AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1371830


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1371830 MtrunA17_Chr1g0212841 93.868 212 13 0 1 212 1 212 1.60e-146 406
Msa1371830 MtrunA17_Chr3g0111011 60.096 208 83 0 3 210 55 262 1.81e-93 274
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1371830 AT1G75270.1 73.709 213 55 1 1 212 1 213 5.83e-115 327
Msa1371830 AT1G19570.1 74.057 212 54 1 1 211 1 212 6.29e-115 327
Msa1371830 AT5G16710.1 60.577 208 82 0 3 210 49 256 3.46e-96 281
Msa1371830 AT1G19550.1 55.172 174 51 3 41 211 3 152 3.48e-60 186

Find 89 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGTCAAGTTTGATGGTAAA+TGG 0.194555 tig0019249:-166403 Msa1371830:CDS
TGAGGAAAGTTTCTTGAAAA+AGG 0.205482 tig0019249:+163266 None:intergenic
TTGGACTATTCCTGAGAATT+TGG 0.207787 tig0019249:-165673 Msa1371830:CDS
AAGAGAACCCTTTGGGAAAA+TGG 0.223837 tig0019249:+166613 None:intergenic
ATTTCAGGGGATCAAATATA+TGG 0.237821 tig0019249:-165994 Msa1371830:intron
CTTATGTTTGGGACAGCAAT+AGG 0.293359 tig0019249:-163513 Msa1371830:three_prime_UTR
CACAGCTGTTGATTTGAGTT+TGG 0.323954 tig0019249:-165742 Msa1371830:CDS
CTACTTCATGCATTGACCTT+TGG 0.348598 tig0019249:+163982 None:intergenic
CCTGATTCTGATGTTATTGT+TGG 0.361346 tig0019249:-166377 Msa1371830:CDS
TGCTTTGGATGAACATCTTA+AGG 0.363226 tig0019249:-165897 Msa1371830:CDS
ACCACTAGATGGTACAGTTT+TGG 0.363899 tig0019249:+165717 None:intergenic
CAAAGTTAAGAGAACCCTTT+GGG 0.367512 tig0019249:+166606 None:intergenic
CATTCACCCAGGTTCGAATC+TGG 0.374806 tig0019249:-163410 Msa1371830:three_prime_UTR
TAACAGGGTCCATTTGTTGC+TGG 0.379644 tig0019249:-165774 Msa1371830:intron
GTTAGCAGAACTCAATGCTT+TGG 0.381868 tig0019249:-165912 Msa1371830:CDS
GTTCCAGTGGTCAAGTTTGA+TGG 0.383379 tig0019249:-166410 Msa1371830:CDS
CCAAAGGGTTCTCTTAACTT+TGG 0.391179 tig0019249:-166605 Msa1371830:CDS
TGGACCTTTGCCAAATTCTC+AGG 0.406140 tig0019249:+165663 None:intergenic
TTTAGACTACTGAGTTGTTT+CGG 0.408993 tig0019249:-163613 Msa1371830:three_prime_UTR
TTGACAATGCTGATGTTGTT+AGG 0.412327 tig0019249:-163439 Msa1371830:three_prime_UTR
AACAGGGTCCATTTGTTGCT+GGG 0.421851 tig0019249:-165773 Msa1371830:intron
GACATACTCCTCTGCAGCCT+TGG 0.421971 tig0019249:+164020 None:intergenic
GCAGAGGAGTATGTCATTGC+TGG 0.422618 tig0019249:-164012 Msa1371830:CDS
GGAGAAACAAGAGATGGTTC+AGG 0.422879 tig0019249:+166335 None:intergenic
CCAAAGTTAAGAGAACCCTT+TGG 0.428562 tig0019249:+166605 None:intergenic
TATTATTAAGAAATAAGAAT+AGG 0.428644 tig0019249:-163911 Msa1371830:three_prime_UTR
TTAATCAAATGGATGTTGTA+TGG 0.432983 tig0019249:+166568 None:intergenic
AGAGTACCATTGGGGTTTGT+CGG 0.436593 tig0019249:+166540 None:intergenic
CTCATTCTCATCATCGCAAA+TGG 0.445448 tig0019249:-166785 Msa1371830:exon
TGTCGGAGATATTAATCAAA+TGG 0.447813 tig0019249:+166557 None:intergenic
GTCAATTGAGCTAAAGCTTA+CGG 0.450367 tig0019249:+163457 None:intergenic
ACCTTCTCCCCAGCAACAAA+TGG 0.454458 tig0019249:+165765 None:intergenic
GTTGGTGCTCCAACTGTTCT+CGG 0.458021 tig0019249:-166736 Msa1371830:CDS
GTCTAAAGTTTGTCGCGATT+AGG 0.459085 tig0019249:+163629 None:intergenic
GGTCAAGTTTGATGGTAAAT+GGG 0.460396 tig0019249:-166402 Msa1371830:CDS
AGCTAAAGCTTACGGACTTA+CGG 0.462612 tig0019249:+163465 None:intergenic
TGAATCCTTGCTCTTCAGAA+AGG 0.466931 tig0019249:+165958 None:intergenic
CCAACAATAACATCAGAATC+AGG 0.477453 tig0019249:+166377 None:intergenic
GGCTCTTGAGGTTGCTGTCA+AGG 0.478726 tig0019249:-166764 Msa1371830:CDS
ACCACTGGAACCTTCCCTCC+AGG 0.482366 tig0019249:+166422 None:intergenic
AAGAGCAAGGATTCAAATGA+TGG 0.484327 tig0019249:-165950 Msa1371830:CDS
TCCATTTGTTGCTGGGGAGA+AGG 0.485126 tig0019249:-165766 Msa1371830:CDS
GACCAAGTGCTACCACTAGA+TGG 0.490749 tig0019249:+165706 None:intergenic
CGTGACCTTTCTGAAGAGCA+AGG 0.493675 tig0019249:-165963 Msa1371830:CDS
TTACCATCAAACTTGACCAC+TGG 0.501479 tig0019249:+166407 None:intergenic
CACGATTCCAGATTCGAACC+TGG 0.503446 tig0019249:+163403 None:intergenic
TCTCCTTTGATGCTATTCAA+TGG 0.506421 tig0019249:-163590 Msa1371830:three_prime_UTR
CAGATTCGAACCTGGGTGAA+TGG 0.506777 tig0019249:+163411 None:intergenic
GTTGCTGTCAAGGCTGCTGT+TGG 0.509413 tig0019249:-166754 Msa1371830:CDS
GAATGAGAAGAGAACAAAGA+AGG 0.509847 tig0019249:+166801 None:intergenic
CTTCTCTATAATAAATAAGT+AGG 0.515000 tig0019249:-163840 Msa1371830:three_prime_UTR
CACTTGGTCACTTCAAGAGT+TGG 0.517047 tig0019249:-165692 Msa1371830:CDS
TTTCAGGGGATCAAATATAT+GGG 0.518607 tig0019249:-165993 Msa1371830:intron
TTATGTTTGGGACAGCAATA+GGG 0.523116 tig0019249:-163512 Msa1371830:three_prime_UTR
AAACACAAGGGTGTCATGGC+AGG 0.528390 tig0019249:-163707 Msa1371830:three_prime_UTR
TGGACATTTCAGCCAGCCAA+TGG 0.544744 tig0019249:+163774 None:intergenic
TACACTGAGGAAAATTGAGC+AGG 0.548119 tig0019249:+166314 None:intergenic
AGGAGTATGTCATTGCTGGA+TGG 0.548576 tig0019249:-164008 Msa1371830:CDS
CATTGCTGGATGGGCACCAA+AGG 0.555766 tig0019249:-163998 Msa1371830:CDS
TGTGGGAACTAGGCAAAGGT+TGG 0.557046 tig0019249:-163313 Msa1371830:three_prime_UTR
ATCATCGCAAATGGCTCTTG+AGG 0.559050 tig0019249:-166776 Msa1371830:exon
GGAAGTGAATCCTGGAGGGA+AGG 0.560932 tig0019249:-166432 Msa1371830:CDS
GGGTTGTAGTTAAATTCATG+TGG 0.566505 tig0019249:-163492 Msa1371830:three_prime_UTR
GAGAAACAAGAGATGGTTCA+GGG 0.568330 tig0019249:+166336 None:intergenic
ATTAAGAAATAAGAATAGGA+TGG 0.569904 tig0019249:-163907 Msa1371830:three_prime_UTR
CCTAAAACACAAGGGTGTCA+TGG 0.572642 tig0019249:-163711 Msa1371830:three_prime_UTR
GGAGTATGTCATTGCTGGAT+GGG 0.575558 tig0019249:-164007 Msa1371830:CDS
CGAGAAAACCAAGGCTGCAG+AGG 0.575652 tig0019249:-164028 Msa1371830:CDS
TGACATGGTTCTAACTTCTG+AGG 0.581715 tig0019249:+163248 None:intergenic
TTACCATTGAATAGCATCAA+AGG 0.591671 tig0019249:+163587 None:intergenic
GTACAGTCTCCGAGAACAGT+TGG 0.596027 tig0019249:+166727 None:intergenic
ACAGGGTCCATTTGTTGCTG+GGG 0.596245 tig0019249:-165772 Msa1371830:intron
GGTTGTAGTTAAATTCATGT+GGG 0.596971 tig0019249:-163491 Msa1371830:three_prime_UTR
TACCATCTAGTGGTAGCACT+TGG 0.606458 tig0019249:-165708 Msa1371830:CDS
TCCTGGAGGGAAGGTTCCAG+TGG 0.613379 tig0019249:-166423 Msa1371830:CDS
ACGATTCCAGATTCGAACCT+GGG 0.620046 tig0019249:+163404 None:intergenic
ATCATGTGGGAACTAGGCAA+AGG 0.620931 tig0019249:-163317 Msa1371830:three_prime_UTR
TATTCCTGAGAATTTGGCAA+AGG 0.623001 tig0019249:-165667 Msa1371830:CDS
TTTGTACCTTGATGTAGTTG+TGG 0.632536 tig0019249:+165643 None:intergenic
AAAGGTCCACAACTACATCA+AGG 0.634770 tig0019249:-165649 Msa1371830:intron
TGAGCAGGAGAAACAAGAGA+TGG 0.641215 tig0019249:+166329 None:intergenic
TTAGGTTGCACCATTCACCC+AGG 0.645366 tig0019249:-163421 Msa1371830:three_prime_UTR
TAAATTCGTCCTAAAACACA+AGG 0.648041 tig0019249:-163720 Msa1371830:three_prime_UTR
TTGAATTTAGAGTACCATTG+GGG 0.655225 tig0019249:+166532 None:intergenic
ACCAAAACTGTACCATCTAG+TGG 0.659489 tig0019249:-165718 Msa1371830:CDS
GCTCGATCACAGTGCATGTG+TGG 0.663154 tig0019249:+163936 None:intergenic
ATATCTCCGACAAACCCCAA+TGG 0.672245 tig0019249:-166546 Msa1371830:intron
TGAATCATTCGAGAAAACCA+AGG 0.685046 tig0019249:-164037 Msa1371830:CDS
AAATTCGTCCTAAAACACAA+GGG 0.747294 tig0019249:-163719 Msa1371830:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTTTTTTAGAGAAAA+GGG + tig0019249:165245-165264 None:intergenic 10.0%
!!! AATCAAATTTTGAAATTTAA+AGG + tig0019249:165660-165679 None:intergenic 10.0%
!! TTGATAAATAATATATTACA+CGG + tig0019249:165793-165812 None:intergenic 10.0%
!! TATTATTAAGAAATAAGAAT+AGG - tig0019249:166169-166188 Msa1371830:intron 10.0%
!!! TATTTTTTTTTATAAACAAG+TGG + tig0019249:166740-166759 None:intergenic 10.0%
!! AAAAAAAAATAAAAATCATG+TGG - tig0019249:166749-166768 Msa1371830:CDS 10.0%
!! AAAAAAAATAAAAATCATGT+GGG - tig0019249:166750-166769 Msa1371830:CDS 10.0%
!!! TTTTATTTCTTTGAATTTTG+TGG - tig0019249:163600-163619 Msa1371830:three_prime_UTR 15.0%
!!! TTTATTTATTTGTAGGTTTT+TGG - tig0019249:163627-163646 Msa1371830:three_prime_UTR 15.0%
!!! TTTGAAAGTATAAAAATAGA+GGG + tig0019249:163810-163829 None:intergenic 15.0%
!! ATAAATTCACATATATACAT+TGG + tig0019249:164209-164228 None:intergenic 15.0%
!!! TTTTTTTTTTTAGAGAAAAG+GGG + tig0019249:165244-165263 None:intergenic 15.0%
!!! GATTTTTTTTTTTAGAGAAA+AGG + tig0019249:165246-165265 None:intergenic 15.0%
!!! AAATTTTGAAATTTAAAGGA+GGG + tig0019249:165656-165675 None:intergenic 15.0%
!!! TTAATAGGTTATATAACTTT+TGG - tig0019249:165732-165751 Msa1371830:CDS 15.0%
!!! TTTCATTTGTTTTCATTTTC+AGG - tig0019249:163443-163462 Msa1371830:three_prime_UTR 20.0%
!! TGGCTTATTTATTTATTTGT+AGG - tig0019249:163620-163639 Msa1371830:three_prime_UTR 20.0%
!!! GTTTGAAAGTATAAAAATAG+AGG + tig0019249:163811-163830 None:intergenic 20.0%
!!! TTTTGTGTTTTTTTCTTTTG+TGG - tig0019249:163891-163910 Msa1371830:three_prime_UTR 20.0%
!!! TTTGTGTTTTTTTCTTTTGT+GGG - tig0019249:163892-163911 Msa1371830:three_prime_UTR 20.0%
!! ACATTTCCAATATCAAATTA+TGG - tig0019249:164846-164865 Msa1371830:intron 20.0%
!! CATTTCCAATATCAAATTAT+GGG - tig0019249:164847-164866 Msa1371830:intron 20.0%
!! TATGCTAAAAAAATGTTACA+TGG + tig0019249:165140-165159 None:intergenic 20.0%
!!! TTTCATTTTTTTGGATAAAG+TGG + tig0019249:165268-165287 None:intergenic 20.0%
!!! AATTTTGAAATTTAAAGGAG+GGG + tig0019249:165655-165674 None:intergenic 20.0%
!!! CAAATTTTGAAATTTAAAGG+AGG + tig0019249:165657-165676 None:intergenic 20.0%
!! TCATCACATTATTAGTTAAT+AGG - tig0019249:165717-165736 Msa1371830:CDS 20.0%
!! TATATGAATTGATTGATTGA+TGG - tig0019249:165986-166005 Msa1371830:CDS 20.0%
!! ATTAAGAAATAAGAATAGGA+TGG - tig0019249:166173-166192 Msa1371830:intron 20.0%
!! CTTCTCTATAATAAATAAGT+AGG - tig0019249:166240-166259 Msa1371830:intron 20.0%
!!! TTCACATTTTAAAGCTTATA+TGG + tig0019249:166329-166348 None:intergenic 20.0%
!!! AGATTTTAAGTTCTTATGTT+TGG - tig0019249:166555-166574 Msa1371830:CDS 20.0%
!!! GATTTTAAGTTCTTATGTTT+GGG - tig0019249:166556-166575 Msa1371830:CDS 20.0%
! TTAATCAAATGGATGTTGTA+TGG + tig0019249:163515-163534 None:intergenic 25.0%
! GTTAATTAGCTATCAATTAC+AGG + tig0019249:164264-164283 None:intergenic 25.0%
!!! TACAAAGTTGTTTTCTGTAA+TGG - tig0019249:164454-164473 Msa1371830:intron 25.0%
! ATGGATGTAATCTTATCTTA+TGG - tig0019249:164473-164492 Msa1371830:intron 25.0%
! AAGTACAACAAAAAAACAGT+TGG + tig0019249:164613-164632 None:intergenic 25.0%
! TTATGAAGAAAATTCAAGTG+TGG + tig0019249:164642-164661 None:intergenic 25.0%
!!! GGGTTTTAAATCTTACATAT+TGG - tig0019249:165023-165042 Msa1371830:intron 25.0%
!! ATTGGATAGAGATTTCTTTT+AGG - tig0019249:165041-165060 Msa1371830:intron 25.0%
! CAAGTGATTAAATTTATCTC+TGG - tig0019249:165162-165181 Msa1371830:intron 25.0%
!!! AAGCATGCTTTTCATTTTTT+TGG + tig0019249:165277-165296 None:intergenic 25.0%
! ATTGTAGAAGTTGACAATTA+GGG - tig0019249:165426-165445 Msa1371830:intron 25.0%
! TCATAAATCAAAGAAACAAC+AGG + tig0019249:165520-165539 None:intergenic 25.0%
! AAATACATCAATACTCCTAA+AGG + tig0019249:165846-165865 None:intergenic 25.0%
!! GTTGTAGGTATTGTAAATTA+AGG + tig0019249:165905-165924 None:intergenic 25.0%
!!! TTTTTTTCAGCAAATGCAAA+AGG + tig0019249:165933-165952 None:intergenic 25.0%
!!! ACTGTGTTTTATTAATCCAT+TGG - tig0019249:166290-166309 Msa1371830:intron 25.0%
!! CTGAGATTTATTTCTGTTAC+CGG - tig0019249:163402-163421 Msa1371830:three_prime_UTR 30.0%
AATCGTGAAAAATGTAGAAC+CGG + tig0019249:163424-163443 None:intergenic 30.0%
TGTCGGAGATATTAATCAAA+TGG + tig0019249:163526-163545 None:intergenic 30.0%
! TTGAATTTAGAGTACCATTG+GGG + tig0019249:163551-163570 None:intergenic 30.0%
! GTTGAATTTAGAGTACCATT+GGG + tig0019249:163552-163571 None:intergenic 30.0%
! AGTTGAATTTAGAGTACCAT+TGG + tig0019249:163553-163572 None:intergenic 30.0%
TTGAATACCATCTTGCAAAT+GGG + tig0019249:163846-163865 None:intergenic 30.0%
!!! TTTTTTTCTTTTGTGGGATG+AGG - tig0019249:163898-163917 Msa1371830:three_prime_UTR 30.0%
!!! GTATACATGCTTGTTTTGAT+TGG - tig0019249:163960-163979 Msa1371830:three_prime_UTR 30.0%
ATTTCAGGGGATCAAATATA+TGG - tig0019249:164086-164105 Msa1371830:intron 30.0%
TTTCAGGGGATCAAATATAT+GGG - tig0019249:164087-164106 Msa1371830:intron 30.0%
!!! TCTTTGTTTTAAAGCAAAGC+TGG - tig0019249:164774-164793 Msa1371830:intron 30.0%
GCAAACCCATAATTTGATAT+TGG + tig0019249:164855-164874 None:intergenic 30.0%
GATATGGATGAAAGATGTAT+GGG + tig0019249:164927-164946 None:intergenic 30.0%
TGATATGGATGAAAGATGTA+TGG + tig0019249:164928-164947 None:intergenic 30.0%
!! GTACTTCAATCGTTTTGATA+TGG + tig0019249:164943-164962 None:intergenic 30.0%
TTAAAGTCTGAACTTAAAGC+TGG - tig0019249:165002-165021 Msa1371830:intron 30.0%
TAAAGTCTGAACTTAAAGCT+GGG - tig0019249:165003-165022 Msa1371830:intron 30.0%
!! AATTATGCGTGGCTATTTTA+GGG - tig0019249:165068-165087 Msa1371830:intron 30.0%
!!! TTTTTTTTAGAGAAAAGGGG+AGG + tig0019249:165241-165260 None:intergenic 30.0%
AATTGTCAACTTCTACAATC+TGG + tig0019249:165425-165444 None:intergenic 30.0%
GATTGTAGAAGTTGACAATT+AGG - tig0019249:165425-165444 Msa1371830:intron 30.0%
TAGTTCACATTAACTAGTCA+TGG - tig0019249:165472-165491 Msa1371830:intron 30.0%
ATCTTCAGACTTAAAGTTGA+TGG + tig0019249:165599-165618 None:intergenic 30.0%
TATATTACACGGATTCAATG+TGG + tig0019249:165782-165801 None:intergenic 30.0%
ATATATCGAGTTAGACCTTT+AGG - tig0019249:165828-165847 Msa1371830:intron 30.0%
TACCTAAGAGATTCATTGTA+TGG + tig0019249:165874-165893 None:intergenic 30.0%
! GGTGTAACTTATCATTTTGA+AGG - tig0019249:166194-166213 Msa1371830:intron 30.0%
!! TTCATGTGTGTTTTGTTGAT+GGG - tig0019249:166266-166285 Msa1371830:intron 30.0%
!! TGTTTTATTAATCCATTGGC+TGG - tig0019249:166294-166313 Msa1371830:intron 30.0%
TAAATTCGTCCTAAAACACA+AGG - tig0019249:166360-166379 Msa1371830:CDS 30.0%
AAATTCGTCCTAAAACACAA+GGG - tig0019249:166361-166380 Msa1371830:CDS 30.0%
TTTAGACTACTGAGTTGTTT+CGG - tig0019249:166467-166486 Msa1371830:intron 30.0%
TTACCATTGAATAGCATCAA+AGG + tig0019249:166496-166515 None:intergenic 30.0%
GGTTGTAGTTAAATTCATGT+GGG - tig0019249:166589-166608 Msa1371830:CDS 30.0%
ATAAAAATCATGTGGGAACT+AGG - tig0019249:166757-166776 Msa1371830:CDS 30.0%
GAAAGTTTCTTGAAAAAGGA+GGG + tig0019249:166813-166832 None:intergenic 30.0%
TGAGGAAAGTTTCTTGAAAA+AGG + tig0019249:166817-166836 None:intergenic 30.0%
GAATGAGAAGAGAACAAAGA+AGG + tig0019249:163282-163301 None:intergenic 35.0%
CAAAGTTAAGAGAACCCTTT+GGG + tig0019249:163477-163496 None:intergenic 35.0%
! TGGTCAAGTTTGATGGTAAA+TGG - tig0019249:163677-163696 Msa1371830:three_prime_UTR 35.0%
! GGTCAAGTTTGATGGTAAAT+GGG - tig0019249:163678-163697 Msa1371830:three_prime_UTR 35.0%
CCAACAATAACATCAGAATC+AGG + tig0019249:163706-163725 None:intergenic 35.0%
CCTGATTCTGATGTTATTGT+TGG - tig0019249:163703-163722 Msa1371830:three_prime_UTR 35.0%
TGAATACCATCTTGCAAATG+GGG + tig0019249:163845-163864 None:intergenic 35.0%
CTTGAATACCATCTTGCAAA+TGG + tig0019249:163847-163866 None:intergenic 35.0%
TTCACGATGTTCACAATTTC+AGG - tig0019249:164071-164090 Msa1371830:intron 35.0%
TCACGATGTTCACAATTTCA+GGG - tig0019249:164072-164091 Msa1371830:intron 35.0%
AAGAGCAAGGATTCAAATGA+TGG - tig0019249:164130-164149 Msa1371830:intron 35.0%
! TGCTTTGGATGAACATCTTA+AGG - tig0019249:164183-164202 Msa1371830:intron 35.0%
AATTAACCACACTAACATGC+TGG - tig0019249:164277-164296 Msa1371830:intron 35.0%
TTGGACTATTCCTGAGAATT+TGG - tig0019249:164407-164426 Msa1371830:intron 35.0%
TATTCCTGAGAATTTGGCAA+AGG - tig0019249:164413-164432 Msa1371830:intron 35.0%
TTTGTACCTTGATGTAGTTG+TGG + tig0019249:164440-164459 None:intergenic 35.0%
CGCAAAAGACATGACTAAAA+GGG + tig0019249:164501-164520 None:intergenic 35.0%
ACGCAAAAGACATGACTAAA+AGG + tig0019249:164502-164521 None:intergenic 35.0%
TTCACAGCTGTTCAATTCAA+TGG + tig0019249:164527-164546 None:intergenic 35.0%
TGTAGTCAACATAAAGTGTG+TGG - tig0019249:164703-164722 Msa1371830:intron 35.0%
! CAATTTGCTTCTGGAAAGAT+TGG + tig0019249:164814-164833 None:intergenic 35.0%
! TGTGAACATCAATTTGCTTC+TGG + tig0019249:164823-164842 None:intergenic 35.0%
!! TGCTGGTGTCATGAAAAAAT+TGG - tig0019249:164881-164900 Msa1371830:intron 35.0%
!! TGGTGTCATGAAAAAATTGG+TGG - tig0019249:164884-164903 Msa1371830:intron 35.0%
!! TTTTAGGTCTCAATTATGCG+TGG - tig0019249:165057-165076 Msa1371830:intron 35.0%
!! CAATTATGCGTGGCTATTTT+AGG - tig0019249:165067-165086 Msa1371830:intron 35.0%
GGTGAGTTAAGAAATAGAGA+AGG + tig0019249:165220-165239 None:intergenic 35.0%
!! CATGCTTTTCTTATTTGCCA+GGG - tig0019249:165290-165309 Msa1371830:intron 35.0%
! GTTCAATGAAGCATCAGTAA+GGG + tig0019249:165368-165387 None:intergenic 35.0%
! AGTTCAATGAAGCATCAGTA+AGG + tig0019249:165369-165388 None:intergenic 35.0%
GTCCATACAATGAATCTCTT+AGG - tig0019249:165869-165888 Msa1371830:intron 35.0%
! ATGCAAAAGGCTTTAGTTGT+AGG + tig0019249:165920-165939 None:intergenic 35.0%
TGAATCATTCGAGAAAACCA+AGG - tig0019249:166043-166062 Msa1371830:intron 35.0%
!! GTTCATGTGTGTTTTGTTGA+TGG - tig0019249:166265-166284 Msa1371830:intron 35.0%
TCTCCTTTGATGCTATTCAA+TGG - tig0019249:166490-166509 Msa1371830:intron 35.0%
! TTATGTTTGGGACAGCAATA+GGG - tig0019249:166568-166587 Msa1371830:CDS 35.0%
GGGTTGTAGTTAAATTCATG+TGG - tig0019249:166588-166607 Msa1371830:CDS 35.0%
GTCAATTGAGCTAAAGCTTA+CGG + tig0019249:166626-166645 None:intergenic 35.0%
TTGACAATGCTGATGTTGTT+AGG - tig0019249:166641-166660 Msa1371830:intron 35.0%
GGAAAGTTTCTTGAAAAAGG+AGG + tig0019249:166814-166833 None:intergenic 35.0%
CTCATTCTCATCATCGCAAA+TGG - tig0019249:163295-163314 Msa1371830:three_prime_UTR 40.0%
!! TTTCAGGTCCATTTTCCCAA+AGG - tig0019249:163459-163478 Msa1371830:three_prime_UTR 40.0%
! TTCAGGTCCATTTTCCCAAA+GGG - tig0019249:163460-163479 Msa1371830:three_prime_UTR 40.0%
! AAGAGAACCCTTTGGGAAAA+TGG + tig0019249:163470-163489 None:intergenic 40.0%
CCAAAGTTAAGAGAACCCTT+TGG + tig0019249:163478-163497 None:intergenic 40.0%
CCAAAGGGTTCTCTTAACTT+TGG - tig0019249:163475-163494 Msa1371830:three_prime_UTR 40.0%
!! AGGTTTTTGGAAGTGAATCC+TGG - tig0019249:163640-163659 Msa1371830:three_prime_UTR 40.0%
!! TTTTTGGAAGTGAATCCTGG+AGG - tig0019249:163643-163662 Msa1371830:three_prime_UTR 40.0%
!! TTTTGGAAGTGAATCCTGGA+GGG - tig0019249:163644-163663 Msa1371830:three_prime_UTR 40.0%
TTACCATCAAACTTGACCAC+TGG + tig0019249:163676-163695 None:intergenic 40.0%
GAGAAACAAGAGATGGTTCA+GGG + tig0019249:163747-163766 None:intergenic 40.0%
TACACTGAGGAAAATTGAGC+AGG + tig0019249:163769-163788 None:intergenic 40.0%
TGATGTGATGTCATACACTG+AGG + tig0019249:163782-163801 None:intergenic 40.0%
ACTATTCCCCATTTGCAAGA+TGG - tig0019249:163836-163855 Msa1371830:three_prime_UTR 40.0%
CACGATGTTCACAATTTCAG+GGG - tig0019249:164073-164092 Msa1371830:intron 40.0%
TGAATCCTTGCTCTTCAGAA+AGG + tig0019249:164125-164144 None:intergenic 40.0%
GTTAGCAGAACTCAATGCTT+TGG - tig0019249:164168-164187 Msa1371830:intron 40.0%
!! AACATGCTGGAGGTATTAAC+AGG - tig0019249:164290-164309 Msa1371830:intron 40.0%
!! ACATGCTGGAGGTATTAACA+GGG - tig0019249:164291-164310 Msa1371830:intron 40.0%
!! CACAGCTGTTGATTTGAGTT+TGG - tig0019249:164338-164357 Msa1371830:intron 40.0%
ACCAAAACTGTACCATCTAG+TGG - tig0019249:164362-164381 Msa1371830:intron 40.0%
! ACCACTAGATGGTACAGTTT+TGG + tig0019249:164366-164385 None:intergenic 40.0%
AAAGGTCCACAACTACATCA+AGG - tig0019249:164431-164450 Msa1371830:intron 40.0%
!! AACTGCATGATGGCATTGAT+TGG - tig0019249:164547-164566 Msa1371830:intron 40.0%
! TGCTTGGCAATGAGAACTTT+TGG - tig0019249:164570-164589 Msa1371830:intron 40.0%
GTCAACATAAAGTGTGTGGA+AGG - tig0019249:164707-164726 Msa1371830:intron 40.0%
TGGATGAAAGATGTATGGGA+AGG + tig0019249:164923-164942 None:intergenic 40.0%
!! GCATGCTTTTCTTATTTGCC+AGG - tig0019249:165289-165308 Msa1371830:intron 40.0%
GGATAATTAAGAGTGAACCC+TGG + tig0019249:165310-165329 None:intergenic 40.0%
TATCCTGCTTGACATGTACA+TGG - tig0019249:165325-165344 Msa1371830:intron 40.0%
! CTACTTCATGCATTGACCTT+TGG + tig0019249:166101-166120 None:intergenic 40.0%
! GTCTAAAGTTTGTCGCGATT+AGG + tig0019249:166454-166473 None:intergenic 40.0%
! CTTATGTTTGGGACAGCAAT+AGG - tig0019249:166567-166586 Msa1371830:CDS 40.0%
AGCTAAAGCTTACGGACTTA+CGG + tig0019249:166618-166637 None:intergenic 40.0%
ATCATCGCAAATGGCTCTTG+AGG - tig0019249:163304-163323 Msa1371830:three_prime_UTR 45.0%
ATATCTCCGACAAACCCCAA+TGG - tig0019249:163534-163553 Msa1371830:three_prime_UTR 45.0%
! AGAGTACCATTGGGGTTTGT+CGG + tig0019249:163543-163562 None:intergenic 45.0%
GTTCCAGTGGTCAAGTTTGA+TGG - tig0019249:163670-163689 Msa1371830:three_prime_UTR 45.0%
GGAGAAACAAGAGATGGTTC+AGG + tig0019249:163748-163767 None:intergenic 45.0%
TGAGCAGGAGAAACAAGAGA+TGG + tig0019249:163754-163773 None:intergenic 45.0%
TTTGTGGGATGAGGAATCTG+AGG - tig0019249:163907-163926 Msa1371830:three_prime_UTR 45.0%
TTGTGGGATGAGGAATCTGA+GGG - tig0019249:163908-163927 Msa1371830:three_prime_UTR 45.0%
TAACCACACTAACATGCTGG+AGG - tig0019249:164280-164299 Msa1371830:intron 45.0%
ATACCTCCAGCATGTTAGTG+TGG + tig0019249:164286-164305 None:intergenic 45.0%
! TAACAGGGTCCATTTGTTGC+TGG - tig0019249:164306-164325 Msa1371830:intron 45.0%
! AACAGGGTCCATTTGTTGCT+GGG - tig0019249:164307-164326 Msa1371830:intron 45.0%
TACCATCTAGTGGTAGCACT+TGG - tig0019249:164372-164391 Msa1371830:intron 45.0%
CACTTGGTCACTTCAAGAGT+TGG - tig0019249:164388-164407 Msa1371830:intron 45.0%
TGGACCTTTGCCAAATTCTC+AGG + tig0019249:164420-164439 None:intergenic 45.0%
CAGCTGTGAAAACTGCATGA+TGG - tig0019249:164537-164556 Msa1371830:intron 45.0%
!! TGATGGCATTGATTGGTGCT+TGG - tig0019249:164554-164573 Msa1371830:intron 45.0%
!! TATGGGTTTGCTATGCTTGC+TGG - tig0019249:164864-164883 Msa1371830:intron 45.0%
CTTCCATGTACATGTCAAGC+AGG + tig0019249:165331-165350 None:intergenic 45.0%
! AGGAGTATGTCATTGCTGGA+TGG - tig0019249:166072-166091 Msa1371830:intron 45.0%
GGAGTATGTCATTGCTGGAT+GGG - tig0019249:166073-166092 Msa1371830:intron 45.0%
! CCATGACACCCTTGTGTTTT+AGG + tig0019249:166372-166391 None:intergenic 45.0%
!! CCTAAAACACAAGGGTGTCA+TGG - tig0019249:166369-166388 Msa1371830:CDS 45.0%
ACGATTCCAGATTCGAACCT+GGG + tig0019249:166679-166698 None:intergenic 45.0%
ATCATGTGGGAACTAGGCAA+AGG - tig0019249:166763-166782 Msa1371830:CDS 45.0%
!! TTAAAAATTTAACAAAAATA+AGG + tig0019249:164241-164260 None:intergenic 5.0%
! GTTGGTGCTCCAACTGTTCT+CGG - tig0019249:163344-163363 Msa1371830:three_prime_UTR 50.0%
GTACAGTCTCCGAGAACAGT+TGG + tig0019249:163356-163375 None:intergenic 50.0%
! CGTGACCTTTCTGAAGAGCA+AGG - tig0019249:164117-164136 Msa1371830:intron 50.0%
! ACAGGGTCCATTTGTTGCTG+GGG - tig0019249:164308-164327 Msa1371830:intron 50.0%
! TCCATTTGTTGCTGGGGAGA+AGG - tig0019249:164314-164333 Msa1371830:intron 50.0%
ACCTTCTCCCCAGCAACAAA+TGG + tig0019249:164318-164337 None:intergenic 50.0%
GACCAAGTGCTACCACTAGA+TGG + tig0019249:164377-164396 None:intergenic 50.0%
! GCAGAGGAGTATGTCATTGC+TGG - tig0019249:166068-166087 Msa1371830:intron 50.0%
TGGACATTTCAGCCAGCCAA+TGG + tig0019249:166309-166328 None:intergenic 50.0%
!! AAACACAAGGGTGTCATGGC+AGG - tig0019249:166373-166392 Msa1371830:CDS 50.0%
! TTAGGTTGCACCATTCACCC+AGG - tig0019249:166659-166678 Msa1371830:intron 50.0%
CAGATTCGAACCTGGGTGAA+TGG + tig0019249:166672-166691 None:intergenic 50.0%
CATTCACCCAGGTTCGAATC+TGG - tig0019249:166670-166689 Msa1371830:intron 50.0%
CACGATTCCAGATTCGAACC+TGG + tig0019249:166680-166699 None:intergenic 50.0%
TGTGGGAACTAGGCAAAGGT+TGG - tig0019249:166767-166786 Msa1371830:CDS 50.0%
GGCTCTTGAGGTTGCTGTCA+AGG - tig0019249:163316-163335 Msa1371830:three_prime_UTR 55.0%
GTTGCTGTCAAGGCTGCTGT+TGG - tig0019249:163326-163345 Msa1371830:three_prime_UTR 55.0%
GGAAGTGAATCCTGGAGGGA+AGG - tig0019249:163648-163667 Msa1371830:three_prime_UTR 55.0%
GAGGAATCTGAGGGAGACTG+TGG - tig0019249:163917-163936 Msa1371830:three_prime_UTR 55.0%
TGTGTACACCTGCACGCACA+AGG - tig0019249:165573-165592 Msa1371830:intron 55.0%
AGGGGAAGAAGACACTGCAG+TGG + tig0019249:165637-165656 None:intergenic 55.0%
CGAGAAAACCAAGGCTGCAG+AGG - tig0019249:166052-166071 Msa1371830:intron 55.0%
GACATACTCCTCTGCAGCCT+TGG + tig0019249:166063-166082 None:intergenic 55.0%
CATTGCTGGATGGGCACCAA+AGG - tig0019249:166082-166101 Msa1371830:intron 55.0%
GCTCGATCACAGTGCATGTG+TGG + tig0019249:166147-166166 None:intergenic 55.0%
TCCTGGAGGGAAGGTTCCAG+TGG - tig0019249:163657-163676 Msa1371830:three_prime_UTR 60.0%
ACCACTGGAACCTTCCCTCC+AGG + tig0019249:163661-163680 None:intergenic 60.0%
!! GTTGATGGCCTTGTGCGTGC+AGG + tig0019249:165584-165603 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0019249 gene 163258 166844 163258 ID=Msa1371830;Name=Msa1371830
tig0019249 mRNA 163258 166844 163258 ID=Msa1371830-mRNA-1;Parent=Msa1371830;Name=Msa1371830-mRNA-1;_AED=0.10;_eAED=0.10;_QI=56|1|1|1|1|1|6|729|212
tig0019249 exon 163258 164073 163258 ID=Msa1371830-mRNA-1:exon:2412;Parent=Msa1371830-mRNA-1
tig0019249 exon 165650 165790 165650 ID=Msa1371830-mRNA-1:exon:2411;Parent=Msa1371830-mRNA-1
tig0019249 exon 165892 166009 165892 ID=Msa1371830-mRNA-1:exon:2410;Parent=Msa1371830-mRNA-1
tig0019249 exon 166317 166460 166317 ID=Msa1371830-mRNA-1:exon:2409;Parent=Msa1371830-mRNA-1
tig0019249 exon 166547 166637 166547 ID=Msa1371830-mRNA-1:exon:2408;Parent=Msa1371830-mRNA-1
tig0019249 exon 166731 166844 166731 ID=Msa1371830-mRNA-1:exon:2407;Parent=Msa1371830-mRNA-1
tig0019249 five_prime_UTR 166789 166844 166789 ID=Msa1371830-mRNA-1:five_prime_utr;Parent=Msa1371830-mRNA-1
tig0019249 CDS 166731 166788 166731 ID=Msa1371830-mRNA-1:cds;Parent=Msa1371830-mRNA-1
tig0019249 CDS 166547 166637 166547 ID=Msa1371830-mRNA-1:cds;Parent=Msa1371830-mRNA-1
tig0019249 CDS 166317 166460 166317 ID=Msa1371830-mRNA-1:cds;Parent=Msa1371830-mRNA-1
tig0019249 CDS 165892 166009 165892 ID=Msa1371830-mRNA-1:cds;Parent=Msa1371830-mRNA-1
tig0019249 CDS 165650 165790 165650 ID=Msa1371830-mRNA-1:cds;Parent=Msa1371830-mRNA-1
tig0019249 CDS 163987 164073 163987 ID=Msa1371830-mRNA-1:cds;Parent=Msa1371830-mRNA-1
tig0019249 three_prime_UTR 163258 163986 163258 ID=Msa1371830-mRNA-1:three_prime_utr;Parent=Msa1371830-mRNA-1
Gene Sequence

>Msa1371830

ATGGCTCTTGAGGTTGCTGTCAAGGCTGCTGTTGGTGCTCCAACTGTTCTCGGAGACTGTCCATTTTCCCAAAGGGTTCTCTTAACTTTGGAAGAGAAGAAGATTCCATACAACATCCATTTGATTAATATCTCCGACAAACCCCAATGGTTTTTGGAAGTGAATCCTGGAGGGAAGGTTCCAGTGGTCAAGTTTGATGGTAAATGGGTTCCTGATTCTGATGTTATTGTTGGAATTCTTGAAGACAAATACCCTGAACCATCTCTTGTTTCTCCTGCTCAATTTTCCTCAGTGGGATCAAATATATGGGATACTTTCGTGACCTTTCTGAAGAGCAAGGATTCAAATGATGGAACAGAACAAGCTTTGTTAGCAGAACTCAATGCTTTGGATGAACATCTTAAGGCCAATGGTCCATTTGTTGCTGGGGAGAAGGTCACAGCTGTTGATTTGAGTTTGGCACCAAAACTGTACCATCTAGTGGTAGCACTTGGTCACTTCAAGAGTTGGACTATTCCTGAGAATTTGGCAAAGGTCCACAACTACATCAAGTTGCTCTTCTCTCGTGAATCATTCGAGAAAACCAAGGCTGCAGAGGAGTATGTCATTGCTGGATGGGCACCAAAGGTCAATGCATGA

Protein sequence

>Msa1371830

MALEVAVKAAVGAPTVLGDCPFSQRVLLTLEEKKIPYNIHLINISDKPQWFLEVNPGGKVPVVKFDGKWVPDSDVIVGILEDKYPEPSLVSPAQFSSVGSNIWDTFVTFLKSKDSNDGTEQALLAELNALDEHLKANGPFVAGEKVTAVDLSLAPKLYHLVVALGHFKSWTIPENLAKVHNYIKLLFSRESFEKTKAAEEYVIAGWAPKVNA*