AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1337190


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1337190 MtrunA17_Chr4g0076301 94.355 124 7 0 1 124 1 124 6.58e-83 238
Msa1337190 MtrunA17_Chr7g0249561 50.649 77 38 0 47 123 54 130 2.02e-21 82.8
Msa1337190 MtrunA17_Chr7g0249801 48.649 74 38 0 47 120 43 116 2.03e-21 82.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1337190 AT5G47630.1 56.693 127 51 1 1 123 1 127 1.09e-42 137
Msa1337190 AT5G47630.2 56.693 127 51 1 1 123 1 127 1.09e-42 137
Msa1337190 AT5G47630.3 56.693 127 51 1 1 123 1 127 1.09e-42 137
Msa1337190 AT1G65290.1 50.649 77 38 0 47 123 50 126 3.52e-21 82.4
Msa1337190 AT2G44620.1 41.000 100 46 1 17 116 29 115 6.34e-21 81.6

Find 34 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCAACAAAACTTCTCTTTA+TGG 0.154842 tig0001514:+12688 Msa1337180:three_prime_UTR
GGATAGGGTTGAGCTTATTA+TGG 0.307345 tig0001514:-12867 Msa1337190:CDS
AGTAAAAGTGAAAATAATAT+TGG 0.326289 tig0001514:+13324 None:intergenic
AGCTTATCTGCTTTCTCATC+AGG 0.361227 tig0001514:+12815 Msa1337180:three_prime_UTR
GCAAAACAATTGAAAAGTTA+TGG 0.376214 tig0001514:+12729 Msa1337180:three_prime_UTR
ATATGCCGACAAAATTTGAT+TGG 0.384777 tig0001514:+14253 None:intergenic
CACTCACTGGGAGATTCGTT+TGG 0.407167 tig0001514:+14230 None:intergenic
TCAGGTGTCATGCTTACATT+GGG 0.419498 tig0001514:+12577 Msa1337180:three_prime_UTR
ATCAGGTGTCATGCTTACAT+TGG 0.439491 tig0001514:+12576 Msa1337180:three_prime_UTR
CATAATCACATTATCATCCT+TGG 0.439969 tig0001514:+13161 Msa1337180:three_prime_UTR
GGACTTAAACCTGGACAGCT+TGG 0.459469 tig0001514:-12888 Msa1337190:CDS
TGATTATGCATTTGAGATGT+TGG 0.460487 tig0001514:-13146 Msa1337190:CDS
TGAGAAGGTCAACTGAAAGA+TGG 0.475010 tig0001514:-13191 Msa1337190:CDS
GTCTAGTATCGGATCAGAGC+TGG 0.475971 tig0001514:+13107 Msa1337180:three_prime_UTR
TGTCATGCTTACATTGGGGT+GGG 0.479726 tig0001514:+12582 Msa1337180:three_prime_UTR
AGATGTTGGTGCTCTTCAGC+AGG 0.487417 tig0001514:-13132 Msa1337190:CDS
CAACCCTATCCAAGCTGTCC+AGG 0.498453 tig0001514:+12879 Msa1337180:three_prime_UTR
TGCCACTTTGAATTAGCACT+TGG 0.508091 tig0001514:-13276 Msa1337190:five_prime_UTR
TTCAATAAAGCATAACTCAA+CGG 0.513754 tig0001514:+12506 Msa1337180:three_prime_UTR
TAAACCTGGACAGCTTGGAT+AGG 0.517739 tig0001514:-12883 Msa1337190:CDS
GTGTCATGCTTACATTGGGG+TGG 0.521344 tig0001514:+12581 Msa1337180:three_prime_UTR
TCTTGACCAGTCTGATTACT+CGG 0.521850 tig0001514:+13085 Msa1337180:three_prime_UTR
AAACCTGGACAGCTTGGATA+GGG 0.522123 tig0001514:-12882 Msa1337190:CDS
CTGATTACTCGGTCTAGTAT+CGG 0.536163 tig0001514:+13096 Msa1337180:three_prime_UTR
GTCATGCTTACATTGGGGTG+GGG 0.536900 tig0001514:+12583 Msa1337180:three_prime_UTR
GGCTATGTACTTTGCAACAT+CGG 0.551029 tig0001514:+12781 Msa1337180:three_prime_UTR
TTTCTCATCAGGAATTTCGA+TGG 0.580152 tig0001514:+12826 Msa1337180:three_prime_UTR
TGATAAAATTAATGCAGCAA+AGG 0.580568 tig0001514:-13058 Msa1337190:intron
TGTACGAAAATAGAAAAGCA+AGG 0.585420 tig0001514:+12543 Msa1337180:three_prime_UTR
GTACGAAAATAGAAAAGCAA+GGG 0.606712 tig0001514:+12544 Msa1337180:three_prime_UTR
TAAGTCATGTGAATTTGAGA+AGG 0.613186 tig0001514:-13206 Msa1337190:CDS
ATCCAAGTGCTAATTCAAAG+TGG 0.625412 tig0001514:+13274 None:intergenic
ACTAGACCGAGTAATCAGAC+TGG 0.680991 tig0001514:-13091 Msa1337190:CDS
CAGGTGTCATGCTTACATTG+GGG 0.762397 tig0001514:+12578 Msa1337180:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTCATTTTTTTTTTTTTTT+TGG - tig0001514:12915-12934 Msa1337190:CDS 10.0%
!!! GTCATTTTTTTTTTTTTTTT+GGG - tig0001514:12916-12935 Msa1337190:CDS 10.0%
!!! TGTCATTTTTTTTTTTTTTT+TGG - tig0001514:12915-12934 Msa1337190:CDS 10.0%
!!! GTCATTTTTTTTTTTTTTTT+GGG - tig0001514:12916-12935 Msa1337190:CDS 10.0%
!!! TTTTTTTTTTTTGGGTATAT+AGG - tig0001514:12924-12943 Msa1337190:intron 15.0%
!!! TTTTTTTTTTTGGGTATATA+GGG - tig0001514:12925-12944 Msa1337190:intron 15.0%
!!! GATTTTGTTATTTTTATTGA+AGG - tig0001514:13346-13365 Msa1337190:five_prime_UTR 15.0%
!! AGTAAAAGTGAAAATAATAT+TGG + tig0001514:13485-13504 None:intergenic 15.0%
!! TGACATAAAAAAAAAAGAAA+AGG + tig0001514:14203-14222 None:intergenic 15.0%
!!! TTTTTTTTTTTTGGGTATAT+AGG - tig0001514:12924-12943 Msa1337190:intron 15.0%
!!! TTTTTTTTTTTGGGTATATA+GGG - tig0001514:12925-12944 Msa1337190:intron 15.0%
!!! GATTTTGTTATTTTTATTGA+AGG - tig0001514:13346-13365 Msa1337190:five_prime_UTR 15.0%
!! AGTAAAAGTGAAAATAATAT+TGG + tig0001514:13485-13504 None:intergenic 15.0%
!! TGACATAAAAAAAAAAGAAA+AGG + tig0001514:14203-14222 None:intergenic 15.0%
!!! TTAATCCAATCAAATTTTGT+CGG - tig0001514:12548-12567 Msa1337190:three_prime_UTR 20.0%
!!! TTTTTTTTTTGGGTATATAG+GGG - tig0001514:12926-12945 Msa1337190:intron 20.0%
!! AATTCAACAATAGAAGTAAA+TGG - tig0001514:12978-12997 Msa1337190:intron 20.0%
!! ATCTGAATTGTATTAAAGAA+AGG + tig0001514:13055-13074 Msa1337180:three_prime_UTR 20.0%
!!! ATTTGTGTTTTCTAGTAATT+GGG + tig0001514:13105-13124 Msa1337180:three_prime_UTR 20.0%
!! AAATAAAAAGTAGAAGTCAT+AGG + tig0001514:13297-13316 None:intergenic 20.0%
!! TGCATGTTTATTTATATGAA+TGG - tig0001514:13316-13335 Msa1337190:five_prime_UTR 20.0%
!!! TATTTTCTTTTGACTATAAC+TGG + tig0001514:13778-13797 None:intergenic 20.0%
!!! ATTGGTATATATTTTTGTGT+AGG - tig0001514:13870-13889 Msa1337190:intron 20.0%
!!! TTAATCCAATCAAATTTTGT+CGG - tig0001514:12548-12567 Msa1337190:three_prime_UTR 20.0%
!!! TTTTTTTTTTGGGTATATAG+GGG - tig0001514:12926-12945 Msa1337190:intron 20.0%
!! AATTCAACAATAGAAGTAAA+TGG - tig0001514:12978-12997 Msa1337190:intron 20.0%
!! ATCTGAATTGTATTAAAGAA+AGG + tig0001514:13055-13074 Msa1337180:three_prime_UTR 20.0%
!!! ATTTGTGTTTTCTAGTAATT+GGG + tig0001514:13105-13124 Msa1337180:three_prime_UTR 20.0%
!! AAATAAAAAGTAGAAGTCAT+AGG + tig0001514:13297-13316 None:intergenic 20.0%
!! TGCATGTTTATTTATATGAA+TGG - tig0001514:13316-13335 Msa1337190:five_prime_UTR 20.0%
!!! TATTTTCTTTTGACTATAAC+TGG + tig0001514:13778-13797 None:intergenic 20.0%
!!! ATTGGTATATATTTTTGTGT+AGG - tig0001514:13870-13889 Msa1337190:intron 20.0%
! TACAAGACATAAAGAAGAAA+AGG + tig0001514:12613-12632 Msa1337180:three_prime_UTR 25.0%
!!! GATTTGTGTTTTCTAGTAAT+TGG + tig0001514:13106-13125 Msa1337180:three_prime_UTR 25.0%
! AGAAAACACAAATCCTTTAT+AGG - tig0001514:13112-13131 Msa1337190:CDS 25.0%
! TCATTAGTGAAAACCTATAA+AGG + tig0001514:13128-13147 Msa1337180:three_prime_UTR 25.0%
! TGATAAAATTAATGCAGCAA+AGG - tig0001514:13748-13767 Msa1337190:intron 25.0%
! GCAAAACAATTGAAAAGTTA+TGG + tig0001514:14080-14099 None:intergenic 25.0%
! AAAAAAAAAGAAAAGGAGAC+AGG + tig0001514:14196-14215 None:intergenic 25.0%
! TACAAGACATAAAGAAGAAA+AGG + tig0001514:12613-12632 Msa1337180:three_prime_UTR 25.0%
!!! GATTTGTGTTTTCTAGTAAT+TGG + tig0001514:13106-13125 Msa1337180:three_prime_UTR 25.0%
! AGAAAACACAAATCCTTTAT+AGG - tig0001514:13112-13131 Msa1337190:CDS 25.0%
! TCATTAGTGAAAACCTATAA+AGG + tig0001514:13128-13147 Msa1337180:three_prime_UTR 25.0%
! TGATAAAATTAATGCAGCAA+AGG - tig0001514:13748-13767 Msa1337190:intron 25.0%
! GCAAAACAATTGAAAAGTTA+TGG + tig0001514:14080-14099 None:intergenic 25.0%
! AAAAAAAAAGAAAAGGAGAC+AGG + tig0001514:14196-14215 None:intergenic 25.0%
ATATGCCGACAAAATTTGAT+TGG + tig0001514:12556-12575 Msa1337180:three_prime_UTR 30.0%
TTATGTCTTGTAAGTACTTC+TGG - tig0001514:12621-12640 Msa1337190:three_prime_UTR 30.0%
! TTTTCACAATACCAATTGTG+TGG - tig0001514:12658-12677 Msa1337190:three_prime_UTR 30.0%
TGATTCCTGATAGTACATAA+AGG - tig0001514:12888-12907 Msa1337190:CDS 30.0%
GATTCCTGATAGTACATAAA+GGG - tig0001514:12889-12908 Msa1337190:CDS 30.0%
GGTATTATACATAACATAGC+AGG - tig0001514:12947-12966 Msa1337190:intron 30.0%
AAGAAAGGAAACTAACTAAG+TGG + tig0001514:13040-13059 Msa1337180:three_prime_UTR 30.0%
! ATCAAGTTTTCAGACATTTC+TGG - tig0001514:13178-13197 Msa1337190:CDS 30.0%
TAAGTCATGTGAATTTGAGA+AGG - tig0001514:13600-13619 Msa1337190:intron 30.0%
CATAATCACATTATCATCCT+TGG + tig0001514:13648-13667 None:intergenic 30.0%
! TGATTATGCATTTGAGATGT+TGG - tig0001514:13660-13679 Msa1337190:intron 30.0%
TTCACGTGTAGATTAAGTAT+TGG - tig0001514:13852-13871 Msa1337190:intron 30.0%
! TTTTCAAAAGGACTTAAACC+TGG - tig0001514:13909-13928 Msa1337190:intron 30.0%
TGAAGCTGACCAAAAAATTT+AGG - tig0001514:14050-14069 Msa1337190:intron 30.0%
!!! TATGGCTTGCCTAAATTTTT+TGG + tig0001514:14062-14081 None:intergenic 30.0%
ACCAACAAAACTTCTCTTTA+TGG + tig0001514:14121-14140 None:intergenic 30.0%
GTACGAAAATAGAAAAGCAA+GGG + tig0001514:14265-14284 None:intergenic 30.0%
TGTACGAAAATAGAAAAGCA+AGG + tig0001514:14266-14285 None:intergenic 30.0%
ATATGCCGACAAAATTTGAT+TGG + tig0001514:12556-12575 Msa1337180:three_prime_UTR 30.0%
TTATGTCTTGTAAGTACTTC+TGG - tig0001514:12621-12640 Msa1337190:three_prime_UTR 30.0%
! TTTTCACAATACCAATTGTG+TGG - tig0001514:12658-12677 Msa1337190:three_prime_UTR 30.0%
TGATTCCTGATAGTACATAA+AGG - tig0001514:12888-12907 Msa1337190:CDS 30.0%
GATTCCTGATAGTACATAAA+GGG - tig0001514:12889-12908 Msa1337190:CDS 30.0%
GGTATTATACATAACATAGC+AGG - tig0001514:12947-12966 Msa1337190:intron 30.0%
AAGAAAGGAAACTAACTAAG+TGG + tig0001514:13040-13059 Msa1337180:three_prime_UTR 30.0%
! ATCAAGTTTTCAGACATTTC+TGG - tig0001514:13178-13197 Msa1337190:CDS 30.0%
TAAGTCATGTGAATTTGAGA+AGG - tig0001514:13600-13619 Msa1337190:intron 30.0%
CATAATCACATTATCATCCT+TGG + tig0001514:13648-13667 None:intergenic 30.0%
! TGATTATGCATTTGAGATGT+TGG - tig0001514:13660-13679 Msa1337190:intron 30.0%
TTCACGTGTAGATTAAGTAT+TGG - tig0001514:13852-13871 Msa1337190:intron 30.0%
! TTTTCAAAAGGACTTAAACC+TGG - tig0001514:13909-13928 Msa1337190:intron 30.0%
TGAAGCTGACCAAAAAATTT+AGG - tig0001514:14050-14069 Msa1337190:intron 30.0%
!!! TATGGCTTGCCTAAATTTTT+TGG + tig0001514:14062-14081 None:intergenic 30.0%
ACCAACAAAACTTCTCTTTA+TGG + tig0001514:14121-14140 None:intergenic 30.0%
GTACGAAAATAGAAAAGCAA+GGG + tig0001514:14265-14284 None:intergenic 30.0%
TGTACGAAAATAGAAAAGCA+AGG + tig0001514:14266-14285 None:intergenic 30.0%
GAAAAACATAAGCACTCACT+GGG + tig0001514:12591-12610 Msa1337180:three_prime_UTR 35.0%
!!! CTTGTAAGTACTTCTGGTTT+TGG - tig0001514:12627-12646 Msa1337190:three_prime_UTR 35.0%
AAGATCCGAAGGCTTATATT+CGG - tig0001514:12760-12779 Msa1337190:CDS 35.0%
AAAGTCCGAATATAAGCCTT+CGG + tig0001514:12768-12787 Msa1337180:three_prime_UTR 35.0%
CTGCAACTGCAATGAATTAT+TGG - tig0001514:12853-12872 Msa1337190:CDS 35.0%
TATCAGGAATCAGATTCCTT+GGG + tig0001514:12880-12899 Msa1337180:three_prime_UTR 35.0%
ACATCCCTTTATGTACTATC+AGG + tig0001514:12896-12915 Msa1337180:three_prime_UTR 35.0%
TTATACATAACATAGCAGGC+AGG - tig0001514:12951-12970 Msa1337190:intron 35.0%
! CTCCTTTTCCTCAATCAAAA+CGG + tig0001514:13455-13474 None:intergenic 35.0%
ATCCAAGTGCTAATTCAAAG+TGG + tig0001514:13535-13554 None:intergenic 35.0%
! GTCAACTGAAAGATGGTTTT+TGG - tig0001514:13622-13641 Msa1337190:intron 35.0%
TTTATCAGTGTTACACAGTC+TGG - tig0001514:13820-13839 Msa1337190:intron 35.0%
TTATCAGTGTTACACAGTCT+GGG - tig0001514:13821-13840 Msa1337190:intron 35.0%
!! TGAAGCAGCTGATTTTCAAA+AGG - tig0001514:13897-13916 Msa1337190:intron 35.0%
TTTCTCATCAGGAATTTCGA+TGG + tig0001514:13983-14002 None:intergenic 35.0%
!!! AATTTTTTGGTCAGCTTCAG+AGG + tig0001514:14049-14068 None:intergenic 35.0%
!! GCCATAAAGAGAAGTTTTGT+TGG - tig0001514:14117-14136 Msa1337190:intron 35.0%
!!! AGCAAGGGAATATTTTGATC+AGG + tig0001514:14250-14269 None:intergenic 35.0%
GAAAAACATAAGCACTCACT+GGG + tig0001514:12591-12610 Msa1337180:three_prime_UTR 35.0%
!!! CTTGTAAGTACTTCTGGTTT+TGG - tig0001514:12627-12646 Msa1337190:three_prime_UTR 35.0%
AAGATCCGAAGGCTTATATT+CGG - tig0001514:12760-12779 Msa1337190:CDS 35.0%
AAAGTCCGAATATAAGCCTT+CGG + tig0001514:12768-12787 Msa1337180:three_prime_UTR 35.0%
CTGCAACTGCAATGAATTAT+TGG - tig0001514:12853-12872 Msa1337190:CDS 35.0%
TATCAGGAATCAGATTCCTT+GGG + tig0001514:12880-12899 Msa1337180:three_prime_UTR 35.0%
ACATCCCTTTATGTACTATC+AGG + tig0001514:12896-12915 Msa1337180:three_prime_UTR 35.0%
TTATACATAACATAGCAGGC+AGG - tig0001514:12951-12970 Msa1337190:intron 35.0%
! CTCCTTTTCCTCAATCAAAA+CGG + tig0001514:13455-13474 None:intergenic 35.0%
ATCCAAGTGCTAATTCAAAG+TGG + tig0001514:13535-13554 None:intergenic 35.0%
! GTCAACTGAAAGATGGTTTT+TGG - tig0001514:13622-13641 Msa1337190:intron 35.0%
TTTATCAGTGTTACACAGTC+TGG - tig0001514:13820-13839 Msa1337190:intron 35.0%
TTATCAGTGTTACACAGTCT+GGG - tig0001514:13821-13840 Msa1337190:intron 35.0%
!! TGAAGCAGCTGATTTTCAAA+AGG - tig0001514:13897-13916 Msa1337190:intron 35.0%
TTTCTCATCAGGAATTTCGA+TGG + tig0001514:13983-14002 None:intergenic 35.0%
!!! AATTTTTTGGTCAGCTTCAG+AGG + tig0001514:14049-14068 None:intergenic 35.0%
!! GCCATAAAGAGAAGTTTTGT+TGG - tig0001514:14117-14136 Msa1337190:intron 35.0%
!!! AGCAAGGGAATATTTTGATC+AGG + tig0001514:14250-14269 None:intergenic 35.0%
GGAAAAACATAAGCACTCAC+TGG + tig0001514:12592-12611 Msa1337180:three_prime_UTR 40.0%
TCACAATACCAATTGTGTGG+TGG - tig0001514:12661-12680 Msa1337190:three_prime_UTR 40.0%
ATCAGGAATCAGATTCCTTG+GGG + tig0001514:12879-12898 Msa1337180:three_prime_UTR 40.0%
CTATCAGGAATCAGATTCCT+TGG + tig0001514:12881-12900 Msa1337180:three_prime_UTR 40.0%
AAAGAATCGTGCTTGTTCGT+TGG + tig0001514:13079-13098 Msa1337180:three_prime_UTR 40.0%
!!! TCTATGCACCGTTTTGATTG+AGG - tig0001514:13444-13463 Msa1337190:intron 40.0%
!!! CACCGTTTTGATTGAGGAAA+AGG - tig0001514:13450-13469 Msa1337190:intron 40.0%
!!! CGTTTTGATTGAGGAAAAGG+AGG - tig0001514:13453-13472 Msa1337190:intron 40.0%
!! TGCCACTTTGAATTAGCACT+TGG - tig0001514:13530-13549 Msa1337190:intron 40.0%
TGAGAAGGTCAACTGAAAGA+TGG - tig0001514:13615-13634 Msa1337190:intron 40.0%
!!! TGAAAGATGGTTTTTGGCCA+AGG - tig0001514:13628-13647 Msa1337190:intron 40.0%
CTGATTACTCGGTCTAGTAT+CGG + tig0001514:13713-13732 None:intergenic 40.0%
TCTTGACCAGTCTGATTACT+CGG + tig0001514:13724-13743 None:intergenic 40.0%
GGATAGGGTTGAGCTTATTA+TGG - tig0001514:13939-13958 Msa1337190:intron 40.0%
AGCTTATCTGCTTTCTCATC+AGG + tig0001514:13994-14013 None:intergenic 40.0%
GGCTATGTACTTTGCAACAT+CGG + tig0001514:14028-14047 None:intergenic 40.0%
!! GTTTTGTTGGTTGAGCTGTT+TGG - tig0001514:14130-14149 Msa1337190:intron 40.0%
! TCAGGTGTCATGCTTACATT+GGG + tig0001514:14232-14251 None:intergenic 40.0%
! ATCAGGTGTCATGCTTACAT+TGG + tig0001514:14233-14252 None:intergenic 40.0%
GGAAAAACATAAGCACTCAC+TGG + tig0001514:12592-12611 Msa1337180:three_prime_UTR 40.0%
TCACAATACCAATTGTGTGG+TGG - tig0001514:12661-12680 Msa1337190:three_prime_UTR 40.0%
ATCAGGAATCAGATTCCTTG+GGG + tig0001514:12879-12898 Msa1337180:three_prime_UTR 40.0%
CTATCAGGAATCAGATTCCT+TGG + tig0001514:12881-12900 Msa1337180:three_prime_UTR 40.0%
AAAGAATCGTGCTTGTTCGT+TGG + tig0001514:13079-13098 Msa1337180:three_prime_UTR 40.0%
!!! TCTATGCACCGTTTTGATTG+AGG - tig0001514:13444-13463 Msa1337190:intron 40.0%
!!! CACCGTTTTGATTGAGGAAA+AGG - tig0001514:13450-13469 Msa1337190:intron 40.0%
!!! CGTTTTGATTGAGGAAAAGG+AGG - tig0001514:13453-13472 Msa1337190:intron 40.0%
!! TGCCACTTTGAATTAGCACT+TGG - tig0001514:13530-13549 Msa1337190:intron 40.0%
TGAGAAGGTCAACTGAAAGA+TGG - tig0001514:13615-13634 Msa1337190:intron 40.0%
!!! TGAAAGATGGTTTTTGGCCA+AGG - tig0001514:13628-13647 Msa1337190:intron 40.0%
CTGATTACTCGGTCTAGTAT+CGG + tig0001514:13713-13732 None:intergenic 40.0%
TCTTGACCAGTCTGATTACT+CGG + tig0001514:13724-13743 None:intergenic 40.0%
GGATAGGGTTGAGCTTATTA+TGG - tig0001514:13939-13958 Msa1337190:intron 40.0%
AGCTTATCTGCTTTCTCATC+AGG + tig0001514:13994-14013 None:intergenic 40.0%
GGCTATGTACTTTGCAACAT+CGG + tig0001514:14028-14047 None:intergenic 40.0%
!! GTTTTGTTGGTTGAGCTGTT+TGG - tig0001514:14130-14149 Msa1337190:intron 40.0%
! TCAGGTGTCATGCTTACATT+GGG + tig0001514:14232-14251 None:intergenic 40.0%
! ATCAGGTGTCATGCTTACAT+TGG + tig0001514:14233-14252 None:intergenic 40.0%
AGCCTTCGGATCTTCAATCA+GGG + tig0001514:12754-12773 Msa1337180:three_prime_UTR 45.0%
AAGCCTTCGGATCTTCAATC+AGG + tig0001514:12755-12774 Msa1337180:three_prime_UTR 45.0%
GCAATGAATTATTGGCCCCA+AGG - tig0001514:12861-12880 Msa1337190:CDS 45.0%
ACTAGACCGAGTAATCAGAC+TGG - tig0001514:13715-13734 Msa1337190:intron 45.0%
TAAACCTGGACAGCTTGGAT+AGG - tig0001514:13923-13942 Msa1337190:intron 45.0%
AAACCTGGACAGCTTGGATA+GGG - tig0001514:13924-13943 Msa1337190:intron 45.0%
TGTCATGCTTACATTGGGGT+GGG + tig0001514:14227-14246 None:intergenic 45.0%
! CAGGTGTCATGCTTACATTG+GGG + tig0001514:14231-14250 None:intergenic 45.0%
AGCCTTCGGATCTTCAATCA+GGG + tig0001514:12754-12773 Msa1337180:three_prime_UTR 45.0%
AAGCCTTCGGATCTTCAATC+AGG + tig0001514:12755-12774 Msa1337180:three_prime_UTR 45.0%
GCAATGAATTATTGGCCCCA+AGG - tig0001514:12861-12880 Msa1337190:CDS 45.0%
ACTAGACCGAGTAATCAGAC+TGG - tig0001514:13715-13734 Msa1337190:intron 45.0%
TAAACCTGGACAGCTTGGAT+AGG - tig0001514:13923-13942 Msa1337190:intron 45.0%
AAACCTGGACAGCTTGGATA+GGG - tig0001514:13924-13943 Msa1337190:intron 45.0%
TGTCATGCTTACATTGGGGT+GGG + tig0001514:14227-14246 None:intergenic 45.0%
! CAGGTGTCATGCTTACATTG+GGG + tig0001514:14231-14250 None:intergenic 45.0%
CACTCACTGGGAGATTCGTT+TGG + tig0001514:12579-12598 Msa1337180:three_prime_UTR 50.0%
TCTGCGTACCACCACACAAT+TGG + tig0001514:12672-12691 Msa1337180:three_prime_UTR 50.0%
TCCCCTGATTGAAGATCCGA+AGG - tig0001514:12749-12768 Msa1337190:exon 50.0%
GCCTTCGGATCTTCAATCAG+GGG + tig0001514:12753-12772 Msa1337180:three_prime_UTR 50.0%
! AGATGTTGGTGCTCTTCAGC+AGG - tig0001514:13674-13693 Msa1337190:intron 50.0%
! GTCTAGTATCGGATCAGAGC+TGG + tig0001514:13702-13721 None:intergenic 50.0%
GGACTTAAACCTGGACAGCT+TGG - tig0001514:13918-13937 Msa1337190:intron 50.0%
GTCATGCTTACATTGGGGTG+GGG + tig0001514:14226-14245 None:intergenic 50.0%
GTGTCATGCTTACATTGGGG+TGG + tig0001514:14228-14247 None:intergenic 50.0%
CACTCACTGGGAGATTCGTT+TGG + tig0001514:12579-12598 Msa1337180:three_prime_UTR 50.0%
TCTGCGTACCACCACACAAT+TGG + tig0001514:12672-12691 Msa1337180:three_prime_UTR 50.0%
TCCCCTGATTGAAGATCCGA+AGG - tig0001514:12749-12768 Msa1337190:exon 50.0%
GCCTTCGGATCTTCAATCAG+GGG + tig0001514:12753-12772 Msa1337180:three_prime_UTR 50.0%
! AGATGTTGGTGCTCTTCAGC+AGG - tig0001514:13674-13693 Msa1337190:intron 50.0%
! GTCTAGTATCGGATCAGAGC+TGG + tig0001514:13702-13721 None:intergenic 50.0%
GGACTTAAACCTGGACAGCT+TGG - tig0001514:13918-13937 Msa1337190:intron 50.0%
GTCATGCTTACATTGGGGTG+GGG + tig0001514:14226-14245 None:intergenic 50.0%
GTGTCATGCTTACATTGGGG+TGG + tig0001514:14228-14247 None:intergenic 50.0%
CAACCCTATCCAAGCTGTCC+AGG + tig0001514:13930-13949 None:intergenic 55.0%
CAACCCTATCCAAGCTGTCC+AGG + tig0001514:13930-13949 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
tig0001514 gene 12521 14307 12521 ID=Msa1337190;Name=Msa1337190
tig0001514 mRNA 12521 14307 12521 ID=Msa1337190-mRNA-1;Parent=Msa1337190;Name=Msa1337190-mRNA-1;_AED=0.26;_eAED=0.26;_QI=204|1|1|1|0.5|0.33|3|236|124
tig0001514 exon 12521 12936 12521 ID=Msa1337190-mRNA-1:exon:1059;Parent=Msa1337190-mRNA-1
tig0001514 exon 13059 13386 13059 ID=Msa1337190-mRNA-1:exon:1058;Parent=Msa1337190-mRNA-1
tig0001514 exon 14237 14307 14237 ID=Msa1337190-mRNA-1:exon:1057;Parent=Msa1337190-mRNA-1
tig0001514 five_prime_UTR 14237 14307 14237 ID=Msa1337190-mRNA-1:five_prime_utr;Parent=Msa1337190-mRNA-1
tig0001514 five_prime_UTR 13254 13386 13254 ID=Msa1337190-mRNA-1:five_prime_utr;Parent=Msa1337190-mRNA-1
tig0001514 CDS 13059 13253 13059 ID=Msa1337190-mRNA-1:cds;Parent=Msa1337190-mRNA-1
tig0001514 CDS 12757 12936 12757 ID=Msa1337190-mRNA-1:cds;Parent=Msa1337190-mRNA-1
tig0001514 three_prime_UTR 12521 12756 12521 ID=Msa1337190-mRNA-1:three_prime_utr;Parent=Msa1337190-mRNA-1
Gene Sequence

>Msa1337190

ATGCAAAGCATAAAGAAATCTATACTAAGTCATGTGAATTTGAGAAGGTCAACTGAAAGATGGTTTTTGGCCAAGGATGATAATGTGATTATGCATTTGAGATGTTGGTGCTCTTCAGCAGGTGCCAGCTCTGATCCGATACTAGACCGAGTAATCAGACTGGTCAAGAAATATGATAAAATTAATGCAGCAAAGGTTACTGAAGCAGCTGATTTTCAAAAGGACTTAAACCTGGACAGCTTGGATAGGGTTGAGCTTATTATGGCTCTTGAAGAAGAATTTTCCATCGAAATTCCTGATGAGAAAGCAGATAAGCTTACTTGCTGTACCGATGTTGCAAAGTACATAGCCTCTGAAGCTGACCAAAAAATTTAG

Protein sequence

>Msa1337190

MQSIKKSILSHVNLRRSTERWFLAKDDNVIMHLRCWCSSAGASSDPILDRVIRLVKKYDKINAAKVTEAADFQKDLNLDSLDRVELIMALEEEFSIEIPDEKADKLTCCTDVAKYIASEADQKI*