Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1460380 | XP_013470277.1 | 88.850 | 287 | 17 | 1 | 1 | 272 | 10 | 296 | 0.0 | 523 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1460380 | A0A072W228 | 88.850 | 287 | 17 | 1 | 1 | 272 | 10 | 296 | 0.0 | 523 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0022640 | Msa1460380 | 0.801853 | 7.400960e-49 | -8.615850e-47 |
| Msa0036960 | Msa1460380 | 0.821595 | 3.713638e-53 | -8.615850e-47 |
| Msa0038350 | Msa1460380 | -0.810982 | 8.790682e-51 | -8.615850e-47 |
| Msa0044100 | Msa1460380 | 0.941034 | 8.381436e-101 | -8.615850e-47 |
| Msa0045650 | Msa1460380 | 0.807821 | 4.190526e-50 | -8.615850e-47 |
| Msa0078430 | Msa1460380 | 0.807418 | 5.104451e-50 | -8.615850e-47 |
| Msa0095540 | Msa1460380 | 0.821846 | 3.249365e-53 | -8.615850e-47 |
| Msa1369700 | Msa1460380 | 0.982337 | 7.840418e-155 | -8.615850e-47 |
| Msa1371830 | Msa1460380 | 0.802263 | 6.095692e-49 | -8.615850e-47 |
| Msa1376340 | Msa1460380 | 0.806572 | 7.709295e-50 | -8.615850e-47 |
| Msa1381140 | Msa1460380 | 0.806081 | 9.781696e-50 | -8.615850e-47 |
| Msa1395870 | Msa1460380 | 0.830860 | 2.315336e-55 | -8.615850e-47 |
| Msa1397250 | Msa1460380 | 0.823208 | 1.567542e-53 | -8.615850e-47 |
| Msa1399560 | Msa1460380 | 0.871100 | 8.836283e-67 | -8.615850e-47 |
| Msa1401150 | Msa1460380 | 0.814136 | 1.796289e-51 | -8.615850e-47 |
| Msa1405180 | Msa1460380 | 0.803818 | 2.906967e-49 | -8.615850e-47 |
| Msa1423450 | Msa1460380 | 0.821935 | 3.098984e-53 | -8.615850e-47 |
| Msa1431000 | Msa1460380 | 0.807033 | 6.157401e-50 | -8.615850e-47 |
| Msa1437190 | Msa1460380 | 0.962646 | 3.986315e-121 | -8.615850e-47 |
| Msa1443840 | Msa1460380 | 0.862388 | 5.250665e-64 | -8.615850e-47 |
| Msa1452060 | Msa1460380 | 0.866147 | 3.527173e-65 | -8.615850e-47 |
| Msa1460380 | Msa1460890 | 0.828697 | 7.784821e-55 | -8.615850e-47 |
| Msa0611380 | Msa1460380 | 0.879983 | 7.981309e-70 | -8.615850e-47 |
| Msa0618180 | Msa1460380 | 0.860506 | 1.970135e-63 | -8.615850e-47 |
| Msa0618220 | Msa1460380 | 0.823132 | 1.632773e-53 | -8.615850e-47 |
| Msa0619990 | Msa1460380 | 0.815887 | 7.342231e-52 | -8.615850e-47 |
| Msa0621890 | Msa1460380 | 0.812139 | 4.926833e-51 | -8.615850e-47 |
| Msa0628640 | Msa1460380 | 0.889390 | 2.527819e-73 | -8.615850e-47 |
| Msa0631120 | Msa1460380 | 0.864708 | 1.001369e-64 | -8.615850e-47 |
| Msa0653020 | Msa1460380 | 0.838921 | 2.157845e-57 | -8.615850e-47 |
| Msa0666030 | Msa1460380 | 0.862412 | 5.161572e-64 | -8.615850e-47 |
| Msa0669340 | Msa1460380 | 0.874917 | 4.642478e-68 | -8.615850e-47 |
| Msa0701770 | Msa1460380 | 0.826098 | 3.268561e-54 | -8.615850e-47 |
| Msa0701970 | Msa1460380 | 0.851848 | 6.792249e-61 | -8.615850e-47 |
| Msa0716450 | Msa1460380 | 0.893704 | 4.903931e-75 | -8.615850e-47 |
| Msa0717260 | Msa1460380 | 0.883117 | 5.885053e-71 | -8.615850e-47 |
| Msa0734230 | Msa1460380 | 0.835463 | 1.653539e-56 | -8.615850e-47 |
| Msa0758320 | Msa1460380 | 0.870197 | 1.750535e-66 | -8.615850e-47 |
| Msa0766100 | Msa1460380 | -0.806612 | 7.558771e-50 | -8.615850e-47 |
| Msa0773610 | Msa1460380 | 0.811127 | 8.178425e-51 | -8.615850e-47 |
| Msa0775440 | Msa1460380 | 0.847893 | 8.670317e-60 | -8.615850e-47 |
| Msa0799030 | Msa1460380 | 0.881933 | 1.588853e-70 | -8.615850e-47 |
| Msa0799700 | Msa1460380 | 0.827706 | 1.349164e-54 | -8.615850e-47 |
| Msa0810020 | Msa1460380 | 0.802126 | 6.504991e-49 | -8.615850e-47 |
| Msa0812820 | Msa1460380 | 0.864755 | 9.674311e-65 | -8.615850e-47 |
| Msa0837440 | Msa1460380 | 0.866000 | 3.925116e-65 | -8.615850e-47 |
| Msa0837980 | Msa1460380 | 0.873195 | 1.775167e-67 | -8.615850e-47 |
| Msa0139720 | Msa1460380 | -0.801827 | 7.491606e-49 | -8.615850e-47 |
| Msa0141100 | Msa1460380 | 0.865529 | 5.528634e-65 | -8.615850e-47 |
| Msa0164660 | Msa1460380 | 0.825528 | 4.463306e-54 | -8.615850e-47 |
| Msa0183750 | Msa1460380 | 0.968210 | 2.356773e-128 | -8.615850e-47 |
| Msa0185380 | Msa1460380 | 0.813812 | 2.117331e-51 | -8.615850e-47 |
| Msa0185480 | Msa1460380 | 0.816515 | 5.314156e-52 | -8.615850e-47 |
| Msa0185640 | Msa1460380 | -0.825909 | 3.624490e-54 | -8.615850e-47 |
| Msa0191040 | Msa1460380 | 0.844283 | 8.321566e-59 | -8.615850e-47 |
| Msa0208520 | Msa1460380 | 0.801159 | 1.026707e-48 | -8.615850e-47 |
| Msa0220300 | Msa1460380 | 0.833576 | 4.925087e-56 | -8.615850e-47 |
| Msa0225600 | Msa1460380 | 0.806510 | 7.941739e-50 | -8.615850e-47 |
| Msa0233340 | Msa1460380 | 0.844223 | 8.638111e-59 | -8.615850e-47 |
| Msa1227950 | Msa1460380 | 0.832153 | 1.111821e-55 | -8.615850e-47 |
| Msa1227970 | Msa1460380 | 0.836244 | 1.048246e-56 | -8.615850e-47 |
| Msa1228210 | Msa1460380 | 0.804087 | 2.555984e-49 | -8.615850e-47 |
| Msa1255280 | Msa1460380 | 0.834609 | 2.714882e-56 | -8.615850e-47 |
| Msa1256540 | Msa1460380 | -0.821665 | 3.579055e-53 | -8.615850e-47 |
| Msa1258050 | Msa1460380 | 0.837397 | 5.324936e-57 | -8.615850e-47 |
| Msa1265960 | Msa1460380 | 0.806724 | 7.157241e-50 | -8.615850e-47 |
| Msa1266960 | Msa1460380 | 0.869593 | 2.756584e-66 | -8.615850e-47 |
| Msa1271280 | Msa1460380 | 0.802337 | 5.886543e-49 | -8.615850e-47 |
| Msa1296960 | Msa1460380 | -0.830631 | 2.633860e-55 | -8.615850e-47 |
| Msa1308130 | Msa1460380 | 0.823150 | 1.617331e-53 | -8.615850e-47 |
| Msa1321000 | Msa1460380 | 0.800542 | 1.372408e-48 | -8.615850e-47 |
| Msa1327320 | Msa1460380 | 0.801121 | 1.045290e-48 | -8.615850e-47 |
| Msa1339940 | Msa1460380 | 0.868037 | 8.790714e-66 | -8.615850e-47 |
| Msa1342430 | Msa1460380 | 0.822870 | 1.879529e-53 | -8.615850e-47 |
| Msa1343820 | Msa1460380 | 0.822742 | 2.013495e-53 | -8.615850e-47 |
| Msa0371540 | Msa1460380 | 0.807921 | 3.991343e-50 | -8.615850e-47 |
| Msa0374850 | Msa1460380 | 0.860029 | 2.745911e-63 | -8.615850e-47 |
| Msa0375090 | Msa1460380 | 0.857021 | 2.167890e-62 | -8.615850e-47 |
| Msa0385670 | Msa1460380 | 0.824776 | 6.721234e-54 | -8.615850e-47 |
| Msa0418000 | Msa1460380 | 0.824336 | 8.528147e-54 | -8.615850e-47 |
| Msa0423360 | Msa1460380 | -0.810985 | 8.779213e-51 | -8.615850e-47 |
| Msa0435670 | Msa1460380 | 0.810025 | 1.415067e-50 | -8.615850e-47 |
| Msa0466060 | Msa1460380 | 0.806454 | 8.161580e-50 | -8.615850e-47 |
| Msa0470340 | Msa1460380 | 0.855473 | 6.163871e-62 | -8.615850e-47 |
| Msa0470860 | Msa1460380 | 0.863783 | 1.945780e-64 | -8.615850e-47 |
| Msa0479680 | Msa1460380 | 0.803800 | 2.932707e-49 | -8.615850e-47 |
| Msa0479700 | Msa1460380 | 0.805488 | 1.303168e-49 | -8.615850e-47 |
| Msa0480950 | Msa1460380 | 0.850349 | 1.798461e-60 | -8.615850e-47 |
| Msa0481110 | Msa1460380 | 0.813073 | 3.077662e-51 | -8.615850e-47 |
| Msa0981010 | Msa1460380 | 0.857444 | 1.626083e-62 | -8.615850e-47 |
| Msa1000020 | Msa1460380 | 0.804023 | 2.635284e-49 | -8.615850e-47 |
| Msa1001770 | Msa1460380 | 0.807678 | 4.494785e-50 | -8.615850e-47 |
| Msa1002620 | Msa1460380 | 0.883055 | 6.200294e-71 | -8.615850e-47 |
| Msa1007610 | Msa1460380 | -0.824989 | 5.985636e-54 | -8.615850e-47 |
| Msa1055280 | Msa1460380 | 0.801605 | 8.320346e-49 | -8.615850e-47 |
| Msa1098560 | Msa1460380 | 0.802318 | 5.938337e-49 | -8.615850e-47 |
| Msa0251240 | Msa1460380 | 0.818756 | 1.660093e-52 | -8.615850e-47 |
| Msa0258670 | Msa1460380 | -0.806010 | 1.012312e-49 | -8.615850e-47 |
| Msa0266450 | Msa1460380 | 0.814991 | 1.161978e-51 | -8.615850e-47 |
| Msa0311690 | Msa1460380 | 0.837273 | 5.727523e-57 | -8.615850e-47 |
| Msa0326540 | Msa1460380 | 0.808560 | 2.916407e-50 | -8.615850e-47 |
| Msa0342340 | Msa1460380 | -0.816156 | 6.394791e-52 | -8.615850e-47 |
| Msa1113850 | Msa1460380 | 0.814304 | 1.649316e-51 | -8.615850e-47 |
| Msa1132560 | Msa1460380 | -0.802255 | 6.119096e-49 | -8.615850e-47 |
| Msa1160400 | Msa1460380 | 0.809010 | 2.337392e-50 | -8.615850e-47 |
| Msa1172590 | Msa1460380 | 0.805239 | 1.469682e-49 | -8.615850e-47 |
| Msa1190120 | Msa1460380 | 0.861736 | 8.319419e-64 | -8.615850e-47 |
| Msa1203000 | Msa1460380 | 0.850055 | 2.174968e-60 | -8.615850e-47 |
| Msa1204980 | Msa1460380 | -0.815648 | 8.300914e-52 | -8.615850e-47 |
| Msa1205010 | Msa1460380 | -0.819215 | 1.305874e-52 | -8.615850e-47 |
| Msa1211550 | Msa1460380 | 0.850489 | 1.643405e-60 | -8.615850e-47 |
| Msa1217940 | Msa1460380 | 0.835093 | 2.050769e-56 | -8.615850e-47 |
| Msa1219260 | Msa1460380 | 0.865248 | 6.774642e-65 | -8.615850e-47 |
| Msa1223460 | Msa1460380 | 0.810711 | 1.006201e-50 | -8.615850e-47 |
| Msa0517340 | Msa1460380 | 0.814174 | 1.762062e-51 | -8.615850e-47 |
| Msa0526640 | Msa1460380 | -0.802616 | 5.154760e-49 | -8.615850e-47 |
| Msa0531430 | Msa1460380 | 0.895987 | 5.680063e-76 | -8.615850e-47 |
| Msa0534570 | Msa1460380 | 0.840775 | 7.095432e-58 | -8.615850e-47 |
| Msa0534590 | Msa1460380 | 0.868453 | 6.455196e-66 | -8.615850e-47 |
| Msa0557680 | Msa1460380 | 0.835887 | 1.291749e-56 | -8.615850e-47 |
| Msa0565600 | Msa1460380 | 0.873446 | 1.460788e-67 | -8.615850e-47 |
| Msa0590800 | Msa1460380 | 0.848413 | 6.227026e-60 | -8.615850e-47 |
| Msa0845590 | Msa1460380 | -0.820827 | 5.583621e-53 | -8.615850e-47 |
| Msa0853320 | Msa1460380 | 0.849416 | 3.280502e-60 | -8.615850e-47 |
| Msa0903730 | Msa1460380 | 0.800104 | 1.685389e-48 | -8.615850e-47 |
| Msa0944770 | Msa1460380 | 0.818039 | 2.413343e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1460380 | MtrunA17_Chr1g0210721 | 88.850 | 287 | 17 | 1 | 1 | 272 | 10 | 296 | 0.0 | 523 |
| Msa1460380 | MtrunA17_Chr1g0210731 | 62.458 | 301 | 86 | 5 | 1 | 276 | 7 | 305 | 3.56e-124 | 356 |
| Msa1460380 | MtrunA17_Chr2g0287431 | 43.772 | 281 | 139 | 3 | 2 | 263 | 11 | 291 | 1.84e-72 | 225 |
| Msa1460380 | MtrunA17_Chr4g0033971 | 29.218 | 243 | 152 | 5 | 2 | 224 | 11 | 253 | 1.72e-26 | 105 |
| Msa1460380 | MtrunA17_Chr5g0409571 | 25.191 | 262 | 170 | 7 | 2 | 242 | 11 | 267 | 2.71e-15 | 73.9 |
| Msa1460380 | MtrunA17_Chr8g0369411 | 26.744 | 258 | 161 | 9 | 2 | 237 | 11 | 262 | 3.50e-15 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1460380 | AT1G55230.1 | 46.127 | 284 | 128 | 6 | 2 | 263 | 11 | 291 | 2.02e-80 | 245 |
| Msa1460380 | AT1G55240.1 | 43.110 | 283 | 139 | 4 | 2 | 263 | 11 | 292 | 4.17e-75 | 232 |
| Msa1460380 | AT5G19870.1 | 42.105 | 266 | 135 | 3 | 2 | 248 | 11 | 276 | 5.91e-69 | 215 |
| Msa1460380 | AT1G49470.1 | 28.328 | 293 | 171 | 9 | 2 | 263 | 11 | 295 | 2.73e-21 | 91.7 |
| Msa1460380 | AT1G32127.2 | 28.846 | 208 | 122 | 6 | 2 | 186 | 11 | 215 | 3.96e-15 | 73.9 |
| Msa1460380 | AT1G32127.1 | 28.846 | 208 | 122 | 6 | 2 | 186 | 11 | 215 | 3.96e-15 | 73.9 |
Find 50 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGATTATGGCTATAATTTA+TGG | 0.111898 | tig0040873:+9062 | Msa1460380:CDS |
| CTCTAAGTATCTACTTATTT+TGG | 0.153608 | tig0040873:-8437 | Msa1460380:intergenic |
| CCAACACTTCATTACCCTTT+TGG | 0.220978 | tig0040873:+8407 | Msa1460380:CDS |
| CAATTCAGCTGGTTCTTTAT+TGG | 0.239215 | tig0040873:+9011 | Msa1460380:CDS |
| GGTTTAGTGCTTTCTATATC+TGG | 0.242800 | tig0040873:+8885 | Msa1460380:CDS |
| TCAACCCAAAGGTTGCTTCT+TGG | 0.301483 | tig0040873:+8911 | Msa1460380:CDS |
| GGCTGAGAAGATTGCGCAAC+TGG | 0.317645 | tig0040873:-8476 | Msa1460380:intergenic |
| AGGTTTGTTCATTATGTTCA+TGG | 0.326708 | tig0040873:+8863 | Msa1460380:CDS |
| TGTGTTCAACTTGGTGGATA+TGG | 0.336618 | tig0040873:-8543 | Msa1460380:intergenic |
| GTTACAACCCTTATGGGAAT+TGG | 0.339254 | tig0040873:+8786 | Msa1460380:CDS |
| AGTGTCTTTCTACTTGATTA+TGG | 0.354291 | tig0040873:+9049 | Msa1460380:CDS |
| TTGCTTGCAGCTATAGCATT+TGG | 0.358644 | tig0040873:+8666 | Msa1460380:CDS |
| TGGAAAACCAATTCCCATAA+GGG | 0.368114 | tig0040873:-8793 | Msa1460380:intergenic |
| ATATTCCAAGAAGCAACCTT+TGG | 0.390404 | tig0040873:-8916 | Msa1460380:intergenic |
| TTGGAAAACCAATTCCCATA+AGG | 0.405774 | tig0040873:-8794 | Msa1460380:intergenic |
| AAGGAGATCAACTTATGATT+AGG | 0.413259 | tig0040873:+8940 | Msa1460380:CDS |
| AGAAGTCACATGGGGATAGA+AGG | 0.425426 | tig0040873:+8720 | Msa1460380:CDS |
| CCAGATGATTTCTACTAGAA+TGG | 0.432826 | tig0040873:+9172 | Msa1460380:CDS |
| TGGTGAATCTTCAATTCAGC+TGG | 0.442803 | tig0040873:+9000 | Msa1460380:CDS |
| GTGGATATGGTTGGTAGGAA+TGG | 0.447015 | tig0040873:-8530 | Msa1460380:intergenic |
| CCATTCTAGTAGAAATCATC+TGG | 0.450188 | tig0040873:-9172 | Msa1460380:intergenic |
| GGTTTGTTCATTATGTTCAT+GGG | 0.458171 | tig0040873:+8864 | Msa1460380:CDS |
| TATTCCAAGAAGCAACCTTT+GGG | 0.461299 | tig0040873:-8915 | Msa1460380:intergenic |
| TATGCATCGTGCTGTTTCAT+TGG | 0.468772 | tig0040873:+8980 | Msa1460380:CDS |
| GATTAGGTGCAATGATGAAA+AGG | 0.487514 | tig0040873:+8956 | Msa1460380:CDS |
| GGTTGCTTCTTGGAATATGA+AGG | 0.488311 | tig0040873:+8921 | Msa1460380:CDS |
| GGAGTTTGAGGTAGTTGAAG+AGG | 0.502910 | tig0040873:-8369 | Msa1460380:intergenic |
| AACAAACAAAGTGGAGTTTG+AGG | 0.514586 | tig0040873:-8381 | Msa1460380:intergenic |
| TGAACATAATGAACAAACCT+TGG | 0.523714 | tig0040873:-8860 | Msa1460380:intergenic |
| TGTGACTTCTTGAATGAAGA+TGG | 0.525692 | tig0040873:-8707 | Msa1460380:intergenic |
| ATCTTCGAAGCTTCTAGTAA+TGG | 0.527933 | tig0040873:+8505 | Msa1460380:CDS |
| CCAAAAGGGTAATGAAGTGT+TGG | 0.529229 | tig0040873:-8407 | Msa1460380:intergenic |
| TGGAAGTGTGTTCAACTTGG+TGG | 0.532303 | tig0040873:-8549 | Msa1460380:intergenic |
| TCTGTTAGCATGATCTTCCA+AGG | 0.532759 | tig0040873:+8843 | Msa1460380:CDS |
| GGAGTGCGATTCACTGATGA+AGG | 0.536386 | tig0040873:+9094 | Msa1460380:CDS |
| CTTAGAGCTTTATTTCATTG+TGG | 0.561652 | tig0040873:+8453 | Msa1460380:CDS |
| TTCAACTTGGTGGATATGGT+TGG | 0.563681 | tig0040873:-8539 | Msa1460380:intergenic |
| TATGAAGAAAGACACAGTAA+TGG | 0.570471 | tig0040873:-8569 | Msa1460380:intergenic |
| AAGGAGGAACAGTACGGTGA+AGG | 0.576386 | tig0040873:+9113 | Msa1460380:CDS |
| ACTTGGTGGATATGGTTGGT+AGG | 0.580887 | tig0040873:-8535 | Msa1460380:intergenic |
| GAACAGTACGGTGAAGGCGA+TGG | 0.598192 | tig0040873:+9119 | Msa1460380:CDS |
| ATATCTGGTTATCAACCCAA+AGG | 0.602519 | tig0040873:+8900 | Msa1460380:CDS |
| TCTTCATTCAAGAAGTCACA+TGG | 0.616300 | tig0040873:+8710 | Msa1460380:CDS |
| TAATGGAAGTGTGTTCAACT+TGG | 0.624797 | tig0040873:-8552 | Msa1460380:intergenic |
| TGTTGGAAGAACAAACAAAG+TGG | 0.643408 | tig0040873:-8390 | Msa1460380:intergenic |
| CTTCATTCAAGAAGTCACAT+GGG | 0.655694 | tig0040873:+8711 | Msa1460380:CDS |
| GTGCGATTCACTGATGAAGG+AGG | 0.666959 | tig0040873:+9097 | Msa1460380:CDS |
| AGAAGCTTCGAAGATTTCTG+CGG | 0.668279 | tig0040873:-8497 | Msa1460380:intergenic |
| CTGATGAAGGAGGAACAGTA+CGG | 0.675878 | tig0040873:+9107 | Msa1460380:CDS |
| TTCATTCAAGAAGTCACATG+GGG | 0.680400 | tig0040873:+8712 | Msa1460380:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTCTATCAAGAATTA+TGG | - | tig0040873:8608-8627 | Msa1460380:intergenic | 15.0% |
| !!! | ATTTTTTCTATCAAGAATTA+TGG | - | tig0040873:8608-8627 | Msa1460380:intergenic | 15.0% |
| !! | TTGATTATGGCTATAATTTA+TGG | + | tig0040873:9062-9081 | Msa1460380:CDS | 20.0% |
| !! | TATAATTTATGGTGAAAAAG+TGG | + | tig0040873:9073-9092 | Msa1460380:CDS | 20.0% |
| !! | TTGATTATGGCTATAATTTA+TGG | + | tig0040873:9062-9081 | Msa1460380:CDS | 20.0% |
| !! | TATAATTTATGGTGAAAAAG+TGG | + | tig0040873:9073-9092 | Msa1460380:CDS | 20.0% |
| !!! | AAGTATCTACTTATTTTGGT+GGG | - | tig0040873:8436-8455 | Msa1460380:intergenic | 25.0% |
| !!! | TAAGTATCTACTTATTTTGG+TGG | - | tig0040873:8437-8456 | Msa1460380:intergenic | 25.0% |
| !! | CTCTAAGTATCTACTTATTT+TGG | - | tig0040873:8440-8459 | Msa1460380:intergenic | 25.0% |
| ! | AAACATACCAAAAAACTCTT+TGG | - | tig0040873:8816-8835 | Msa1460380:intergenic | 25.0% |
| !!! | AAGTATCTACTTATTTTGGT+GGG | - | tig0040873:8436-8455 | Msa1460380:intergenic | 25.0% |
| !!! | TAAGTATCTACTTATTTTGG+TGG | - | tig0040873:8437-8456 | Msa1460380:intergenic | 25.0% |
| !! | CTCTAAGTATCTACTTATTT+TGG | - | tig0040873:8440-8459 | Msa1460380:intergenic | 25.0% |
| ! | AAACATACCAAAAAACTCTT+TGG | - | tig0040873:8816-8835 | Msa1460380:intergenic | 25.0% |
| ! | TTTTCTTTGTACTTGGTTTC+TGG | + | tig0040873:8344-8363 | Msa1460380:CDS | 30.0% |
| !! | CTTAGAGCTTTATTTCATTG+TGG | + | tig0040873:8453-8472 | Msa1460380:CDS | 30.0% |
| TATGAAGAAAGACACAGTAA+TGG | - | tig0040873:8572-8591 | Msa1460380:intergenic | 30.0% | |
| TCTATCAAGAATTATGGCAA+AGG | - | tig0040873:8602-8621 | Msa1460380:intergenic | 30.0% | |
| !!! | TTGCAAGTTTTGATTCTGAT+AGG | + | tig0040873:8759-8778 | Msa1460380:CDS | 30.0% |
| ! | TGGTTTTCCAAAGAGTTTTT+TGG | + | tig0040873:8806-8825 | Msa1460380:CDS | 30.0% |
| TGAACATAATGAACAAACCT+TGG | - | tig0040873:8863-8882 | Msa1460380:intergenic | 30.0% | |
| ! | AGGTTTGTTCATTATGTTCA+TGG | + | tig0040873:8863-8882 | Msa1460380:CDS | 30.0% |
| ! | GGTTTGTTCATTATGTTCAT+GGG | + | tig0040873:8864-8883 | Msa1460380:CDS | 30.0% |
| AAGGAGATCAACTTATGATT+AGG | + | tig0040873:8940-8959 | Msa1460380:CDS | 30.0% | |
| AGTGTCTTTCTACTTGATTA+TGG | + | tig0040873:9049-9068 | Msa1460380:CDS | 30.0% | |
| ! | TTTTCTTTGTACTTGGTTTC+TGG | + | tig0040873:8344-8363 | Msa1460380:CDS | 30.0% |
| !! | CTTAGAGCTTTATTTCATTG+TGG | + | tig0040873:8453-8472 | Msa1460380:CDS | 30.0% |
| TATGAAGAAAGACACAGTAA+TGG | - | tig0040873:8572-8591 | Msa1460380:intergenic | 30.0% | |
| TCTATCAAGAATTATGGCAA+AGG | - | tig0040873:8602-8621 | Msa1460380:intergenic | 30.0% | |
| !!! | TTGCAAGTTTTGATTCTGAT+AGG | + | tig0040873:8759-8778 | Msa1460380:CDS | 30.0% |
| ! | TGGTTTTCCAAAGAGTTTTT+TGG | + | tig0040873:8806-8825 | Msa1460380:CDS | 30.0% |
| TGAACATAATGAACAAACCT+TGG | - | tig0040873:8863-8882 | Msa1460380:intergenic | 30.0% | |
| ! | AGGTTTGTTCATTATGTTCA+TGG | + | tig0040873:8863-8882 | Msa1460380:CDS | 30.0% |
| ! | GGTTTGTTCATTATGTTCAT+GGG | + | tig0040873:8864-8883 | Msa1460380:CDS | 30.0% |
| AAGGAGATCAACTTATGATT+AGG | + | tig0040873:8940-8959 | Msa1460380:CDS | 30.0% | |
| AGTGTCTTTCTACTTGATTA+TGG | + | tig0040873:9049-9068 | Msa1460380:CDS | 30.0% | |
| !! | GGGTTTGTTTTCTTTGTACT+TGG | + | tig0040873:8337-8356 | Msa1460380:CDS | 35.0% |
| AACAAACAAAGTGGAGTTTG+AGG | - | tig0040873:8384-8403 | Msa1460380:intergenic | 35.0% | |
| TGTTGGAAGAACAAACAAAG+TGG | - | tig0040873:8393-8412 | Msa1460380:intergenic | 35.0% | |
| !! | ATTTTGGTGGGAAACCAAAA+GGG | - | tig0040873:8424-8443 | Msa1460380:intergenic | 35.0% |
| !!! | TATTTTGGTGGGAAACCAAA+AGG | - | tig0040873:8425-8444 | Msa1460380:intergenic | 35.0% |
| ATCTTCGAAGCTTCTAGTAA+TGG | + | tig0040873:8505-8524 | Msa1460380:CDS | 35.0% | |
| ! | TAATGGAAGTGTGTTCAACT+TGG | - | tig0040873:8555-8574 | Msa1460380:intergenic | 35.0% |
| TGTGACTTCTTGAATGAAGA+TGG | - | tig0040873:8710-8729 | Msa1460380:intergenic | 35.0% | |
| TCTTCATTCAAGAAGTCACA+TGG | + | tig0040873:8710-8729 | Msa1460380:CDS | 35.0% | |
| CTTCATTCAAGAAGTCACAT+GGG | + | tig0040873:8711-8730 | Msa1460380:CDS | 35.0% | |
| TTCATTCAAGAAGTCACATG+GGG | + | tig0040873:8712-8731 | Msa1460380:CDS | 35.0% | |
| !!! | AGGTTTTGTTACAACCCTTA+TGG | + | tig0040873:8779-8798 | Msa1460380:CDS | 35.0% |
| !!! | GGTTTTGTTACAACCCTTAT+GGG | + | tig0040873:8780-8799 | Msa1460380:CDS | 35.0% |
| TGGAAAACCAATTCCCATAA+GGG | - | tig0040873:8796-8815 | Msa1460380:intergenic | 35.0% | |
| TTGGAAAACCAATTCCCATA+AGG | - | tig0040873:8797-8816 | Msa1460380:intergenic | 35.0% | |
| GGTTTAGTGCTTTCTATATC+TGG | + | tig0040873:8885-8904 | Msa1460380:CDS | 35.0% | |
| ATATCTGGTTATCAACCCAA+AGG | + | tig0040873:8900-8919 | Msa1460380:CDS | 35.0% | |
| TATTCCAAGAAGCAACCTTT+GGG | - | tig0040873:8918-8937 | Msa1460380:intergenic | 35.0% | |
| ATATTCCAAGAAGCAACCTT+TGG | - | tig0040873:8919-8938 | Msa1460380:intergenic | 35.0% | |
| GATTAGGTGCAATGATGAAA+AGG | + | tig0040873:8956-8975 | Msa1460380:CDS | 35.0% | |
| ! | CAATTCAGCTGGTTCTTTAT+TGG | + | tig0040873:9011-9030 | Msa1460380:CDS | 35.0% |
| CCATTCTAGTAGAAATCATC+TGG | - | tig0040873:9175-9194 | Msa1460380:intergenic | 35.0% | |
| CCAGATGATTTCTACTAGAA+TGG | + | tig0040873:9172-9191 | Msa1460380:CDS | 35.0% | |
| !! | GGGTTTGTTTTCTTTGTACT+TGG | + | tig0040873:8337-8356 | Msa1460380:CDS | 35.0% |
| AACAAACAAAGTGGAGTTTG+AGG | - | tig0040873:8384-8403 | Msa1460380:intergenic | 35.0% | |
| TGTTGGAAGAACAAACAAAG+TGG | - | tig0040873:8393-8412 | Msa1460380:intergenic | 35.0% | |
| !! | ATTTTGGTGGGAAACCAAAA+GGG | - | tig0040873:8424-8443 | Msa1460380:intergenic | 35.0% |
| !!! | TATTTTGGTGGGAAACCAAA+AGG | - | tig0040873:8425-8444 | Msa1460380:intergenic | 35.0% |
| ATCTTCGAAGCTTCTAGTAA+TGG | + | tig0040873:8505-8524 | Msa1460380:CDS | 35.0% | |
| ! | TAATGGAAGTGTGTTCAACT+TGG | - | tig0040873:8555-8574 | Msa1460380:intergenic | 35.0% |
| TGTGACTTCTTGAATGAAGA+TGG | - | tig0040873:8710-8729 | Msa1460380:intergenic | 35.0% | |
| TCTTCATTCAAGAAGTCACA+TGG | + | tig0040873:8710-8729 | Msa1460380:CDS | 35.0% | |
| CTTCATTCAAGAAGTCACAT+GGG | + | tig0040873:8711-8730 | Msa1460380:CDS | 35.0% | |
| TTCATTCAAGAAGTCACATG+GGG | + | tig0040873:8712-8731 | Msa1460380:CDS | 35.0% | |
| !!! | AGGTTTTGTTACAACCCTTA+TGG | + | tig0040873:8779-8798 | Msa1460380:CDS | 35.0% |
| !!! | GGTTTTGTTACAACCCTTAT+GGG | + | tig0040873:8780-8799 | Msa1460380:CDS | 35.0% |
| TGGAAAACCAATTCCCATAA+GGG | - | tig0040873:8796-8815 | Msa1460380:intergenic | 35.0% | |
| TTGGAAAACCAATTCCCATA+AGG | - | tig0040873:8797-8816 | Msa1460380:intergenic | 35.0% | |
| GGTTTAGTGCTTTCTATATC+TGG | + | tig0040873:8885-8904 | Msa1460380:CDS | 35.0% | |
| ATATCTGGTTATCAACCCAA+AGG | + | tig0040873:8900-8919 | Msa1460380:CDS | 35.0% | |
| TATTCCAAGAAGCAACCTTT+GGG | - | tig0040873:8918-8937 | Msa1460380:intergenic | 35.0% | |
| ATATTCCAAGAAGCAACCTT+TGG | - | tig0040873:8919-8938 | Msa1460380:intergenic | 35.0% | |
| GATTAGGTGCAATGATGAAA+AGG | + | tig0040873:8956-8975 | Msa1460380:CDS | 35.0% | |
| ! | CAATTCAGCTGGTTCTTTAT+TGG | + | tig0040873:9011-9030 | Msa1460380:CDS | 35.0% |
| CCATTCTAGTAGAAATCATC+TGG | - | tig0040873:9175-9194 | Msa1460380:intergenic | 35.0% | |
| CCAGATGATTTCTACTAGAA+TGG | + | tig0040873:9172-9191 | Msa1460380:CDS | 35.0% | |
| CCAAAAGGGTAATGAAGTGT+TGG | - | tig0040873:8410-8429 | Msa1460380:intergenic | 40.0% | |
| ! | CCAACACTTCATTACCCTTT+TGG | + | tig0040873:8407-8426 | Msa1460380:CDS | 40.0% |
| AGAAGCTTCGAAGATTTCTG+CGG | - | tig0040873:8500-8519 | Msa1460380:intergenic | 40.0% | |
| ! | TTCAACTTGGTGGATATGGT+TGG | - | tig0040873:8542-8561 | Msa1460380:intergenic | 40.0% |
| ! | TGTGTTCAACTTGGTGGATA+TGG | - | tig0040873:8546-8565 | Msa1460380:intergenic | 40.0% |
| TTGCTTGCAGCTATAGCATT+TGG | + | tig0040873:8666-8685 | Msa1460380:CDS | 40.0% | |
| GTTACAACCCTTATGGGAAT+TGG | + | tig0040873:8786-8805 | Msa1460380:CDS | 40.0% | |
| TCTGTTAGCATGATCTTCCA+AGG | + | tig0040873:8843-8862 | Msa1460380:CDS | 40.0% | |
| GGTTGCTTCTTGGAATATGA+AGG | + | tig0040873:8921-8940 | Msa1460380:CDS | 40.0% | |
| !! | TATGCATCGTGCTGTTTCAT+TGG | + | tig0040873:8980-8999 | Msa1460380:CDS | 40.0% |
| TGGTGAATCTTCAATTCAGC+TGG | + | tig0040873:9000-9019 | Msa1460380:CDS | 40.0% | |
| CCAAAAGGGTAATGAAGTGT+TGG | - | tig0040873:8410-8429 | Msa1460380:intergenic | 40.0% | |
| ! | CCAACACTTCATTACCCTTT+TGG | + | tig0040873:8407-8426 | Msa1460380:CDS | 40.0% |
| AGAAGCTTCGAAGATTTCTG+CGG | - | tig0040873:8500-8519 | Msa1460380:intergenic | 40.0% | |
| ! | TTCAACTTGGTGGATATGGT+TGG | - | tig0040873:8542-8561 | Msa1460380:intergenic | 40.0% |
| ! | TGTGTTCAACTTGGTGGATA+TGG | - | tig0040873:8546-8565 | Msa1460380:intergenic | 40.0% |
| TTGCTTGCAGCTATAGCATT+TGG | + | tig0040873:8666-8685 | Msa1460380:CDS | 40.0% | |
| GTTACAACCCTTATGGGAAT+TGG | + | tig0040873:8786-8805 | Msa1460380:CDS | 40.0% | |
| TCTGTTAGCATGATCTTCCA+AGG | + | tig0040873:8843-8862 | Msa1460380:CDS | 40.0% | |
| GGTTGCTTCTTGGAATATGA+AGG | + | tig0040873:8921-8940 | Msa1460380:CDS | 40.0% | |
| !! | TATGCATCGTGCTGTTTCAT+TGG | + | tig0040873:8980-8999 | Msa1460380:CDS | 40.0% |
| TGGTGAATCTTCAATTCAGC+TGG | + | tig0040873:9000-9019 | Msa1460380:CDS | 40.0% | |
| ! | GGAGTTTGAGGTAGTTGAAG+AGG | - | tig0040873:8372-8391 | Msa1460380:intergenic | 45.0% |
| !! | GTGGATATGGTTGGTAGGAA+TGG | - | tig0040873:8533-8552 | Msa1460380:intergenic | 45.0% |
| ! | ACTTGGTGGATATGGTTGGT+AGG | - | tig0040873:8538-8557 | Msa1460380:intergenic | 45.0% |
| ! | TGGAAGTGTGTTCAACTTGG+TGG | - | tig0040873:8552-8571 | Msa1460380:intergenic | 45.0% |
| AGAAGTCACATGGGGATAGA+AGG | + | tig0040873:8720-8739 | Msa1460380:CDS | 45.0% | |
| TCAACCCAAAGGTTGCTTCT+TGG | + | tig0040873:8911-8930 | Msa1460380:CDS | 45.0% | |
| CTGATGAAGGAGGAACAGTA+CGG | + | tig0040873:9107-9126 | Msa1460380:CDS | 45.0% | |
| ! | GGAGTTTGAGGTAGTTGAAG+AGG | - | tig0040873:8372-8391 | Msa1460380:intergenic | 45.0% |
| !! | GTGGATATGGTTGGTAGGAA+TGG | - | tig0040873:8533-8552 | Msa1460380:intergenic | 45.0% |
| ! | ACTTGGTGGATATGGTTGGT+AGG | - | tig0040873:8538-8557 | Msa1460380:intergenic | 45.0% |
| ! | TGGAAGTGTGTTCAACTTGG+TGG | - | tig0040873:8552-8571 | Msa1460380:intergenic | 45.0% |
| AGAAGTCACATGGGGATAGA+AGG | + | tig0040873:8720-8739 | Msa1460380:CDS | 45.0% | |
| TCAACCCAAAGGTTGCTTCT+TGG | + | tig0040873:8911-8930 | Msa1460380:CDS | 45.0% | |
| CTGATGAAGGAGGAACAGTA+CGG | + | tig0040873:9107-9126 | Msa1460380:CDS | 45.0% | |
| GGAGTGCGATTCACTGATGA+AGG | + | tig0040873:9094-9113 | Msa1460380:CDS | 50.0% | |
| GTGCGATTCACTGATGAAGG+AGG | + | tig0040873:9097-9116 | Msa1460380:CDS | 50.0% | |
| AAGGAGGAACAGTACGGTGA+AGG | + | tig0040873:9113-9132 | Msa1460380:CDS | 50.0% | |
| GGAGTGCGATTCACTGATGA+AGG | + | tig0040873:9094-9113 | Msa1460380:CDS | 50.0% | |
| GTGCGATTCACTGATGAAGG+AGG | + | tig0040873:9097-9116 | Msa1460380:CDS | 50.0% | |
| AAGGAGGAACAGTACGGTGA+AGG | + | tig0040873:9113-9132 | Msa1460380:CDS | 50.0% | |
| GGCTGAGAAGATTGCGCAAC+TGG | - | tig0040873:8479-8498 | Msa1460380:intergenic | 55.0% | |
| GAACAGTACGGTGAAGGCGA+TGG | + | tig0040873:9119-9138 | Msa1460380:CDS | 55.0% | |
| GGCTGAGAAGATTGCGCAAC+TGG | - | tig0040873:8479-8498 | Msa1460380:intergenic | 55.0% | |
| GAACAGTACGGTGAAGGCGA+TGG | + | tig0040873:9119-9138 | Msa1460380:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0040873 | gene | 8334 | 9208 | 8334 | ID=Msa1460380;Name=Msa1460380 |
| tig0040873 | mRNA | 8334 | 9208 | 8334 | ID=Msa1460380-mRNA-1;Parent=Msa1460380;Name=Msa1460380-mRNA-1;_AED=0.28;_eAED=0.28;_QI=0|0|0|1|0|0|2|0|276 |
| tig0040873 | exon | 8334 | 8576 | 8334 | ID=Msa1460380-mRNA-1:exon:22694;Parent=Msa1460380-mRNA-1 |
| tig0040873 | exon | 8621 | 9208 | 8621 | ID=Msa1460380-mRNA-1:exon:22695;Parent=Msa1460380-mRNA-1 |
| tig0040873 | CDS | 8334 | 8576 | 8334 | ID=Msa1460380-mRNA-1:cds;Parent=Msa1460380-mRNA-1 |
| tig0040873 | CDS | 8621 | 9208 | 8621 | ID=Msa1460380-mRNA-1:cds;Parent=Msa1460380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
