AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0535450


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0535450 MtrunA17_Chr4g0009941 97.647 255 6 0 47 301 1 255 0.0 514
Msa0535450 MtrunA17_Chr7g0238901 79.771 262 53 0 40 301 68 329 1.54e-158 445
Msa0535450 MtrunA17_Chr8g0338051 30.085 236 126 8 81 294 100 318 1.87e-24 100
Msa0535450 MtrunA17_Chr4g0064601 27.097 310 166 13 20 300 14 292 3.88e-14 71.2
Msa0535450 MtrunA17_Chr4g0034391 45.946 74 39 1 153 225 183 256 1.29e-13 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0535450 AT2G37660.1 76.628 261 61 0 41 301 65 325 2.64e-154 434
Msa0535450 AT5G02240.1 80.242 248 49 0 54 301 6 253 2.89e-150 421
Msa0535450 AT4G31530.1 30.992 242 128 8 81 300 100 324 7.77e-24 99.4
Msa0535450 AT4G31530.2 31.507 219 112 7 81 278 100 301 5.07e-22 94.7
Msa0535450 AT2G34460.1 30.196 255 140 11 55 297 49 277 2.96e-18 83.2
Msa0535450 AT3G18890.1 28.085 235 126 7 31 244 66 278 2.77e-13 70.5

Find 92 sgRNAs with CRISPR-Local

Find 315 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTGTGTTGGTTGGGTCTA+TGG 0.227152 4_1:-11752562 Msa0535450:CDS
ATACTATTCTTGTGGCATTC+TGG 0.254330 4_1:-11750047 Msa0535450:three_prime_UTR
AGACTTCAATGAGTGATTTC+AGG 0.293709 4_1:-11750252 Msa0535450:three_prime_UTR
TTGTTGTTTGTTGGTAGTTT+AGG 0.300721 4_1:+11755410 None:intergenic
TAACCATCCTTTGAACAGTT+TGG 0.309070 4_1:-11752526 Msa0535450:CDS
CAAACCACTGTCCTTGTTAC+TGG 0.319736 4_1:-11755262 Msa0535450:CDS
GAAGAATATCTGTCCAATTC+TGG 0.321510 4_1:-11752288 Msa0535450:CDS
AACCATCCTTTGAACAGTTT+GGG 0.323678 4_1:-11752525 Msa0535450:CDS
TTGAATTGAATTGAATTTGA+TGG 0.334452 4_1:+11755304 None:intergenic
CCTTTGAACAGTTTGGGAAA+TGG 0.335160 4_1:-11752519 Msa0535450:CDS
GAAGAAAGCAAACAGAAAAT+TGG 0.341940 4_1:-11753555 Msa0535450:CDS
CAGATAAGCACTAATGACTT+TGG 0.346603 4_1:+11750327 None:intergenic
GCATCTGTACCTTGAATTGC+AGG 0.352388 4_1:+11753480 None:intergenic
CGATGAAGAAAAGAAGGTTC+TGG 0.363458 4_1:+11755367 None:intergenic
AAACTCAGGCCTTCCACCTT+TGG 0.364997 4_1:+11753404 None:intergenic
AAGAAATATTAAGATTTGTA+TGG 0.366220 4_1:+11750072 None:intergenic
CGTGTATGGAACACCAGAAT+TGG 0.369285 4_1:+11752275 None:intergenic
TTCAATTCAATTCAATTCAA+TGG 0.374172 4_1:-11755296 Msa0535450:CDS
CCAAACCTCTGGCAATATAT+TGG 0.375239 4_1:+11753586 None:intergenic
TATGATAGGTTGACTGGATT+GGG 0.379614 4_1:-11753261 Msa0535450:intron
AAACTGTTCAAAGGATGGTT+AGG 0.380370 4_1:+11752528 None:intergenic
ATTGTGTTGGTTGGGTCTAT+GGG 0.382254 4_1:-11752561 Msa0535450:CDS
CCAATATATTGCCAGAGGTT+TGG 0.384643 4_1:-11753586 Msa0535450:CDS
AGATAAGCACTAATGACTTT+GGG 0.391470 4_1:+11750328 None:intergenic
TTCAGAAATAAGTTAGATAT+AGG 0.394570 4_1:-11750284 Msa0535450:three_prime_UTR
TTGATAAAGAAGGAGGTGTT+CGG 0.404923 4_1:-11751450 Msa0535450:CDS
AAGAGGTTGTTGTTGTTTGT+TGG 0.407289 4_1:+11755401 None:intergenic
AATAGCATTAGCACCTGTTC+AGG 0.409482 4_1:+11753360 None:intergenic
AATTGCAGGAACAATGCTTT+CGG 0.413542 4_1:+11753494 None:intergenic
AAAGCCTTGAAGTCCTTTGT+TGG 0.422367 4_1:+11750443 None:intergenic
CAAACCCAGGTTTCATTTGT+GGG 0.437050 4_1:+11753433 None:intergenic
GTTGGTTCACCTGCACCCTC+AGG 0.437593 4_1:+11750461 None:intergenic
ATTCAATTCAATTCAATGGC+AGG 0.439004 4_1:-11755292 Msa0535450:CDS
ATATGATAGGTTGACTGGAT+TGG 0.441585 4_1:-11753262 Msa0535450:intron
TTTGGGAAATGGAAATATAC+TGG 0.444100 4_1:-11752508 Msa0535450:intron
AGCATTGTTCCTGCAATTCA+AGG 0.445346 4_1:-11753489 Msa0535450:CDS
TCAAACCCAGGTTTCATTTG+TGG 0.465991 4_1:+11753432 None:intergenic
TGAACCAACAAAGGACTTCA+AGG 0.468496 4_1:-11750447 Msa0535450:CDS
ACTGTCCTTGTTACTGGTGC+TGG 0.468562 4_1:-11755256 Msa0535450:CDS
GTGTACCTTATGACCGTGTA+TGG 0.469914 4_1:+11752261 None:intergenic
TTCTGATCTAACCAAACCTC+TGG 0.473775 4_1:+11753575 None:intergenic
TGTAGCAGAAGTCTGTGTTC+AGG 0.473986 4_1:-11751362 Msa0535450:intron
TGTTGGTAGTTTAGGAACAT+TGG 0.474332 4_1:+11755418 None:intergenic
TTGACAGGCACTAAATTATG+AGG 0.476024 4_1:-11750519 Msa0535450:intron
TGATAAAGAAGGAGGTGTTC+GGG 0.478613 4_1:-11751449 Msa0535450:CDS
TGAAGCATATTGTGTTGGTT+GGG 0.478830 4_1:-11752569 Msa0535450:CDS
TGCTACATCAGCTCTAGGTA+TGG 0.479729 4_1:+11751378 None:intergenic
GGTGTTCGGGAACTCATTGT+AGG 0.485567 4_1:-11751436 Msa0535450:CDS
GTGTTCCATACACGGTCATA+AGG 0.495688 4_1:-11752266 Msa0535450:intron
TCAGGCCTTCCACCTTTGGT+TGG 0.499708 4_1:+11753408 None:intergenic
TTCCCAAACTGTTCAAAGGA+TGG 0.501526 4_1:+11752523 None:intergenic
AACTGTTCAAAGGATGGTTA+GGG 0.504635 4_1:+11752529 None:intergenic
CCATTTCCCAAACTGTTCAA+AGG 0.506648 4_1:+11752519 None:intergenic
TGATGGTGCATATCCTGAAC+AGG 0.512492 4_1:-11753373 Msa0535450:intron
CCATGAACAGCTAAGGCTGC+AGG 0.516056 4_1:-11752594 Msa0535450:intron
GTGAAGCATATTGTGTTGGT+TGG 0.518358 4_1:-11752570 Msa0535450:CDS
GCATCAAAACCTGAGGGTGC+AGG 0.524749 4_1:-11750470 Msa0535450:CDS
TTATGAGGAGACTAAATTCA+AGG 0.530143 4_1:-11750504 Msa0535450:CDS
TATATCTAACTTATTTCTGA+AGG 0.530502 4_1:+11750286 None:intergenic
TTTCTTTGATACTATTCTTG+TGG 0.534447 4_1:-11750055 Msa0535450:three_prime_UTR
GGAAAGATTGTATGATCAAG+AGG 0.540030 4_1:+11750093 None:intergenic
GTGTTGGTTGGGTCTATGGG+TGG 0.540126 4_1:-11752558 Msa0535450:CDS
CCTTGTTGATTCAGACCTGG+TGG 0.541562 4_1:-11751478 Msa0535450:intron
GCTGTCCCACAAATGAAACC+TGG 0.549601 4_1:-11753438 Msa0535450:CDS
TGAGGACGATGAAGAAAAGA+AGG 0.550001 4_1:+11755361 None:intergenic
CAATTCTGGTGTTCCATACA+CGG 0.554776 4_1:-11752274 Msa0535450:CDS
GAAAGCAAACAGAAAATTGG+TGG 0.572686 4_1:-11753552 Msa0535450:CDS
GTGTTCGGGAACTCATTGTA+GGG 0.572877 4_1:-11751435 Msa0535450:CDS
CCTTTGGTTGGATCAAACCC+AGG 0.573204 4_1:+11753420 None:intergenic
GGTGGCTTGCTTGATAAAGA+AGG 0.575976 4_1:-11751460 Msa0535450:CDS
ACTGGTGCTGGTGGTCGCAC+AGG 0.581423 4_1:-11755244 Msa0535450:intron
TCTTTATCAAGCAAGCCACC+AGG 0.585110 4_1:+11751463 None:intergenic
GGGTTTGATCCAACCAAAGG+TGG 0.593347 4_1:-11753417 Msa0535450:CDS
TTGATCCAACCAAAGGTGGA+AGG 0.601871 4_1:-11753413 Msa0535450:CDS
ACTTCTGCTACATCAGCTCT+AGG 0.602986 4_1:+11751373 None:intergenic
TCGGGAACTCATTGTAGGGA+AGG 0.603080 4_1:-11751431 Msa0535450:CDS
TTCTGGATTATGTTGTGAAG+AGG 0.606355 4_1:+11755384 None:intergenic
CGCGACCAATATATTGCCAG+AGG 0.611486 4_1:-11753591 Msa0535450:CDS
GACCACCAGCACCAGTAACA+AGG 0.614518 4_1:+11755251 None:intergenic
GTCCTTGTTACTGGTGCTGG+TGG 0.619985 4_1:-11755253 Msa0535450:CDS
CTGTCCCACAAATGAAACCT+GGG 0.620890 4_1:-11753437 Msa0535450:CDS
CCATCATCGAAATAAAACTC+AGG 0.630148 4_1:+11753390 None:intergenic
AGGAGTGAAGCATATTGTGT+TGG 0.636269 4_1:-11752574 Msa0535450:CDS
GGGTGCAGGTGAACCAACAA+AGG 0.644031 4_1:-11750456 Msa0535450:CDS
GACCTAGCATCAAAACCTGA+GGG 0.644948 4_1:-11750476 Msa0535450:CDS
CCTGGGTTTGATCCAACCAA+AGG 0.647766 4_1:-11753420 Msa0535450:CDS
AGAGACAGACAGTGTGTACG+TGG 0.648055 4_1:+11755441 None:intergenic
ATGTGATTATTGTCTAACAA+TGG 0.650932 4_1:-11750359 Msa0535450:three_prime_UTR
TGACCTAGCATCAAAACCTG+AGG 0.657872 4_1:-11750477 Msa0535450:CDS
ACACTCAATGGATACTGATG+AGG 0.661704 4_1:+11755343 None:intergenic
AGCACCAGTAACAAGGACAG+TGG 0.717449 4_1:+11755258 None:intergenic
GGCTTGCTTGATAAAGAAGG+AGG 0.735031 4_1:-11751457 Msa0535450:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAATAAAATAAAATAAAA+TGG + chr4_1:11752573-11752592 None:intergenic 0.0%
!!! ATTTTCAATTTTATTTGAAT+TGG - chr4_1:11750339-11750358 Msa0535450:three_prime_UTR 10.0%
!!! TTTTCAATTTTATTTGAATT+GGG - chr4_1:11750340-11750359 Msa0535450:three_prime_UTR 10.0%
!!! AAATTTTTAATTTACACAAA+GGG + chr4_1:11750977-11750996 None:intergenic 10.0%
!!! TATATTTTAAAAAACTGAAT+CGG - chr4_1:11754857-11754876 Msa0535450:intron 10.0%
!!! TTTCAATTTTATTTGAATTG+GGG - chr4_1:11750341-11750360 Msa0535450:three_prime_UTR 15.0%
!!! GAAATTTTTAATTTACACAA+AGG + chr4_1:11750978-11750997 None:intergenic 15.0%
!!! AAAAGTATTATACACATTTA+AGG + chr4_1:11752340-11752359 None:intergenic 15.0%
!!! TTAAATGTGTATAATACTTT+TGG - chr4_1:11752339-11752358 Msa0535450:intron 15.0%
!! AAAAAAATCTAAGCATATAT+AGG - chr4_1:11753736-11753755 Msa0535450:intron 15.0%
!! AAAAAATCTAAGCATATATA+GGG - chr4_1:11753737-11753756 Msa0535450:intron 15.0%
!! ATCAAATGATAAAAGAAAAA+TGG + chr4_1:11754533-11754552 None:intergenic 15.0%
!!! GTTTTTTAAAATATAGTCAT+TGG + chr4_1:11754852-11754871 None:intergenic 15.0%
!! AAGAAATATTAAGATTTGTA+TGG + chr4_1:11755370-11755389 None:intergenic 15.0%
!! TTGAATTGAATTGAATTTGA+TGG + chr4_1:11750138-11750157 None:intergenic 20.0%
!! TTCAATTCAATTCAATTCAA+TGG - chr4_1:11750143-11750162 Msa0535450:three_prime_UTR 20.0%
!!! TGAGAATTTTCTCAAATTAA+AGG - chr4_1:11750376-11750395 Msa0535450:three_prime_UTR 20.0%
!! CATTTGTAACAATATTTGAA+AGG + chr4_1:11751035-11751054 None:intergenic 20.0%
!! GAAAATAAAATAAGCGTAAA+GGG + chr4_1:11751072-11751091 None:intergenic 20.0%
!! TGAAAATAAAATAAGCGTAA+AGG + chr4_1:11751073-11751092 None:intergenic 20.0%
!!! GCTTATTTTATTTTCAAACA+TGG - chr4_1:11751077-11751096 Msa0535450:intron 20.0%
!!! TTATTTTCAAACATGGAAAA+AGG - chr4_1:11751084-11751103 Msa0535450:intron 20.0%
!! CTACAGAAAAATTACAAATA+GGG - chr4_1:11751220-11751239 Msa0535450:intron 20.0%
!! TATTCTACTTCAATAATAGT+CGG + chr4_1:11751331-11751350 None:intergenic 20.0%
!! TACCAAAAATAGTACTTATT+AGG - chr4_1:11751452-11751471 Msa0535450:CDS 20.0%
!!! TTCCTAATAAGTACTATTTT+TGG + chr4_1:11751457-11751476 None:intergenic 20.0%
!! AAAATATTCTTAGCATACAT+AGG + chr4_1:11752113-11752132 None:intergenic 20.0%
!! GATCATTATATTATTGTGTT+TGG + chr4_1:11752472-11752491 None:intergenic 20.0%
!!! GAATTTTTTTAAAGTTTACC+AGG + chr4_1:11752773-11752792 None:intergenic 20.0%
!! TTTAAAAAAATTCCTAACCA+AGG - chr4_1:11752780-11752799 Msa0535450:intron 20.0%
!! AAATGAAGTAACTAAAGTAT+TGG + chr4_1:11752972-11752991 None:intergenic 20.0%
!!! TTTCATAGTCTTAGAATTTT+CGG - chr4_1:11752989-11753008 Msa0535450:intron 20.0%
!! TATAGTTTCATATTAATTGC+AGG - chr4_1:11753111-11753130 Msa0535450:intron 20.0%
!!! AACTTCTATATGTTTTAACA+AGG + chr4_1:11753214-11753233 None:intergenic 20.0%
!!! TAAAAAACTTTTAGAATACC+TGG - chr4_1:11753417-11753436 Msa0535450:CDS 20.0%
!!! AATAGTGATTTGTTCAAATT+CGG + chr4_1:11753561-11753580 None:intergenic 20.0%
!! ATATTATCTCTTATAGAACT+TGG - chr4_1:11754101-11754120 Msa0535450:intron 20.0%
!! TATTATCTCTTATAGAACTT+GGG - chr4_1:11754102-11754121 Msa0535450:intron 20.0%
!!! ATAATTTTGGGATGTTTTTT+TGG + chr4_1:11754162-11754181 None:intergenic 20.0%
!! AAATGATAAAAGAAAAATGG+CGG + chr4_1:11754530-11754549 None:intergenic 20.0%
!!! TATATCTAACTTATTTCTGA+AGG + chr4_1:11755156-11755175 None:intergenic 20.0%
!! TTCAGAAATAAGTTAGATAT+AGG - chr4_1:11755155-11755174 Msa0535450:intron 20.0%
! AAAACAAAAACAACACTCAA+TGG + chr4_1:11750111-11750130 None:intergenic 25.0%
!!! TTTGTTTTGTTACAGAATTG+AGG - chr4_1:11750280-11750299 Msa0535450:three_prime_UTR 25.0%
! TTAACATACCAAAATGTTAC+TGG - chr4_1:11750604-11750623 Msa0535450:intron 25.0%
! TAACATACCAAAATGTTACT+GGG - chr4_1:11750605-11750624 Msa0535450:intron 25.0%
!! TCTTGGATTAGATATTTCTA+CGG + chr4_1:11750657-11750676 None:intergenic 25.0%
!!! GAACTCTTTCTTTAAAATCT+TGG - chr4_1:11750822-11750841 Msa0535450:intron 25.0%
! TCATATAGTTCAACTAGTTA+AGG - chr4_1:11751130-11751149 Msa0535450:intron 25.0%
! TCTTTGATTAAACAAACGAA+AGG - chr4_1:11751184-11751203 Msa0535450:intron 25.0%
! CTTTGATTAAACAAACGAAA+GGG - chr4_1:11751185-11751204 Msa0535450:intron 25.0%
!! CCTATTTGTAATTTTTCTGT+AGG + chr4_1:11751222-11751241 None:intergenic 25.0%
! CCTACAGAAAAATTACAAAT+AGG - chr4_1:11751219-11751238 Msa0535450:intron 25.0%
! AAAAATTACAAATAGGGAGA+GGG - chr4_1:11751226-11751245 Msa0535450:intron 25.0%
!!! CTATTTTTGGTATAGTAGAT+TGG + chr4_1:11751444-11751463 None:intergenic 25.0%
! AACCTATCATATGAAAAAGT+AGG + chr4_1:11752169-11752188 None:intergenic 25.0%
!! TACACATTTAAGGCATATTT+AGG + chr4_1:11752330-11752349 None:intergenic 25.0%
!! TTGAAGTTTTCAATCTTCTT+AGG - chr4_1:11752382-11752401 Msa0535450:intron 25.0%
! TTTAAAAACATTCCAAATGG+GGG + chr4_1:11752423-11752442 None:intergenic 25.0%
! GTTTAAAAACATTCCAAATG+GGG + chr4_1:11752424-11752443 None:intergenic 25.0%
! CGTTTAAAAACATTCCAAAT+GGG + chr4_1:11752425-11752444 None:intergenic 25.0%
!!! CCATTTGGAATGTTTTTAAA+CGG - chr4_1:11752423-11752442 Msa0535450:intron 25.0%
! GAAAATGAAAACAGAAAACA+TGG + chr4_1:11752505-11752524 None:intergenic 25.0%
!!! AATTTTTAGTTGGGAATCTT+AGG + chr4_1:11752750-11752769 None:intergenic 25.0%
!!! TTTACCAGGAATTTTTAGTT+GGG + chr4_1:11752759-11752778 None:intergenic 25.0%
!!! TTCATAGTCTTAGAATTTTC+GGG - chr4_1:11752990-11753009 Msa0535450:intron 25.0%
! TTTCATATTAATTGCAGGTT+TGG - chr4_1:11753116-11753135 Msa0535450:intron 25.0%
! GTATATTCAAAATAGTTTCC+TGG + chr4_1:11753362-11753381 None:intergenic 25.0%
!!! AGTTTTTTAACTCAATCAAC+TGG + chr4_1:11753406-11753425 None:intergenic 25.0%
! ATATATAGGGAATCTACAAT+TGG - chr4_1:11753750-11753769 Msa0535450:intron 25.0%
!!! GAGCATTTGTTGATAATTTT+GGG + chr4_1:11754174-11754193 None:intergenic 25.0%
! CATAATCATTGAAATTGTAG+TGG - chr4_1:11754216-11754235 Msa0535450:intron 25.0%
! ACAAAATTGACTAAAAAGAG+TGG + chr4_1:11754502-11754521 None:intergenic 25.0%
! TTGAATCTTGAATTACTTTC+AGG - chr4_1:11754559-11754578 Msa0535450:intron 25.0%
! ATGTGATTATTGTCTAACAA+TGG - chr4_1:11755080-11755099 Msa0535450:intron 25.0%
! TTTCTTTGATACTATTCTTG+TGG - chr4_1:11755384-11755403 Msa0535450:CDS 25.0%
!!! ACACGTAGCTTTTTTTATAT+AGG + chr4_1:11755440-11755459 None:intergenic 25.0%
!! TTGTTGTTTGTTGGTAGTTT+AGG + chr4_1:11750032-11750051 None:intergenic 30.0%
ATTCAATTCAATTCAATGGC+AGG - chr4_1:11750147-11750166 Msa0535450:three_prime_UTR 30.0%
AACATACCAAAATGTTACTG+GGG - chr4_1:11750606-11750625 Msa0535450:intron 30.0%
AATATGTGCTTATGTTATGG+TGG - chr4_1:11750630-11750649 Msa0535450:intron 30.0%
ATATGTGCTTATGTTATGGT+GGG - chr4_1:11750631-11750650 Msa0535450:intron 30.0%
!! GTGACGTTGATTTAAAATCT+TGG + chr4_1:11750674-11750693 None:intergenic 30.0%
! AATTTGACAGTAATTTTCCG+CGG + chr4_1:11750727-11750746 None:intergenic 30.0%
CGGAAAATTACTGTCAAATT+CGG - chr4_1:11750727-11750746 Msa0535450:intron 30.0%
! AGATAAAAAGCACAAAACCA+TGG - chr4_1:11750789-11750808 Msa0535450:intron 30.0%
!! GATTTTAAAGAAAGAGTTCG+CGG + chr4_1:11750821-11750840 None:intergenic 30.0%
! TTCACACTGATTAGTGTTAT+TGG + chr4_1:11750941-11750960 None:intergenic 30.0%
TGTGTGAAATTCAGTCTATA+AGG - chr4_1:11751004-11751023 Msa0535450:intron 30.0%
GAAAAATTACAAATAGGGAG+AGG - chr4_1:11751225-11751244 Msa0535450:intron 30.0%
TATGATGTTCACATTATCCT+TGG + chr4_1:11751304-11751323 None:intergenic 30.0%
TTCTAAACATGAAAGCAAGT+TGG - chr4_1:11751381-11751400 Msa0535450:CDS 30.0%
AGCGATACATTTATTACTTG+AGG + chr4_1:11751553-11751572 None:intergenic 30.0%
! TATACTACTAGTAGAAGTAC+AGG + chr4_1:11751633-11751652 None:intergenic 30.0%
TCTACTAGTAGTATATGACT+TGG - chr4_1:11751638-11751657 Msa0535450:intron 30.0%
!!! GATTTGTTGGTTAACTTTTC+AGG - chr4_1:11751794-11751813 Msa0535450:intron 30.0%
GAAGAAAGCAAACAGAAAAT+TGG - chr4_1:11751884-11751903 Msa0535450:intron 30.0%
!! GTGCTGATGATATTTTCATT+GGG - chr4_1:11751909-11751928 Msa0535450:intron 30.0%
! TGCTGATGATATTTTCATTG+GGG - chr4_1:11751910-11751929 Msa0535450:intron 30.0%
!!! GACCTACTTTTTCATATGAT+AGG - chr4_1:11752164-11752183 Msa0535450:intron 30.0%
!! TTTTCATATGATAGGTTGAC+TGG - chr4_1:11752172-11752191 Msa0535450:intron 30.0%
CAGAAAAATCAAATAGATGC+TGG - chr4_1:11752201-11752220 Msa0535450:intron 30.0%
TTCTATCCATTACTCATATG+CGG - chr4_1:11752238-11752257 Msa0535450:intron 30.0%
TTCAATCTTCTTAGGATTCT+TGG - chr4_1:11752390-11752409 Msa0535450:intron 30.0%
CCGTTTAAAAACATTCCAAA+TGG + chr4_1:11752426-11752445 None:intergenic 30.0%
TCGTGAATAATTGCGATAAA+GGG + chr4_1:11752684-11752703 None:intergenic 30.0%
!!! GTTTACCAGGAATTTTTAGT+TGG + chr4_1:11752760-11752779 None:intergenic 30.0%
TTTGGGAAATGGAAATATAC+TGG - chr4_1:11752931-11752950 Msa0535450:intron 30.0%
TGGATATCAAGATAATATCG+CGG + chr4_1:11753386-11753405 None:intergenic 30.0%
TTCAAACCATTGTCAATAAG+TGG - chr4_1:11753602-11753621 Msa0535450:CDS 30.0%
ATTTCAATGTACTTTGTTGC+TGG - chr4_1:11753886-11753905 Msa0535450:intron 30.0%
!!! TCTAGGTATGGTTTTAGTTT+CGG + chr4_1:11754052-11754071 None:intergenic 30.0%
!!! CGAGCATTTGTTGATAATTT+TGG + chr4_1:11754175-11754194 None:intergenic 30.0%
TTGATTGCATTTGTCTCATA+TGG - chr4_1:11754300-11754319 Msa0535450:intron 30.0%
!! ACTACAGATCTGTATTGATT+GGG + chr4_1:11754378-11754397 None:intergenic 30.0%
! CACTTTCTAGTAAAAACAAG+TGG + chr4_1:11754621-11754640 None:intergenic 30.0%
TCAAGGTTCATATTGTGAAT+TGG + chr4_1:11754712-11754731 None:intergenic 30.0%
! CTTGATTTGATAACCATGTA+GGG - chr4_1:11754727-11754746 Msa0535450:intron 30.0%
!! TGATTATACTATAGCCTTGT+TGG + chr4_1:11754779-11754798 None:intergenic 30.0%
TTATGAGGAGACTAAATTCA+AGG - chr4_1:11754935-11754954 Msa0535450:intron 30.0%
TCAAAAACGAGAATTGATCT+GGG + chr4_1:11755027-11755046 None:intergenic 30.0%
ATCAAAAACGAGAATTGATC+TGG + chr4_1:11755028-11755047 None:intergenic 30.0%
!!! TCGTTTTTGATTTCGAATGT+GGG - chr4_1:11755037-11755056 Msa0535450:intron 30.0%
AGATAAGCACTAATGACTTT+GGG + chr4_1:11755114-11755133 None:intergenic 30.0%
!! TGTTGGTAGTTTAGGAACAT+TGG + chr4_1:11750024-11750043 None:intergenic 35.0%
!! AAGAGGTTGTTGTTGTTTGT+TGG + chr4_1:11750041-11750060 None:intergenic 35.0%
TTCTGGATTATGTTGTGAAG+AGG + chr4_1:11750058-11750077 None:intergenic 35.0%
TTGGTATGTTAAACCCACTT+GGG + chr4_1:11750596-11750615 None:intergenic 35.0%
TTTGGTATGTTAAACCCACT+TGG + chr4_1:11750597-11750616 None:intergenic 35.0%
ACATACCAAAATGTTACTGG+GGG - chr4_1:11750607-11750626 Msa0535450:intron 35.0%
! ATATTCCCCCAGTAACATTT+TGG + chr4_1:11750615-11750634 None:intergenic 35.0%
GGGAATATGTGCTTATGTTA+TGG - chr4_1:11750627-11750646 Msa0535450:intron 35.0%
TAGAAATCCATCAAAGTCGT+AGG - chr4_1:11750855-11750874 Msa0535450:intron 35.0%
TTATCCTTGGCAAAGACTAT+AGG + chr4_1:11751291-11751310 None:intergenic 35.0%
AGATGAAGCAAACTCAAAAG+TGG - chr4_1:11751516-11751535 Msa0535450:intron 35.0%
TCCGTTCTAATACAATAGTG+AGG - chr4_1:11751721-11751740 Msa0535450:intron 35.0%
CCCTCACTATTGTATTAGAA+CGG + chr4_1:11751725-11751744 None:intergenic 35.0%
CCGTTCTAATACAATAGTGA+GGG - chr4_1:11751722-11751741 Msa0535450:intron 35.0%
! GAACTCTCAATGTGATTTGT+TGG - chr4_1:11751781-11751800 Msa0535450:intron 35.0%
GAAAGCAAACAGAAAATTGG+TGG - chr4_1:11751887-11751906 Msa0535450:intron 35.0%
!!! GGTGCTGATGATATTTTCAT+TGG - chr4_1:11751908-11751927 Msa0535450:intron 35.0%
AATTGCAGGAACAATGCTTT+CGG + chr4_1:11751948-11751967 None:intergenic 35.0%
CCATCATCGAAATAAAACTC+AGG + chr4_1:11752052-11752071 None:intergenic 35.0%
!!! CCTGAGTTTTATTTCGATGA+TGG - chr4_1:11752049-11752068 Msa0535450:intron 35.0%
! ATATGATAGGTTGACTGGAT+TGG - chr4_1:11752177-11752196 Msa0535450:intron 35.0%
! TATGATAGGTTGACTGGATT+GGG - chr4_1:11752178-11752197 Msa0535450:intron 35.0%
!! TGAGTAATGGATAGAAAGCA+TGG + chr4_1:11752234-11752253 None:intergenic 35.0%
GCATATTTAGGAATCAAGAC+TGG + chr4_1:11752318-11752337 None:intergenic 35.0%
TAATTGCGATAAAGGGAAGA+CGG + chr4_1:11752677-11752696 None:intergenic 35.0%
GTCGTGAATAATTGCGATAA+AGG + chr4_1:11752685-11752704 None:intergenic 35.0%
TACTTCCTAAATTGCTAGCA+AGG + chr4_1:11752720-11752739 None:intergenic 35.0%
CTAGCAATTTAGGAAGTAAG+CGG - chr4_1:11752722-11752741 Msa0535450:intron 35.0%
TAGCAATTTAGGAAGTAAGC+GGG - chr4_1:11752723-11752742 Msa0535450:intron 35.0%
GATTCCCAACTAAAAATTCC+TGG - chr4_1:11752752-11752771 Msa0535450:intron 35.0%
TTTATCTCCATGAACAGCTA+AGG - chr4_1:11752838-11752857 Msa0535450:intron 35.0%
!! TGAAGCATATTGTGTTGGTT+GGG - chr4_1:11752870-11752889 Msa0535450:intron 35.0%
AACTGTTCAAAGGATGGTTA+GGG + chr4_1:11752913-11752932 None:intergenic 35.0%
AAACTGTTCAAAGGATGGTT+AGG + chr4_1:11752914-11752933 None:intergenic 35.0%
TAACCATCCTTTGAACAGTT+TGG - chr4_1:11752913-11752932 Msa0535450:intron 35.0%
AACCATCCTTTGAACAGTTT+GGG - chr4_1:11752914-11752933 Msa0535450:intron 35.0%
GAAGAATATCTGTCCAATTC+TGG - chr4_1:11753151-11753170 Msa0535450:intron 35.0%
GGTTCAGCTATGATTACTAA+AGG + chr4_1:11753341-11753360 None:intergenic 35.0%
TTAGTAATCATAGCTGAACC+AGG - chr4_1:11753341-11753360 Msa0535450:intron 35.0%
CTATAGCCACTTATTGACAA+TGG + chr4_1:11753611-11753630 None:intergenic 35.0%
! TCTACATAGTTTGTCGATCA+CGG + chr4_1:11753686-11753705 None:intergenic 35.0%
CGACAAACTATGTAGATACT+TGG - chr4_1:11753690-11753709 Msa0535450:intron 35.0%
TACGTACTCATCTAATTGCT+TGG - chr4_1:11753802-11753821 Msa0535450:intron 35.0%
ACGTACTCATCTAATTGCTT+GGG - chr4_1:11753803-11753822 Msa0535450:intron 35.0%
!! TTGATAAAGAAGGAGGTGTT+CGG - chr4_1:11753989-11754008 Msa0535450:intron 35.0%
!! TTTTTGGTATCAGTGGAAGT+TGG + chr4_1:11754146-11754165 None:intergenic 35.0%
!!! GGATGTTTTTTTGGTATCAG+TGG + chr4_1:11754153-11754172 None:intergenic 35.0%
AAATGCTCGAGTGAATCATA+TGG - chr4_1:11754186-11754205 Msa0535450:intron 35.0%
! TGGCTCGTGAATTTGTTTAT+TGG - chr4_1:11754236-11754255 Msa0535450:intron 35.0%
! CACTACAGATCTGTATTGAT+TGG + chr4_1:11754379-11754398 None:intergenic 35.0%
AATTGACTAAAAAGAGTGGC+AGG + chr4_1:11754498-11754517 None:intergenic 35.0%
CTAGTAAAAACAAGTGGCAT+AGG + chr4_1:11754615-11754634 None:intergenic 35.0%
CCTACATGGTTATCAAATCA+AGG + chr4_1:11754729-11754748 None:intergenic 35.0%
! CCTTGATTTGATAACCATGT+AGG - chr4_1:11754726-11754745 Msa0535450:intron 35.0%
TAACCATGTAGGGAAATATC+AGG - chr4_1:11754737-11754756 Msa0535450:intron 35.0%
CTATATTCAGAGATCCAACA+AGG - chr4_1:11754762-11754781 Msa0535450:intron 35.0%
GAATCGGTTATTGTGAGATT+TGG - chr4_1:11754873-11754892 Msa0535450:intron 35.0%
!! CTTCATCTTGTTGATTTGAC+AGG - chr4_1:11754905-11754924 Msa0535450:intron 35.0%
TTGACAGGCACTAAATTATG+AGG - chr4_1:11754920-11754939 Msa0535450:intron 35.0%
!!! CTCGTTTTTGATTTCGAATG+TGG - chr4_1:11755036-11755055 Msa0535450:intron 35.0%
CAGATAAGCACTAATGACTT+TGG + chr4_1:11755115-11755134 None:intergenic 35.0%
AGACTTCAATGAGTGATTTC+AGG - chr4_1:11755187-11755206 Msa0535450:intron 35.0%
GGAAAGATTGTATGATCAAG+AGG + chr4_1:11755349-11755368 None:intergenic 35.0%
ATACTATTCTTGTGGCATTC+TGG - chr4_1:11755392-11755411 Msa0535450:CDS 35.0%
CGATGAAGAAAAGAAGGTTC+TGG + chr4_1:11750075-11750094 None:intergenic 40.0%
TGAGGACGATGAAGAAAAGA+AGG + chr4_1:11750081-11750100 None:intergenic 40.0%
ACACTCAATGGATACTGATG+AGG + chr4_1:11750099-11750118 None:intergenic 40.0%
!! TTCTCCCTTGGTGTCAATTT+GGG + chr4_1:11750511-11750530 None:intergenic 40.0%
!! ATTCTCCCTTGGTGTCAATT+TGG + chr4_1:11750512-11750531 None:intergenic 40.0%
TATGTTAAACCCACTTGGGT+TGG + chr4_1:11750592-11750611 None:intergenic 40.0%
AAAGCACAAAACCATGGCAA+CGG - chr4_1:11750795-11750814 Msa0535450:intron 40.0%
AATGTCACCTACGACTTTGA+TGG + chr4_1:11750865-11750884 None:intergenic 40.0%
TGTGTGATCTCCTAGTTACA+CGG - chr4_1:11750915-11750934 Msa0535450:intron 40.0%
! TTTTTCTGTAGGCTGTGTTC+AGG + chr4_1:11751211-11751230 None:intergenic 40.0%
AGACTATAGGAACTAGATGC+TGG + chr4_1:11751278-11751297 None:intergenic 40.0%
AGTTCCTATAGTCTTTGCCA+AGG - chr4_1:11751284-11751303 Msa0535450:intron 40.0%
GAGAGAGATGAAATAGATCG+AGG - chr4_1:11751490-11751509 Msa0535450:intron 40.0%
CCAAACCTCTGGCAATATAT+TGG + chr4_1:11751856-11751875 None:intergenic 40.0%
CCAATATATTGCCAGAGGTT+TGG - chr4_1:11751853-11751872 Msa0535450:intron 40.0%
TTCTGATCTAACCAAACCTC+TGG + chr4_1:11751867-11751886 None:intergenic 40.0%
AGCATTGTTCCTGCAATTCA+AGG - chr4_1:11751950-11751969 Msa0535450:intron 40.0%
CAAACCCAGGTTTCATTTGT+GGG + chr4_1:11752009-11752028 None:intergenic 40.0%
TCAAACCCAGGTTTCATTTG+TGG + chr4_1:11752010-11752029 None:intergenic 40.0%
AATAGCATTAGCACCTGTTC+AGG + chr4_1:11752082-11752101 None:intergenic 40.0%
TTCCACCTTGCTAGCAATTT+AGG - chr4_1:11752712-11752731 Msa0535450:intron 40.0%
TTCCTAAATTGCTAGCAAGG+TGG + chr4_1:11752717-11752736 None:intergenic 40.0%
AGCAATTTAGGAAGTAAGCG+GGG - chr4_1:11752724-11752743 Msa0535450:intron 40.0%
AGTGAGTAATGACCTTGGTT+AGG + chr4_1:11752795-11752814 None:intergenic 40.0%
GCATTAGTGAGTAATGACCT+TGG + chr4_1:11752800-11752819 None:intergenic 40.0%
AGGAGTGAAGCATATTGTGT+TGG - chr4_1:11752865-11752884 Msa0535450:intron 40.0%
! GTGAAGCATATTGTGTTGGT+TGG - chr4_1:11752869-11752888 Msa0535450:intron 40.0%
!! TATTGTGTTGGTTGGGTCTA+TGG - chr4_1:11752877-11752896 Msa0535450:intron 40.0%
!! ATTGTGTTGGTTGGGTCTAT+GGG - chr4_1:11752878-11752897 Msa0535450:intron 40.0%
TTCCCAAACTGTTCAAAGGA+TGG + chr4_1:11752919-11752938 None:intergenic 40.0%
CCATTTCCCAAACTGTTCAA+AGG + chr4_1:11752923-11752942 None:intergenic 40.0%
CCTTTGAACAGTTTGGGAAA+TGG - chr4_1:11752920-11752939 Msa0535450:intron 40.0%
CAATTCTGGTGTTCCATACA+CGG - chr4_1:11753165-11753184 Msa0535450:intron 40.0%
! TGTTTTCACATTCCCAAACC+TGG - chr4_1:11753253-11753272 Msa0535450:CDS 40.0%
!! ATACCTGGTGTCATTATCTG+TGG - chr4_1:11753432-11753451 Msa0535450:CDS 40.0%
TTTCCACAGATAATGACACC+AGG + chr4_1:11753438-11753457 None:intergenic 40.0%
GCAACACTACAGTACTATAG+CGG + chr4_1:11753639-11753658 None:intergenic 40.0%
GCTATAGTACTGTAGTGTTG+CGG - chr4_1:11753638-11753657 Msa0535450:intron 40.0%
TTGTCGATCACGGAAAATAG+TGG + chr4_1:11753676-11753695 None:intergenic 40.0%
!! TGATAAAGAAGGAGGTGTTC+GGG - chr4_1:11753990-11754009 Msa0535450:intron 40.0%
TCTGCTCATGAATCTCATCT+TGG - chr4_1:11754408-11754427 Msa0535450:intron 40.0%
GTTCCTGATATTTCCCTACA+TGG + chr4_1:11754743-11754762 None:intergenic 40.0%
TGAACCAACAAAGGACTTCA+AGG - chr4_1:11754992-11755011 Msa0535450:intron 40.0%
AAAGCCTTGAAGTCCTTTGT+TGG + chr4_1:11754999-11755018 None:intergenic 40.0%
GATCAAGAGGCAAAAACTCT+AGG + chr4_1:11755336-11755355 None:intergenic 40.0%
CAAACCACTGTCCTTGTTAC+TGG - chr4_1:11750177-11750196 Msa0535450:three_prime_UTR 45.0%
TCCACCCAAATTGACACCAA+GGG - chr4_1:11750504-11750523 Msa0535450:CDS 45.0%
!! TATTGGTTTGGGACCTCAGA+GGG + chr4_1:11750561-11750580 None:intergenic 45.0%
!! TGGCATGGTGGTATTGGTTT+GGG + chr4_1:11750572-11750591 None:intergenic 45.0%
!! TTGGCATGGTGGTATTGGTT+TGG + chr4_1:11750573-11750592 None:intergenic 45.0%
TCTTGAATCTCTTGATGCCG+CGG - chr4_1:11750707-11750726 Msa0535450:intron 45.0%
! GTGTTATTGGCCGTGTAACT+AGG + chr4_1:11750928-11750947 None:intergenic 45.0%
ATAGGGAGAGGGAACAGATT+TGG - chr4_1:11751237-11751256 Msa0535450:intron 45.0%
ATAGGAACTAGATGCTGGCA+GGG + chr4_1:11751273-11751292 None:intergenic 45.0%
TATAGGAACTAGATGCTGGC+AGG + chr4_1:11751274-11751293 None:intergenic 45.0%
GCATCTGTACCTTGAATTGC+AGG + chr4_1:11751962-11751981 None:intergenic 45.0%
CTGTCCCACAAATGAAACCT+GGG - chr4_1:11752002-11752021 Msa0535450:intron 45.0%
TTGATCCAACCAAAGGTGGA+AGG - chr4_1:11752026-11752045 Msa0535450:intron 45.0%
! TGATGGTGCATATCCTGAAC+AGG - chr4_1:11752066-11752085 Msa0535450:intron 45.0%
CAAACGCCGCATATGAGTAA+TGG + chr4_1:11752247-11752266 None:intergenic 45.0%
CATTACTCATATGCGGCGTT+TGG - chr4_1:11752245-11752264 Msa0535450:intron 45.0%
TAAAGGGAAGACGGAAAGCA+AGG + chr4_1:11752668-11752687 None:intergenic 45.0%
CGTGTATGGAACACCAGAAT+TGG + chr4_1:11753167-11753186 None:intergenic 45.0%
GTGTTCCATACACGGTCATA+AGG - chr4_1:11753173-11753192 Msa0535450:intron 45.0%
GTGTACCTTATGACCGTGTA+TGG + chr4_1:11753181-11753200 None:intergenic 45.0%
! TTTTGACCTGTGCAATGCAC+AGG + chr4_1:11753291-11753310 None:intergenic 45.0%
CAGGTCTGAATCAACAAGGA+AGG + chr4_1:11753960-11753979 None:intergenic 45.0%
!! CTTCCTTGTTGATTCAGACC+TGG - chr4_1:11753958-11753977 Msa0535450:intron 45.0%
TCTTTATCAAGCAAGCCACC+AGG + chr4_1:11753979-11753998 None:intergenic 45.0%
!! GGTGGCTTGCTTGATAAAGA+AGG - chr4_1:11753979-11753998 Msa0535450:intron 45.0%
! GGCTTGCTTGATAAAGAAGG+AGG - chr4_1:11753982-11754001 Msa0535450:intron 45.0%
GTGTTCGGGAACTCATTGTA+GGG - chr4_1:11754004-11754023 Msa0535450:intron 45.0%
!! TGCTACATCAGCTCTAGGTA+TGG + chr4_1:11754064-11754083 None:intergenic 45.0%
ACTTCTGCTACATCAGCTCT+AGG + chr4_1:11754069-11754088 None:intergenic 45.0%
TGTAGCAGAAGTCTGTGTTC+AGG - chr4_1:11754077-11754096 Msa0535450:intron 45.0%
GGCAGGACACGTTAAAGTTT+AGG + chr4_1:11754481-11754500 None:intergenic 45.0%
TGACCTAGCATCAAAACCTG+AGG - chr4_1:11754962-11754981 Msa0535450:intron 45.0%
GACCTAGCATCAAAACCTGA+GGG - chr4_1:11754963-11754982 Msa0535450:intron 45.0%
!!! AAATAAAAAATAAAACATTT+TGG + chr4_1:11750466-11750485 None:intergenic 5.0%
AGAGACAGACAGTGTGTACG+TGG + chr4_1:11750001-11750020 None:intergenic 50.0%
AGCACCAGTAACAAGGACAG+TGG + chr4_1:11750184-11750203 None:intergenic 50.0%
ACTGTCCTTGTTACTGGTGC+TGG - chr4_1:11750183-11750202 Msa0535450:three_prime_UTR 50.0%
GTCCACCCAAATTGACACCA+AGG - chr4_1:11750503-11750522 Msa0535450:CDS 50.0%
!! TCCCTTGGTGTCAATTTGGG+TGG + chr4_1:11750508-11750527 None:intergenic 50.0%
! TCTCTGGTTCGATTCTCCCT+TGG + chr4_1:11750523-11750542 None:intergenic 50.0%
!! GTATTGGTTTGGGACCTCAG+AGG + chr4_1:11750562-11750581 None:intergenic 50.0%
!! TTGGGTTGGCATGGTGGTAT+TGG + chr4_1:11750578-11750597 None:intergenic 50.0%
!! TAAACCCACTTGGGTTGGCA+TGG + chr4_1:11750587-11750606 None:intergenic 50.0%
GGAGAGGGAACAGATTTGGA+GGG - chr4_1:11751241-11751260 Msa0535450:intron 50.0%
CGCGACCAATATATTGCCAG+AGG - chr4_1:11751848-11751867 Msa0535450:intron 50.0%
GCTGTCCCACAAATGAAACC+TGG - chr4_1:11752001-11752020 Msa0535450:intron 50.0%
CCTTTGGTTGGATCAAACCC+AGG + chr4_1:11752022-11752041 None:intergenic 50.0%
CCTGGGTTTGATCCAACCAA+AGG - chr4_1:11752019-11752038 Msa0535450:intron 50.0%
GGGTTTGATCCAACCAAAGG+TGG - chr4_1:11752022-11752041 Msa0535450:intron 50.0%
AAACTCAGGCCTTCCACCTT+TGG + chr4_1:11752038-11752057 None:intergenic 50.0%
CTTGGATTCTCACCCCCATT+TGG - chr4_1:11752408-11752427 Msa0535450:intron 50.0%
TAGGTGGTCTGTCCAGGTTT+GGG + chr4_1:11753268-11753287 None:intergenic 50.0%
CCACCAGGTCTGAATCAACA+AGG + chr4_1:11753964-11753983 None:intergenic 50.0%
!! CCTTGTTGATTCAGACCTGG+TGG - chr4_1:11753961-11753980 Msa0535450:intron 50.0%
GGTGTTCGGGAACTCATTGT+AGG - chr4_1:11754003-11754022 Msa0535450:intron 50.0%
TCGGGAACTCATTGTAGGGA+AGG - chr4_1:11754008-11754027 Msa0535450:intron 50.0%
!! CACCCTCAGGTTTTGATGCT+AGG + chr4_1:11754968-11754987 None:intergenic 50.0%
! GTCCTTGTTACTGGTGCTGG+TGG - chr4_1:11750186-11750205 Msa0535450:three_prime_UTR 55.0%
GACCACCAGCACCAGTAACA+AGG + chr4_1:11750191-11750210 None:intergenic 55.0%
TCGAACCAGAGACCTCGAAG+AGG - chr4_1:11750531-11750550 Msa0535450:intron 55.0%
TACCACCATGCCAACCCAAG+TGG - chr4_1:11750579-11750598 Msa0535450:intron 55.0%
ACCACCATGCCAACCCAAGT+GGG - chr4_1:11750580-11750599 Msa0535450:intron 55.0%
GGGAGAGGGAACAGATTTGG+AGG - chr4_1:11751240-11751259 Msa0535450:intron 55.0%
TCAGGCCTTCCACCTTTGGT+TGG + chr4_1:11752034-11752053 None:intergenic 55.0%
GGGAAGACGGAAAGCAAGGT+AGG + chr4_1:11752664-11752683 None:intergenic 55.0%
CCTGCAGCCTTAGCTGTTCA+TGG + chr4_1:11752848-11752867 None:intergenic 55.0%
CCATGAACAGCTAAGGCTGC+AGG - chr4_1:11752845-11752864 Msa0535450:intron 55.0%
!! GTGTTGGTTGGGTCTATGGG+TGG - chr4_1:11752881-11752900 Msa0535450:intron 55.0%
GTAGGTGGTCTGTCCAGGTT+TGG + chr4_1:11753269-11753288 None:intergenic 55.0%
CTGTGCAATGCACAGGTAGG+TGG + chr4_1:11753284-11753303 None:intergenic 55.0%
CACCTACCTGTGCATTGCAC+AGG - chr4_1:11753282-11753301 Msa0535450:intron 55.0%
GACCTGTGCAATGCACAGGT+AGG + chr4_1:11753287-11753306 None:intergenic 55.0%
! GCATCAAAACCTGAGGGTGC+AGG - chr4_1:11754969-11754988 Msa0535450:intron 55.0%
GGGTGCAGGTGAACCAACAA+AGG - chr4_1:11754983-11755002 Msa0535450:intron 55.0%
GTGCTCCTCTTCGAGGTCTC+TGG + chr4_1:11750539-11750558 None:intergenic 60.0%
!! TCAGAGGGTGCTCCTCTTCG+AGG + chr4_1:11750546-11750565 None:intergenic 60.0%
!! TCGAAGAGGAGCACCCTCTG+AGG - chr4_1:11750545-11750564 Msa0535450:intron 60.0%
!! ACCCACTTGGGTTGGCATGG+TGG + chr4_1:11750584-11750603 None:intergenic 60.0%
CACAGGTAGGTGGTCTGTCC+AGG + chr4_1:11753274-11753293 None:intergenic 60.0%
! GTTGGTTCACCTGCACCCTC+AGG + chr4_1:11754981-11755000 None:intergenic 60.0%
!! ACTGGTGCTGGTGGTCGCAC+AGG - chr4_1:11750195-11750214 Msa0535450:three_prime_UTR 65.0%
AGAGTTCGCGGCCGTTGCCA+TGG + chr4_1:11750809-11750828 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 11749987 11755474 11749987 ID=Msa0535450;Name=Msa0535450
chr4_1 mRNA 11749987 11755474 11749987 ID=Msa0535450-mRNA-1;Parent=Msa0535450;Name=Msa0535450-mRNA-1;_AED=0.05;_eAED=0.05;_QI=37|1|1|1|1|1|7|428|301
chr4_1 exon 11749987 11750534 11749987 ID=Msa0535450-mRNA-1:exon:3772;Parent=Msa0535450-mRNA-1
chr4_1 exon 11751363 11751486 11751363 ID=Msa0535450-mRNA-1:exon:3771;Parent=Msa0535450-mRNA-1
chr4_1 exon 11752267 11752328 11752267 ID=Msa0535450-mRNA-1:exon:3770;Parent=Msa0535450-mRNA-1
chr4_1 exon 11752509 11752606 11752509 ID=Msa0535450-mRNA-1:exon:3769;Parent=Msa0535450-mRNA-1
chr4_1 exon 11753239 11753275 11753239 ID=Msa0535450-mRNA-1:exon:3768;Parent=Msa0535450-mRNA-1
chr4_1 exon 11753374 11753645 11753374 ID=Msa0535450-mRNA-1:exon:3767;Parent=Msa0535450-mRNA-1
chr4_1 exon 11755245 11755474 11755245 ID=Msa0535450-mRNA-1:exon:3766;Parent=Msa0535450-mRNA-1
chr4_1 five_prime_UTR 11755438 11755474 11755438 ID=Msa0535450-mRNA-1:five_prime_utr;Parent=Msa0535450-mRNA-1
chr4_1 CDS 11755245 11755437 11755245 ID=Msa0535450-mRNA-1:cds;Parent=Msa0535450-mRNA-1
chr4_1 CDS 11753374 11753645 11753374 ID=Msa0535450-mRNA-1:cds;Parent=Msa0535450-mRNA-1
chr4_1 CDS 11753239 11753275 11753239 ID=Msa0535450-mRNA-1:cds;Parent=Msa0535450-mRNA-1
chr4_1 CDS 11752509 11752606 11752509 ID=Msa0535450-mRNA-1:cds;Parent=Msa0535450-mRNA-1
chr4_1 CDS 11752267 11752328 11752267 ID=Msa0535450-mRNA-1:cds;Parent=Msa0535450-mRNA-1
chr4_1 CDS 11751363 11751486 11751363 ID=Msa0535450-mRNA-1:cds;Parent=Msa0535450-mRNA-1
chr4_1 CDS 11750415 11750534 11750415 ID=Msa0535450-mRNA-1:cds;Parent=Msa0535450-mRNA-1
chr4_1 three_prime_UTR 11749987 11750414 11749987 ID=Msa0535450-mRNA-1:three_prime_utr;Parent=Msa0535450-mRNA-1
Gene Sequence

>Msa0535450

ATGTTCCTAAACTACCAACAAACAACAACAACCTCTTCACAACATAATCCAGAACCTTCTTTTCTTCATCGTCCTCATCAGTATCCATTGAGTGTTGTTTTTGTTTTGTCTCCATCAAATTCAATTCAATTCAATTCAATGGCAGGTTCATCTCAAACCACTGTCCTTGTTACTGGTGCTGGTGGTCGCACAGGACAAATTGTGTATAAAAAGTTAAAAGAGAAGCGCGACCAATATATTGCCAGAGGTTTGGTTAGATCAGAAGAAAGCAAACAGAAAATTGGTGGTGCTGATGATATTTTCATTGGGGATATCAGAAATGCCGAAAGCATTGTTCCTGCAATTCAAGGTACAGATGCTCTCATCATTCTCACTAGTGCTGTCCCACAAATGAAACCTGGGTTTGATCCAACCAAAGGTGGAAGGCCTGAGTTTTATTTCGATGATGGTGCATATCCTGAACAGGTTGACTGGATTGGGCAGAAAAATCAAATAGATGCTGCTAAGGCTGCAGGAGTGAAGCATATTGTGTTGGTTGGGTCTATGGGTGGAACAAACCCTAACCATCCTTTGAACAGTTTGGGAAATGGAAATATACTGGTTTGGAAAAGAAAAGCTGAAGAATATCTGTCCAATTCTGGTGTTCCATACACGGTCATAAGACCTGGTGGCTTGCTTGATAAAGAAGGAGGTGTTCGGGAACTCATTGTAGGGAAGGATGATGAACTTCTTCAGACCGAAACTAAAACCATACCTAGAGCTGATGTAGCAGAAGTCTGTGTTCAGGCACTAAATTATGAGGAGACTAAATTCAAGGCATTTGACCTAGCATCAAAACCTGAGGGTGCAGGTGAACCAACAAAGGACTTCAAGGCTTTGTTTTCCCAGATCAATTCTCGTTTTTGA

Protein sequence

>Msa0535450

MFLNYQQTTTTSSQHNPEPSFLHRPHQYPLSVVFVLSPSNSIQFNSMAGSSQTTVLVTGAGGRTGQIVYKKLKEKRDQYIARGLVRSEESKQKIGGADDIFIGDIRNAESIVPAIQGTDALIILTSAVPQMKPGFDPTKGGRPEFYFDDGAYPEQVDWIGQKNQIDAAKAAGVKHIVLVGSMGGTNPNHPLNSLGNGNILVWKRKAEEYLSNSGVPYTVIRPGGLLDKEGGVRELIVGKDDELLQTETKTIPRADVAEVCVQALNYEETKFKAFDLASKPEGAGEPTKDFKALFSQINSRF*