AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1376340


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1376340 MtrunA17_Chr1g0212841 93.868 212 13 0 1 212 1 212 1.60e-146 406
Msa1376340 MtrunA17_Chr3g0111011 60.096 208 83 0 3 210 55 262 1.81e-93 274
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1376340 AT1G75270.1 73.709 213 55 1 1 212 1 213 5.83e-115 327
Msa1376340 AT1G19570.1 74.057 212 54 1 1 211 1 212 6.29e-115 327
Msa1376340 AT5G16710.1 60.577 208 82 0 3 210 49 256 3.46e-96 281
Msa1376340 AT1G19550.1 55.172 174 51 3 41 211 3 152 3.48e-60 186

Find 89 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGTCAAGTTTGATGGTAAA+TGG 0.194555 tig0019789:-151728 Msa1376340:CDS
TGAGGAAAGTTTCTTGAAAA+AGG 0.205482 tig0019789:+148592 None:intergenic
TTGGACTATTCCTGAGAATT+TGG 0.207787 tig0019789:-150999 Msa1376340:CDS
AAGAGAACCCTTTGGGAAAA+TGG 0.223837 tig0019789:+151937 None:intergenic
ATTTCAGGGGATCAAATATA+TGG 0.237821 tig0019789:-151320 Msa1376340:intron
CTTATGTTTGGGACAGCAAT+AGG 0.293359 tig0019789:-148839 Msa1376340:three_prime_UTR
CACAGCTGTTGATTTGAGTT+TGG 0.323954 tig0019789:-151068 Msa1376340:CDS
CTACTTCATGCATTGACCTT+TGG 0.348598 tig0019789:+149308 None:intergenic
CCTGATTCTGATGTTATTGT+TGG 0.361346 tig0019789:-151702 Msa1376340:CDS
TGCTTTGGATGAACATCTTA+AGG 0.363226 tig0019789:-151223 Msa1376340:CDS
ACCACTAGATGGTACAGTTT+TGG 0.363899 tig0019789:+151043 None:intergenic
CAAAGTTAAGAGAACCCTTT+GGG 0.367512 tig0019789:+151930 None:intergenic
CATTCACCCAGGTTCGAATC+TGG 0.374806 tig0019789:-148736 Msa1376340:three_prime_UTR
TAACAGGGTCCATTTGTTGC+TGG 0.379644 tig0019789:-151100 Msa1376340:intron
GTTAGCAGAACTCAATGCTT+TGG 0.381868 tig0019789:-151238 Msa1376340:CDS
GTTCCAGTGGTCAAGTTTGA+TGG 0.383379 tig0019789:-151735 Msa1376340:CDS
CCAAAGGGTTCTCTTAACTT+TGG 0.391179 tig0019789:-151929 Msa1376340:CDS
TGGACCTTTGCCAAATTCTC+AGG 0.406140 tig0019789:+150989 None:intergenic
TTTAGACTACTGAGTTGTTT+CGG 0.408993 tig0019789:-148939 Msa1376340:three_prime_UTR
TTGACAATGCTGATGTTGTT+AGG 0.412327 tig0019789:-148765 Msa1376340:three_prime_UTR
AACAGGGTCCATTTGTTGCT+GGG 0.421851 tig0019789:-151099 Msa1376340:intron
GACATACTCCTCTGCAGCCT+TGG 0.421971 tig0019789:+149346 None:intergenic
GCAGAGGAGTATGTCATTGC+TGG 0.422618 tig0019789:-149338 Msa1376340:CDS
GGAGAAACAAGAGATGGTTC+AGG 0.422879 tig0019789:+151660 None:intergenic
CCAAAGTTAAGAGAACCCTT+TGG 0.428562 tig0019789:+151929 None:intergenic
TATTATTAAGAAATAAGAAT+AGG 0.428644 tig0019789:-149237 Msa1376340:three_prime_UTR
TTAATCAAATGGATGTTGTA+TGG 0.432983 tig0019789:+151892 None:intergenic
AGAGTACCATTGGGGTTTGT+CGG 0.436593 tig0019789:+151864 None:intergenic
CTCATTCTCATCATCGCAAA+TGG 0.445448 tig0019789:-152101 Msa1376340:exon
TGTCGGAGATATTAATCAAA+TGG 0.447813 tig0019789:+151881 None:intergenic
GTCAATTGAGCTAAAGCTTA+CGG 0.450367 tig0019789:+148783 None:intergenic
ACCTTCTCCCCAGCAACAAA+TGG 0.454458 tig0019789:+151091 None:intergenic
GTTGGTGCTCCAACTGTTCT+CGG 0.458021 tig0019789:-152052 Msa1376340:CDS
GTCTAAAGTTTGTCGCGATT+AGG 0.459085 tig0019789:+148955 None:intergenic
GGTCAAGTTTGATGGTAAAT+GGG 0.460396 tig0019789:-151727 Msa1376340:CDS
AGCTAAAGCTTACGGACTTA+CGG 0.462612 tig0019789:+148791 None:intergenic
TGAATCCTTGCTCTTCAGAA+AGG 0.466931 tig0019789:+151284 None:intergenic
CCAACAATAACATCAGAATC+AGG 0.477453 tig0019789:+151702 None:intergenic
GGCTCTTGAGGTTGCTGTCA+AGG 0.478726 tig0019789:-152080 Msa1376340:CDS
ACCACTGGAACCTTCCCTCC+AGG 0.482366 tig0019789:+151747 None:intergenic
AAGAGCAAGGATTCAAATGA+TGG 0.484327 tig0019789:-151276 Msa1376340:CDS
TCCATTTGTTGCTGGGGAGA+AGG 0.485126 tig0019789:-151092 Msa1376340:CDS
GACCAAGTGCTACCACTAGA+TGG 0.490749 tig0019789:+151032 None:intergenic
CGTGACCTTTCTGAAGAGCA+AGG 0.493675 tig0019789:-151289 Msa1376340:CDS
TTACCATCAAACTTGACCAC+TGG 0.501479 tig0019789:+151732 None:intergenic
CACGATTCCAGATTCGAACC+TGG 0.503446 tig0019789:+148729 None:intergenic
TCTCCTTTGATGCTATTCAA+TGG 0.506421 tig0019789:-148916 Msa1376340:three_prime_UTR
CAGATTCGAACCTGGGTGAA+TGG 0.506777 tig0019789:+148737 None:intergenic
GTTGCTGTCAAGGCTGCTGT+TGG 0.509413 tig0019789:-152070 Msa1376340:CDS
GAATGAGAAGAGAACAAAGA+AGG 0.509847 tig0019789:+152117 None:intergenic
CTTCTCTATAATAAATAAGT+AGG 0.515000 tig0019789:-149166 Msa1376340:three_prime_UTR
CACTTGGTCACTTCAAGAGT+TGG 0.517047 tig0019789:-151018 Msa1376340:CDS
TTTCAGGGGATCAAATATAT+GGG 0.518607 tig0019789:-151319 Msa1376340:intron
TTATGTTTGGGACAGCAATA+GGG 0.523116 tig0019789:-148838 Msa1376340:three_prime_UTR
AAACACAAGGGTGTCATGGC+AGG 0.528390 tig0019789:-149033 Msa1376340:three_prime_UTR
TGGACATTTCAGCCAGCCAA+TGG 0.544744 tig0019789:+149100 None:intergenic
TACACTGAGGAAAATTGAGC+AGG 0.548119 tig0019789:+151639 None:intergenic
AGGAGTATGTCATTGCTGGA+TGG 0.548576 tig0019789:-149334 Msa1376340:CDS
CATTGCTGGATGGGCACCAA+AGG 0.555766 tig0019789:-149324 Msa1376340:CDS
TGTGGGAACTAGGCAAAGGT+TGG 0.557046 tig0019789:-148639 Msa1376340:three_prime_UTR
ATCATCGCAAATGGCTCTTG+AGG 0.559050 tig0019789:-152092 Msa1376340:exon
GGAAGTGAATCCTGGAGGGA+AGG 0.560932 tig0019789:-151757 Msa1376340:CDS
GGGTTGTAGTTAAATTCATG+TGG 0.566505 tig0019789:-148818 Msa1376340:three_prime_UTR
GAGAAACAAGAGATGGTTCA+GGG 0.568330 tig0019789:+151661 None:intergenic
ATTAAGAAATAAGAATAGGA+TGG 0.569904 tig0019789:-149233 Msa1376340:three_prime_UTR
CCTAAAACACAAGGGTGTCA+TGG 0.572642 tig0019789:-149037 Msa1376340:three_prime_UTR
GGAGTATGTCATTGCTGGAT+GGG 0.575558 tig0019789:-149333 Msa1376340:CDS
CGAGAAAACCAAGGCTGCAG+AGG 0.575652 tig0019789:-149354 Msa1376340:CDS
TGACATGGTTCTAACTTCTG+AGG 0.581715 tig0019789:+148574 None:intergenic
TTACCATTGAATAGCATCAA+AGG 0.591671 tig0019789:+148913 None:intergenic
ACAGGGTCCATTTGTTGCTG+GGG 0.596245 tig0019789:-151098 Msa1376340:intron
GGTTGTAGTTAAATTCATGT+GGG 0.596971 tig0019789:-148817 Msa1376340:three_prime_UTR
TACCATCTAGTGGTAGCACT+TGG 0.606458 tig0019789:-151034 Msa1376340:CDS
TCCTGGAGGGAAGGTTCCAG+TGG 0.613379 tig0019789:-151748 Msa1376340:CDS
ACGATTCCAGATTCGAACCT+GGG 0.620046 tig0019789:+148730 None:intergenic
ATCATGTGGGAACTAGGCAA+AGG 0.620931 tig0019789:-148643 Msa1376340:three_prime_UTR
TATTCCTGAGAATTTGGCAA+AGG 0.623001 tig0019789:-150993 Msa1376340:CDS
GTACAGTCTCCGAGAACAGT+TGG 0.629766 tig0019789:+152043 None:intergenic
TTTGTACCTTGATGTAGTTG+TGG 0.632536 tig0019789:+150969 None:intergenic
AAAGGTCCACAACTACATCA+AGG 0.634770 tig0019789:-150975 Msa1376340:intron
TGAGCAGGAGAAACAAGAGA+TGG 0.641215 tig0019789:+151654 None:intergenic
TTAGGTTGCACCATTCACCC+AGG 0.645366 tig0019789:-148747 Msa1376340:three_prime_UTR
TAAATTCGTCCTAAAACACA+AGG 0.648041 tig0019789:-149046 Msa1376340:three_prime_UTR
TTGAATTTAGAGTACCATTG+GGG 0.655225 tig0019789:+151856 None:intergenic
ACCAAAACTGTACCATCTAG+TGG 0.659489 tig0019789:-151044 Msa1376340:CDS
GCTCGATCACAGTGCATGTG+TGG 0.663154 tig0019789:+149262 None:intergenic
ATATCTCCGACAAACCCCAA+TGG 0.672245 tig0019789:-151870 Msa1376340:intron
TGAATCATTCGAGAAAACCA+AGG 0.685046 tig0019789:-149363 Msa1376340:CDS
AAATTCGTCCTAAAACACAA+GGG 0.747294 tig0019789:-149045 Msa1376340:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTTTTTTAGAGAAAA+GGG + tig0019789:150561-150580 None:intergenic 10.0%
!!! AATCAAATTTTGAAATTTAA+AGG + tig0019789:150976-150995 None:intergenic 10.0%
!! TTGATAAATAATATATTACA+CGG + tig0019789:151109-151128 None:intergenic 10.0%
!! TATTATTAAGAAATAAGAAT+AGG - tig0019789:151485-151504 Msa1376340:intron 10.0%
!!! TATTTTTTTTTATAAACAAG+TGG + tig0019789:152056-152075 None:intergenic 10.0%
!! AAAAAAAAATAAAAATCATG+TGG - tig0019789:152065-152084 Msa1376340:CDS 10.0%
!! AAAAAAAATAAAAATCATGT+GGG - tig0019789:152066-152085 Msa1376340:CDS 10.0%
!!! TTTTATTTCTTTGAATTTTG+TGG - tig0019789:148917-148936 Msa1376340:three_prime_UTR 15.0%
!!! TTTATTTATTTGTAGGTTTT+TGG - tig0019789:148944-148963 Msa1376340:three_prime_UTR 15.0%
!!! TTTGAAAGTATAAAAATAGA+GGG + tig0019789:149127-149146 None:intergenic 15.0%
!! ATAAATTCACATATATACAT+TGG + tig0019789:149525-149544 None:intergenic 15.0%
!!! TTTTTTTTTTTAGAGAAAAG+GGG + tig0019789:150560-150579 None:intergenic 15.0%
!!! GATTTTTTTTTTTAGAGAAA+AGG + tig0019789:150562-150581 None:intergenic 15.0%
!!! AAATTTTGAAATTTAAAGGA+GGG + tig0019789:150972-150991 None:intergenic 15.0%
!!! TTAATAGGTTATATAACTTT+TGG - tig0019789:151048-151067 Msa1376340:CDS 15.0%
!!! TTTCATTTGTTTTCATTTTC+AGG - tig0019789:148761-148780 Msa1376340:three_prime_UTR 20.0%
!! TGGCTTATTTATTTATTTGT+AGG - tig0019789:148937-148956 Msa1376340:three_prime_UTR 20.0%
!!! GTTTGAAAGTATAAAAATAG+AGG + tig0019789:149128-149147 None:intergenic 20.0%
!!! ATTTTGTGTTTTTTCTTTTG+TGG - tig0019789:149207-149226 Msa1376340:three_prime_UTR 20.0%
!!! TTTTGTGTTTTTTCTTTTGT+GGG - tig0019789:149208-149227 Msa1376340:three_prime_UTR 20.0%
!! ACATTTCCAATATCAAATTA+TGG - tig0019789:150162-150181 Msa1376340:intron 20.0%
!! CATTTCCAATATCAAATTAT+GGG - tig0019789:150163-150182 Msa1376340:intron 20.0%
!! TATGCTAAAAAAATGTTACA+TGG + tig0019789:150456-150475 None:intergenic 20.0%
!!! TTTCATTTTTTTGGATAAAG+TGG + tig0019789:150584-150603 None:intergenic 20.0%
!!! AATTTTGAAATTTAAAGGAG+GGG + tig0019789:150971-150990 None:intergenic 20.0%
!!! CAAATTTTGAAATTTAAAGG+AGG + tig0019789:150973-150992 None:intergenic 20.0%
!! TCATCACATTATTAGTTAAT+AGG - tig0019789:151033-151052 Msa1376340:CDS 20.0%
!! TATATGAATTGATTGATTGA+TGG - tig0019789:151302-151321 Msa1376340:CDS 20.0%
!! ATTAAGAAATAAGAATAGGA+TGG - tig0019789:151489-151508 Msa1376340:intron 20.0%
!! CTTCTCTATAATAAATAAGT+AGG - tig0019789:151556-151575 Msa1376340:intron 20.0%
!!! TTCACATTTTAAAGCTTATA+TGG + tig0019789:151645-151664 None:intergenic 20.0%
!!! AGATTTTAAGTTCTTATGTT+TGG - tig0019789:151871-151890 Msa1376340:CDS 20.0%
!!! GATTTTAAGTTCTTATGTTT+GGG - tig0019789:151872-151891 Msa1376340:CDS 20.0%
! TTAATCAAATGGATGTTGTA+TGG + tig0019789:148833-148852 None:intergenic 25.0%
! GTTAATTAGCTATCAATTAC+AGG + tig0019789:149580-149599 None:intergenic 25.0%
!!! TACAAAGTTGTTTTCTGTAA+TGG - tig0019789:149770-149789 Msa1376340:intron 25.0%
! ATGGATGTAATCTTATCTTA+TGG - tig0019789:149789-149808 Msa1376340:intron 25.0%
! AAGTACAACAAAAAAACAGT+TGG + tig0019789:149929-149948 None:intergenic 25.0%
! TTATGAAGAAAATTCAAGTG+TGG + tig0019789:149958-149977 None:intergenic 25.0%
!!! GGGTTTTAAATCTTACATAT+TGG - tig0019789:150339-150358 Msa1376340:intron 25.0%
!! ATTGGATAGAGATTTCTTTT+AGG - tig0019789:150357-150376 Msa1376340:intron 25.0%
! CAAGTGATTAAATTTATCTC+TGG - tig0019789:150478-150497 Msa1376340:intron 25.0%
!!! AAGCATGCTTTTCATTTTTT+TGG + tig0019789:150593-150612 None:intergenic 25.0%
! ATTGTAGAAGTTGACAATTA+GGG - tig0019789:150742-150761 Msa1376340:intron 25.0%
! TCATAAATCAAAGAAACAAC+AGG + tig0019789:150836-150855 None:intergenic 25.0%
! AAATACATCAATACTCCTAA+AGG + tig0019789:151162-151181 None:intergenic 25.0%
!! GTTGTAGGTATTGTAAATTA+AGG + tig0019789:151221-151240 None:intergenic 25.0%
!!! TTTTTTTCAGCAAATGCAAA+AGG + tig0019789:151249-151268 None:intergenic 25.0%
!!! ACTGTGTTTTATTAATCCAT+TGG - tig0019789:151606-151625 Msa1376340:intron 25.0%
!! CTGAGATTTATTTCTGTTAC+CGG - tig0019789:148720-148739 Msa1376340:three_prime_UTR 30.0%
AATCGTGAAAAATGTAGAAC+CGG + tig0019789:148742-148761 None:intergenic 30.0%
TGTCGGAGATATTAATCAAA+TGG + tig0019789:148844-148863 None:intergenic 30.0%
! TTGAATTTAGAGTACCATTG+GGG + tig0019789:148869-148888 None:intergenic 30.0%
! GTTGAATTTAGAGTACCATT+GGG + tig0019789:148870-148889 None:intergenic 30.0%
! AGTTGAATTTAGAGTACCAT+TGG + tig0019789:148871-148890 None:intergenic 30.0%
TTGAATACCATCTTGCAAAT+GGG + tig0019789:149163-149182 None:intergenic 30.0%
!!! GTATACATGCTTGTTTTGAT+TGG - tig0019789:149276-149295 Msa1376340:three_prime_UTR 30.0%
ATTTCAGGGGATCAAATATA+TGG - tig0019789:149402-149421 Msa1376340:intron 30.0%
TTTCAGGGGATCAAATATAT+GGG - tig0019789:149403-149422 Msa1376340:intron 30.0%
!!! TCTTTGTTTTAAAGCAAAGC+TGG - tig0019789:150090-150109 Msa1376340:intron 30.0%
GCAAACCCATAATTTGATAT+TGG + tig0019789:150171-150190 None:intergenic 30.0%
GATATGGATGAAAGATGTAT+GGG + tig0019789:150243-150262 None:intergenic 30.0%
TGATATGGATGAAAGATGTA+TGG + tig0019789:150244-150263 None:intergenic 30.0%
!! GTACTTCAATCGTTTTGATA+TGG + tig0019789:150259-150278 None:intergenic 30.0%
TTAAAGTCTGAACTTAAAGC+TGG - tig0019789:150318-150337 Msa1376340:intron 30.0%
TAAAGTCTGAACTTAAAGCT+GGG - tig0019789:150319-150338 Msa1376340:intron 30.0%
!! AATTATGCGTGGCTATTTTA+GGG - tig0019789:150384-150403 Msa1376340:intron 30.0%
!!! TTTTTTTTAGAGAAAAGGGG+AGG + tig0019789:150557-150576 None:intergenic 30.0%
AATTGTCAACTTCTACAATC+TGG + tig0019789:150741-150760 None:intergenic 30.0%
GATTGTAGAAGTTGACAATT+AGG - tig0019789:150741-150760 Msa1376340:intron 30.0%
TAGTTCACATTAACTAGTCA+TGG - tig0019789:150788-150807 Msa1376340:intron 30.0%
ATCTTCAGACTTAAAGTTGA+TGG + tig0019789:150915-150934 None:intergenic 30.0%
TATATTACACGGATTCAATG+TGG + tig0019789:151098-151117 None:intergenic 30.0%
ATATATCGAGTTAGACCTTT+AGG - tig0019789:151144-151163 Msa1376340:intron 30.0%
TACCTAAGAGATTCATTGTA+TGG + tig0019789:151190-151209 None:intergenic 30.0%
! GGTGTAACTTATCATTTTGA+AGG - tig0019789:151510-151529 Msa1376340:intron 30.0%
!! TTCATGTGTGTTTTGTTGAT+GGG - tig0019789:151582-151601 Msa1376340:intron 30.0%
!! TGTTTTATTAATCCATTGGC+TGG - tig0019789:151610-151629 Msa1376340:intron 30.0%
TAAATTCGTCCTAAAACACA+AGG - tig0019789:151676-151695 Msa1376340:CDS 30.0%
AAATTCGTCCTAAAACACAA+GGG - tig0019789:151677-151696 Msa1376340:CDS 30.0%
TTTAGACTACTGAGTTGTTT+CGG - tig0019789:151783-151802 Msa1376340:intron 30.0%
TTACCATTGAATAGCATCAA+AGG + tig0019789:151812-151831 None:intergenic 30.0%
GGTTGTAGTTAAATTCATGT+GGG - tig0019789:151905-151924 Msa1376340:CDS 30.0%
ATAAAAATCATGTGGGAACT+AGG - tig0019789:152073-152092 Msa1376340:CDS 30.0%
GAAAGTTTCTTGAAAAAGGA+GGG + tig0019789:152129-152148 None:intergenic 30.0%
TGAGGAAAGTTTCTTGAAAA+AGG + tig0019789:152133-152152 None:intergenic 30.0%
GAATGAGAAGAGAACAAAGA+AGG + tig0019789:148608-148627 None:intergenic 35.0%
CAAAGTTAAGAGAACCCTTT+GGG + tig0019789:148795-148814 None:intergenic 35.0%
! TGGTCAAGTTTGATGGTAAA+TGG - tig0019789:148994-149013 Msa1376340:three_prime_UTR 35.0%
! GGTCAAGTTTGATGGTAAAT+GGG - tig0019789:148995-149014 Msa1376340:three_prime_UTR 35.0%
CCAACAATAACATCAGAATC+AGG + tig0019789:149023-149042 None:intergenic 35.0%
CCTGATTCTGATGTTATTGT+TGG - tig0019789:149020-149039 Msa1376340:three_prime_UTR 35.0%
TGAATACCATCTTGCAAATG+GGG + tig0019789:149162-149181 None:intergenic 35.0%
CTTGAATACCATCTTGCAAA+TGG + tig0019789:149164-149183 None:intergenic 35.0%
!!! GTTTTTTCTTTTGTGGGATG+AGG - tig0019789:149214-149233 Msa1376340:three_prime_UTR 35.0%
TTCACGATGTTCACAATTTC+AGG - tig0019789:149387-149406 Msa1376340:intron 35.0%
TCACGATGTTCACAATTTCA+GGG - tig0019789:149388-149407 Msa1376340:intron 35.0%
AAGAGCAAGGATTCAAATGA+TGG - tig0019789:149446-149465 Msa1376340:intron 35.0%
! TGCTTTGGATGAACATCTTA+AGG - tig0019789:149499-149518 Msa1376340:intron 35.0%
AATTAACCACACTAACATGC+TGG - tig0019789:149593-149612 Msa1376340:intron 35.0%
TTGGACTATTCCTGAGAATT+TGG - tig0019789:149723-149742 Msa1376340:intron 35.0%
TATTCCTGAGAATTTGGCAA+AGG - tig0019789:149729-149748 Msa1376340:intron 35.0%
TTTGTACCTTGATGTAGTTG+TGG + tig0019789:149756-149775 None:intergenic 35.0%
CGCAAAAGACATGACTAAAA+GGG + tig0019789:149817-149836 None:intergenic 35.0%
ACGCAAAAGACATGACTAAA+AGG + tig0019789:149818-149837 None:intergenic 35.0%
TTCACAGCTGTTCAATTCAA+TGG + tig0019789:149843-149862 None:intergenic 35.0%
TGTAGTCAACATAAAGTGTG+TGG - tig0019789:150019-150038 Msa1376340:intron 35.0%
! CAATTTGCTTCTGGAAAGAT+TGG + tig0019789:150130-150149 None:intergenic 35.0%
! TGTGAACATCAATTTGCTTC+TGG + tig0019789:150139-150158 None:intergenic 35.0%
!! TGCTGGTGTCATGAAAAAAT+TGG - tig0019789:150197-150216 Msa1376340:intron 35.0%
!! TGGTGTCATGAAAAAATTGG+TGG - tig0019789:150200-150219 Msa1376340:intron 35.0%
!! TTTTAGGTCTCAATTATGCG+TGG - tig0019789:150373-150392 Msa1376340:intron 35.0%
!! CAATTATGCGTGGCTATTTT+AGG - tig0019789:150383-150402 Msa1376340:intron 35.0%
GGTGAGTTAAGAAATAGAGA+AGG + tig0019789:150536-150555 None:intergenic 35.0%
!! CATGCTTTTCTTATTTGCCA+GGG - tig0019789:150606-150625 Msa1376340:intron 35.0%
! GTTCAATGAAGCATCAGTAA+GGG + tig0019789:150684-150703 None:intergenic 35.0%
! AGTTCAATGAAGCATCAGTA+AGG + tig0019789:150685-150704 None:intergenic 35.0%
GTCCATACAATGAATCTCTT+AGG - tig0019789:151185-151204 Msa1376340:intron 35.0%
! ATGCAAAAGGCTTTAGTTGT+AGG + tig0019789:151236-151255 None:intergenic 35.0%
TGAATCATTCGAGAAAACCA+AGG - tig0019789:151359-151378 Msa1376340:intron 35.0%
!! GTTCATGTGTGTTTTGTTGA+TGG - tig0019789:151581-151600 Msa1376340:intron 35.0%
TCTCCTTTGATGCTATTCAA+TGG - tig0019789:151806-151825 Msa1376340:intron 35.0%
! TTATGTTTGGGACAGCAATA+GGG - tig0019789:151884-151903 Msa1376340:CDS 35.0%
GGGTTGTAGTTAAATTCATG+TGG - tig0019789:151904-151923 Msa1376340:CDS 35.0%
GTCAATTGAGCTAAAGCTTA+CGG + tig0019789:151942-151961 None:intergenic 35.0%
TTGACAATGCTGATGTTGTT+AGG - tig0019789:151957-151976 Msa1376340:intron 35.0%
GGAAAGTTTCTTGAAAAAGG+AGG + tig0019789:152130-152149 None:intergenic 35.0%
CTCATTCTCATCATCGCAAA+TGG - tig0019789:148621-148640 Msa1376340:three_prime_UTR 40.0%
!! TTTCAGGTCCATTTTCCCAA+AGG - tig0019789:148777-148796 Msa1376340:three_prime_UTR 40.0%
! TTCAGGTCCATTTTCCCAAA+GGG - tig0019789:148778-148797 Msa1376340:three_prime_UTR 40.0%
! AAGAGAACCCTTTGGGAAAA+TGG + tig0019789:148788-148807 None:intergenic 40.0%
CCAAAGTTAAGAGAACCCTT+TGG + tig0019789:148796-148815 None:intergenic 40.0%
CCAAAGGGTTCTCTTAACTT+TGG - tig0019789:148793-148812 Msa1376340:three_prime_UTR 40.0%
!! AGGTTTTTGGAAGTGAATCC+TGG - tig0019789:148957-148976 Msa1376340:three_prime_UTR 40.0%
!! TTTTTGGAAGTGAATCCTGG+AGG - tig0019789:148960-148979 Msa1376340:three_prime_UTR 40.0%
!! TTTTGGAAGTGAATCCTGGA+GGG - tig0019789:148961-148980 Msa1376340:three_prime_UTR 40.0%
TTACCATCAAACTTGACCAC+TGG + tig0019789:148993-149012 None:intergenic 40.0%
GAGAAACAAGAGATGGTTCA+GGG + tig0019789:149064-149083 None:intergenic 40.0%
TACACTGAGGAAAATTGAGC+AGG + tig0019789:149086-149105 None:intergenic 40.0%
TGATGTGATGTCATACACTG+AGG + tig0019789:149099-149118 None:intergenic 40.0%
ACTATTCCCCATTTGCAAGA+TGG - tig0019789:149153-149172 Msa1376340:three_prime_UTR 40.0%
CACGATGTTCACAATTTCAG+GGG - tig0019789:149389-149408 Msa1376340:intron 40.0%
TGAATCCTTGCTCTTCAGAA+AGG + tig0019789:149441-149460 None:intergenic 40.0%
GTTAGCAGAACTCAATGCTT+TGG - tig0019789:149484-149503 Msa1376340:intron 40.0%
!! AACATGCTGGAGGTATTAAC+AGG - tig0019789:149606-149625 Msa1376340:intron 40.0%
!! ACATGCTGGAGGTATTAACA+GGG - tig0019789:149607-149626 Msa1376340:intron 40.0%
!! CACAGCTGTTGATTTGAGTT+TGG - tig0019789:149654-149673 Msa1376340:intron 40.0%
ACCAAAACTGTACCATCTAG+TGG - tig0019789:149678-149697 Msa1376340:intron 40.0%
! ACCACTAGATGGTACAGTTT+TGG + tig0019789:149682-149701 None:intergenic 40.0%
AAAGGTCCACAACTACATCA+AGG - tig0019789:149747-149766 Msa1376340:intron 40.0%
!! AACTGCATGATGGCATTGAT+TGG - tig0019789:149863-149882 Msa1376340:intron 40.0%
! TGCTTGGCAATGAGAACTTT+TGG - tig0019789:149886-149905 Msa1376340:intron 40.0%
GTCAACATAAAGTGTGTGGA+AGG - tig0019789:150023-150042 Msa1376340:intron 40.0%
TGGATGAAAGATGTATGGGA+AGG + tig0019789:150239-150258 None:intergenic 40.0%
!! GCATGCTTTTCTTATTTGCC+AGG - tig0019789:150605-150624 Msa1376340:intron 40.0%
GGATAATTAAGAGTGAACCC+TGG + tig0019789:150626-150645 None:intergenic 40.0%
TATCCTGCTTGACATGTACA+TGG - tig0019789:150641-150660 Msa1376340:intron 40.0%
! CTACTTCATGCATTGACCTT+TGG + tig0019789:151417-151436 None:intergenic 40.0%
! GTCTAAAGTTTGTCGCGATT+AGG + tig0019789:151770-151789 None:intergenic 40.0%
! CTTATGTTTGGGACAGCAAT+AGG - tig0019789:151883-151902 Msa1376340:CDS 40.0%
AGCTAAAGCTTACGGACTTA+CGG + tig0019789:151934-151953 None:intergenic 40.0%
ATCATCGCAAATGGCTCTTG+AGG - tig0019789:148630-148649 Msa1376340:three_prime_UTR 45.0%
ATATCTCCGACAAACCCCAA+TGG - tig0019789:148852-148871 Msa1376340:three_prime_UTR 45.0%
! AGAGTACCATTGGGGTTTGT+CGG + tig0019789:148861-148880 None:intergenic 45.0%
GTTCCAGTGGTCAAGTTTGA+TGG - tig0019789:148987-149006 Msa1376340:three_prime_UTR 45.0%
GGAGAAACAAGAGATGGTTC+AGG + tig0019789:149065-149084 None:intergenic 45.0%
TGAGCAGGAGAAACAAGAGA+TGG + tig0019789:149071-149090 None:intergenic 45.0%
TTTGTGGGATGAGGAATCTG+AGG - tig0019789:149223-149242 Msa1376340:three_prime_UTR 45.0%
TTGTGGGATGAGGAATCTGA+GGG - tig0019789:149224-149243 Msa1376340:three_prime_UTR 45.0%
TAACCACACTAACATGCTGG+AGG - tig0019789:149596-149615 Msa1376340:intron 45.0%
ATACCTCCAGCATGTTAGTG+TGG + tig0019789:149602-149621 None:intergenic 45.0%
! TAACAGGGTCCATTTGTTGC+TGG - tig0019789:149622-149641 Msa1376340:intron 45.0%
! AACAGGGTCCATTTGTTGCT+GGG - tig0019789:149623-149642 Msa1376340:intron 45.0%
TACCATCTAGTGGTAGCACT+TGG - tig0019789:149688-149707 Msa1376340:intron 45.0%
CACTTGGTCACTTCAAGAGT+TGG - tig0019789:149704-149723 Msa1376340:intron 45.0%
TGGACCTTTGCCAAATTCTC+AGG + tig0019789:149736-149755 None:intergenic 45.0%
CAGCTGTGAAAACTGCATGA+TGG - tig0019789:149853-149872 Msa1376340:intron 45.0%
!! TGATGGCATTGATTGGTGCT+TGG - tig0019789:149870-149889 Msa1376340:intron 45.0%
!! TATGGGTTTGCTATGCTTGC+TGG - tig0019789:150180-150199 Msa1376340:intron 45.0%
CTTCCATGTACATGTCAAGC+AGG + tig0019789:150647-150666 None:intergenic 45.0%
! AGGAGTATGTCATTGCTGGA+TGG - tig0019789:151388-151407 Msa1376340:intron 45.0%
GGAGTATGTCATTGCTGGAT+GGG - tig0019789:151389-151408 Msa1376340:intron 45.0%
! CCATGACACCCTTGTGTTTT+AGG + tig0019789:151688-151707 None:intergenic 45.0%
!! CCTAAAACACAAGGGTGTCA+TGG - tig0019789:151685-151704 Msa1376340:CDS 45.0%
ACGATTCCAGATTCGAACCT+GGG + tig0019789:151995-152014 None:intergenic 45.0%
ATCATGTGGGAACTAGGCAA+AGG - tig0019789:152079-152098 Msa1376340:CDS 45.0%
!! TTAAAAATTTAACAAAAATA+AGG + tig0019789:149557-149576 None:intergenic 5.0%
! GTTGGTGCTCCAACTGTTCT+CGG - tig0019789:148670-148689 Msa1376340:three_prime_UTR 50.0%
GTACAGTCTCCGAGAACAGT+TGG + tig0019789:148682-148701 None:intergenic 50.0%
TCTCAGAGAGAGAGAGACAG+AGG + tig0019789:148706-148725 None:intergenic 50.0%
! CGTGACCTTTCTGAAGAGCA+AGG - tig0019789:149433-149452 Msa1376340:intron 50.0%
! ACAGGGTCCATTTGTTGCTG+GGG - tig0019789:149624-149643 Msa1376340:intron 50.0%
! TCCATTTGTTGCTGGGGAGA+AGG - tig0019789:149630-149649 Msa1376340:intron 50.0%
ACCTTCTCCCCAGCAACAAA+TGG + tig0019789:149634-149653 None:intergenic 50.0%
GACCAAGTGCTACCACTAGA+TGG + tig0019789:149693-149712 None:intergenic 50.0%
! GCAGAGGAGTATGTCATTGC+TGG - tig0019789:151384-151403 Msa1376340:intron 50.0%
TGGACATTTCAGCCAGCCAA+TGG + tig0019789:151625-151644 None:intergenic 50.0%
!! AAACACAAGGGTGTCATGGC+AGG - tig0019789:151689-151708 Msa1376340:CDS 50.0%
! TTAGGTTGCACCATTCACCC+AGG - tig0019789:151975-151994 Msa1376340:intron 50.0%
CAGATTCGAACCTGGGTGAA+TGG + tig0019789:151988-152007 None:intergenic 50.0%
CATTCACCCAGGTTCGAATC+TGG - tig0019789:151986-152005 Msa1376340:intron 50.0%
CACGATTCCAGATTCGAACC+TGG + tig0019789:151996-152015 None:intergenic 50.0%
TGTGGGAACTAGGCAAAGGT+TGG - tig0019789:152083-152102 Msa1376340:CDS 50.0%
GGCTCTTGAGGTTGCTGTCA+AGG - tig0019789:148642-148661 Msa1376340:three_prime_UTR 55.0%
GTTGCTGTCAAGGCTGCTGT+TGG - tig0019789:148652-148671 Msa1376340:three_prime_UTR 55.0%
GGAAGTGAATCCTGGAGGGA+AGG - tig0019789:148965-148984 Msa1376340:three_prime_UTR 55.0%
GAGGAATCTGAGGGAGACTG+TGG - tig0019789:149233-149252 Msa1376340:three_prime_UTR 55.0%
TGTGTACACCTGCACGCACA+AGG - tig0019789:150889-150908 Msa1376340:intron 55.0%
AGGGGAAGAAGACACTGCAG+TGG + tig0019789:150953-150972 None:intergenic 55.0%
CGAGAAAACCAAGGCTGCAG+AGG - tig0019789:151368-151387 Msa1376340:intron 55.0%
GACATACTCCTCTGCAGCCT+TGG + tig0019789:151379-151398 None:intergenic 55.0%
CATTGCTGGATGGGCACCAA+AGG - tig0019789:151398-151417 Msa1376340:intron 55.0%
GCTCGATCACAGTGCATGTG+TGG + tig0019789:151463-151482 None:intergenic 55.0%
TCCTGGAGGGAAGGTTCCAG+TGG - tig0019789:148974-148993 Msa1376340:three_prime_UTR 60.0%
ACCACTGGAACCTTCCCTCC+AGG + tig0019789:148978-148997 None:intergenic 60.0%
!! GTTGATGGCCTTGTGCGTGC+AGG + tig0019789:150900-150919 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0019789 gene 148584 152160 148584 ID=Msa1376340;Name=Msa1376340
tig0019789 mRNA 148584 152160 148584 ID=Msa1376340-mRNA-1;Parent=Msa1376340;Name=Msa1376340-mRNA-1;_AED=0.07;_eAED=0.07;_QI=56|1|1|1|1|1|6|729|212
tig0019789 exon 148584 149399 148584 ID=Msa1376340-mRNA-1:exon:5010;Parent=Msa1376340-mRNA-1
tig0019789 exon 150976 151116 150976 ID=Msa1376340-mRNA-1:exon:5009;Parent=Msa1376340-mRNA-1
tig0019789 exon 151218 151335 151218 ID=Msa1376340-mRNA-1:exon:5008;Parent=Msa1376340-mRNA-1
tig0019789 exon 151642 151785 151642 ID=Msa1376340-mRNA-1:exon:5007;Parent=Msa1376340-mRNA-1
tig0019789 exon 151871 151961 151871 ID=Msa1376340-mRNA-1:exon:5006;Parent=Msa1376340-mRNA-1
tig0019789 exon 152047 152160 152047 ID=Msa1376340-mRNA-1:exon:5005;Parent=Msa1376340-mRNA-1
tig0019789 five_prime_UTR 152105 152160 152105 ID=Msa1376340-mRNA-1:five_prime_utr;Parent=Msa1376340-mRNA-1
tig0019789 CDS 152047 152104 152047 ID=Msa1376340-mRNA-1:cds;Parent=Msa1376340-mRNA-1
tig0019789 CDS 151871 151961 151871 ID=Msa1376340-mRNA-1:cds;Parent=Msa1376340-mRNA-1
tig0019789 CDS 151642 151785 151642 ID=Msa1376340-mRNA-1:cds;Parent=Msa1376340-mRNA-1
tig0019789 CDS 151218 151335 151218 ID=Msa1376340-mRNA-1:cds;Parent=Msa1376340-mRNA-1
tig0019789 CDS 150976 151116 150976 ID=Msa1376340-mRNA-1:cds;Parent=Msa1376340-mRNA-1
tig0019789 CDS 149313 149399 149313 ID=Msa1376340-mRNA-1:cds;Parent=Msa1376340-mRNA-1
tig0019789 three_prime_UTR 148584 149312 148584 ID=Msa1376340-mRNA-1:three_prime_utr;Parent=Msa1376340-mRNA-1
Gene Sequence

>Msa1376340

ATGGCTCTTGAGGTTGCTGTCAAGGCTGCTGTTGGTGCTCCAACTGTTCTCGGAGACTGTCCATTTTCCCAAAGGGTTCTCTTAACTTTGGAAGAGAAGAAGATTCCATACAACATCCATTTGATTAATATCTCCGACAAACCCCAATGGTTTTTGGAAGTGAATCCTGGAGGGAAGGTTCCAGTGGTCAAGTTTGATGGTAAATGGGTTCCTGATTCTGATGTTATTGTTGGAATTCTTGAAGACAAATACCCTGAACCATCTCTTGTTTCTCCTGCTCAATTTTCCTCAGTGGGATCAAATATATGGGATACTTTCGTGACCTTTCTGAAGAGCAAGGATTCAAATGATGGAACAGAACAAGCTTTGTTAGCAGAACTCAATGCTTTGGATGAACATCTTAAGGCCAATGGTCCATTTGTTGCTGGGGAGAAGGTCACAGCTGTTGATTTGAGTTTGGCACCAAAACTGTACCATCTAGTGGTAGCACTTGGTCACTTCAAGAGTTGGACTATTCCTGAGAATTTGGCAAAGGTCCACAACTACATCAAGTTGCTCTTCTCTCGTGAATCATTCGAGAAAACCAAGGCTGCAGAGGAGTATGTCATTGCTGGATGGGCACCAAAGGTCAATGCATGA

Protein sequence

>Msa1376340

MALEVAVKAAVGAPTVLGDCPFSQRVLLTLEEKKIPYNIHLINISDKPQWFLEVNPGGKVPVVKFDGKWVPDSDVIVGILEDKYPEPSLVSPAQFSSVGSNIWDTFVTFLKSKDSNDGTEQALLAELNALDEHLKANGPFVAGEKVTAVDLSLAPKLYHLVVALGHFKSWTIPENLAKVHNYIKLLFSRESFEKTKAAEEYVIAGWAPKVNA*