AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0648080


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0648080 MtrunA17_Chr4g0039921 96.855 159 5 0 1 159 1 159 3.76e-110 310
Msa0648080 MtrunA17_Chr4g0039941 78.125 160 34 1 1 159 1 160 1.75e-86 250
Msa0648080 MtrunA17_Chr3g0100201 36.634 101 62 1 31 129 30 130 1.97e-14 66.6
Msa0648080 MtrunA17_Chr3g0100191 30.693 101 70 0 27 127 26 126 9.88e-12 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 72 sgRNAs with CRISPR-Local

Find 260 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCACCTTCTGAAATCTTTC+AGG 0.221004 4_3:-54505117 None:intergenic
ATGTTTATAGTTATATTATA+TGG 0.251963 4_3:-54504850 None:intergenic
CTCTTTGGCACTCTTGCTAT+TGG 0.264799 4_3:+54505072 Msa0648080:CDS
CCATCTTGTGGGTTACATTT+GGG 0.284338 4_3:-54504809 None:intergenic
GTAATATTACGAAACATAAA+TGG 0.286124 4_3:+54506537 Msa0648080:three_prime_UTR
TCCATCTTGTGGGTTACATT+TGG 0.298650 4_3:-54504810 None:intergenic
GGGTGTTATGTGTCAAGTTT+AGG 0.343468 4_3:+54504879 Msa0648080:five_prime_UTR
CTAGTTTCATTACATCTTGA+AGG 0.364837 4_3:-54506610 None:intergenic
AGATCCCATGCTTCACTTGC+TGG 0.373899 4_3:-54505051 None:intergenic
ACTAGTTCACCACACTTGAT+AGG 0.374795 4_3:-54506638 None:intergenic
GAAAATTTGTTCTTCAACCT+TGG 0.382969 4_3:-54506465 None:intergenic
CTACAACGTCTGCCAATTGC+TGG 0.406562 4_3:-54506222 None:intergenic
AAAGAGATCAAGAAGATGTT+TGG 0.416699 4_3:+54504997 Msa0648080:exon
TCAGGTTTACCTGGCCCAAC+TGG 0.416975 4_3:+54505992 Msa0648080:intron
TTGAAGGAGATGGAGGGGTT+GGG 0.418155 4_3:+54505145 Msa0648080:CDS
TCGGTTATCCTAGAATCATT+TGG 0.421799 4_3:-54506490 None:intergenic
ACTTGTTTCCATCCAGCAAT+TGG 0.424661 4_3:+54506210 Msa0648080:CDS
GGAAAGAGAAATTGCACAAA+GGG 0.426563 4_3:-54506666 None:intergenic
GATGGAAACAAGTGCGGCAT+TGG 0.436193 4_3:-54506200 None:intergenic
AGTGAAGCATGGGATCTCTT+TGG 0.449536 4_3:+54505057 Msa0648080:CDS
TTGCATCCTTGTTTCTGTTG+AGG 0.456610 4_3:-54506261 None:intergenic
ATTGAAGGAGATGGAGGGGT+TGG 0.457658 4_3:+54505144 Msa0648080:CDS
ATAATATAACTATAAACATC+TGG 0.459178 4_3:+54504854 Msa0648080:five_prime_UTR
AAAGAAGTGGAGGTGGTTGA+AGG 0.462385 4_3:+54506058 Msa0648080:CDS
TGTAATCATGTTAGTTATGG+TGG 0.480600 4_3:+54506582 Msa0648080:three_prime_UTR
TACACAAACTATTTGGGATG+TGG 0.481481 4_3:-54504974 None:intergenic
AAGAAGTGGAGGTGGTTGAA+GGG 0.482356 4_3:+54506059 Msa0648080:CDS
GGAGTTTGATCAGGTTTACC+TGG 0.484092 4_3:+54505983 Msa0648080:intron
TTTGCATGCCTCCATCTTGT+GGG 0.487297 4_3:-54504820 None:intergenic
TTGGCAGACGTTGTAGAAGT+TGG 0.487317 4_3:+54506229 Msa0648080:CDS
CACACTATTTAGAGTTCGTA+TGG 0.490157 4_3:+54506102 Msa0648080:CDS
TATAACTATAAACATCTGGC+AGG 0.492572 4_3:+54504858 Msa0648080:five_prime_UTR
CGTATGGAAGTGATAGAGAA+AGG 0.493358 4_3:+54506118 Msa0648080:CDS
AGGTTCGATAATCGATACTT+TGG 0.496223 4_3:-54506436 None:intergenic
CAGAAGGTGGAGCTAATTGA+AGG 0.500124 4_3:+54505129 Msa0648080:CDS
TTGTGTAATCATGTTAGTTA+TGG 0.504977 4_3:+54506579 Msa0648080:three_prime_UTR
AGAAGTGGAGGTGGTTGAAG+GGG 0.506956 4_3:+54506060 Msa0648080:CDS
TTCTTCAACCTTGGCGACCT+AGG 0.511757 4_3:-54506456 None:intergenic
GTGGAGCTAATTGAAGGAGA+TGG 0.515580 4_3:+54505135 Msa0648080:CDS
AGAGTATGAAGTCAAGGAAG+AGG 0.520181 4_3:+54506171 Msa0648080:CDS
GAATTAATGAAACAAAATGT+TGG 0.523562 4_3:-54506385 None:intergenic
CTCAAACTCACATTCACTCC+AGG 0.525858 4_3:+54505174 Msa0648080:CDS
TGAAGTCAAGGAAGAGGAAG+CGG 0.526015 4_3:+54506177 Msa0648080:CDS
TGGCACTCTTGCTATTGGAA+AGG 0.531710 4_3:+54505077 Msa0648080:CDS
TACATTAGAGTATGAAGTCA+AGG 0.533592 4_3:+54506165 Msa0648080:CDS
GAGCTAATTGAAGGAGATGG+AGG 0.540375 4_3:+54505138 Msa0648080:CDS
GAAGTGGAGGTGGTTGAAGG+GGG 0.553306 4_3:+54506061 Msa0648080:CDS
CGTGCCAGCAAGTGAAGCAT+GGG 0.555967 4_3:+54505047 Msa0648080:CDS
CCCAAATGTAACCCACAAGA+TGG 0.560304 4_3:+54504809 Msa0648080:five_prime_UTR
TGAAAAGCACATCAAAGAAG+TGG 0.563701 4_3:+54506045 Msa0648080:CDS
ACGTGCCAGCAAGTGAAGCA+TGG 0.570168 4_3:+54505046 Msa0648080:CDS
TATACTTCACATCAAAATTG+TGG 0.571099 4_3:+54504911 Msa0648080:five_prime_UTR
AACGTCTGCCAATTGCTGGA+TGG 0.574607 4_3:-54506218 None:intergenic
GCACATCAAAGAAGTGGAGG+TGG 0.578278 4_3:+54506051 Msa0648080:CDS
AGCTAATTGAAGGAGATGGA+GGG 0.580245 4_3:+54505139 Msa0648080:CDS
TATTTGGGATGTGGTGTATG+TGG 0.581504 4_3:-54504965 None:intergenic
GCTAATTGAAGGAGATGGAG+GGG 0.586950 4_3:+54505140 Msa0648080:CDS
GCCTGAAAGATTTCAGAAGG+TGG 0.605828 4_3:+54505116 Msa0648080:CDS
ATGGCAGAAGTATACTCTCA+AGG 0.607696 4_3:+54506556 Msa0648080:three_prime_UTR
TGCTATTGGAAAGGTCGTTG+AGG 0.616559 4_3:+54505086 Msa0648080:CDS
ATAACTATAAACATCTGGCA+GGG 0.617981 4_3:+54504859 Msa0648080:five_prime_UTR
GATGCCTGAAAGATTTCAGA+AGG 0.633462 4_3:+54505113 Msa0648080:CDS
ATTTGAGAAATAGTACATGT+CGG 0.639477 4_3:-54506509 None:intergenic
GGGAAAGAGAAATTGCACAA+AGG 0.643581 4_3:-54506667 None:intergenic
GATGTGGTGTATGTGGTGCG+TGG 0.649817 4_3:-54504958 None:intergenic
AAAGCACATCAAAGAAGTGG+AGG 0.653324 4_3:+54506048 Msa0648080:CDS
TTATCGAACCTAGGTCGCCA+AGG 0.654190 4_3:+54506448 Msa0648080:three_prime_UTR
AAATGTAACCCACAAGATGG+AGG 0.674240 4_3:+54504812 Msa0648080:five_prime_UTR
AAGTATCGATTATCGAACCT+AGG 0.675431 4_3:+54506439 Msa0648080:three_prime_UTR
TTGCTGGATGGAAACAAGTG+CGG 0.676967 4_3:-54506206 None:intergenic
GAATTACCTCAACAGAAACA+AGG 0.697908 4_3:+54506255 Msa0648080:CDS
CTAGACGTACCTATCAAGTG+TGG 0.700739 4_3:+54506629 Msa0648080:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGTTTATAGTTATATTATA+TGG - chr4_3:54504853-54504872 None:intergenic 10.0%
!! ATGTTTATAGTTATATTATA+TGG - chr4_3:54504853-54504872 None:intergenic 10.0%
!! ATAATATAACTATAAACATC+TGG + chr4_3:54504854-54504873 Msa0648080:five_prime_UTR 15.0%
!! AAATAATAATGAAAATAACC+TGG - chr4_3:54505195-54505214 None:intergenic 15.0%
!!! TATATTTTTGAGTATAATTG+TGG - chr4_3:54505240-54505259 None:intergenic 15.0%
!! ATTATTTACACTTGAATAAA+AGG - chr4_3:54505661-54505680 None:intergenic 15.0%
!!! TTTTATTCAAGTGTAAATAA+TGG + chr4_3:54505660-54505679 Msa0648080:intron 15.0%
!!! TAACATAACATTAATTGTTT+TGG + chr4_3:54505958-54505977 Msa0648080:intron 15.0%
!!! AATAGTTTTCTTAAAAAAGA+TGG - chr4_3:54506703-54506722 None:intergenic 15.0%
!! ATAATATAACTATAAACATC+TGG + chr4_3:54504854-54504873 Msa0648080:five_prime_UTR 15.0%
!! AAATAATAATGAAAATAACC+TGG - chr4_3:54505195-54505214 None:intergenic 15.0%
!!! TATATTTTTGAGTATAATTG+TGG - chr4_3:54505240-54505259 None:intergenic 15.0%
!! ATTATTTACACTTGAATAAA+AGG - chr4_3:54505661-54505680 None:intergenic 15.0%
!!! TTTTATTCAAGTGTAAATAA+TGG + chr4_3:54505660-54505679 Msa0648080:intron 15.0%
!!! TAACATAACATTAATTGTTT+TGG + chr4_3:54505958-54505977 Msa0648080:intron 15.0%
!!! AATAGTTTTCTTAAAAAAGA+TGG - chr4_3:54506703-54506722 None:intergenic 15.0%
!! TTATCGTTACATAATTCATA+TGG + chr4_3:54505261-54505280 Msa0648080:intron 20.0%
!! AATTAAATAGAAAGTAGTCT+CGG - chr4_3:54505475-54505494 None:intergenic 20.0%
!! ATGATGAATTAACATACTTA+CGG + chr4_3:54505859-54505878 Msa0648080:intron 20.0%
!!! ATAACATTAATTGTTTTGGT+CGG + chr4_3:54505962-54505981 Msa0648080:intron 20.0%
!! TTAGAGAAAAGAAAAACTTA+TGG + chr4_3:54506324-54506343 Msa0648080:three_prime_UTR 20.0%
!! GAATTAATGAAACAAAATGT+TGG - chr4_3:54506388-54506407 None:intergenic 20.0%
!! GTAATATTACGAAACATAAA+TGG + chr4_3:54506537-54506556 Msa0648080:three_prime_UTR 20.0%
!! AAAAAGATGGAAAGAATTTA+GGG - chr4_3:54506690-54506709 None:intergenic 20.0%
!! AAAAAAGATGGAAAGAATTT+AGG - chr4_3:54506691-54506710 None:intergenic 20.0%
!! TTATCGTTACATAATTCATA+TGG + chr4_3:54505261-54505280 Msa0648080:intron 20.0%
!! AATTAAATAGAAAGTAGTCT+CGG - chr4_3:54505475-54505494 None:intergenic 20.0%
!! ATGATGAATTAACATACTTA+CGG + chr4_3:54505859-54505878 Msa0648080:intron 20.0%
!!! ATAACATTAATTGTTTTGGT+CGG + chr4_3:54505962-54505981 Msa0648080:intron 20.0%
!! TTAGAGAAAAGAAAAACTTA+TGG + chr4_3:54506324-54506343 Msa0648080:three_prime_UTR 20.0%
!! GAATTAATGAAACAAAATGT+TGG - chr4_3:54506388-54506407 None:intergenic 20.0%
!! GTAATATTACGAAACATAAA+TGG + chr4_3:54506537-54506556 Msa0648080:three_prime_UTR 20.0%
!! AAAAAGATGGAAAGAATTTA+GGG - chr4_3:54506690-54506709 None:intergenic 20.0%
!! AAAAAAGATGGAAAGAATTT+AGG - chr4_3:54506691-54506710 None:intergenic 20.0%
! TATACTTCACATCAAAATTG+TGG + chr4_3:54504911-54504930 Msa0648080:five_prime_UTR 25.0%
!! CTCTTTTACACAAACTATTT+GGG - chr4_3:54504983-54505002 None:intergenic 25.0%
!! TCTCTTTTACACAAACTATT+TGG - chr4_3:54504984-54505003 None:intergenic 25.0%
!! CTATTGTATCATGAACATTT+TGG + chr4_3:54505512-54505531 Msa0648080:intron 25.0%
! AATCTATAGATTCATGAGTT+TGG + chr4_3:54505816-54505835 Msa0648080:intron 25.0%
! TGATGAATTAACATACTTAC+GGG + chr4_3:54505860-54505879 Msa0648080:intron 25.0%
!! ACTTTTCTTTTAAACCAGTT+GGG - chr4_3:54506009-54506028 None:intergenic 25.0%
!! AACTTTTCTTTTAAACCAGT+TGG - chr4_3:54506010-54506029 None:intergenic 25.0%
!! CATCATCATGTATTTTCTTT+TGG + chr4_3:54506409-54506428 Msa0648080:three_prime_UTR 25.0%
!! ATTTTCAACCAAATGATTCT+AGG + chr4_3:54506482-54506501 Msa0648080:three_prime_UTR 25.0%
! ATTTGAGAAATAGTACATGT+CGG - chr4_3:54506512-54506531 None:intergenic 25.0%
! TTGTGTAATCATGTTAGTTA+TGG + chr4_3:54506579-54506598 Msa0648080:three_prime_UTR 25.0%
! TATACTTCACATCAAAATTG+TGG + chr4_3:54504911-54504930 Msa0648080:five_prime_UTR 25.0%
!! CTCTTTTACACAAACTATTT+GGG - chr4_3:54504983-54505002 None:intergenic 25.0%
!! TCTCTTTTACACAAACTATT+TGG - chr4_3:54504984-54505003 None:intergenic 25.0%
!! CTATTGTATCATGAACATTT+TGG + chr4_3:54505512-54505531 Msa0648080:intron 25.0%
! AATCTATAGATTCATGAGTT+TGG + chr4_3:54505816-54505835 Msa0648080:intron 25.0%
! TGATGAATTAACATACTTAC+GGG + chr4_3:54505860-54505879 Msa0648080:intron 25.0%
!! ACTTTTCTTTTAAACCAGTT+GGG - chr4_3:54506009-54506028 None:intergenic 25.0%
!! AACTTTTCTTTTAAACCAGT+TGG - chr4_3:54506010-54506029 None:intergenic 25.0%
!! CATCATCATGTATTTTCTTT+TGG + chr4_3:54506409-54506428 Msa0648080:three_prime_UTR 25.0%
!! ATTTTCAACCAAATGATTCT+AGG + chr4_3:54506482-54506501 Msa0648080:three_prime_UTR 25.0%
! ATTTGAGAAATAGTACATGT+CGG - chr4_3:54506512-54506531 None:intergenic 25.0%
! TTGTGTAATCATGTTAGTTA+TGG + chr4_3:54506579-54506598 Msa0648080:three_prime_UTR 25.0%
TATAACTATAAACATCTGGC+AGG + chr4_3:54504858-54504877 Msa0648080:five_prime_UTR 30.0%
ATAACTATAAACATCTGGCA+GGG + chr4_3:54504859-54504878 Msa0648080:five_prime_UTR 30.0%
AAAGAGATCAAGAAGATGTT+TGG + chr4_3:54504997-54505016 Msa0648080:exon 30.0%
TTCATCTTAAGCTGAATAAG+TGG + chr4_3:54505382-54505401 Msa0648080:intron 30.0%
ACATTTGATATGTAAGGATC+AGG - chr4_3:54505424-54505443 None:intergenic 30.0%
GACATCACATTTGATATGTA+AGG - chr4_3:54505430-54505449 None:intergenic 30.0%
ATAACAATGTCATGTCTCTT+AGG + chr4_3:54505560-54505579 Msa0648080:intron 30.0%
!! ATTGATTTTGCCATCCAAAA+AGG + chr4_3:54505607-54505626 Msa0648080:intron 30.0%
! GTGCTTTTCATTATCAATCT+TGG - chr4_3:54506035-54506054 None:intergenic 30.0%
TACATTAGAGTATGAAGTCA+AGG + chr4_3:54506165-54506184 Msa0648080:CDS 30.0%
! GAAAATTTGTTCTTCAACCT+TGG - chr4_3:54506468-54506487 None:intergenic 30.0%
TGTAATCATGTTAGTTATGG+TGG + chr4_3:54506582-54506601 Msa0648080:three_prime_UTR 30.0%
CTAGTTTCATTACATCTTGA+AGG - chr4_3:54506613-54506632 None:intergenic 30.0%
TATAACTATAAACATCTGGC+AGG + chr4_3:54504858-54504877 Msa0648080:five_prime_UTR 30.0%
ATAACTATAAACATCTGGCA+GGG + chr4_3:54504859-54504878 Msa0648080:five_prime_UTR 30.0%
AAAGAGATCAAGAAGATGTT+TGG + chr4_3:54504997-54505016 Msa0648080:exon 30.0%
TTCATCTTAAGCTGAATAAG+TGG + chr4_3:54505382-54505401 Msa0648080:intron 30.0%
ACATTTGATATGTAAGGATC+AGG - chr4_3:54505424-54505443 None:intergenic 30.0%
GACATCACATTTGATATGTA+AGG - chr4_3:54505430-54505449 None:intergenic 30.0%
ATAACAATGTCATGTCTCTT+AGG + chr4_3:54505560-54505579 Msa0648080:intron 30.0%
!! ATTGATTTTGCCATCCAAAA+AGG + chr4_3:54505607-54505626 Msa0648080:intron 30.0%
! GTGCTTTTCATTATCAATCT+TGG - chr4_3:54506035-54506054 None:intergenic 30.0%
TACATTAGAGTATGAAGTCA+AGG + chr4_3:54506165-54506184 Msa0648080:CDS 30.0%
! GAAAATTTGTTCTTCAACCT+TGG - chr4_3:54506468-54506487 None:intergenic 30.0%
TGTAATCATGTTAGTTATGG+TGG + chr4_3:54506582-54506601 Msa0648080:three_prime_UTR 30.0%
CTAGTTTCATTACATCTTGA+AGG - chr4_3:54506613-54506632 None:intergenic 30.0%
! TACACAAACTATTTGGGATG+TGG - chr4_3:54504977-54504996 None:intergenic 35.0%
GAGGATGTGTTTACAATTGA+TGG - chr4_3:54505308-54505327 None:intergenic 35.0%
AAATGTGATGTCCCTAACAA+TGG + chr4_3:54505438-54505457 Msa0648080:intron 35.0%
ACACTTGAATAAAAGGCAAG+CGG - chr4_3:54505654-54505673 None:intergenic 35.0%
CATTATGTCTATGTACAGGT+GGG + chr4_3:54505775-54505794 Msa0648080:intron 35.0%
ATTATGTCTATGTACAGGTG+GGG + chr4_3:54505776-54505795 Msa0648080:intron 35.0%
! TGAAAAGCACATCAAAGAAG+TGG + chr4_3:54506045-54506064 Msa0648080:CDS 35.0%
! CACACTATTTAGAGTTCGTA+TGG + chr4_3:54506102-54506121 Msa0648080:CDS 35.0%
GAATTACCTCAACAGAAACA+AGG + chr4_3:54506255-54506274 Msa0648080:CDS 35.0%
AGGTTCGATAATCGATACTT+TGG - chr4_3:54506439-54506458 None:intergenic 35.0%
!! AAGTATCGATTATCGAACCT+AGG + chr4_3:54506439-54506458 Msa0648080:three_prime_UTR 35.0%
TCGGTTATCCTAGAATCATT+TGG - chr4_3:54506493-54506512 None:intergenic 35.0%
GGAAAGAGAAATTGCACAAA+GGG - chr4_3:54506669-54506688 None:intergenic 35.0%
! TACACAAACTATTTGGGATG+TGG - chr4_3:54504977-54504996 None:intergenic 35.0%
GAGGATGTGTTTACAATTGA+TGG - chr4_3:54505308-54505327 None:intergenic 35.0%
AAATGTGATGTCCCTAACAA+TGG + chr4_3:54505438-54505457 Msa0648080:intron 35.0%
ACACTTGAATAAAAGGCAAG+CGG - chr4_3:54505654-54505673 None:intergenic 35.0%
CATTATGTCTATGTACAGGT+GGG + chr4_3:54505775-54505794 Msa0648080:intron 35.0%
ATTATGTCTATGTACAGGTG+GGG + chr4_3:54505776-54505795 Msa0648080:intron 35.0%
! TGAAAAGCACATCAAAGAAG+TGG + chr4_3:54506045-54506064 Msa0648080:CDS 35.0%
! CACACTATTTAGAGTTCGTA+TGG + chr4_3:54506102-54506121 Msa0648080:CDS 35.0%
GAATTACCTCAACAGAAACA+AGG + chr4_3:54506255-54506274 Msa0648080:CDS 35.0%
AGGTTCGATAATCGATACTT+TGG - chr4_3:54506439-54506458 None:intergenic 35.0%
!! AAGTATCGATTATCGAACCT+AGG + chr4_3:54506439-54506458 Msa0648080:three_prime_UTR 35.0%
TCGGTTATCCTAGAATCATT+TGG - chr4_3:54506493-54506512 None:intergenic 35.0%
GGAAAGAGAAATTGCACAAA+GGG - chr4_3:54506669-54506688 None:intergenic 35.0%
! CCATCTTGTGGGTTACATTT+GGG - chr4_3:54504812-54504831 None:intergenic 40.0%
! TCCATCTTGTGGGTTACATT+TGG - chr4_3:54504813-54504832 None:intergenic 40.0%
AAATGTAACCCACAAGATGG+AGG + chr4_3:54504812-54504831 Msa0648080:five_prime_UTR 40.0%
! GGGTGTTATGTGTCAAGTTT+AGG + chr4_3:54504879-54504898 Msa0648080:five_prime_UTR 40.0%
! TATTTGGGATGTGGTGTATG+TGG - chr4_3:54504968-54504987 None:intergenic 40.0%
GATGCCTGAAAGATTTCAGA+AGG + chr4_3:54505113-54505132 Msa0648080:CDS 40.0%
!! TCCACCTTCTGAAATCTTTC+AGG - chr4_3:54505120-54505139 None:intergenic 40.0%
AGCTAATTGAAGGAGATGGA+GGG + chr4_3:54505139-54505158 Msa0648080:CDS 40.0%
TAACCACCTTATTCTCCACT+AGG - chr4_3:54505345-54505364 None:intergenic 40.0%
AATAGAAAGTAGTCTCGGCA+AGG - chr4_3:54505470-54505489 None:intergenic 40.0%
CATCGTGAACACAACATTCA+TGG - chr4_3:54505587-54505606 None:intergenic 40.0%
CACTTGAATAAAAGGCAAGC+GGG - chr4_3:54505653-54505672 None:intergenic 40.0%
CCTGTACATAGACATAATGG+TGG - chr4_3:54505774-54505793 None:intergenic 40.0%
CCACCATTATGTCTATGTAC+AGG + chr4_3:54505771-54505790 Msa0648080:intron 40.0%
CCACCTGTACATAGACATAA+TGG - chr4_3:54505777-54505796 None:intergenic 40.0%
CCATTATGTCTATGTACAGG+TGG + chr4_3:54505774-54505793 Msa0648080:intron 40.0%
TTATGTCTATGTACAGGTGG+GGG + chr4_3:54505777-54505796 Msa0648080:intron 40.0%
AAAGCACATCAAAGAAGTGG+AGG + chr4_3:54506048-54506067 Msa0648080:CDS 40.0%
CGTATGGAAGTGATAGAGAA+AGG + chr4_3:54506118-54506137 Msa0648080:CDS 40.0%
AGAGTATGAAGTCAAGGAAG+AGG + chr4_3:54506171-54506190 Msa0648080:CDS 40.0%
ACTTGTTTCCATCCAGCAAT+TGG + chr4_3:54506210-54506229 Msa0648080:CDS 40.0%
!! TTGCATCCTTGTTTCTGTTG+AGG - chr4_3:54506264-54506283 None:intergenic 40.0%
! ATGGCAGAAGTATACTCTCA+AGG + chr4_3:54506556-54506575 Msa0648080:three_prime_UTR 40.0%
ACTAGTTCACCACACTTGAT+AGG - chr4_3:54506641-54506660 None:intergenic 40.0%
GGGAAAGAGAAATTGCACAA+AGG - chr4_3:54506670-54506689 None:intergenic 40.0%
! CCATCTTGTGGGTTACATTT+GGG - chr4_3:54504812-54504831 None:intergenic 40.0%
! TCCATCTTGTGGGTTACATT+TGG - chr4_3:54504813-54504832 None:intergenic 40.0%
AAATGTAACCCACAAGATGG+AGG + chr4_3:54504812-54504831 Msa0648080:five_prime_UTR 40.0%
! GGGTGTTATGTGTCAAGTTT+AGG + chr4_3:54504879-54504898 Msa0648080:five_prime_UTR 40.0%
! TATTTGGGATGTGGTGTATG+TGG - chr4_3:54504968-54504987 None:intergenic 40.0%
GATGCCTGAAAGATTTCAGA+AGG + chr4_3:54505113-54505132 Msa0648080:CDS 40.0%
!! TCCACCTTCTGAAATCTTTC+AGG - chr4_3:54505120-54505139 None:intergenic 40.0%
AGCTAATTGAAGGAGATGGA+GGG + chr4_3:54505139-54505158 Msa0648080:CDS 40.0%
TAACCACCTTATTCTCCACT+AGG - chr4_3:54505345-54505364 None:intergenic 40.0%
AATAGAAAGTAGTCTCGGCA+AGG - chr4_3:54505470-54505489 None:intergenic 40.0%
CATCGTGAACACAACATTCA+TGG - chr4_3:54505587-54505606 None:intergenic 40.0%
CACTTGAATAAAAGGCAAGC+GGG - chr4_3:54505653-54505672 None:intergenic 40.0%
CCTGTACATAGACATAATGG+TGG - chr4_3:54505774-54505793 None:intergenic 40.0%
CCACCATTATGTCTATGTAC+AGG + chr4_3:54505771-54505790 Msa0648080:intron 40.0%
CCACCTGTACATAGACATAA+TGG - chr4_3:54505777-54505796 None:intergenic 40.0%
CCATTATGTCTATGTACAGG+TGG + chr4_3:54505774-54505793 Msa0648080:intron 40.0%
TTATGTCTATGTACAGGTGG+GGG + chr4_3:54505777-54505796 Msa0648080:intron 40.0%
AAAGCACATCAAAGAAGTGG+AGG + chr4_3:54506048-54506067 Msa0648080:CDS 40.0%
CGTATGGAAGTGATAGAGAA+AGG + chr4_3:54506118-54506137 Msa0648080:CDS 40.0%
AGAGTATGAAGTCAAGGAAG+AGG + chr4_3:54506171-54506190 Msa0648080:CDS 40.0%
ACTTGTTTCCATCCAGCAAT+TGG + chr4_3:54506210-54506229 Msa0648080:CDS 40.0%
!! TTGCATCCTTGTTTCTGTTG+AGG - chr4_3:54506264-54506283 None:intergenic 40.0%
! ATGGCAGAAGTATACTCTCA+AGG + chr4_3:54506556-54506575 Msa0648080:three_prime_UTR 40.0%
ACTAGTTCACCACACTTGAT+AGG - chr4_3:54506641-54506660 None:intergenic 40.0%
GGGAAAGAGAAATTGCACAA+AGG - chr4_3:54506670-54506689 None:intergenic 40.0%
CCCAAATGTAACCCACAAGA+TGG + chr4_3:54504809-54504828 Msa0648080:five_prime_UTR 45.0%
TTTGCATGCCTCCATCTTGT+GGG - chr4_3:54504823-54504842 None:intergenic 45.0%
! TTTTGCATGCCTCCATCTTG+TGG - chr4_3:54504824-54504843 None:intergenic 45.0%
AGTGAAGCATGGGATCTCTT+TGG + chr4_3:54505057-54505076 Msa0648080:CDS 45.0%
! CTCTTTGGCACTCTTGCTAT+TGG + chr4_3:54505072-54505091 Msa0648080:CDS 45.0%
!! TGGCACTCTTGCTATTGGAA+AGG + chr4_3:54505077-54505096 Msa0648080:CDS 45.0%
TGCTATTGGAAAGGTCGTTG+AGG + chr4_3:54505086-54505105 Msa0648080:CDS 45.0%
GCCTGAAAGATTTCAGAAGG+TGG + chr4_3:54505116-54505135 Msa0648080:CDS 45.0%
CAGAAGGTGGAGCTAATTGA+AGG + chr4_3:54505129-54505148 Msa0648080:CDS 45.0%
GTGGAGCTAATTGAAGGAGA+TGG + chr4_3:54505135-54505154 Msa0648080:CDS 45.0%
GAGCTAATTGAAGGAGATGG+AGG + chr4_3:54505138-54505157 Msa0648080:CDS 45.0%
GCTAATTGAAGGAGATGGAG+GGG + chr4_3:54505140-54505159 Msa0648080:CDS 45.0%
CTCAAACTCACATTCACTCC+AGG + chr4_3:54505174-54505193 Msa0648080:CDS 45.0%
TGTAAACACATCCTCCGTTG+AGG + chr4_3:54505313-54505332 Msa0648080:intron 45.0%
CGTTGACCTAGTGGAGAATA+AGG + chr4_3:54505336-54505355 Msa0648080:intron 45.0%
TGACCTAGTGGAGAATAAGG+TGG + chr4_3:54505339-54505358 Msa0648080:intron 45.0%
CAAGGATCGCTCCATTGTTA+GGG - chr4_3:54505452-54505471 None:intergenic 45.0%
TGCCATCCAAAAAGGTCTAG+CGG + chr4_3:54505615-54505634 Msa0648080:intron 45.0%
!! GTTTTGGTCGGAGTTTGATC+AGG + chr4_3:54505974-54505993 Msa0648080:intron 45.0%
GGAGTTTGATCAGGTTTACC+TGG + chr4_3:54505983-54506002 Msa0648080:intron 45.0%
! TCTTTTAAACCAGTTGGGCC+AGG - chr4_3:54506004-54506023 None:intergenic 45.0%
AAAGAAGTGGAGGTGGTTGA+AGG + chr4_3:54506058-54506077 Msa0648080:CDS 45.0%
AAGAAGTGGAGGTGGTTGAA+GGG + chr4_3:54506059-54506078 Msa0648080:CDS 45.0%
TGAAGTCAAGGAAGAGGAAG+CGG + chr4_3:54506177-54506196 Msa0648080:CDS 45.0%
TTGCTGGATGGAAACAAGTG+CGG - chr4_3:54506209-54506228 None:intergenic 45.0%
TTGGCAGACGTTGTAGAAGT+TGG + chr4_3:54506229-54506248 Msa0648080:CDS 45.0%
CTAGACGTACCTATCAAGTG+TGG + chr4_3:54506629-54506648 Msa0648080:three_prime_UTR 45.0%
CCCAAATGTAACCCACAAGA+TGG + chr4_3:54504809-54504828 Msa0648080:five_prime_UTR 45.0%
TTTGCATGCCTCCATCTTGT+GGG - chr4_3:54504823-54504842 None:intergenic 45.0%
! TTTTGCATGCCTCCATCTTG+TGG - chr4_3:54504824-54504843 None:intergenic 45.0%
AGTGAAGCATGGGATCTCTT+TGG + chr4_3:54505057-54505076 Msa0648080:CDS 45.0%
! CTCTTTGGCACTCTTGCTAT+TGG + chr4_3:54505072-54505091 Msa0648080:CDS 45.0%
!! TGGCACTCTTGCTATTGGAA+AGG + chr4_3:54505077-54505096 Msa0648080:CDS 45.0%
TGCTATTGGAAAGGTCGTTG+AGG + chr4_3:54505086-54505105 Msa0648080:CDS 45.0%
GCCTGAAAGATTTCAGAAGG+TGG + chr4_3:54505116-54505135 Msa0648080:CDS 45.0%
CAGAAGGTGGAGCTAATTGA+AGG + chr4_3:54505129-54505148 Msa0648080:CDS 45.0%
GTGGAGCTAATTGAAGGAGA+TGG + chr4_3:54505135-54505154 Msa0648080:CDS 45.0%
GAGCTAATTGAAGGAGATGG+AGG + chr4_3:54505138-54505157 Msa0648080:CDS 45.0%
GCTAATTGAAGGAGATGGAG+GGG + chr4_3:54505140-54505159 Msa0648080:CDS 45.0%
CTCAAACTCACATTCACTCC+AGG + chr4_3:54505174-54505193 Msa0648080:CDS 45.0%
TGTAAACACATCCTCCGTTG+AGG + chr4_3:54505313-54505332 Msa0648080:intron 45.0%
CGTTGACCTAGTGGAGAATA+AGG + chr4_3:54505336-54505355 Msa0648080:intron 45.0%
TGACCTAGTGGAGAATAAGG+TGG + chr4_3:54505339-54505358 Msa0648080:intron 45.0%
CAAGGATCGCTCCATTGTTA+GGG - chr4_3:54505452-54505471 None:intergenic 45.0%
TGCCATCCAAAAAGGTCTAG+CGG + chr4_3:54505615-54505634 Msa0648080:intron 45.0%
!! GTTTTGGTCGGAGTTTGATC+AGG + chr4_3:54505974-54505993 Msa0648080:intron 45.0%
GGAGTTTGATCAGGTTTACC+TGG + chr4_3:54505983-54506002 Msa0648080:intron 45.0%
! TCTTTTAAACCAGTTGGGCC+AGG - chr4_3:54506004-54506023 None:intergenic 45.0%
AAAGAAGTGGAGGTGGTTGA+AGG + chr4_3:54506058-54506077 Msa0648080:CDS 45.0%
AAGAAGTGGAGGTGGTTGAA+GGG + chr4_3:54506059-54506078 Msa0648080:CDS 45.0%
TGAAGTCAAGGAAGAGGAAG+CGG + chr4_3:54506177-54506196 Msa0648080:CDS 45.0%
TTGCTGGATGGAAACAAGTG+CGG - chr4_3:54506209-54506228 None:intergenic 45.0%
TTGGCAGACGTTGTAGAAGT+TGG + chr4_3:54506229-54506248 Msa0648080:CDS 45.0%
CTAGACGTACCTATCAAGTG+TGG + chr4_3:54506629-54506648 Msa0648080:three_prime_UTR 45.0%
AGATCCCATGCTTCACTTGC+TGG - chr4_3:54505054-54505073 None:intergenic 50.0%
ATTGAAGGAGATGGAGGGGT+TGG + chr4_3:54505144-54505163 Msa0648080:CDS 50.0%
TTGAAGGAGATGGAGGGGTT+GGG + chr4_3:54505145-54505164 Msa0648080:CDS 50.0%
GCAAGGATCGCTCCATTGTT+AGG - chr4_3:54505453-54505472 None:intergenic 50.0%
CTATGTACAGGTGGGGGATT+CGG + chr4_3:54505783-54505802 Msa0648080:intron 50.0%
GCACATCAAAGAAGTGGAGG+TGG + chr4_3:54506051-54506070 Msa0648080:CDS 50.0%
AGAAGTGGAGGTGGTTGAAG+GGG + chr4_3:54506060-54506079 Msa0648080:CDS 50.0%
GAAGGGGGATGCTTAGATCT+TGG + chr4_3:54506076-54506095 Msa0648080:CDS 50.0%
GATGGAAACAAGTGCGGCAT+TGG - chr4_3:54506203-54506222 None:intergenic 50.0%
AACGTCTGCCAATTGCTGGA+TGG - chr4_3:54506221-54506240 None:intergenic 50.0%
CTACAACGTCTGCCAATTGC+TGG - chr4_3:54506225-54506244 None:intergenic 50.0%
TTATCGAACCTAGGTCGCCA+AGG + chr4_3:54506448-54506467 Msa0648080:three_prime_UTR 50.0%
TTCTTCAACCTTGGCGACCT+AGG - chr4_3:54506459-54506478 None:intergenic 50.0%
AGATCCCATGCTTCACTTGC+TGG - chr4_3:54505054-54505073 None:intergenic 50.0%
ATTGAAGGAGATGGAGGGGT+TGG + chr4_3:54505144-54505163 Msa0648080:CDS 50.0%
TTGAAGGAGATGGAGGGGTT+GGG + chr4_3:54505145-54505164 Msa0648080:CDS 50.0%
GCAAGGATCGCTCCATTGTT+AGG - chr4_3:54505453-54505472 None:intergenic 50.0%
CTATGTACAGGTGGGGGATT+CGG + chr4_3:54505783-54505802 Msa0648080:intron 50.0%
GCACATCAAAGAAGTGGAGG+TGG + chr4_3:54506051-54506070 Msa0648080:CDS 50.0%
AGAAGTGGAGGTGGTTGAAG+GGG + chr4_3:54506060-54506079 Msa0648080:CDS 50.0%
GAAGGGGGATGCTTAGATCT+TGG + chr4_3:54506076-54506095 Msa0648080:CDS 50.0%
GATGGAAACAAGTGCGGCAT+TGG - chr4_3:54506203-54506222 None:intergenic 50.0%
AACGTCTGCCAATTGCTGGA+TGG - chr4_3:54506221-54506240 None:intergenic 50.0%
CTACAACGTCTGCCAATTGC+TGG - chr4_3:54506225-54506244 None:intergenic 50.0%
TTATCGAACCTAGGTCGCCA+AGG + chr4_3:54506448-54506467 Msa0648080:three_prime_UTR 50.0%
TTCTTCAACCTTGGCGACCT+AGG - chr4_3:54506459-54506478 None:intergenic 50.0%
GATGTGGTGTATGTGGTGCG+TGG - chr4_3:54504961-54504980 None:intergenic 55.0%
ACGTGCCAGCAAGTGAAGCA+TGG + chr4_3:54505046-54505065 Msa0648080:CDS 55.0%
CGTGCCAGCAAGTGAAGCAT+GGG + chr4_3:54505047-54505066 Msa0648080:CDS 55.0%
CCACTAGGTCAACGCCTCAA+CGG - chr4_3:54505330-54505349 None:intergenic 55.0%
! CGCCGCTAGACCTTTTTGGA+TGG - chr4_3:54505620-54505639 None:intergenic 55.0%
TCAGGTTTACCTGGCCCAAC+TGG + chr4_3:54505992-54506011 Msa0648080:intron 55.0%
GAAGTGGAGGTGGTTGAAGG+GGG + chr4_3:54506061-54506080 Msa0648080:CDS 55.0%
GATGTGGTGTATGTGGTGCG+TGG - chr4_3:54504961-54504980 None:intergenic 55.0%
ACGTGCCAGCAAGTGAAGCA+TGG + chr4_3:54505046-54505065 Msa0648080:CDS 55.0%
CGTGCCAGCAAGTGAAGCAT+GGG + chr4_3:54505047-54505066 Msa0648080:CDS 55.0%
CCACTAGGTCAACGCCTCAA+CGG - chr4_3:54505330-54505349 None:intergenic 55.0%
! CGCCGCTAGACCTTTTTGGA+TGG - chr4_3:54505620-54505639 None:intergenic 55.0%
TCAGGTTTACCTGGCCCAAC+TGG + chr4_3:54505992-54506011 Msa0648080:intron 55.0%
GAAGTGGAGGTGGTTGAAGG+GGG + chr4_3:54506061-54506080 Msa0648080:CDS 55.0%
CTAGGTCAACGCCTCAACGG+AGG - chr4_3:54505327-54505346 None:intergenic 60.0%
!! CCGTTGAGGCGTTGACCTAG+TGG + chr4_3:54505327-54505346 Msa0648080:intron 60.0%
! GCTGCGCCGCTAGACCTTTT+TGG - chr4_3:54505624-54505643 None:intergenic 60.0%
CTAGGTCAACGCCTCAACGG+AGG - chr4_3:54505327-54505346 None:intergenic 60.0%
!! CCGTTGAGGCGTTGACCTAG+TGG + chr4_3:54505327-54505346 Msa0648080:intron 60.0%
! GCTGCGCCGCTAGACCTTTT+TGG - chr4_3:54505624-54505643 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 54504809 54506726 54504809 ID=Msa0648080;Name=Msa0648080
chr4_3 mRNA 54504809 54506726 54504809 ID=Msa0648080-mRNA-1;Parent=Msa0648080;Name=Msa0648080-mRNA-1;_AED=0.21;_eAED=0.21;_QI=203|1|1|1|1|1|2|435|159
chr4_3 exon 54504809 54505195 54504809 ID=Msa0648080-mRNA-1:exon:13788;Parent=Msa0648080-mRNA-1
chr4_3 exon 54505996 54506726 54505996 ID=Msa0648080-mRNA-1:exon:13789;Parent=Msa0648080-mRNA-1
chr4_3 five_prime_UTR 54504809 54505011 54504809 ID=Msa0648080-mRNA-1:five_prime_utr;Parent=Msa0648080-mRNA-1
chr4_3 CDS 54505012 54505195 54505012 ID=Msa0648080-mRNA-1:cds;Parent=Msa0648080-mRNA-1
chr4_3 CDS 54505996 54506291 54505996 ID=Msa0648080-mRNA-1:cds;Parent=Msa0648080-mRNA-1
chr4_3 three_prime_UTR 54506292 54506726 54506292 ID=Msa0648080-mRNA-1:three_prime_utr;Parent=Msa0648080-mRNA-1
Gene Sequence

>Msa0648080

ATGTTTGGTCAACTTGAGCATGAGTTAGAGCTGCACGTGCCAGCAAGTGAAGCATGGGATCTCTTTGGCACTCTTGCTATTGGAAAGGTCGTTGAGGAAGCGATGCCTGAAAGATTTCAGAAGGTGGAGCTAATTGAAGGAGATGGAGGGGTTGGGACTATTCTCAAACTCACATTCACTCCAGGTTTACCTGGCCCAACTGGTTTAAAAGAAAAGTTTACCAAGATTGATAATGAAAAGCACATCAAAGAAGTGGAGGTGGTTGAAGGGGGATGCTTAGATCTTGGATTCACACTATTTAGAGTTCGTATGGAAGTGATAGAGAAAGGTAAAGATTCAAGCATAATCAAAACTACATTAGAGTATGAAGTCAAGGAAGAGGAAGCGGCCAATGCCGCACTTGTTTCCATCCAGCAATTGGCAGACGTTGTAGAAGTTGGCAAGAATTACCTCAACAGAAACAAGGATGCAAAAGAATAA

Protein sequence

>Msa0648080

MFGQLEHELELHVPASEAWDLFGTLAIGKVVEEAMPERFQKVELIEGDGGVGTILKLTFTPGLPGPTGLKEKFTKIDNEKHIKEVEVVEGGCLDLGFTLFRVRMEVIEKGKDSSIIKTTLEYEVKEEEAANAALVSIQQLADVVEVGKNYLNRNKDAKE*