAAACGGCTTGAAGAAAAT+GGG 0.497923 tig0003589:+48794 Msa1339930:CDS
GAGTTCTTTGAACCGGGTGG+TGG 0.498996 tig0003589:-46758 None:intergenic
CCTGGACCCTTGGATTTCAT+CGG 0.499593 tig0003589:-48488 None:intergenic
GGCATTGGGTTCCTAAACAT+TGG 0.499655 tig0003589:-49607 None:intergenic
AGACCTAATGGTAACGGTAA+TGG 0.501527 tig0003589:+47390 Msa1339930:CDS
ACCGCCACGTGCCAGCCAAA+TGG 0.504191 tig0003589:+48282 Msa1339930:CDS
CACCGCCGCCGGAGGAAGAG+AGG 0.505497 tig0003589:+47094 Msa1339930:CDS
TGAGTTCATCGTTTCTGACC+CGG 0.506939 tig0003589:+46804 Msa1339930:CDS
TTCACGAACGGGCTTTCAGT+TGG 0.506939 tig0003589:-47543 None:intergenic
GTTAAGAATGTTGGCTGCAA+GGG 0.506997 tig0003589:+49405 Msa1339930:CDS
CGGTTCGGTTCGCTTGCCCC+GGG 0.508247 tig0003589:+48831 Msa1339930:CDS
TTACTGGTTCTGACTCGAAA+CGG 0.508290 tig0003589:+48779 Msa1339930:CDS
GGGCTGTTGGATTAGCTAAG+TGG 0.510508 tig0003589:+49104 Msa1339930:CDS
CTTCGGTGATTGATAAACCT+TGG 0.511460 tig0003589:-47955 None:intergenic
AATCCAAGGGTCCAGGAAAA+GGG 0.514447 tig0003589:+48495 Msa1339930:CDS
AGGTGAGAGGGTTCAAGCAT+TGG 0.514905 tig0003589:+49459 Msa1339930:CDS
AACCCAATGACTCGCCGGAA+TGG 0.515956 tig0003589:+47622 Msa1339930:CDS
GAGTAACGCCGCTTCCTTGG+TGG 0.517547 tig0003589:-48213 None:intergenic
AGTTTATCAGGTTGAACAGA+TGG 0.517807 tig0003589:+47161 Msa1339930:CDS
CAGATTTAATTGTTCCAACC+GGG 0.519192 tig0003589:+49206 Msa1339930:CDS
CTCTGTAGGTGAATCCCAAA+CGG 0.519575 tig0003589:-47706 None:intergenic
GTTTAGGAACCCAATGCCTC+CGG 0.524667 tig0003589:+49612 Msa1339930:CDS
TGCTTCTGGAAAAGCGTCGT+CGG 0.525056 tig0003589:-47895 None:intergenic
TTCCAGCCCTTACGTGGTGG+CGG 0.525448 tig0003589:+46711 Msa1339930:CDS
TCCTCCTTCACCGCGAGTGG+TGG 0.527371 tig0003589:+47209 Msa1339930:CDS
TGGTTCGGGTTCGTTATGAC+AGG 0.530679 tig0003589:+49383 Msa1339930:CDS
CAACGTAGCACCGGTTGCAT+CGG 0.530953 tig0003589:-47676 None:intergenic
TTAGAATCGTGAAGGTTCGC+GGG 0.531801 tig0003589:+47511 Msa1339930:CDS
CCGCCTAGAAATTGCTCTGT+AGG 0.534656 tig0003589:-47720 None:intergenic
ACTTGGTGTGGCCCAACAGG+AGG 0.534698 tig0003589:+48919 Msa1339930:CDS
TGATCTGACGTAGTGACTTG+AGG 0.535682 tig0003589:-47574 None:intergenic
CAAGCAACTCGTTCCAAACC+GGG 0.536644 tig0003589:-46783 None:intergenic
ACTCTCAGATACCAAAGCTT+CGG 0.537168 tig0003589:-47972 None:intergenic
TGGATGCTGACTCACATGCT+TGG 0.537691 tig0003589:+49029 Msa1339930:CDS
ATTGGTTCAACTAGATCATA+GGG 0.538697 tig0003589:-47474 None:intergenic
TCAACAAGGACCGCCCCAAA+CGG 0.540444 tig0003589:+46624 Msa1339930:CDS
GAAGGAGGACCGTCAGGAAG+TGG 0.540621 tig0003589:-47195 None:intergenic
CCGATGAAATCCAAGGGTCC+AGG 0.541851 tig0003589:+48488 Msa1339930:CDS
ACCACAGCATGTCGTTTCAC+TGG 0.543586 tig0003589:+48120 Msa1339930:CDS
TGATTGTTCCTCTCTTCCTC+CGG 0.543613 tig0003589:-47102 None:intergenic
GCCTCCTAAAATGGTTGCTG+TGG 0.544475 tig0003589:+49558 Msa1339930:CDS
CTTGGAATCTTAGGCGCTCG+TGG 0.546490 tig0003589:+48458 Msa1339930:CDS
TCTTGTTGAACACGAACTAC+CGG 0.547815 tig0003589:-47252 None:intergenic
AGGTTTCCATAGAGATTTCG+CGG 0.548210 tig0003589:-48417 None:intergenic
AACGGTGAGAAGATTGGCGG+TGG 0.548470 tig0003589:+46642 Msa1339930:CDS
CTTCCCTCTTCACCCATCAT+CGG 0.549244 tig0003589:-47138 None:intergenic
TTCGTTGGGCCTATAACTCG+CGG 0.549831 tig0003589:-47601 None:intergenic
TACGCGCCGAAAGATATCTC+CGG 0.550302 tig0003589:+47417 Msa1339930:CDS
GCCCAACAGGAGGCTTTACG+CGG 0.551222 tig0003589:+48929 Msa1339930:CDS
CTTCTAAACAGAGGCGTAGG+TGG 0.551291 tig0003589:-48340 None:intergenic
TCTCTATGGAAACCTCCAGT+TGG 0.551296 tig0003589:+48425 Msa1339930:CDS
GGTTAAGAATGTTGGCTGCA+AGG 0.551608 tig0003589:+49404 Msa1339930:CDS
CGAGGTTGTTCGATACATGT+TGG 0.551957 tig0003589:+49009 Msa1339930:CDS
CTTCAAACTCCATATTCTCC+GGG 0.552338 tig0003589:-46822 None:intergenic
TTTCGAGTCAGAACCAGTAA+TGG 0.553602 tig0003589:-48776 None:intergenic
ATGCACTACATTCGTCCACT+TGG 0.553610 tig0003589:+48902 Msa1339930:CDS
AGAACAACCACCGCCGCCGG+AGG 0.554031 tig0003589:+47086 Msa1339930:CDS
AACGGAAAGTTGTATGTCGC+CGG 0.556257 tig0003589:-47856 None:intergenic
GCCAATCTTCTCACCGTTTG+GGG 0.556670 tig0003589:-46637 None:intergenic
GGTTAGATGATATAAGAAGA+TGG 0.557390 tig0003589:+49125 Msa1339930:CDS
AATGATAAGAAATTTGGGAA+TGG 0.559099 tig0003589:+46865 Msa1339930:CDS
CATCCGATGATGGGTGAAGA+GGG 0.559487 tig0003589:+47135 Msa1339930:CDS
GAGGTTCTAACCTTCACGAA+CGG 0.559610 tig0003589:-47555 None:intergenic
CGATGCAACCGGTGCTACGT+TGG 0.560184 tig0003589:+47677 Msa1339930:CDS
AAAACCACCACTCGCGGTGA+AGG 0.560550 tig0003589:-47213 None:intergenic
TCCTGTTGGGCCACACCAAG+TGG 0.560701 tig0003589:-48917 None:intergenic
ACGCGCCGAAAGATATCTCC+GGG 0.561337 tig0003589:+47418 Msa1339930:CDS
AGATCGCACCACCAAGGAAG+CGG 0.562726 tig0003589:+48205 Msa1339930:CDS
GAAGATCTTCTCTTCGTCGC+CGG 0.563391 tig0003589:+48146 Msa1339930:CDS
CGAACAACCTCGTGCCCCAT+CGG 0.563726 tig0003589:-48998 None:intergenic
GCATCCGATGATGGGTGAAG+AGG 0.563834 tig0003589:+47134 Msa1339930:CDS
AGAGGAACAATCACAGTCAC+AGG 0.565907 tig0003589:+47112 Msa1339930:CDS
GGTCAGAACCCGAACCGTAA+CGG 0.565952 tig0003589:+48559 Msa1339930:CDS
GAGCGAGTGTGTGCCACGTA+TGG 0.566668 tig0003589:-47933 None:intergenic
TTCCATAGAGATTTCGCGGT+GGG 0.569256 tig0003589:-48413 None:intergenic
TGTACTGTTCGTTCCACCGT+GGG 0.569348 tig0003589:-48592 None:intergenic
AGTCACAGGCATCCGATGAT+GGG 0.570113 tig0003589:+47126 Msa1339930:CDS
CCTTGCACTGTCTTAACCGT+AGG 0.571276 tig0003589:+48632 Msa1339930:CDS
TTTAGACCCAAGATACCAGC+TGG 0.572276 tig0003589:+49268 Msa1339930:CDS
CAGTAGGACCCACCTTCTAA+CGG 0.572682 tig0003589:-48308 None:intergenic
TCTACCACCGTTAACGGCGC+CGG 0.574432 tig0003589:+48034 Msa1339930:CDS
TCTAACGGGAACCATTTGGC+TGG 0.574894 tig0003589:-48293 None:intergenic
AAATGGTTCCCGTTAGAAGG+TGG 0.575886 tig0003589:+48299 Msa1339930:CDS
ATACAACTTTCCGTTTGGAT+CGG 0.577068 tig0003589:+47864 Msa1339930:CDS
AACTGAAAGCCCGTTCGTGA+AGG 0.577259 tig0003589:+47545 Msa1339930:CDS
TTAGAAGGTGGGTCCTACTG+TGG 0.577831 tig0003589:+48311 Msa1339930:CDS
TAAGATGGTAGCTCAGTGGC+TGG 0.577993 tig0003589:+48961 Msa1339930:CDS
TGACTCGCCGGAATGGAACC+AGG 0.578461 tig0003589:+47629 Msa1339930:CDS
CTAACAAACAGATACTGCAT+TGG 0.578943 tig0003589:-47492 None:intergenic
TGTACCTTCACTCTAATCTC+CGG 0.580661 tig0003589:-48053 None:intergenic
ACCACCACTCGCGGTGAAGG+AGG 0.581513 tig0003589:-47210 None:intergenic
CCCAACAGGAGGCTTTACGC+GGG 0.582876 tig0003589:+48930 Msa1339930:CDS
TACGTGGTGGCGGACTTCGA+CGG 0.582930 tig0003589:+46721 Msa1339930:CDS
CAACGAACCCAATGACTCGC+CGG 0.583064 tig0003589:+47617 Msa1339930:CDS
CGGTACCATTGTGGAGCAAG+AGG 0.584297 tig0003589:-47792 None:intergenic
AATGGGTGAAATCGAGTTAG+CGG 0.585887 tig0003589:+48811 Msa1339930:CDS
TATGTCGCCGGAGACTCTAC+CGG 0.586518 tig0003589:-47844 None:intergenic
AATCTTGTATCCATACCAGC+TGG 0.589612 tig0003589:-49283 None:intergenic
TCTGTTTGTTAGAATCGTGA+AGG 0.590343 tig0003589:+47503 Msa1339930:CDS
CGTGGCACACACTCGCTCCA+AGG 0.590638 tig0003589:+47938 Msa1339930:CDS
TGAACACGAACTACCGGAGA+AGG 0.591102 tig0003589:-47246 None:intergenic
CAATCACAGAGAACAAGAAG+AGG 0.591111 tig0003589:+48086 Msa1339930:CDS
AATCTTCTCACCGTTTGGGG+CGG 0.592507 tig0003589:-46634 None:intergenic
AGAGCCTCCGATGGGGCACG+AGG 0.594720 tig0003589:+48991 Msa1339930:CDS
CTACATTCGTCCACTTGGTG+TGG 0.594829 tig0003589:+48907 Msa1339930:CDS
GGAAATCTCCAACGTAGCAC+CGG 0.596844 tig0003589:-47685 None:intergenic
GGAATCTTCTAGTGGCTCAC+CGG 0.597195 tig0003589:-48165 None:intergenic
TTATCACGTGCTTGATGAAG+CGG 0.601621 tig0003589:+48367 Msa1339930:CDS
TTCAACAAGATCCACCGTTG+CGG 0.602303 tig0003589:+47265 Msa1339930:CDS
ATCAACCTATCAGACAAACT+AGG 0.603071 tig0003589:-49661 None:intergenic
ATCTTCTACGAGAAGGACCA+TGG 0.603592 tig0003589:-48186 None:intergenic
TAGAAGGTGGGTCCTACTGT+GGG 0.603855 tig0003589:+48312 Msa1339930:CDS
CCACAATGGTACCGTCTCGA+AGG 0.605104 tig0003589:+47801 Msa1339930:CDS
GTGAAATCGAGTTAGCGGTT+CGG 0.605145 tig0003589:+48816 Msa1339930:CDS
ATGAAGAGACCTAATGGTAA+CGG 0.606071 tig0003589:+47384 Msa1339930:CDS
AATGGTTCCCGTTAGAAGGT+GGG 0.608687 tig0003589:+48300 Msa1339930:CDS
AGTTCAAGAATTCCAACTGG+AGG 0.611937 tig0003589:-48437 None:intergenic
CCAAACGGTGAGAAGATTGG+CGG 0.612320 tig0003589:+46639 Msa1339930:CDS
TGGGTCGAAGCTATCCGTTA+CGG 0.615070 tig0003589:-48573 None:intergenic
ACCATTTGGCTGGCACGTGG+CGG 0.615125 tig0003589:-48283 None:intergenic
CCTTCGAGACGGTACCATTG+TGG 0.615235 tig0003589:-47801 None:intergenic
CTACGCCTCTGTTTAGAAGG+TGG 0.615741 tig0003589:+48344 Msa1339930:CDS
GGCCACACAGTAAGAATCAG+TGG 0.616175 tig0003589:-48519 None:intergenic
TGAGCCACTAGAAGATTCCA+TGG 0.617345 tig0003589:+48169 Msa1339930:CDS
AGAGAAAACGAACCACCACC+CGG 0.617915 tig0003589:+46746 Msa1339930:CDS
CTGCTGCGCCACCTTCGAGA+CGG 0.618995 tig0003589:-47812 None:intergenic
CAATGGTACCGTCTCGAAGG+TGG 0.621124 tig0003589:+47804 Msa1339930:CDS
TGGTGCGATCTTCTACGAGA+AGG 0.622059 tig0003589:-48193 None:intergenic
GAACGAACAGTACACATGGC+AGG 0.622431 tig0003589:+48601 Msa1339930:CDS
CTTCTTCCCAAAGATGGTCA+AGG 0.623665 tig0003589:+46685 Msa1339930:CDS
AGGAAGTTCCAGCCCTTACG+TGG 0.623834 tig0003589:+46705 Msa1339930:CDS
TAACGGATAGCTTCGACCCA+CGG 0.625339 tig0003589:+48576 Msa1339930:CDS
CATTGTGTGCCACTTCCTGA+CGG 0.625959 tig0003589:+47186 Msa1339930:CDS
TCTTCTTCCGATGAAATCCA+AGG 0.627021 tig0003589:+48481 Msa1339930:CDS
GTATCTGAGAGTAACAGTAA+TGG 0.628525 tig0003589:+47983 Msa1339930:CDS
CTTCTTCCGATGAAATCCAA+GGG 0.628802 tig0003589:+48482 Msa1339930:CDS
GGAACCATTTGGCTGGCACG+TGG 0.629535 tig0003589:-48286 None:intergenic
TGAGCGTACATCTCCCGCAA+CGG 0.631429 tig0003589:-47279 None:intergenic
GGCGCCGGAGATTAGAGTGA+AGG 0.631671 tig0003589:+48049 Msa1339930:CDS
TAGGTGGACTCTCCCACAGT+AGG 0.634184 tig0003589:-48324 None:intergenic
CCAGTTGTCAAATACACCTA+CGG 0.635674 tig0003589:-48648 None:intergenic
CCTACGGTTAAGACAGTGCA+AGG 0.636191 tig0003589:-48632 None:intergenic
CCGGTTCAAAGAACTCAACC+CGG 0.636336 tig0003589:+46765 Msa1339930:CDS
ATCTCCGGCGCCGTTAACGG+TGG 0.640916 tig0003589:-48038 None:intergenic
ATCATCATCATCCTGACGTG+AGG 0.641393 tig0003589:+47325 Msa1339930:CDS
TCTTCCAAAACCACCACTCG+CGG 0.641790 tig0003589:-47219 None:intergenic
GCCAGTGAAACGACATGCTG+TGG 0.643248 tig0003589:-48121 None:intergenic
AACCTAACGGTGAATCTGAG+AGG 0.643417 tig0003589:+47445 Msa1339930:CDS
GCGTACATCTCCCGCAACGG+TGG 0.645515 tig0003589:-47276 None:intergenic
GCAACGACGCCGTTTCAACA+AGG 0.650190 tig0003589:+46610 Msa1339930:CDS
GTGTACTGTTCGTTCCACCG+TGG 0.657085 tig0003589:-48593 None:intergenic
GTTGAGTTCTTTGAACCGGG+TGG 0.658782 tig0003589:-46761 None:intergenic
AAGTTCCAGCCCTTACGTGG+TGG 0.659152 tig0003589:+46708 Msa1339930:CDS
AGTGAAACGACATGCTGTGG+TGG 0.659402 tig0003589:-48118 None:intergenic
TCTCGATGAGACTATGAACA+TGG 0.660012 tig0003589:+46588 None:intergenic
GAGTTCAGATGCACCATACG+TGG 0.662296 tig0003589:+47920 Msa1339930:CDS
ATAGTCCTCTTGCTCCACAA+TGG 0.663046 tig0003589:+47787 Msa1339930:CDS
AGGACCATGGAATCTTCTAG+TGG 0.663292 tig0003589:-48173 None:intergenic
ATCTCCGGGAAGAAACCTAA+CGG 0.664237 tig0003589:+47432 Msa1339930:CDS
GTCCACTGATTCTTACTGTG+TGG 0.665645 tig0003589:+48517 Msa1339930:CDS
CACCTTCTAAACAGAGGCGT+AGG 0.667135 tig0003589:-48343 None:intergenic
CGTAGAAGATCGCACCACCA+AGG 0.672290 tig0003589:+48199 Msa1339930:CDS
TTGTTCCTCTCTTCCTCCGG+CGG 0.679580 tig0003589:-47099 None:intergenic
TGAGGAAAATGCAAACAATG+AGG 0.684870 tig0003589:+47343 Msa1339930:CDS
GGCGCAGCAGAACAAAACGC+CGG 0.688834 tig0003589:+47825 Msa1339930:CDS
GGATTGAGTTCCGATCCAAA+CGG 0.689297 tig0003589:-47874 None:intergenic
CGAACCCGAACCAAATCAGG+TGG 0.692684 tig0003589:-49373 None:intergenic
CCACTAAGATGGTAGCTCAG+TGG 0.696907 tig0003589:+48957 Msa1339930:CDS
TTAAATCTGGATACCAAACA+AGG 0.703911 tig0003589:-49192 None:intergenic
GGTGGAACGAACAGTACACA+TGG 0.706630 tig0003589:+48597 Msa1339930:CDS
CCTACAGAGCAATTTCTAGG+CGG 0.744243 tig0003589:+47720 Msa1339930:CDS
GATAACCACCTTCTAAACAG+AGG 0.746597 tig0003589:-48349 None:intergenic
ACGTCAGAGGAATGACGACG+TGG 0.747345 tig0003589:-48238 None:intergenic
TTTCCATAGAGATTTCGCGG+TGG 0.768966 tig0003589:-48414 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATAATGATAAGAAATTT+GGG + tig0003589:46860-46879 Msa1339930:CDS 10.0%
!! GTTTATAATGATAAGAAATT+TGG + tig0003589:46859-46878 Msa1339930:CDS 15.0%
!!! TTTTTATATGTTGTTTTGAT+TGG + tig0003589:49229-49248 Msa1339930:CDS 15.0%
! AATGATAAGAAATTTGGGAA+TGG + tig0003589:46865-46884 Msa1339930:CDS 25.0%
!! GTATACGAATTTTACCTATA+CGG - tig0003589:48712-48731 None:intergenic 25.0%
! TTTGCTTCATATACTTTACT+TGG + tig0003589:49168-49187 Msa1339930:CDS 25.0%
! CAAAACAACATATAAAAACC+CGG - tig0003589:49227-49246 None:intergenic 25.0%
!!! ATGTTGTTTTGATTGGAATA+TGG + tig0003589:49236-49255 Msa1339930:CDS 25.0%
! AATTCTTCATCTAATTCATC+TGG - tig0003589:49331-49350 None:intergenic 25.0%
! CAAGAATCATTTTCTTGGTA+GGG + tig0003589:46897-46916 Msa1339930:CDS 30.0%
!!! AGAAGAAAAGTGTTTTCAGT+TGG + tig0003589:46983-47002 Msa1339930:CDS 30.0%
AAGATTATGAAGAGACCTAA+TGG + tig0003589:47378-47397 Msa1339930:CDS 30.0%
! ATTGGTTCAACTAGATCATA+GGG - tig0003589:47477-47496 None:intergenic 30.0%
! ATTAGAGTGAAGGTACAATT+AGG + tig0003589:48059-48078 Msa1339930:CDS 30.0%
! TTAGAGTGAAGGTACAATTA+GGG + tig0003589:48060-48079 Msa1339930:CDS 30.0%
ATTCTTGAACTTGGAATCTT+AGG + tig0003589:48449-48468 Msa1339930:CDS 30.0%
!! TAGTGCATTTTTGGAAGTAA+TGG - tig0003589:48890-48909 None:intergenic 30.0%
GGTTAGATGATATAAGAAGA+TGG + tig0003589:49125-49144 Msa1339930:CDS 30.0%
ATGGAAAAATCCAGTTACAA+CGG + tig0003589:49144-49163 Msa1339930:CDS 30.0%
TTAAATCTGGATACCAAACA+AGG - tig0003589:49195-49214 None:intergenic 30.0%
TTATGACAGGTTAAGAATGT+TGG + tig0003589:49396-49415 Msa1339930:CDS 30.0%
! TGAACAATTTTGTAGCTCTT+GGG - tig0003589:49498-49517 None:intergenic 30.0%
! ATGAACAATTTTGTAGCTCT+TGG - tig0003589:49499-49518 None:intergenic 30.0%
AGAGCTACAAAATTGTTCAT+TGG + tig0003589:49499-49518 Msa1339930:CDS 30.0%
TCTTCAAACTCCATATTCTC+CGG - tig0003589:46826-46845 None:intergenic 35.0%
AAGAAATTTGGGAATGGTAG+TGG + tig0003589:46871-46890 Msa1339930:CDS 35.0%
! GCAAGAATCATTTTCTTGGT+AGG + tig0003589:46896-46915 Msa1339930:CDS 35.0%
!! AGTGTTTTCAGTTGGATTAG+AGG + tig0003589:46991-47010 Msa1339930:CDS 35.0%
! AGTTGGATTAGAGGTGAAAT+CGG + tig0003589:47000-47019 Msa1339930:CDS 35.0%
!! AGTTTATCAGGTTGAACAGA+TGG + tig0003589:47161-47180 Msa1339930:CDS 35.0%
! TGATGATGATACTGCATTTC+CGG - tig0003589:47312-47331 None:intergenic 35.0%
TGAGGAAAATGCAAACAATG+AGG + tig0003589:47343-47362 Msa1339930:CDS 35.0%
ATGAAGAGACCTAATGGTAA+CGG + tig0003589:47384-47403 Msa1339930:CDS 35.0%
!! CATTGGTTCAACTAGATCAT+AGG - tig0003589:47478-47497 None:intergenic 35.0%
CTAACAAACAGATACTGCAT+TGG - tig0003589:47495-47514 None:intergenic 35.0%
! TCTGTTTGTTAGAATCGTGA+AGG + tig0003589:47503-47522 Msa1339930:CDS 35.0%
ATACAACTTTCCGTTTGGAT+CGG + tig0003589:47864-47883 Msa1339930:CDS 35.0%
TTTATCAATCACCGAAGCTT+TGG + tig0003589:47961-47980 Msa1339930:CDS 35.0%
GTATCTGAGAGTAACAGTAA+TGG + tig0003589:47983-48002 Msa1339930:CDS 35.0%
! ATTTTACCTATACGGCAATC+TGG - tig0003589:48704-48723 None:intergenic 35.0%
CACAAGTTCATATCCATTAC+TGG + tig0003589:48763-48782 Msa1339930:CDS 35.0%
TGAGGAAAAGTAAAGCCAAT+TGG + tig0003589:49056-49075 Msa1339930:CDS 35.0%
! AGCCAATTGGTTTAGAATTG+TGG + tig0003589:49069-49088 Msa1339930:CDS 35.0%
TGCCACAATTCTAAACCAAT+TGG - tig0003589:49074-49093 None:intergenic 35.0%
TACTTTACTTGGTCCTTGTT+TGG + tig0003589:49179-49198 Msa1339930:CDS 35.0%
CCAGATTTAATTGTTCCAAC+CGG + tig0003589:49205-49224 Msa1339930:CDS 35.0%
CAGATTTAATTGTTCCAACC+GGG + tig0003589:49206-49225 Msa1339930:CDS 35.0%
ACAACATATAAAAACCCGGT+TGG - tig0003589:49223-49242 None:intergenic 35.0%
ATCTTCGTCATCCAATGTTT+AGG + tig0003589:49596-49615 Msa1339930:CDS 35.0%
CTGAAAAAGTTCAAACTAGC+CGG - tig0003589:49634-49653 None:intergenic 35.0%
ATCAACCTATCAGACAAACT+AGG - tig0003589:49664-49683 None:intergenic 35.0%
GAACTTCCTTGACCATCTTT+GGG - tig0003589:46694-46713 None:intergenic 40.0%
CTTCAAACTCCATATTCTCC+GGG - tig0003589:46825-46844 None:intergenic 40.0%
GTTTGAAGAGCTTGAAGTTG+AGG + tig0003589:46837-46856 Msa1339930:CDS 40.0%
! GGTCGCAAGAATCATTTTCT+TGG + tig0003589:46892-46911 Msa1339930:CDS 40.0%
CTTGGTAGGGTTAAGCTTTA+TGG + tig0003589:46910-46929 Msa1339930:CDS 40.0%
! GGAACACAGTTTTCTTGTAG+AGG + tig0003589:46931-46950 Msa1339930:CDS 40.0%
TTGTAGAGGTGAAGAAGCTT+TGG + tig0003589:46945-46964 Msa1339930:CDS 40.0%
TGAAGAGGGAAGAGTTTATC+AGG + tig0003589:47149-47168 Msa1339930:CDS 40.0%
TTTGGAAGAATCACCTTCTC+CGG + tig0003589:47233-47252 Msa1339930:CDS 40.0%
TCTTGTTGAACACGAACTAC+CGG - tig0003589:47255-47274 None:intergenic 40.0%
!! AGACCTAATGGTAACGGTAA+TGG + tig0003589:47390-47409 Msa1339930:CDS 40.0%
TCACCATTACCGTTACCATT+AGG - tig0003589:47396-47415 None:intergenic 40.0%
TTCTTCCCGGAGATATCTTT+CGG - tig0003589:47426-47445 None:intergenic 40.0%
!! ATCGGTTTTGCTGTAACCAA+GGG - tig0003589:47661-47680 None:intergenic 40.0%
TACGTTGGAGATTTCCGTTT+GGG + tig0003589:47692-47711 Msa1339930:CDS 40.0%
TCACCTACAGAGCAATTTCT+AGG + tig0003589:47717-47736 Msa1339930:CDS 40.0%
CTATCTGGAGAATCACGAAT+AGG - tig0003589:47771-47790 None:intergenic 40.0%
CTTCGGTGATTGATAAACCT+TGG - tig0003589:47958-47977 None:intergenic 40.0%
ACTCTCAGATACCAAAGCTT+CGG - tig0003589:47975-47994 None:intergenic 40.0%
GTAGATTCGGAGTTAGATTC+AGG - tig0003589:48019-48038 None:intergenic 40.0%
TGTACCTTCACTCTAATCTC+CGG - tig0003589:48056-48075 None:intergenic 40.0%
CAATCACAGAGAACAAGAAG+AGG + tig0003589:48086-48105 Msa1339930:CDS 40.0%
GATAACCACCTTCTAAACAG+AGG - tig0003589:48352-48371 None:intergenic 40.0%
TTATCACGTGCTTGATGAAG+CGG + tig0003589:48367-48386 Msa1339930:CDS 40.0%
AGGTTTCCATAGAGATTTCG+CGG - tig0003589:48420-48439 None:intergenic 40.0%
AGTTCAAGAATTCCAACTGG+AGG - tig0003589:48440-48459 None:intergenic 40.0%
CCAAGTTCAAGAATTCCAAC+TGG - tig0003589:48443-48462 None:intergenic 40.0%
CCAGTTGGAATTCTTGAACT+TGG + tig0003589:48440-48459 Msa1339930:CDS 40.0%
TCTTCTTCCGATGAAATCCA+AGG + tig0003589:48481-48500 Msa1339930:CDS 40.0%
CTTCTTCCGATGAAATCCAA+GGG + tig0003589:48482-48501 Msa1339930:CDS 40.0%
TGGCCAAGTATGGCAAAAAA+TGG + tig0003589:48537-48556 Msa1339930:CDS 40.0%
GGCCAAGTATGGCAAAAAAT+GGG + tig0003589:48538-48557 Msa1339930:CDS 40.0%
!!! GACCCATTTTTTGCCATACT+TGG - tig0003589:48543-48562 None:intergenic 40.0%
CCAGTTGTCAAATACACCTA+CGG - tig0003589:48651-48670 None:intergenic 40.0%
GAAAAACCAGATTGCCGTAT+AGG + tig0003589:48695-48714 Msa1339930:CDS 40.0%
! TTTCGAGTCAGAACCAGTAA+TGG - tig0003589:48779-48798 None:intergenic 40.0%
!! TTACTGGTTCTGACTCGAAA+CGG + tig0003589:48779-48798 Msa1339930:CDS 40.0%
TCGAAACGGCTTGAAGAAAA+TGG + tig0003589:48793-48812 Msa1339930:CDS 40.0%
CGAAACGGCTTGAAGAAAAT+GGG + tig0003589:48794-48813 Msa1339930:CDS 40.0%
AATGGGTGAAATCGAGTTAG+CGG + tig0003589:48811-48830 Msa1339930:CDS 40.0%
ACATGTGTCAGGAAAAAACC+CGG - tig0003589:48852-48871 None:intergenic 40.0%
!!! GTTTTTTCCTGACACATGTG+CGG + tig0003589:48853-48872 Msa1339930:CDS 40.0%
! GGACGAATGTAGTGCATTTT+TGG - tig0003589:48899-48918 None:intergenic 40.0%
! AATTGTGGCAGTGTTAGCTT+GGG + tig0003589:49084-49103 Msa1339930:CDS 40.0%
TGAAGCAAAACCGTTGTAAC+TGG - tig0003589:49157-49176 None:intergenic 40.0%
CCGGTTGGAACAATTAAATC+TGG - tig0003589:49208-49227 None:intergenic 40.0%
CTGGTATCTTGGGTCTAAAA+CGG - tig0003589:49267-49286 None:intergenic 40.0%
AATCTTGTATCCATACCAGC+TGG - tig0003589:49286-49305 None:intergenic 40.0%
! GTTAAGAATGTTGGCTGCAA+GGG + tig0003589:49405-49424 Msa1339930:CDS 40.0%
! TTGGGTGATTTTGCAACACA+AGG + tig0003589:49439-49458 Msa1339930:CDS 40.0%
! ATTTTGCAACACAAGGTGAG+AGG + tig0003589:49446-49465 Msa1339930:CDS 40.0%
! TTTTGCAACACAAGGTGAGA+GGG + tig0003589:49447-49466 Msa1339930:CDS 40.0%
CTATTCAGTGCCTCCTAAAA+TGG + tig0003589:49549-49568 Msa1339930:CDS 40.0%
! AAAGCCACAGCAACCATTTT+AGG - tig0003589:49565-49584 None:intergenic 40.0%
AAAATGGTTGCTGTGGCTTT+AGG + tig0003589:49565-49584 Msa1339930:CDS 40.0%
AAAAAGTTCAAACTAGCCGG+AGG - tig0003589:49631-49650 None:intergenic 40.0%
! GACTTCCTAGTTTGTCTGAT+AGG + tig0003589:49656-49675 Msa1339930:CDS 40.0%
! CTTGACCATCTTTGGGAAGA+AGG - tig0003589:46687-46706 None:intergenic 45.0%
CTTCTTCCCAAAGATGGTCA+AGG + tig0003589:46685-46704 Msa1339930:CDS 45.0%
GGAACTTCCTTGACCATCTT+TGG - tig0003589:46695-46714 None:intergenic 45.0%
TCAAAGAACTCAACCCGGTT+TGG + tig0003589:46770-46789 Msa1339930:CDS 45.0%
TCAAGCAACTCGTTCCAAAC+CGG - tig0003589:46787-46806 None:intergenic 45.0%
TGAGTTCATCGTTTCTGACC+CGG + tig0003589:46804-46823 Msa1339930:CDS 45.0%
TGATTGTTCCTCTCTTCCTC+CGG - tig0003589:47105-47124 None:intergenic 45.0%
AGAGGAACAATCACAGTCAC+AGG + tig0003589:47112-47131 Msa1339930:CDS 45.0%
TTCAACAAGATCCACCGTTG+CGG + tig0003589:47265-47284 Msa1339930:CDS 45.0%
TGATACTGCATTTCCGGTTC+CGG - tig0003589:47306-47325 None:intergenic 45.0%
ATCATCATCATCCTGACGTG+AGG + tig0003589:47325-47344 Msa1339930:CDS 45.0%
! GTTTGCATTTTCCTCACGTC+AGG - tig0003589:47339-47358 None:intergenic 45.0%
ATCTCCGGGAAGAAACCTAA+CGG + tig0003589:47432-47451 Msa1339930:CDS 45.0%
TTCACCGTTAGGTTTCTTCC+CGG - tig0003589:47439-47458 None:intergenic 45.0%
AACCTAACGGTGAATCTGAG+AGG + tig0003589:47445-47464 Msa1339930:CDS 45.0%
ATCCTCTCAGATTCACCGTT+AGG - tig0003589:47450-47469 None:intergenic 45.0%
GTTAGAATCGTGAAGGTTCG+CGG + tig0003589:47510-47529 Msa1339930:CDS 45.0%
TTAGAATCGTGAAGGTTCGC+GGG + tig0003589:47511-47530 Msa1339930:CDS 45.0%
! AGGTTCTAACCTTCACGAAC+GGG - tig0003589:47557-47576 None:intergenic 45.0%
! GAGGTTCTAACCTTCACGAA+CGG - tig0003589:47558-47577 None:intergenic 45.0%
TGATCTGACGTAGTGACTTG+AGG - tig0003589:47577-47596 None:intergenic 45.0%
GCAAAAACCTGGTTCCATTC+CGG - tig0003589:47639-47658 None:intergenic 45.0%
TGTAACCAAGGGCAAAAACC+TGG - tig0003589:47650-47669 None:intergenic 45.0%
!!! CATCGGTTTTGCTGTAACCA+AGG - tig0003589:47662-47681 None:intergenic 45.0%
TACAGCAAAACCGATGCAAC+CGG + tig0003589:47666-47685 Msa1339930:CDS 45.0%
CTACGTTGGAGATTTCCGTT+TGG + tig0003589:47691-47710 Msa1339930:CDS 45.0%
CTCTGTAGGTGAATCCCAAA+CGG - tig0003589:47709-47728 None:intergenic 45.0%
! CCTACAGAGCAATTTCTAGG+CGG + tig0003589:47720-47739 Msa1339930:CDS 45.0%
ATAGTCCTCTTGCTCCACAA+TGG + tig0003589:47787-47806 Msa1339930:CDS 45.0%
AACGGAAAGTTGTATGTCGC+CGG - tig0003589:47859-47878 None:intergenic 45.0%
GCGACATACAACTTTCCGTT+TGG + tig0003589:47859-47878 Msa1339930:CDS 45.0%
GGATTGAGTTCCGATCCAAA+CGG - tig0003589:47877-47896 None:intergenic 45.0%
TCCGAATCTACCACCGTTAA+CGG + tig0003589:48028-48047 Msa1339930:CDS 45.0%
TGAGCCACTAGAAGATTCCA+TGG + tig0003589:48169-48188 Msa1339930:CDS 45.0%
AGGACCATGGAATCTTCTAG+TGG - tig0003589:48176-48195 None:intergenic 45.0%
ATCTTCTACGAGAAGGACCA+TGG - tig0003589:48189-48208 None:intergenic 45.0%
ACCTTCTAACGGGAACCATT+TGG - tig0003589:48300-48319 None:intergenic 45.0%
AAATGGTTCCCGTTAGAAGG+TGG + tig0003589:48299-48318 Msa1339930:CDS 45.0%
AATGGTTCCCGTTAGAAGGT+GGG + tig0003589:48300-48319 Msa1339930:CDS 45.0%
TTCCATAGAGATTTCGCGGT+GGG - tig0003589:48416-48435 None:intergenic 45.0%
TTTCCATAGAGATTTCGCGG+TGG - tig0003589:48417-48436 None:intergenic 45.0%
TCTCTATGGAAACCTCCAGT+TGG + tig0003589:48425-48444 Msa1339930:CDS 45.0%
AAATCCAAGGGTCCAGGAAA+AGG + tig0003589:48494-48513 Msa1339930:CDS 45.0%
AATCCAAGGGTCCAGGAAAA+GGG + tig0003589:48495-48514 Msa1339930:CDS 45.0%
!! GTCCACTGATTCTTACTGTG+TGG + tig0003589:48517-48536 Msa1339930:CDS 45.0%
TCTTACTGTGTGGCCAAGTA+TGG + tig0003589:48527-48546 Msa1339930:CDS 45.0%
CCGTAGGTGTATTTGACAAC+TGG + tig0003589:48648-48667 Msa1339930:CDS 45.0%
GTGAAATCGAGTTAGCGGTT+CGG + tig0003589:48816-48835 Msa1339930:CDS 45.0%
ATGTGTCAGGAAAAAACCCG+GGG - tig0003589:48850-48869 None:intergenic 45.0%
CATGTGTCAGGAAAAAACCC+GGG - tig0003589:48851-48870 None:intergenic 45.0%
TGATAAACCGCACATGTGTC+AGG - tig0003589:48863-48882 None:intergenic 45.0%
ATGCACTACATTCGTCCACT+TGG + tig0003589:48902-48921 Msa1339930:CDS 45.0%
CGAGGTTGTTCGATACATGT+TGG + tig0003589:49009-49028 Msa1339930:CDS 45.0%
ACTCACATGCTTGGAGTATG+AGG + tig0003589:49038-49057 Msa1339930:CDS 45.0%
GAATTGTGGCAGTGTTAGCT+TGG + tig0003589:49083-49102 Msa1339930:CDS 45.0%
TTTAGACCCAAGATACCAGC+TGG + tig0003589:49268-49287 Msa1339930:CDS 45.0%
TCCATACCAGCTGGTATCTT+GGG - tig0003589:49277-49296 None:intergenic 45.0%
ATCCATACCAGCTGGTATCT+TGG - tig0003589:49278-49297 None:intergenic 45.0%
! AAATCAGGTGGTTTGGAGCT+AGG - tig0003589:49364-49383 None:intergenic 45.0%
TAGCTCCAAACCACCTGATT+TGG + tig0003589:49363-49382 Msa1339930:CDS 45.0%
!! CCAAACCACCTGATTTGGTT+CGG + tig0003589:49368-49387 Msa1339930:CDS 45.0%
!! CAAACCACCTGATTTGGTTC+GGG + tig0003589:49369-49388 Msa1339930:CDS 45.0%
TAACGAACCCGAACCAAATC+AGG - tig0003589:49379-49398 None:intergenic 45.0%
! GGTTAAGAATGTTGGCTGCA+AGG + tig0003589:49404-49423 Msa1339930:CDS 45.0%
!! TGCAAGGGTGCAAACTGTTT+TGG + tig0003589:49420-49439 Msa1339930:CDS 45.0%
!! GCAAGGGTGCAAACTGTTTT+GGG + tig0003589:49421-49440 Msa1339930:CDS 45.0%
!! GGGTTCAAGCATTGGTTAGT+TGG + tig0003589:49467-49486 Msa1339930:CDS 45.0%
! GGCATTGGGTTCCTAAACAT+TGG - tig0003589:49610-49629 None:intergenic 45.0%
AATCTTCTCACCGTTTGGGG+CGG - tig0003589:46637-46656 None:intergenic 50.0%
GCCAATCTTCTCACCGTTTG+GGG - tig0003589:46640-46659 None:intergenic 50.0%
CGCCAATCTTCTCACCGTTT+GGG - tig0003589:46641-46660 None:intergenic 50.0%
CCAAACGGTGAGAAGATTGG+CGG + tig0003589:46639-46658 Msa1339930:CDS 50.0%
CGCAACCTTCTTCCCAAAGA+TGG + tig0003589:46679-46698 Msa1339930:CDS 50.0%
AGAGAAAACGAACCACCACC+CGG + tig0003589:46746-46765 Msa1339930:CDS 50.0%
GTTGAGTTCTTTGAACCGGG+TGG - tig0003589:46764-46783 None:intergenic 50.0%
! CGGGTTGAGTTCTTTGAACC+GGG - tig0003589:46767-46786 None:intergenic 50.0%
! CCGGGTTGAGTTCTTTGAAC+CGG - tig0003589:46768-46787 None:intergenic 50.0%
CCGGTTCAAAGAACTCAACC+CGG + tig0003589:46765-46784 Msa1339930:CDS 50.0%
CAAGCAACTCGTTCCAAACC+GGG - tig0003589:46786-46805 None:intergenic 50.0%
CGTTTCTGACCCGGAGAATA+TGG + tig0003589:46813-46832 Msa1339930:CDS 50.0%
AGTCACAGGCATCCGATGAT+GGG + tig0003589:47126-47145 Msa1339930:CDS 50.0%
!! CATCCGATGATGGGTGAAGA+GGG + tig0003589:47135-47154 Msa1339930:CDS 50.0%
CTTCCCTCTTCACCCATCAT+CGG - tig0003589:47141-47160 None:intergenic 50.0%
!! CATTGTGTGCCACTTCCTGA+CGG + tig0003589:47186-47205 Msa1339930:CDS 50.0%
TCTTCCAAAACCACCACTCG+CGG - tig0003589:47222-47241 None:intergenic 50.0%
TGAACACGAACTACCGGAGA+AGG - tig0003589:47249-47268 None:intergenic 50.0%
TCAACAAGATCCACCGTTGC+GGG + tig0003589:47266-47285 Msa1339930:CDS 50.0%
TACGCGCCGAAAGATATCTC+CGG + tig0003589:47417-47436 Msa1339930:CDS 50.0%
! TTCACGAACGGGCTTTCAGT+TGG - tig0003589:47546-47565 None:intergenic 50.0%
AACTGAAAGCCCGTTCGTGA+AGG + tig0003589:47545-47564 Msa1339930:CDS 50.0%
GATCAAAGCCCGCGAGTTAT+AGG + tig0003589:47592-47611 Msa1339930:CDS 50.0%
TTCGTTGGGCCTATAACTCG+CGG - tig0003589:47604-47623 None:intergenic 50.0%
TTCCATTCCGGCGAGTCATT+GGG - tig0003589:47627-47646 None:intergenic 50.0%
! TGGAACCAGGTTTTTGCCCT+TGG + tig0003589:47642-47661 Msa1339930:CDS 50.0%
GGAAATCTCCAACGTAGCAC+CGG - tig0003589:47688-47707 None:intergenic 50.0%
CCGCCTAGAAATTGCTCTGT+AGG - tig0003589:47723-47742 None:intergenic 50.0%
TGTGGAGCAAGAGGACTATC+TGG - tig0003589:47786-47805 None:intergenic 50.0%
!! TGCTTCTGGAAAAGCGTCGT+CGG - tig0003589:47898-47917 None:intergenic 50.0%
! ACGACGCTTTTCCAGAAGCA+TGG + tig0003589:47898-47917 Msa1339930:CDS 50.0%
GCATCTGAACTCCATGCTTC+TGG - tig0003589:47912-47931 None:intergenic 50.0%
GAGTTCAGATGCACCATACG+TGG + tig0003589:47920-47939 Msa1339930:CDS 50.0%
GCCGTTAACGGTGGTAGATT+CGG - tig0003589:48032-48051 None:intergenic 50.0%
AGTGAAACGACATGCTGTGG+TGG - tig0003589:48121-48140 None:intergenic 50.0%
! ACCACAGCATGTCGTTTCAC+TGG + tig0003589:48120-48139 Msa1339930:CDS 50.0%
GAAGATCTTCTCTTCGTCGC+CGG + tig0003589:48146-48165 Msa1339930:CDS 50.0%
GGAATCTTCTAGTGGCTCAC+CGG - tig0003589:48168-48187 None:intergenic 50.0%
TGGTGCGATCTTCTACGAGA+AGG - tig0003589:48196-48215 None:intergenic 50.0%
TCTAACGGGAACCATTTGGC+TGG - tig0003589:48296-48315 None:intergenic 50.0%
GCCAAATGGTTCCCGTTAGA+AGG + tig0003589:48296-48315 Msa1339930:CDS 50.0%
AGTAGGACCCACCTTCTAAC+GGG - tig0003589:48310-48329 None:intergenic 50.0%
CAGTAGGACCCACCTTCTAA+CGG - tig0003589:48311-48330 None:intergenic 50.0%
TTAGAAGGTGGGTCCTACTG+TGG + tig0003589:48311-48330 Msa1339930:CDS 50.0%
TAGAAGGTGGGTCCTACTGT+GGG + tig0003589:48312-48331 Msa1339930:CDS 50.0%
! CTTCTAAACAGAGGCGTAGG+TGG - tig0003589:48343-48362 None:intergenic 50.0%
CACCTACGCCTCTGTTTAGA+AGG + tig0003589:48341-48360 Msa1339930:CDS 50.0%
! CACCTTCTAAACAGAGGCGT+AGG - tig0003589:48346-48365 None:intergenic 50.0%
CTACGCCTCTGTTTAGAAGG+TGG + tig0003589:48344-48363 Msa1339930:CDS 50.0%
CCTGGACCCTTGGATTTCAT+CGG - tig0003589:48491-48510 None:intergenic 50.0%
! GAATCAGTGGACCCTTTTCC+TGG - tig0003589:48509-48528 None:intergenic 50.0%
GGCCACACAGTAAGAATCAG+TGG - tig0003589:48522-48541 None:intergenic 50.0%
GAAGCTATCCGTTACGGTTC+GGG - tig0003589:48570-48589 None:intergenic 50.0%
CGAAGCTATCCGTTACGGTT+CGG - tig0003589:48571-48590 None:intergenic 50.0%
TGGGTCGAAGCTATCCGTTA+CGG - tig0003589:48576-48595 None:intergenic 50.0%
! TAACGGATAGCTTCGACCCA+CGG + tig0003589:48576-48595 Msa1339930:CDS 50.0%
TGTACTGTTCGTTCCACCGT+GGG - tig0003589:48595-48614 None:intergenic 50.0%
GGTGGAACGAACAGTACACA+TGG + tig0003589:48597-48616 Msa1339930:CDS 50.0%
GAACGAACAGTACACATGGC+AGG + tig0003589:48601-48620 Msa1339930:CDS 50.0%
CCTACGGTTAAGACAGTGCA+AGG - tig0003589:48635-48654 None:intergenic 50.0%
CCTTGCACTGTCTTAACCGT+AGG + tig0003589:48632-48651 Msa1339930:CDS 50.0%
! CTGGCGTATGTTTGCTGATG+TGG + tig0003589:48667-48686 Msa1339930:CDS 50.0%
! CTACATTCGTCCACTTGGTG+TGG + tig0003589:48907-48926 Msa1339930:CDS 50.0%
CCACTGAGCTACCATCTTAG+TGG - tig0003589:48960-48979 None:intergenic 50.0%
CCACTAAGATGGTAGCTCAG+TGG + tig0003589:48957-48976 Msa1339930:CDS 50.0%
TAAGATGGTAGCTCAGTGGC+TGG + tig0003589:48961-48980 Msa1339930:CDS 50.0%
!! TGGATGCTGACTCACATGCT+TGG + tig0003589:49029-49048 Msa1339930:CDS 50.0%
!! GGGCTGTTGGATTAGCTAAG+TGG + tig0003589:49104-49123 Msa1339930:CDS 50.0%
ACCCAAGATACCAGCTGGTA+TGG + tig0003589:49273-49292 Msa1339930:CDS 50.0%
CCGAACCAAATCAGGTGGTT+TGG - tig0003589:49371-49390 None:intergenic 50.0%
! TGGTTCGGGTTCGTTATGAC+AGG + tig0003589:49383-49402 Msa1339930:CDS 50.0%
AGGTGAGAGGGTTCAAGCAT+TGG + tig0003589:49459-49478 Msa1339930:CDS 50.0%
GCCTCCTAAAATGGTTGCTG+TGG + tig0003589:49558-49577 Msa1339930:CDS 50.0%
! GCCACAGCAACCATTTTAGG+AGG - tig0003589:49562-49581 None:intergenic 50.0%
GTTTAGGAACCCAATGCCTC+CGG + tig0003589:49612-49631 Msa1339930:CDS 50.0%
!! TCAAACTAGCCGGAGGCATT+GGG - tig0003589:49624-49643 None:intergenic 50.0%
! TTCAAACTAGCCGGAGGCAT+TGG - tig0003589:49625-49644 None:intergenic 50.0%
GCAACGACGCCGTTTCAACA+AGG + tig0003589:46610-46629 Msa1339930:CDS 55.0%
TGGGGCGGTCCTTGTTGAAA+CGG - tig0003589:46622-46641 None:intergenic 55.0%
TCAACAAGGACCGCCCCAAA+CGG + tig0003589:46624-46643 Msa1339930:CDS 55.0%
GCCCCAAACGGTGAGAAGAT+TGG + tig0003589:46636-46655 Msa1339930:CDS 55.0%
CCGCCAATCTTCTCACCGTT+TGG - tig0003589:46642-46661 None:intergenic 55.0%
AACGGTGAGAAGATTGGCGG+TGG + tig0003589:46642-46661 Msa1339930:CDS 55.0%
AGGAAGTTCCAGCCCTTACG+TGG + tig0003589:46705-46724 Msa1339930:CDS 55.0%
AAGTTCCAGCCCTTACGTGG+TGG + tig0003589:46708-46727 Msa1339930:CDS 55.0%
GAGTTCTTTGAACCGGGTGG+TGG - tig0003589:46761-46780 None:intergenic 55.0%
TTGTTCCTCTCTTCCTCCGG+CGG - tig0003589:47102-47121 None:intergenic 55.0%
CAGTCACAGGCATCCGATGA+TGG + tig0003589:47125-47144 Msa1339930:CDS 55.0%
!! GCATCCGATGATGGGTGAAG+AGG + tig0003589:47134-47153 Msa1339930:CDS 55.0%
AAAACCACCACTCGCGGTGA+AGG - tig0003589:47216-47235 None:intergenic 55.0%
! TTCACCGCGAGTGGTGGTTT+TGG + tig0003589:47215-47234 Msa1339930:CDS 55.0%
TGAGCGTACATCTCCCGCAA+CGG - tig0003589:47282-47301 None:intergenic 55.0%
GATGTACGCTCAACCGGAAC+CGG + tig0003589:47290-47309 Msa1339930:CDS 55.0%
ACGCGCCGAAAGATATCTCC+GGG + tig0003589:47418-47437 Msa1339930:CDS 55.0%
! ACGAACGGGCTTTCAGTTGG+AGG - tig0003589:47543-47562 None:intergenic 55.0%
TCGTTGGGCCTATAACTCGC+GGG - tig0003589:47603-47622 None:intergenic 55.0%
GGCGAGTCATTGGGTTCGTT+GGG - tig0003589:47618-47637 None:intergenic 55.0%
CAACGAACCCAATGACTCGC+CGG + tig0003589:47617-47636 Msa1339930:CDS 55.0%
AACCCAATGACTCGCCGGAA+TGG + tig0003589:47622-47641 Msa1339930:CDS 55.0%
GTTCCATTCCGGCGAGTCAT+TGG - tig0003589:47628-47647 None:intergenic 55.0%
!! CAACGTAGCACCGGTTGCAT+CGG - tig0003589:47679-47698 None:intergenic 55.0%
CGGTACCATTGTGGAGCAAG+AGG - tig0003589:47795-47814 None:intergenic 55.0%
CCTTCGAGACGGTACCATTG+TGG - tig0003589:47804-47823 None:intergenic 55.0%
CCACAATGGTACCGTCTCGA+AGG + tig0003589:47801-47820 Msa1339930:CDS 55.0%
CAATGGTACCGTCTCGAAGG+TGG + tig0003589:47804-47823 Msa1339930:CDS 55.0%
CAAAACGCCGGTAGAGTCTC+CGG + tig0003589:47837-47856 Msa1339930:CDS 55.0%
TATGTCGCCGGAGACTCTAC+CGG - tig0003589:47847-47866 None:intergenic 55.0%
CTAATCTCCGGCGCCGTTAA+CGG - tig0003589:48044-48063 None:intergenic 55.0%
GCCAGTGAAACGACATGCTG+TGG - tig0003589:48124-48143 None:intergenic 55.0%
CGTAGAAGATCGCACCACCA+AGG + tig0003589:48199-48218 Msa1339930:CDS 55.0%
AGATCGCACCACCAAGGAAG+CGG + tig0003589:48205-48224 Msa1339930:CDS 55.0%
ACCAAGGAAGCGGCGTTACT+CGG + tig0003589:48215-48234 Msa1339930:CDS 55.0%
ACGTCAGAGGAATGACGACG+TGG - tig0003589:48241-48260 None:intergenic 55.0%
CGCTGTTCGATTGACGTCAG+AGG - tig0003589:48254-48273 None:intergenic 55.0%
! TAGGTGGACTCTCCCACAGT+AGG - tig0003589:48327-48346 None:intergenic 55.0%
GTCCCACCGCGAAATCTCTA+TGG + tig0003589:48411-48430 Msa1339930:CDS 55.0%
CTTGGAATCTTAGGCGCTCG+TGG + tig0003589:48458-48477 Msa1339930:CDS 55.0%
CCGATGAAATCCAAGGGTCC+AGG + tig0003589:48488-48507 Msa1339930:CDS 55.0%
GGTCAGAACCCGAACCGTAA+CGG + tig0003589:48559-48578 Msa1339930:CDS 55.0%
GTGTACTGTTCGTTCCACCG+TGG - tig0003589:48596-48615 None:intergenic 55.0%
! GCAGTGTTAGCTTGGGCTGT+TGG + tig0003589:49091-49110 Msa1339930:CDS 55.0%
CGAACCCGAACCAAATCAGG+TGG - tig0003589:49376-49395 None:intergenic 55.0%
TTCCAGCCCTTACGTGGTGG+CGG + tig0003589:46711-46730 Msa1339930:CDS 60.0%
CGAAGTCCGCCACCACGTAA+GGG - tig0003589:46720-46739 None:intergenic 60.0%
TCGAAGTCCGCCACCACGTA+AGG - tig0003589:46721-46740 None:intergenic 60.0%
!! TACGTGGTGGCGGACTTCGA+CGG + tig0003589:46721-46740 Msa1339930:CDS 60.0%
GAAGGAGGACCGTCAGGAAG+TGG - tig0003589:47198-47217 None:intergenic 60.0%
GCGGGAGATGTACGCTCAAC+CGG + tig0003589:47284-47303 Msa1339930:CDS 60.0%
CGGCGAGTCATTGGGTTCGT+TGG - tig0003589:47619-47638 None:intergenic 60.0%
TGACTCGCCGGAATGGAACC+AGG + tig0003589:47629-47648 Msa1339930:CDS 60.0%
!! CGATGCAACCGGTGCTACGT+TGG + tig0003589:47677-47696 Msa1339930:CDS 60.0%
GGCGCAGCAGAACAAAACGC+CGG + tig0003589:47825-47844 Msa1339930:CDS 60.0%
GAGCGAGTGTGTGCCACGTA+TGG - tig0003589:47936-47955 None:intergenic 60.0%
TCTACCACCGTTAACGGCGC+CGG + tig0003589:48034-48053 Msa1339930:CDS 60.0%
! GGCGCCGGAGATTAGAGTGA+AGG + tig0003589:48049-48068 Msa1339930:CDS 60.0%
GAGTAACGCCGCTTCCTTGG+TGG - tig0003589:48216-48235 None:intergenic 60.0%
ACCATTTGGCTGGCACGTGG+CGG - tig0003589:48286-48305 None:intergenic 60.0%
GGAACCATTTGGCTGGCACG+TGG - tig0003589:48289-48308 None:intergenic 60.0%
! GGACCCTTTTCCTGGACCCT+TGG - tig0003589:48501-48520 None:intergenic 60.0%
!! TCCACTTGGTGTGGCCCAAC+AGG + tig0003589:48916-48935 Msa1339930:CDS 60.0%
TCCTGTTGGGCCACACCAAG+TGG - tig0003589:48920-48939 None:intergenic 60.0%
!! ACTTGGTGTGGCCCAACAGG+AGG + tig0003589:48919-48938 Msa1339930:CDS 60.0%
GCCCAACAGGAGGCTTTACG+CGG + tig0003589:48929-48948 Msa1339930:CDS 60.0%
CCCGCGTAAAGCCTCCTGTT+GGG - tig0003589:48933-48952 None:intergenic 60.0%
CCCAACAGGAGGCTTTACGC+GGG + tig0003589:48930-48949 Msa1339930:CDS 60.0%
CCAACAGGAGGCTTTACGCG+GGG + tig0003589:48931-48950 Msa1339930:CDS 60.0%
CGAACAACCTCGTGCCCCAT+CGG - tig0003589:49001-49020 None:intergenic 60.0%
GCAAGAACAACCACCGCCGC+CGG + tig0003589:47083-47102 Msa1339930:CDS 65.0%
TTCCTCTCTTCCTCCGGCGG+CGG - tig0003589:47099-47118 None:intergenic 65.0%
TCCTCCTTCACCGCGAGTGG+TGG + tig0003589:47209-47228 Msa1339930:CDS 65.0%
ACCACCACTCGCGGTGAAGG+AGG - tig0003589:47213-47232 None:intergenic 65.0%
GCGTACATCTCCCGCAACGG+TGG - tig0003589:47279-47298 None:intergenic 65.0%
CTGCTGCGCCACCTTCGAGA+CGG - tig0003589:47815-47834 None:intergenic 65.0%
CGTGGCACACACTCGCTCCA+AGG + tig0003589:47938-47957 Msa1339930:CDS 65.0%
ATCTCCGGCGCCGTTAACGG+TGG - tig0003589:48041-48060 None:intergenic 65.0%
GCCGAGTAACGCCGCTTCCT+TGG - tig0003589:48219-48238 None:intergenic 65.0%
ACCGCCACGTGCCAGCCAAA+TGG + tig0003589:48282-48301 Msa1339930:CDS 65.0%
CGGATAGCTTCGACCCACGG+TGG + tig0003589:48579-48598 Msa1339930:CDS 65.0%
CCCCGCGTAAAGCCTCCTGT+TGG - tig0003589:48934-48953 None:intergenic 65.0%
ACGCGGGGCAGCCACTAAGA+TGG + tig0003589:48946-48965 Msa1339930:CDS 65.0%
GCTCGCTCAGAGCCTCCGAT+GGG + tig0003589:48983-49002 Msa1339930:CDS 65.0%
CTCGCTCAGAGCCTCCGATG+GGG + tig0003589:48984-49003 Msa1339930:CDS 65.0%
ACAACCTCGTGCCCCATCGG+AGG - tig0003589:48998-49017 None:intergenic 65.0%
GTCCGCCACCACGTAAGGGC+TGG - tig0003589:46716-46735 None:intergenic 70.0%
AGAACAACCACCGCCGCCGG+AGG + tig0003589:47086-47105 Msa1339930:CDS 70.0%
CGCGGTGAAGGAGGACCGTC+AGG - tig0003589:47204-47223 None:intergenic 70.0%
CGGTCCTCCTTCACCGCGAG+TGG + tig0003589:47206-47225 Msa1339930:CDS 70.0%
!! GCGGTTCGGTTCGCTTGCCC+CGG + tig0003589:48830-48849 Msa1339930:CDS 70.0%
!! CGGTTCGGTTCGCTTGCCCC+GGG + tig0003589:48831-48850 Msa1339930:CDS 70.0%
GGCTCGCTCAGAGCCTCCGA+TGG + tig0003589:48982-49001 Msa1339930:CDS 70.0%
AGAGCCTCCGATGGGGCACG+AGG + tig0003589:48991-49010 Msa1339930:CDS 70.0%
CTCTCTTCCTCCGGCGGCGG+TGG - tig0003589:47096-47115 None:intergenic 75.0%
CACCGCCGCCGGAGGAAGAG+AGG + tig0003589:47094-47113 Msa1339930:CDS 75.0%
Chromosome Type Strat End Strand Name
tig0003589 gene 46601 49687 46601 ID=Msa1339930;Name=Msa1339930
tig0003589 mRNA 46601 49687 46601 ID=Msa1339930-mRNA-1;Parent=Msa1339930;Name=Msa1339930-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|1028
tig0003589 exon 46601 49687 46601 ID=Msa1339930-mRNA-1:exon:2303;Parent=Msa1339930-mRNA-1
tig0003589 CDS 46601 49687 46601 ID=Msa1339930-mRNA-1:cds;Parent=Msa1339930-mRNA-1
Gene Sequence

>Msa1339930

ATGAACATGGCAACGACGCCGTTTCAACAAGGACCGCCCCAAACGGTGAGAAGATTGGCGGTGGAAGTTGTTGACGCACGCAACCTTCTTCCCAAAGATGGTCAAGGAAGTTCCAGCCCTTACGTGGTGGCGGACTTCGACGGTCAGAGAAAACGAACCACCACCCGGTTCAAAGAACTCAACCCGGTTTGGAACGAGTTGCTTGAGTTCATCGTTTCTGACCCGGAGAATATGGAGTTTGAAGAGCTTGAAGTTGAGGTTTATAATGATAAGAAATTTGGGAATGGTAGTGGTCGCAAGAATCATTTTCTTGGTAGGGTTAAGCTTTATGGAACACAGTTTTCTTGTAGAGGTGAAGAAGCTTTGGTTTATTATACTTTAGAGAAGAAAAGTGTTTTCAGTTGGATTAGAGGTGAAATCGGTTTGAAGATTTATTACTACGATGAGTTGTTACAGCAAGATGAACATCAGCAGCAGCAGCAGCAAGAACAACCACCGCCGCCGGAGGAAGAGAGGAACAATCACAGTCACAGGCATCCGATGATGGGTGAAGAGGGAAGAGTTTATCAGGTTGAACAGATGGAGCATTGTGTGCCACTTCCTGACGGTCCTCCTTCACCGCGAGTGGTGGTTTTGGAAGAATCACCTTCTCCGGTAGTTCGTGTTCAACAAGATCCACCGTTGCGGGAGATGTACGCTCAACCGGAACCGGAAATGCAGTATCATCATCATCATCCTGACGTGAGGAAAATGCAAACAATGAGGAATGATAGAGTGAAGATTATGAAGAGACCTAATGGTAACGGTAATGGTGATTACGCGCCGAAAGATATCTCCGGGAAGAAACCTAACGGTGAATCTGAGAGGATTCATCCCTATGATCTAGTTGAACCAATGCAGTATCTGTTTGTTAGAATCGTGAAGGTTCGCGGGCTTAATCCTCCAACTGAAAGCCCGTTCGTGAAGGTTAGAACCTCAAGTCACTACGTCAGATCAAAGCCCGCGAGTTATAGGCCCAACGAACCCAATGACTCGCCGGAATGGAACCAGGTTTTTGCCCTTGGTTACAGCAAAACCGATGCAACCGGTGCTACGTTGGAGATTTCCGTTTGGGATTCACCTACAGAGCAATTTCTAGGCGGTGTTTGCTTTGATCTTTCTGATGTACCTATTCGTGATTCTCCAGATAGTCCTCTTGCTCCACAATGGTACCGTCTCGAAGGTGGCGCAGCAGAACAAAACGCCGGTAGAGTCTCCGGCGACATACAACTTTCCGTTTGGATCGGAACTCAATCCGACGACGCTTTTCCAGAAGCATGGAGTTCAGATGCACCATACGTGGCACACACTCGCTCCAAGGTTTATCAATCACCGAAGCTTTGGTATCTGAGAGTAACAGTAATGGAAGCACAAGACCTGAATCTAACTCCGAATCTACCACCGTTAACGGCGCCGGAGATTAGAGTGAAGGTACAATTAGGGTTTCAATCACAGAGAACAAGAAGAGGCTCAATGAACCACCACAGCATGTCGTTTCACTGGCACGAAGATCTTCTCTTCGTCGCCGGTGAGCCACTAGAAGATTCCATGGTCCTTCTCGTAGAAGATCGCACCACCAAGGAAGCGGCGTTACTCGGCCACGTCGTCATTCCTCTGACGTCAATCGAACAGCGAATAGACGACCGCCACGTGCCAGCCAAATGGTTCCCGTTAGAAGGTGGGTCCTACTGTGGGAGAGTCCACCTACGCCTCTGTTTAGAAGGTGGTTATCACGTGCTTGATGAAGCGGCGCACGTGTGTAGTGATTTTCGTCCCACCGCGAAATCTCTATGGAAACCTCCAGTTGGAATTCTTGAACTTGGAATCTTAGGCGCTCGTGGTCTTCTTCCGATGAAATCCAAGGGTCCAGGAAAAGGGTCCACTGATTCTTACTGTGTGGCCAAGTATGGCAAAAAATGGGTCAGAACCCGAACCGTAACGGATAGCTTCGACCCACGGTGGAACGAACAGTACACATGGCAGGTATATGATCCTTGCACTGTCTTAACCGTAGGTGTATTTGACAACTGGCGTATGTTTGCTGATGTGGCAGAAGAAAAACCAGATTGCCGTATAGGTAAAATTCGTATACGAGTTTCTACACTAGAGAGCAATAAAATCTACACAAGTTCATATCCATTACTGGTTCTGACTCGAAACGGCTTGAAGAAAATGGGTGAAATCGAGTTAGCGGTTCGGTTCGCTTGCCCCGGGTTTTTTCCTGACACATGTGCGGTTTATCAACAACCATTACTTCCAAAAATGCACTACATTCGTCCACTTGGTGTGGCCCAACAGGAGGCTTTACGCGGGGCAGCCACTAAGATGGTAGCTCAGTGGCTGGCTCGCTCAGAGCCTCCGATGGGGCACGAGGTTGTTCGATACATGTTGGATGCTGACTCACATGCTTGGAGTATGAGGAAAAGTAAAGCCAATTGGTTTAGAATTGTGGCAGTGTTAGCTTGGGCTGTTGGATTAGCTAAGTGGTTAGATGATATAAGAAGATGGAAAAATCCAGTTACAACGGTTTTGCTTCATATACTTTACTTGGTCCTTGTTTGGTATCCAGATTTAATTGTTCCAACCGGGTTTTTATATGTTGTTTTGATTGGAATATGGTATTTCCGTTTTAGACCCAAGATACCAGCTGGTATGGATACAAGATTATCACAAGCTGAAGCTGTTGATCCAGATGAATTAGATGAAGAATTTGACACAATGCCTAGCTCCAAACCACCTGATTTGGTTCGGGTTCGTTATGACAGGTTAAGAATGTTGGCTGCAAGGGTGCAAACTGTTTTGGGTGATTTTGCAACACAAGGTGAGAGGGTTCAAGCATTGGTTAGTTGGAGAGACCCAAGAGCTACAAAATTGTTCATTGGAGTGTGTCTTGTTATTGCTATTATACTCTATTCAGTGCCTCCTAAAATGGTTGCTGTGGCTTTAGGATTCTACTATCTTCGTCATCCAATGTTTAGGAACCCAATGCCTCCGGCTAGTTTGAACTTTTTCAGAAGACTTCCTAGTTTGTCTGATAGGTTGATGTAG
Protein sequence

>Msa1339930

MNMATTPFQQGPPQTVRRLAVEVVDARNLLPKDGQGSSSPYVVADFDGQRKRTTTRFKELNPVWNELLEFIVSDPENMEFEELEVEVYNDKKFGNGSGRKNHFLGRVKLYGTQFSCRGEEALVYYTLEKKSVFSWIRGEIGLKIYYYDELLQQDEHQQQQQQEQPPPPEEERNNHSHRHPMMGEEGRVYQVEQMEHCVPLPDGPPSPRVVVLEESPSPVVRVQQDPPLREMYAQPEPEMQYHHHHPDVRKMQTMRNDRVKIMKRPNGNGNGDYAPKDISGKKPNGESERIHPYDLVEPMQYLFVRIVKVRGLNPPTESPFVKVRTSSHYVRSKPASYRPNEPNDSPEWNQVFALGYSKTDATGATLEISVWDSPTEQFLGGVCFDLSDVPIRDSPDSPLAPQWYRLEGGAAEQNAGRVSGDIQLSVWIGTQSDDAFPEAWSSDAPYVAHTRSKVYQSPKLWYLRVTVMEAQDLNLTPNLPPLTAPEIRVKVQLGFQSQRTRRGSMNHHSMSFHWHEDLLFVAGEPLEDSMVLLVEDRTTKEAALLGHVVIPLTSIEQRIDDRHVPAKWFPLEGGSYCGRVHLRLCLEGGYHVLDEAAHVCSDFRPTAKSLWKPPVGILELGILGARGLLPMKSKGPGKGSTDSYCVAKYGKKWVRTRTVTDSFDPRWNEQYTWQVYDPCTVLTVGVFDNWRMFADVAEEKPDCRIGKIRIRVSTLESNKIYTSSYPLLVLTRNGLKKMGEIELAVRFACPGFFPDTCAVYQQPLLPKMHYIRPLGVAQQEALRGAATKMVAQWLARSEPPMGHEVVRYMLDADSHAWSMRKSKANWFRIVAVLAWAVGLAKWLDDIRRWKNPVTTVLLHILYLVLVWYPDLIVPTGFLYVVLIGIWYFRFRPKIPAGMDTRLSQAEAVDPDELDEEFDTMPSSKPPDLVRVRYDRLRMLAARVQTVLGDFATQGERVQALVSWRDPRATKLFIGVCLVIAIILYSVPPKMVAVALGFYYLRHPMFRNPMPPASLNFFRRLPSLSDRLM*