AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0900090

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0900090 MtrunA17_Chr6g0486041 99.522 209 1 0 1 209 1 209 4.13e-157 432
Msa0900090 MtrunA17_Chr3g0117931 76.471 204 45 2 2 205 4 204 3.11e-117 332
Msa0900090 MtrunA17_Chr4g0037021 75.000 200 47 1 1 200 1 197 2.09e-113 322
Msa0900090 MtrunA17_Chr2g0325101 81.461 178 33 0 1 178 1 178 9.46e-110 312
Msa0900090 MtrunA17_Chr8g0371501 79.775 178 36 0 1 178 1 178 1.74e-106 304
Msa0900090 MtrunA17_Chr5g0405791 79.213 178 37 0 1 178 1 178 7.31e-105 300
Msa0900090 MtrunA17_Chr4g0046211 78.322 143 31 0 1 143 1 143 1.87e-83 244
Msa0900090 MtrunA17_Chr3g0130271 32.022 178 107 5 7 181 13 179 1.95e-26 100
Msa0900090 MtrunA17_Chr7g0265001 32.967 182 107 5 8 185 18 188 4.72e-26 100
Msa0900090 MtrunA17_Chr8g0384311 32.402 179 106 5 6 181 13 179 2.66e-25 97.8
Msa0900090 MtrunA17_Chr6g0458081 32.597 181 108 5 1 179 1 169 2.98e-25 97.8
Msa0900090 MtrunA17_Chr2g0290891 32.558 172 102 5 1 170 1 160 3.16e-24 95.1
Msa0900090 MtrunA17_Chr1g0212521 31.737 167 101 5 6 170 15 170 8.03e-24 94.4
Msa0900090 MtrunA17_Chr1g0182321 31.737 167 101 5 6 170 15 170 1.21e-23 94.0
Msa0900090 MtrunA17_Chr4g0030911 31.737 167 101 5 6 170 15 170 1.74e-23 93.2
Msa0900090 MtrunA17_Chr1g0199331 32.203 177 105 6 7 180 32 196 1.78e-23 92.8
Msa0900090 MtrunA17_Chr1g0182301 31.737 167 101 5 6 170 15 170 1.89e-23 93.2
Msa0900090 MtrunA17_Chr8g0335471 31.220 205 116 8 6 197 8 200 6.17e-23 91.7
Msa0900090 MtrunA17_Chr7g0263071 31.138 167 102 5 6 170 15 170 7.52e-23 91.7
Msa0900090 MtrunA17_Chr1g0159481 30.726 179 109 5 6 181 17 183 7.76e-23 91.7
Msa0900090 MtrunA17_Chr4g0055651 31.737 167 100 5 6 170 8 162 9.41e-23 91.3
Msa0900090 MtrunA17_Chr2g0331691 31.250 208 119 7 6 198 10 208 3.35e-22 89.7
Msa0900090 MtrunA17_Chr8g0390561 32.222 180 107 6 8 184 11 178 5.29e-22 89.0
Msa0900090 MtrunA17_Chr1g0197331 30.244 205 117 8 8 197 17 210 6.24e-22 89.4
Msa0900090 MtrunA17_Chr1g0180291 31.319 182 109 6 8 185 16 185 6.65e-22 89.0
Msa0900090 MtrunA17_Chr1g0201121 29.327 208 123 6 6 198 8 206 1.04e-21 88.6
Msa0900090 MtrunA17_Chr7g0250531 31.138 167 101 5 6 170 8 162 1.26e-21 88.2
Msa0900090 MtrunA17_Chr4g0055081 33.939 165 95 5 8 170 11 163 2.69e-21 87.4
Msa0900090 MtrunA17_Chr3g0112681 31.551 187 114 5 6 190 12 186 4.39e-21 87.0
Msa0900090 MtrunA17_Chr8g0349711 29.651 172 107 5 1 170 1 160 5.10e-21 86.7
Msa0900090 MtrunA17_Chr8g0382221 35.152 165 93 5 8 170 11 163 5.38e-21 86.7
Msa0900090 MtrunA17_Chr4g0034871 29.612 206 122 5 6 197 8 204 2.06e-20 85.1
Msa0900090 MtrunA17_Chr6g0466301 28.986 207 124 7 6 198 8 205 2.37e-20 84.7
Msa0900090 MtrunA17_Chr6g0465491 28.986 207 124 7 6 198 8 205 2.37e-20 84.7
Msa0900090 MtrunA17_Chr4g0004661 30.918 207 119 7 6 197 64 261 2.73e-20 85.9
Msa0900090 MtrunA17_Chr4g0032201 29.293 198 123 6 6 201 12 194 2.93e-20 84.7
Msa0900090 MtrunA17_Chr8g0349681 31.395 172 104 5 1 170 379 538 2.99e-20 88.2
Msa0900090 MtrunA17_Chr8g0349681 30.233 172 106 5 1 170 8 167 4.87e-20 87.4
Msa0900090 MtrunA17_Chr8g0349681 29.651 172 107 5 1 170 170 329 3.03e-19 85.5
Msa0900090 MtrunA17_Chr5g0400131 33.939 165 95 5 8 170 11 163 3.27e-20 84.7
Msa0900090 MtrunA17_Chr2g0276931 28.814 177 109 6 1 172 1 165 3.88e-20 84.3
Msa0900090 MtrunA17_Chr2g0327911 28.947 190 120 6 6 191 15 193 4.14e-20 84.3
Msa0900090 MtrunA17_Chr3g0123971 34.545 165 94 5 8 170 11 163 4.25e-20 84.3
Msa0900090 MtrunA17_Chr2g0319951 36.364 121 74 3 6 124 13 132 5.46e-20 84.3
Msa0900090 MtrunA17_Chr8g0381841 29.412 187 118 5 8 192 19 193 6.11e-20 84.3
Msa0900090 MtrunA17_Chr7g0275991 33.333 165 96 5 8 170 22 174 6.19e-20 84.3
Msa0900090 MtrunA17_Chr4g0040781 37.500 128 77 3 6 131 13 139 6.80e-20 84.0
Msa0900090 MtrunA17_Chr8g0346421 38.971 136 73 5 8 134 28 162 1.04e-19 84.0
Msa0900090 MtrunA17_Chr3g0123821 28.877 187 119 5 8 192 18 192 1.20e-19 83.6
Msa0900090 MtrunA17_Chr2g0276941 30.435 184 114 5 6 187 15 186 2.11e-19 82.8
Msa0900090 MtrunA17_Chr4g0046261 36.290 124 76 3 6 127 13 135 2.26e-19 82.4
Msa0900090 MtrunA17_Chr8g0351861 30.526 190 118 5 6 193 16 193 2.29e-19 82.8
Msa0900090 MtrunA17_Chr2g0315551 36.364 121 74 3 6 124 13 132 2.87e-19 82.4
Msa0900090 MtrunA17_Chr2g0283131 30.270 185 113 6 6 187 13 184 3.73e-19 82.0
Msa0900090 MtrunA17_Chr3g0109721 31.138 167 97 5 8 170 12 164 9.56e-19 80.5
Msa0900090 MtrunA17_Chr5g0433561 30.539 167 98 5 8 170 12 164 1.36e-18 80.1
Msa0900090 MtrunA17_Chr8g0392931 30.108 186 116 5 6 189 14 187 2.57e-18 79.7
Msa0900090 MtrunA17_Chr1g0174281 37.607 117 70 3 8 122 17 132 2.59e-18 79.7
Msa0900090 MtrunA17_Chr8g0383261 28.986 207 123 6 6 198 12 208 3.30e-18 79.3
Msa0900090 MtrunA17_Chr7g0231131 37.607 117 70 3 8 122 17 132 9.88e-18 78.2
Msa0900090 MtrunA17_Chr7g0234201 29.834 181 113 5 6 184 13 181 1.29e-17 77.8
Msa0900090 MtrunA17_Chr1g0189361 28.421 190 122 5 6 193 14 191 2.44e-17 77.4
Msa0900090 MtrunA17_Chr6g0482721 27.979 193 125 5 6 196 12 192 7.11e-17 75.9
Msa0900090 MtrunA17_Chr7g0214241 27.586 203 133 5 6 206 15 205 7.31e-17 75.9
Msa0900090 MtrunA17_Chr2g0325091 35.537 121 75 3 6 124 11 130 2.64e-15 71.6
Msa0900090 MtrunA17_Chr3g0138121 33.051 118 77 2 7 123 14 130 4.90e-14 68.2
Msa0900090 MtrunA17_Chr3g0138111 33.051 118 77 2 7 123 14 130 5.05e-14 68.2
Msa0900090 MtrunA17_Chr3g0138101 33.051 118 77 2 7 123 14 130 5.32e-14 68.2
Msa0900090 MtrunA17_Chr4g0046221 75.676 37 9 0 142 178 10 46 1.53e-13 63.2
Msa0900090 MtrunA17_Chr1g0185591 27.684 177 118 4 5 180 11 178 3.53e-12 64.7
Msa0900090 MtrunA17_Chr7g0259771 26.738 187 103 3 7 180 9 174 7.10e-12 63.9
Msa0900090 MtrunA17_Chr1g0191811 27.011 174 119 3 7 180 17 182 5.68e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0900090 AT4G28950.1 91.429 210 15 2 1 209 1 208 2.40e-142 395
Msa0900090 AT3G48040.1 77.451 204 45 1 2 205 4 206 2.51e-114 325
Msa0900090 AT5G62880.1 82.682 179 31 0 2 180 4 182 1.05e-111 318
Msa0900090 AT4G35020.1 79.558 181 37 0 1 181 1 181 1.41e-109 312
Msa0900090 AT4G35020.2 79.558 181 37 0 1 181 1 181 1.41e-109 312
Msa0900090 AT4G35020.3 79.558 181 37 0 1 181 1 181 1.41e-109 312
Msa0900090 AT3G51300.1 80.337 178 35 0 1 178 1 178 1.16e-107 307
Msa0900090 AT1G75840.1 80.337 178 35 0 1 178 1 178 1.69e-106 304
Msa0900090 AT5G45970.1 78.212 179 39 0 1 179 1 179 2.08e-106 304
Msa0900090 AT1G20090.1 80.114 176 35 0 3 178 2 177 8.36e-106 303
Msa0900090 AT2G17800.2 79.213 178 37 0 1 178 1 178 1.29e-105 302
Msa0900090 AT2G17800.1 79.213 178 37 0 1 178 1 178 1.29e-105 302
Msa0900090 AT4G35950.1 78.090 178 39 0 1 178 1 178 2.37e-104 299
Msa0900090 AT5G62880.2 82.036 167 30 0 2 168 4 170 1.02e-102 295
Msa0900090 AT3G48040.2 83.436 163 27 0 2 164 4 166 2.59e-102 293
Msa0900090 AT2G44690.1 70.256 195 54 1 6 200 18 208 8.40e-99 285
Msa0900090 AT3G51290.2 79.310 145 30 0 34 178 635 779 6.09e-79 251
Msa0900090 AT4G35020.4 83.333 120 20 0 1 120 1 120 9.17e-74 220
Msa0900090 AT4G35020.5 83.333 120 20 0 1 120 1 120 9.17e-74 220
Msa0900090 AT4G35860.1 33.889 180 104 6 1 177 1 168 1.22e-26 102
Msa0900090 AT3G54840.1 33.898 177 102 6 7 180 34 198 2.64e-24 95.5
Msa0900090 AT4G17170.1 32.558 172 102 5 1 170 1 160 2.65e-24 95.9
Msa0900090 AT3G54840.2 34.524 168 95 6 7 171 34 189 3.93e-24 94.7
Msa0900090 AT3G54840.3 33.714 175 101 6 9 180 2 164 1.41e-23 92.8
Msa0900090 AT5G03530.2 30.097 206 116 8 8 197 15 208 1.76e-23 93.6
Msa0900090 AT5G03530.1 30.097 206 116 8 8 197 15 208 1.76e-23 93.6
Msa0900090 AT3G46060.2 31.737 167 101 5 6 170 15 170 2.00e-23 93.6
Msa0900090 AT3G46060.3 31.737 167 101 5 6 170 15 170 2.00e-23 93.6
Msa0900090 AT3G46060.1 31.737 167 101 5 6 170 15 170 2.00e-23 93.6
Msa0900090 AT5G45130.1 34.731 167 91 5 8 170 12 164 3.64e-23 92.4
Msa0900090 AT4G39890.1 35.542 166 92 5 8 170 11 164 3.89e-23 92.8
Msa0900090 AT5G59840.1 30.682 176 109 5 6 179 15 179 6.26e-23 92.4
Msa0900090 AT4G17160.1 30.814 172 105 5 1 170 1 160 1.17e-22 91.3
Msa0900090 AT1G73640.1 35.928 167 93 5 6 170 13 167 2.38e-22 91.3
Msa0900090 AT3G53610.2 30.114 176 110 5 6 179 15 179 2.54e-22 90.9
Msa0900090 AT3G53610.3 30.114 176 110 5 6 179 15 179 2.54e-22 90.9
Msa0900090 AT3G53610.1 30.114 176 110 5 6 179 15 179 2.54e-22 90.9
Msa0900090 AT1G02130.1 32.335 167 99 5 6 170 8 162 2.56e-22 90.5
Msa0900090 AT5G45130.2 34.545 165 90 5 10 170 22 172 3.34e-22 90.1
Msa0900090 AT1G22740.1 30.392 204 122 6 6 198 8 202 4.24e-22 89.7
Msa0900090 AT1G43890.3 29.050 179 112 5 6 181 13 179 4.30e-22 90.1
Msa0900090 AT1G43890.1 29.050 179 112 5 6 181 13 179 4.30e-22 90.1
Msa0900090 AT1G43890.2 29.050 179 112 5 6 181 13 179 4.30e-22 90.1
Msa0900090 AT3G18820.1 30.583 206 120 6 6 197 8 204 6.21e-22 89.4
Msa0900090 AT4G19640.1 33.533 167 93 5 8 170 12 164 1.00e-21 88.6
Msa0900090 AT4G17530.1 29.902 204 119 8 6 197 8 199 1.65e-21 88.2
Msa0900090 AT1G16920.1 38.843 121 71 3 6 124 13 132 2.43e-21 88.2
Msa0900090 AT5G47200.1 29.902 204 119 8 6 197 8 199 2.51e-21 87.8
Msa0900090 AT1G07410.1 31.551 187 114 6 6 190 12 186 2.73e-21 87.8
Msa0900090 AT1G18200.1 33.333 171 100 5 6 174 13 171 5.66e-21 87.4
Msa0900090 AT3G11730.1 30.178 169 104 5 6 172 8 164 7.59e-21 86.7
Msa0900090 AT5G59150.1 33.149 181 107 6 6 184 12 180 1.15e-20 86.3
Msa0900090 AT3G16100.1 31.401 207 119 7 6 198 8 205 1.26e-20 85.9
Msa0900090 AT2G22290.1 35.152 165 93 5 8 170 11 163 3.59e-20 84.7
Msa0900090 AT5G45750.1 28.638 213 129 6 6 207 13 213 5.29e-20 84.7
Msa0900090 AT5G64990.1 34.545 165 94 5 8 170 9 161 5.81e-20 84.3
Msa0900090 AT3G09900.1 31.818 176 107 5 6 179 15 179 6.31e-20 84.3
Msa0900090 AT4G18430.1 39.516 124 72 3 6 127 13 135 6.58e-20 84.3
Msa0900090 AT1G52280.1 30.097 206 121 7 6 197 8 204 6.73e-20 84.0
Msa0900090 AT5G03520.1 32.386 176 106 5 6 179 15 179 8.56e-20 84.0
Msa0900090 AT3G46830.1 29.834 181 113 5 6 184 12 180 9.59e-20 84.0
Msa0900090 AT3G46830.2 29.834 181 113 5 6 184 12 180 9.59e-20 84.0
Msa0900090 AT1G09630.1 31.522 184 112 5 6 187 12 183 1.19e-19 83.6
Msa0900090 AT3G15060.1 38.525 122 72 3 8 127 15 135 1.27e-19 83.6
Msa0900090 AT5G60860.1 29.891 184 115 4 6 187 13 184 1.57e-19 83.2
Msa0900090 AT2G44610.1 33.939 165 95 4 8 170 11 163 2.02e-19 82.8
Msa0900090 AT4G18800.1 29.348 184 116 5 6 187 13 184 2.60e-19 82.8
Msa0900090 AT5G65270.1 28.723 188 120 5 8 193 19 194 3.39e-19 82.8
Msa0900090 AT1G06400.1 36.364 121 74 3 6 124 13 132 3.65e-19 82.4
Msa0900090 AT4G19640.3 34.483 145 87 5 8 147 12 153 5.11e-19 81.3
Msa0900090 AT2G21880.1 30.270 185 114 5 6 184 9 184 6.26e-19 81.6
Msa0900090 AT5G10260.1 33.333 165 96 5 8 170 11 163 8.10e-19 81.3
Msa0900090 AT5G47520.1 28.000 200 130 5 2 199 10 197 8.14e-19 81.6
Msa0900090 AT4G19640.2 35.938 128 75 4 8 131 12 136 8.21e-19 79.7
Msa0900090 AT3G12160.1 38.462 117 69 3 8 122 17 132 1.31e-18 80.9
Msa0900090 AT1G28550.1 37.903 124 74 3 6 127 13 135 1.39e-18 80.9
Msa0900090 AT1G49300.2 29.126 206 123 6 6 197 8 204 1.53e-18 80.5
Msa0900090 AT1G49300.1 29.126 206 123 6 6 197 8 204 1.53e-18 80.5
Msa0900090 AT2G31680.1 30.055 183 114 5 6 186 12 182 1.73e-18 80.5
Msa0900090 AT4G39990.1 27.624 181 117 5 8 186 19 187 1.76e-18 80.9
Msa0900090 AT2G43130.1 29.508 183 115 5 6 186 12 182 2.54e-18 80.1
Msa0900090 AT2G33870.1 37.903 124 74 3 6 127 13 135 3.27e-18 79.7
Msa0900090 AT4G35860.2 34.586 133 73 5 47 177 2 122 4.36e-18 78.2
Msa0900090 AT4G09720.1 28.342 187 119 5 6 186 8 185 4.48e-18 79.3
Msa0900090 AT1G05810.1 29.508 183 115 5 6 186 12 182 5.72e-18 79.3
Msa0900090 AT4G09720.4 27.604 192 119 4 6 186 8 190 5.94e-18 79.0
Msa0900090 AT1G05810.2 29.508 183 115 5 6 186 58 228 8.27e-18 79.7
Msa0900090 AT5G64990.2 33.140 172 94 6 8 170 9 168 2.43e-17 77.4
Msa0900090 AT5G47960.1 35.897 117 72 3 8 122 17 132 3.78e-17 77.0
Msa0900090 AT4G09720.3 26.768 198 119 4 6 186 8 196 4.41e-17 76.6
Msa0900090 AT1G01200.1 37.607 117 70 3 8 122 30 145 6.75e-17 76.6
Msa0900090 AT3G07410.1 29.282 181 114 5 6 184 12 180 2.12e-16 75.1
Msa0900090 AT5G55080.1 30.909 165 99 5 7 170 14 164 3.52e-16 74.3
Msa0900090 AT5G27540.1 25.843 178 124 3 3 180 14 183 1.30e-15 75.1
Msa0900090 AT5G27540.2 25.843 178 124 3 3 180 14 183 1.30e-15 75.1
Msa0900090 AT3G09910.3 28.571 182 114 6 8 185 15 184 5.44e-15 70.9
Msa0900090 AT3G09910.1 28.571 182 114 6 8 185 15 184 5.44e-15 70.9
Msa0900090 AT3G09910.2 28.571 182 114 6 8 185 15 184 5.44e-15 70.9
Msa0900090 AT5G03520.2 32.090 134 79 4 47 179 47 169 2.08e-14 69.3
Msa0900090 AT3G09910.5 29.480 173 106 6 8 176 15 175 2.68e-14 68.9
Msa0900090 AT3G09910.4 29.480 173 106 6 8 176 15 175 2.68e-14 68.9
Msa0900090 AT5G59150.2 33.094 139 80 5 47 184 3 129 3.76e-14 67.8
Msa0900090 AT5G20020.1 33.051 118 77 2 7 123 14 130 4.24e-14 68.9
Msa0900090 AT5G55190.1 33.051 118 77 2 7 123 14 130 5.41e-14 68.6
Msa0900090 AT5G20010.1 33.051 118 77 2 7 123 14 130 6.43e-14 68.2
Msa0900090 AT3G63150.1 28.571 175 115 5 7 180 15 180 2.27e-13 68.6
Msa0900090 AT2G21880.4 29.697 165 101 5 26 184 4 159 3.51e-13 65.9
Msa0900090 AT2G21880.3 29.697 165 101 5 26 184 4 159 3.51e-13 65.9

Find 63 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGAAGAAAAGGGTGTTTC+TGG 0.145694 6_1:+95484157 None:intergenic
AAAAGGGTGTTTCTGGATTT+TGG 0.159935 6_1:+95484164 None:intergenic
GGATGGAAGCATTGTGAATT+TGG 0.222822 6_1:-95483268 Msa0900090:CDS
CTTGGCATTTCTTTCCTCCT+TGG 0.280179 6_1:+95481198 None:intergenic
GCATTGTGAATTTGGGACTA+TGG 0.282030 6_1:-95483260 Msa0900090:CDS
ATTGTACCATCTCTTTCTTT+TGG 0.301041 6_1:-95480465 Msa0900090:intron
ACAAGAACAATTGGTACATT+AGG 0.302101 6_1:+95481794 None:intergenic
TTAACTGTTAGCTAAGACTA+AGG 0.315400 6_1:+95484047 None:intergenic
AGAAGAAGTAAATGAAGAAA+AGG 0.331089 6_1:+95484147 None:intergenic
CAAGAACAATTGGTACATTA+GGG 0.336893 6_1:+95481795 None:intergenic
TACAGTGGGAAATTTGTTAC+TGG 0.346209 6_1:+95483944 None:intergenic
GGGGCGAATCTACGCAATTC+TGG 0.349508 6_1:+95481815 None:intergenic
AATGTACCAATTGTTCTTGT+TGG 0.351740 6_1:-95481791 Msa0900090:CDS
AGGTTGGAGAACAACCTTAA+TGG 0.368247 6_1:+95481221 None:intergenic
TCAACCTGCTATAATCTTCT+TGG 0.373752 6_1:+95483096 None:intergenic
AATTCCCTTCAGAATCCAAT+AGG 0.375234 6_1:+95480294 None:intergenic
GGCATTTCTTTCCTCCTTGG+AGG 0.381404 6_1:+95481201 None:intergenic
CAGTTAACAAAAGACCCTAT+TGG 0.382158 6_1:-95480309 Msa0900090:three_prime_UTR
TTTGTGCCAACAAGAACAAT+TGG 0.431169 6_1:+95481785 None:intergenic
GAAGAAGTAAATGAAGAAAA+GGG 0.433995 6_1:+95484148 None:intergenic
TTTCTTTCCTCCTTGGAGGT+TGG 0.434085 6_1:+95481205 None:intergenic
GTTCTTGTTGGCACAAAGTT+GGG 0.434417 6_1:-95481779 Msa0900090:intron
TGTTCTTGTTGGCACAAAGT+TGG 0.446553 6_1:-95481780 Msa0900090:CDS
CACTTACACAAACGAGCAAC+CGG 0.448127 6_1:+95481155 None:intergenic
CTATGAAAATGTTCTTAAGA+AGG 0.449203 6_1:-95483009 Msa0900090:intron
TTGAGGCCACTGAGCTATAG+AGG 0.451519 6_1:-95483077 Msa0900090:CDS
GAAGAACTGAGGAAACAAAT+TGG 0.458019 6_1:-95481431 Msa0900090:CDS
AAGAAATGCCAAGGAAGAAA+AGG 0.469586 6_1:-95481188 Msa0900090:CDS
GATGGAAGCATTGTGAATTT+GGG 0.471347 6_1:-95483267 Msa0900090:CDS
CATTGTGAATTTGGGACTAT+GGG 0.489001 6_1:-95483259 Msa0900090:CDS
ATGCAGCTCGAAGACTCAAC+AGG 0.495930 6_1:-95481390 Msa0900090:intron
TGGATATTTCGCTGATCACA+CGG 0.507522 6_1:-95481637 Msa0900090:CDS
CAGGCCAAGAAGATTATAGC+AGG 0.520528 6_1:-95483100 Msa0900090:CDS
ATTCCCTTCAGAATCCAATA+GGG 0.521896 6_1:+95480295 None:intergenic
CAAGGAAGAAAAGGCAAAGA+AGG 0.532454 6_1:-95481179 Msa0900090:CDS
AAGACCCTATTGGATTCTGA+AGG 0.535512 6_1:-95480299 Msa0900090:three_prime_UTR
ACTGTTGGTGATGGTGCTGT+TGG 0.537659 6_1:-95483993 Msa0900090:CDS
AAGAAAAGGCAAAGAAGGTC+CGG 0.538145 6_1:-95481174 Msa0900090:CDS
CTAATTAATAATACAAAACA+TGG 0.541882 6_1:+95480247 None:intergenic
TTCATTAAATGTGTCACTGT+TGG 0.541909 6_1:-95484008 Msa0900090:CDS
ACATCTGATTAGTGATTACA+TGG 0.543261 6_1:-95480395 Msa0900090:three_prime_UTR
TACTGCAGGGGTATTGTGTG+TGG 0.556494 6_1:-95480515 Msa0900090:intron
CTAAAATTATCAAATACTGT+TGG 0.567683 6_1:+95483306 None:intergenic
AGTGCAAATGTAGCTGTGGA+TGG 0.578876 6_1:-95483285 Msa0900090:CDS
GAGGCAATGAAGCATTTGAA+GGG 0.586360 6_1:+95480192 None:intergenic
AAGAAGATTATAGCAGGTTG+AGG 0.589934 6_1:-95483094 Msa0900090:CDS
AAATGTGTCACTGTTGGTGA+TGG 0.594720 6_1:-95484002 Msa0900090:CDS
TGCAGGGGTATTGTGTGTGG+AGG 0.599349 6_1:-95480512 Msa0900090:intron
AGGTTGTTCTCCAACCTCCA+AGG 0.601575 6_1:-95481215 Msa0900090:CDS
CAAGGAGGAAAGAAATGCCA+AGG 0.611296 6_1:-95481197 Msa0900090:CDS
TTGGGACTATGGGACACTGC+AGG 0.615110 6_1:-95483249 Msa0900090:intron
AGACCCTATTGGATTCTGAA+GGG 0.616770 6_1:-95480298 Msa0900090:three_prime_UTR
GGATATTTCGCTGATCACAC+GGG 0.622383 6_1:-95481636 Msa0900090:CDS
TAATGTTATAACATCTGCTG+AGG 0.624985 6_1:-95481610 Msa0900090:intron
TTAGATCTTCGTGAAGATCG+TGG 0.626265 6_1:-95481657 Msa0900090:intron
TAAAGCTTCAAGATCAAATG+TGG 0.628585 6_1:-95480425 Msa0900090:intron
TCACACTCTTTAAACCTCAG+AGG 0.640471 6_1:-95484121 Msa0900090:five_prime_UTR
TCCAAACCAAAAGAAAGAGA+TGG 0.642190 6_1:+95480459 None:intergenic
CTTTGTAGGGAGAAGAACTG+AGG 0.678121 6_1:-95481442 Msa0900090:intron
GTAGAAAGAAACAACCTCTG+AGG 0.685013 6_1:+95484107 None:intergenic
TCTGCTCCTCTATAGCTCAG+TGG 0.686899 6_1:+95483071 None:intergenic
AAGAACAATTGGTACATTAG+GGG 0.696220 6_1:+95481796 None:intergenic
TTGTTCTCCAACCTCCAAGG+AGG 0.708915 6_1:-95481212 Msa0900090:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTAATTTT+TGG - chr6_1:95481075-95481094 Msa0900090:intron 0.0%
!!! TTTTTTTTTTTTTAATTTTT+GGG - chr6_1:95481076-95481095 Msa0900090:intron 0.0%
!! TAGGAAATTTATATAATATA+TGG + chr6_1:95480522-95480541 None:intergenic 10.0%
!! AAGATCAAAAATTAAAAAAT+GGG + chr6_1:95480556-95480575 None:intergenic 10.0%
!! AAAGATCAAAAATTAAAAAA+TGG + chr6_1:95480557-95480576 None:intergenic 10.0%
!!! AAAATTTATTGATTAGAAAA+AGG - chr6_1:95481238-95481257 Msa0900090:CDS 10.0%
!! TAATTATCAAATAAATTGAT+AGG - chr6_1:95482029-95482048 Msa0900090:intron 10.0%
!! AATTATCAAATAAATTGATA+GGG - chr6_1:95482030-95482049 Msa0900090:intron 10.0%
!! AGATCAAAAATTAAAAAATG+GGG + chr6_1:95480555-95480574 None:intergenic 15.0%
!!! ACATTTTTTATAAGCTTTTT+CGG - chr6_1:95480687-95480706 Msa0900090:intron 15.0%
!!! ATTTTCTTTTTGTTGAAAAA+AGG + chr6_1:95481223-95481242 None:intergenic 15.0%
!! TATTTATTATGGTTTCAAAT+AGG + chr6_1:95482007-95482026 None:intergenic 15.0%
!! AATGTAATCTTAAACATAAA+TGG - chr6_1:95482193-95482212 Msa0900090:intron 15.0%
!! ATGTAATCTTAAACATAAAT+GGG - chr6_1:95482194-95482213 Msa0900090:intron 15.0%
!! ATGATTCAATTTCAAATTAT+AGG + chr6_1:95483303-95483322 None:intergenic 15.0%
!!! CTAATTCAAAATTAATTTGA+AGG - chr6_1:95483383-95483402 Msa0900090:intron 15.0%
!! TGATTAGTATATATAGTTTA+CGG - chr6_1:95483407-95483426 Msa0900090:intron 15.0%
!!! CATTTTCTTTAAATTAGTTA+TGG + chr6_1:95483604-95483623 None:intergenic 15.0%
!! CTAATTAATAATACAAAACA+TGG + chr6_1:95484176-95484195 None:intergenic 15.0%
!! AAAAGAAGAAATATTACAGT+GGG + chr6_1:95480493-95480512 None:intergenic 20.0%
!! AAAAAGAAGAAATATTACAG+TGG + chr6_1:95480494-95480513 None:intergenic 20.0%
!! TGATCACTTATACTAATATA+GGG - chr6_1:95480903-95480922 Msa0900090:intron 20.0%
!!! TATGATTTTTGATTTGTGTA+AGG - chr6_1:95480976-95480995 Msa0900090:intron 20.0%
!! TCTAAATATGTTAATGTTAC+TGG - chr6_1:95481047-95481066 Msa0900090:intron 20.0%
!! CTAAAATTATCAAATACTGT+TGG + chr6_1:95481117-95481136 None:intergenic 20.0%
!! GATTAGAAAAAGGAAAAAAA+AGG - chr6_1:95481248-95481267 Msa0900090:CDS 20.0%
!!! TTTTTTTTTTCAATGTTTGC+AGG - chr6_1:95481301-95481320 Msa0900090:intron 20.0%
!!! ACAAAAAGAAAAAGTATCAT+AGG + chr6_1:95481461-95481480 None:intergenic 20.0%
!!! TTTTCTCTTGTTTCTATTTT+TGG - chr6_1:95481489-95481508 Msa0900090:intron 20.0%
!! CTCATAACTTTATATGAAAA+CGG - chr6_1:95481673-95481692 Msa0900090:intron 20.0%
!! CATAAACACTTATATGATAA+TGG - chr6_1:95481736-95481755 Msa0900090:intron 20.0%
!! TGTAATCTTAAACATAAATG+GGG - chr6_1:95482195-95482214 Msa0900090:intron 20.0%
!! CAAACTTTACCTTTATAAAT+AGG - chr6_1:95482237-95482256 Msa0900090:intron 20.0%
!!! TAAATTTGACAACACATTTT+TGG - chr6_1:95482265-95482284 Msa0900090:intron 20.0%
!!! TTTTTTGTTTTTTCTTTCAG+TGG - chr6_1:95482579-95482598 Msa0900090:intron 20.0%
!!! ATTTTGTACTTTTATTGTTC+TGG - chr6_1:95482684-95482703 Msa0900090:intron 20.0%
!! CTAATAAATCAAATAAGCTA+TGG + chr6_1:95482908-95482927 None:intergenic 20.0%
!! TTAAACAAGTTAATCTTTGT+AGG - chr6_1:95482964-95482983 Msa0900090:intron 20.0%
!! TAAACAAGTTAATCTTTGTA+GGG - chr6_1:95482965-95482984 Msa0900090:intron 20.0%
!! TATTAAAATCCAATTATGTC+AGG - chr6_1:95483071-95483090 Msa0900090:CDS 20.0%
!! TGCTATTATTAACGTATATT+AGG - chr6_1:95483676-95483695 Msa0900090:intron 20.0%
! GAAGAAGTAAATGAAGAAAA+GGG + chr6_1:95480275-95480294 None:intergenic 25.0%
! AGAAGAAGTAAATGAAGAAA+AGG + chr6_1:95480276-95480295 None:intergenic 25.0%
!!! AAAATGGGGAAACTTTTTTT+AGG + chr6_1:95480541-95480560 None:intergenic 25.0%
! TTTCATAAGTTCTTCAAGAT+AGG - chr6_1:95480715-95480734 Msa0900090:intron 25.0%
! CTGATCACTTATACTAATAT+AGG - chr6_1:95480902-95480921 Msa0900090:intron 25.0%
! AATTAAGCACATGATAACAT+TGG + chr6_1:95480941-95480960 None:intergenic 25.0%
!!! TTTTTTAATTTTTGGGTTGC+AGG - chr6_1:95481083-95481102 Msa0900090:intron 25.0%
!!! AGGTACTTAAAACTTTGTTT+TGG - chr6_1:95481191-95481210 Msa0900090:CDS 25.0%
! CTATGAAAATGTTCTTAAGA+AGG - chr6_1:95481411-95481430 Msa0900090:CDS 25.0%
!!! AAAAGAAAAAGTATCATAGG+AGG + chr6_1:95481458-95481477 None:intergenic 25.0%
!!! TTTGCATGTTGATGATAAAT+GGG - chr6_1:95481809-95481828 Msa0900090:CDS 25.0%
!!! TCAAGTTGAAAATGAATCTT+TGG - chr6_1:95482086-95482105 Msa0900090:intron 25.0%
! TTTAGTGCACCTATTTATAA+AGG + chr6_1:95482249-95482268 None:intergenic 25.0%
!!! TAATGTTCTTAGCTTTAGAT+TGG - chr6_1:95482541-95482560 Msa0900090:intron 25.0%
! TTCTACTCTTATTAGGTTAA+AGG + chr6_1:95482711-95482730 None:intergenic 25.0%
! GTTATAACAGTATAAAACGA+TGG + chr6_1:95482863-95482882 None:intergenic 25.0%
! AAATCAAATAAGCTATGGAA+CGG + chr6_1:95482903-95482922 None:intergenic 25.0%
! TGAATCATACTTCTAATCAT+TGG - chr6_1:95483315-95483334 Msa0900090:CDS 25.0%
!!! ACGGAGATTTTTTAATAGTA+AGG - chr6_1:95483426-95483445 Msa0900090:intron 25.0%
! AGTAAGGAAATTAGATTGTT+AGG - chr6_1:95483442-95483461 Msa0900090:intron 25.0%
! TAGATTCACAAAAATCAGTT+CGG + chr6_1:95483644-95483663 None:intergenic 25.0%
! ATACGTTAATAATAGCAAAG+AGG + chr6_1:95483673-95483692 None:intergenic 25.0%
!! TTTTTAACAGTCCTGATATT+CGG + chr6_1:95483720-95483739 None:intergenic 25.0%
TTAACTGTTAGCTAAGACTA+AGG + chr6_1:95480376-95480395 None:intergenic 30.0%
! TTCATTAAATGTGTCACTGT+TGG - chr6_1:95480412-95480431 Msa0900090:three_prime_UTR 30.0%
ACTATATACTATGAGCTAGT+TGG - chr6_1:95480605-95480624 Msa0900090:intron 30.0%
!! ATAAGTTTTGTGAGACTGTT+TGG - chr6_1:95480660-95480679 Msa0900090:intron 30.0%
AATAAGCTGTTTATCCAAAC+AGG - chr6_1:95480841-95480860 Msa0900090:intron 30.0%
ATAAGCTGTTTATCCAAACA+GGG - chr6_1:95480842-95480861 Msa0900090:intron 30.0%
TTGTGTAAGGATTCTAATTC+TGG - chr6_1:95480989-95481008 Msa0900090:intron 30.0%
ACATGAAGAAATCCAAACAA+GGG + chr6_1:95481543-95481562 None:intergenic 30.0%
AACATGAAGAAATCCAAACA+AGG + chr6_1:95481544-95481563 None:intergenic 30.0%
!! GTTTGCATGTTGATGATAAA+TGG - chr6_1:95481808-95481827 Msa0900090:CDS 30.0%
GTTGAAAATGAATCTTTGGT+TGG - chr6_1:95482090-95482109 Msa0900090:intron 30.0%
TGGTGAGAATGATCTATTAT+CGG + chr6_1:95482447-95482466 None:intergenic 30.0%
AAGAACAATTGGTACATTAG+GGG + chr6_1:95482627-95482646 None:intergenic 30.0%
CAAGAACAATTGGTACATTA+GGG + chr6_1:95482628-95482647 None:intergenic 30.0%
ACAAGAACAATTGGTACATT+AGG + chr6_1:95482629-95482648 None:intergenic 30.0%
AATGTACCAATTGTTCTTGT+TGG - chr6_1:95482629-95482648 Msa0900090:intron 30.0%
TAGTCTCTTCTACTCTTATT+AGG + chr6_1:95482718-95482737 None:intergenic 30.0%
TAATGTTATAACATCTGCTG+AGG - chr6_1:95482810-95482829 Msa0900090:intron 30.0%
! GCTTATTTGATTTATTAGCG+AGG - chr6_1:95482910-95482929 Msa0900090:intron 30.0%
CATAAAAGACCTGACATAAT+TGG + chr6_1:95483083-95483102 None:intergenic 30.0%
! AGGTCTTTTATGATGTATGT+TGG - chr6_1:95483091-95483110 Msa0900090:CDS 30.0%
TTTCTCTTTGCAGAATCTTA+TGG - chr6_1:95483114-95483133 Msa0900090:intron 30.0%
!! TGTTTTTGATACTGCCATTA+AGG - chr6_1:95483185-95483204 Msa0900090:intron 30.0%
AAATTAGATTGTTAGGCAAG+TGG - chr6_1:95483449-95483468 Msa0900090:intron 30.0%
TCGATTCAAAAACACAGAAT+CGG + chr6_1:95483580-95483599 None:intergenic 30.0%
AAAAAAACGAACCGAATATC+AGG - chr6_1:95483706-95483725 Msa0900090:intron 30.0%
! TTCAAATTGGTTTAGCAGTT+TGG + chr6_1:95483744-95483763 None:intergenic 30.0%
!!! TCTATCTTCTTTTTTACTGC+AGG - chr6_1:95483891-95483910 Msa0900090:intron 30.0%
!!! CTATCTTCTTTTTTACTGCA+GGG - chr6_1:95483892-95483911 Msa0900090:intron 30.0%
!!! TATCTTCTTTTTTACTGCAG+GGG - chr6_1:95483893-95483912 Msa0900090:intron 30.0%
! ATTGTACCATCTCTTTCTTT+TGG - chr6_1:95483955-95483974 Msa0900090:CDS 30.0%
TAAAGCTTCAAGATCAAATG+TGG - chr6_1:95483995-95484014 Msa0900090:CDS 30.0%
ACATCTGATTAGTGATTACA+TGG - chr6_1:95484025-95484044 Msa0900090:CDS 30.0%
!!! AAAAGGGTGTTTCTGGATTT+TGG + chr6_1:95480259-95480278 None:intergenic 35.0%
!! AATGAAGAAAAGGGTGTTTC+TGG + chr6_1:95480266-95480285 None:intergenic 35.0%
!! TACAGTGGGAAATTTGTTAC+TGG + chr6_1:95480479-95480498 None:intergenic 35.0%
TTGTTCATATAGACCCTGTT+TGG + chr6_1:95480858-95480877 None:intergenic 35.0%
! TTTTAGTGCAAATGTAGCTG+TGG - chr6_1:95481131-95481150 Msa0900090:intron 35.0%
!! GATGGAAGCATTGTGAATTT+GGG - chr6_1:95481153-95481172 Msa0900090:intron 35.0%
! CATTGTGAATTTGGGACTAT+GGG - chr6_1:95481161-95481180 Msa0900090:intron 35.0%
TCAACCTGCTATAATCTTCT+TGG + chr6_1:95481327-95481346 None:intergenic 35.0%
AAGAAGATTATAGCAGGTTG+AGG - chr6_1:95481326-95481345 Msa0900090:intron 35.0%
TAGGAGGAAGCAAAGAAATA+GGG + chr6_1:95481442-95481461 None:intergenic 35.0%
ATAGGAGGAAGCAAAGAAAT+AGG + chr6_1:95481443-95481462 None:intergenic 35.0%
! AGTTAGATTTTGCCCTTGTT+TGG - chr6_1:95481528-95481547 Msa0900090:intron 35.0%
CTTATTTCCATAAGCTTGTC+AGG - chr6_1:95481633-95481652 Msa0900090:CDS 35.0%
TATCATCAACATGCAAACAC+AGG + chr6_1:95481806-95481825 None:intergenic 35.0%
! TTGATGATAAATGGGAGGAA+AGG - chr6_1:95481817-95481836 Msa0900090:CDS 35.0%
AGATAGAAGTCAACAAGCTA+TGG + chr6_1:95482125-95482144 None:intergenic 35.0%
ATCATCAAGTAGCTATCACT+AGG + chr6_1:95482152-95482171 None:intergenic 35.0%
! AGTGATAGCTACTTGATGAT+AGG - chr6_1:95482152-95482171 Msa0900090:intron 35.0%
! GTGATAGCTACTTGATGATA+GGG - chr6_1:95482153-95482172 Msa0900090:intron 35.0%
CATAACATAGAGATCTACCT+CGG - chr6_1:95482465-95482484 Msa0900090:intron 35.0%
TTTGTGCCAACAAGAACAAT+TGG + chr6_1:95482638-95482657 None:intergenic 35.0%
TTATAACATCTGCTGAGGTA+TGG - chr6_1:95482815-95482834 Msa0900090:intron 35.0%
GAAGAACTGAGGAAACAAAT+TGG - chr6_1:95482989-95483008 Msa0900090:intron 35.0%
AAGAAATGCCAAGGAAGAAA+AGG - chr6_1:95483232-95483251 Msa0900090:intron 35.0%
!! TCATTGGTCTTTGCATTTGA+TGG - chr6_1:95483331-95483350 Msa0900090:intron 35.0%
ACAAACCATTAACACGAGTT+TGG + chr6_1:95483525-95483544 None:intergenic 35.0%
ATCGAGCGTTTATATCAGTT+TGG + chr6_1:95483554-95483573 None:intergenic 35.0%
TGAAAAGAACTGAACTGTGA+TGG - chr6_1:95483770-95483789 Msa0900090:intron 35.0%
!! ACCATCTCTTTCTTTTGGTT+TGG - chr6_1:95483960-95483979 Msa0900090:CDS 35.0%
TCCAAACCAAAAGAAAGAGA+TGG + chr6_1:95483964-95483983 None:intergenic 35.0%
CAGTTAACAAAAGACCCTAT+TGG - chr6_1:95484111-95484130 Msa0900090:five_prime_UTR 35.0%
ATTCCCTTCAGAATCCAATA+GGG + chr6_1:95484128-95484147 None:intergenic 35.0%
AATTCCCTTCAGAATCCAAT+AGG + chr6_1:95484129-95484148 None:intergenic 35.0%
TCACACTCTTTAAACCTCAG+AGG - chr6_1:95480299-95480318 Msa0900090:three_prime_UTR 40.0%
GTAGAAAGAAACAACCTCTG+AGG + chr6_1:95480316-95480335 None:intergenic 40.0%
! AAATGTGTCACTGTTGGTGA+TGG - chr6_1:95480418-95480437 Msa0900090:three_prime_UTR 40.0%
! GTTTTGTGAGACTGTTTGGA+AGG - chr6_1:95480664-95480683 Msa0900090:intron 40.0%
!! GGATGGAAGCATTGTGAATT+TGG - chr6_1:95481152-95481171 Msa0900090:intron 40.0%
! GCATTGTGAATTTGGGACTA+TGG - chr6_1:95481160-95481179 Msa0900090:intron 40.0%
TTCACTTGTGAGACTGTTTG+AGG - chr6_1:95481565-95481584 Msa0900090:intron 40.0%
TCACTTGTGAGACTGTTTGA+GGG - chr6_1:95481566-95481585 Msa0900090:intron 40.0%
AAGCTTTCCTGACAAGCTTA+TGG + chr6_1:95481643-95481662 None:intergenic 40.0%
!! GCATGTTGATGATAAATGGG+AGG - chr6_1:95481812-95481831 Msa0900090:CDS 40.0%
TAGAAGTCAACAAGCTATGG+TGG + chr6_1:95482122-95482141 None:intergenic 40.0%
CGAGGTAGATCTCTATGTTA+TGG + chr6_1:95482467-95482486 None:intergenic 40.0%
TGTTCTTGTTGGCACAAAGT+TGG - chr6_1:95482640-95482659 Msa0900090:intron 40.0%
GTTCTTGTTGGCACAAAGTT+GGG - chr6_1:95482641-95482660 Msa0900090:intron 40.0%
TTAGATCTTCGTGAAGATCG+TGG - chr6_1:95482763-95482782 Msa0900090:intron 40.0%
TGGATATTTCGCTGATCACA+CGG - chr6_1:95482783-95482802 Msa0900090:intron 40.0%
AGGTTGGAGAACAACCTTAA+TGG + chr6_1:95483202-95483221 None:intergenic 40.0%
! CTTCTTTGCCTTTTCTTCCT+TGG + chr6_1:95483243-95483262 None:intergenic 40.0%
CAAGGAAGAAAAGGCAAAGA+AGG - chr6_1:95483241-95483260 Msa0900090:intron 40.0%
AAGAAAAGGCAAAGAAGGTC+CGG - chr6_1:95483246-95483265 Msa0900090:intron 40.0%
TTAGGCAAGTGGTTCAATTC+AGG - chr6_1:95483460-95483479 Msa0900090:intron 40.0%
GTTTCGTCAAACTGTTGTTG+TGG + chr6_1:95483499-95483518 None:intergenic 40.0%
ACTGACCAAACTCGTGTTAA+TGG - chr6_1:95483517-95483536 Msa0900090:intron 40.0%
! ACTCGTGTTAATGGTTTGTC+TGG - chr6_1:95483526-95483545 Msa0900090:intron 40.0%
! CTTTTCAGTGCGGTTCAAAT+TGG + chr6_1:95483757-95483776 None:intergenic 40.0%
! CAGTTCAGTTCTTTTCAGTG+CGG + chr6_1:95483767-95483786 None:intergenic 40.0%
AAGACCCTATTGGATTCTGA+AGG - chr6_1:95484121-95484140 Msa0900090:five_prime_UTR 40.0%
AGACCCTATTGGATTCTGAA+GGG - chr6_1:95484122-95484141 Msa0900090:five_prime_UTR 40.0%
GGGAAAAATAACGGTTCTCT+TGG + chr6_1:95484211-95484230 None:intergenic 40.0%
AGTGCAAATGTAGCTGTGGA+TGG - chr6_1:95481135-95481154 Msa0900090:intron 45.0%
CAGGCCAAGAAGATTATAGC+AGG - chr6_1:95481320-95481339 Msa0900090:intron 45.0%
AACATGCAAACACAGGCTCA+TGG + chr6_1:95481799-95481818 None:intergenic 45.0%
GGATATTTCGCTGATCACAC+GGG - chr6_1:95482784-95482803 Msa0900090:intron 45.0%
CTTTGTAGGGAGAAGAACTG+AGG - chr6_1:95482978-95482997 Msa0900090:intron 45.0%
TTTCTTTCCTCCTTGGAGGT+TGG + chr6_1:95483218-95483237 None:intergenic 45.0%
CTTGGCATTTCTTTCCTCCT+TGG + chr6_1:95483225-95483244 None:intergenic 45.0%
CAAGGAGGAAAGAAATGCCA+AGG - chr6_1:95483223-95483242 Msa0900090:intron 45.0%
CACTTACACAAACGAGCAAC+CGG + chr6_1:95483268-95483287 None:intergenic 45.0%
GCAAGTGGTTCAATTCAGGA+AGG - chr6_1:95483464-95483483 Msa0900090:intron 45.0%
ACATCTCAGATTCACGTGAC+AGG + chr6_1:95483828-95483847 None:intergenic 45.0%
!! TGATAATTATTTATTTATTA+TGG + chr6_1:95482018-95482037 None:intergenic 5.0%
!! ATTAAAAAAATTACAAAAAT+AGG + chr6_1:95482368-95482387 None:intergenic 5.0%
!!! TGTAATTTTTTTAATAATTT+TGG - chr6_1:95482373-95482392 Msa0900090:intron 5.0%
!!! GTAATTTTTTTAATAATTTT+GGG - chr6_1:95482374-95482393 Msa0900090:intron 5.0%
!! ACTGTTGGTGATGGTGCTGT+TGG - chr6_1:95480427-95480446 Msa0900090:intron 50.0%
TTGAGGCCACTGAGCTATAG+AGG - chr6_1:95481343-95481362 Msa0900090:intron 50.0%
TCTGCTCCTCTATAGCTCAG+TGG + chr6_1:95481352-95481371 None:intergenic 50.0%
TGCAAACACAGGCTCATGGT+TGG + chr6_1:95481795-95481814 None:intergenic 50.0%
ATGCAGCTCGAAGACTCAAC+AGG - chr6_1:95483030-95483049 Msa0900090:CDS 50.0%
AGGTTGTTCTCCAACCTCCA+AGG - chr6_1:95483205-95483224 Msa0900090:intron 50.0%
TTGTTCTCCAACCTCCAAGG+AGG - chr6_1:95483208-95483227 Msa0900090:intron 50.0%
GGCATTTCTTTCCTCCTTGG+AGG + chr6_1:95483222-95483241 None:intergenic 50.0%
! AGGTAGCTTGCGAACTCAAC+TGG + chr6_1:95483808-95483827 None:intergenic 50.0%
!! TACTGCAGGGGTATTGTGTG+TGG - chr6_1:95483905-95483924 Msa0900090:intron 50.0%
TTGGGACTATGGGACACTGC+AGG - chr6_1:95481171-95481190 Msa0900090:CDS 55.0%
AGATCTACCTCGGCATTGCG+AGG - chr6_1:95482475-95482494 Msa0900090:intron 55.0%
GGGGCGAATCTACGCAATTC+TGG + chr6_1:95482608-95482627 None:intergenic 55.0%
!! TGCAGGGGTATTGTGTGTGG+AGG - chr6_1:95483908-95483927 Msa0900090:intron 55.0%
CAGAAAGCCTCGCAATGCCG+AGG + chr6_1:95482485-95482504 None:intergenic 60.0%
CTCGGCATTGCGAGGCTTTC+TGG - chr6_1:95482483-95482502 Msa0900090:intron 60.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 95480207 95484235 95480207 ID=Msa0900090;Name=Msa0900090
chr6_1 mRNA 95480207 95484235 95480207 ID=Msa0900090-mRNA-1;Parent=Msa0900090;Name=Msa0900090-mRNA-1;_AED=0.10;_eAED=0.10;_QI=190|1|1|1|0.87|0.77|9|269|209
chr6_1 exon 95480207 95480442 95480207 ID=Msa0900090-mRNA-1:exon:16491;Parent=Msa0900090-mRNA-1
chr6_1 exon 95480466 95480529 95480466 ID=Msa0900090-mRNA-1:exon:16490;Parent=Msa0900090-mRNA-1
chr6_1 exon 95481162 95481268 95481162 ID=Msa0900090-mRNA-1:exon:16489;Parent=Msa0900090-mRNA-1
chr6_1 exon 95481391 95481456 95481391 ID=Msa0900090-mRNA-1:exon:16488;Parent=Msa0900090-mRNA-1
chr6_1 exon 95481611 95481675 95481611 ID=Msa0900090-mRNA-1:exon:16487;Parent=Msa0900090-mRNA-1
chr6_1 exon 95481780 95481843 95481780 ID=Msa0900090-mRNA-1:exon:16486;Parent=Msa0900090-mRNA-1
chr6_1 exon 95483010 95483119 95483010 ID=Msa0900090-mRNA-1:exon:16485;Parent=Msa0900090-mRNA-1
chr6_1 exon 95483250 95483337 95483250 ID=Msa0900090-mRNA-1:exon:16484;Parent=Msa0900090-mRNA-1
chr6_1 exon 95483947 95484235 95483947 ID=Msa0900090-mRNA-1:exon:16483;Parent=Msa0900090-mRNA-1
chr6_1 five_prime_UTR 95484046 95484235 95484046 ID=Msa0900090-mRNA-1:five_prime_utr;Parent=Msa0900090-mRNA-1
chr6_1 CDS 95483947 95484045 95483947 ID=Msa0900090-mRNA-1:cds;Parent=Msa0900090-mRNA-1
chr6_1 CDS 95483250 95483337 95483250 ID=Msa0900090-mRNA-1:cds;Parent=Msa0900090-mRNA-1
chr6_1 CDS 95483010 95483119 95483010 ID=Msa0900090-mRNA-1:cds;Parent=Msa0900090-mRNA-1
chr6_1 CDS 95481780 95481843 95481780 ID=Msa0900090-mRNA-1:cds;Parent=Msa0900090-mRNA-1
chr6_1 CDS 95481611 95481675 95481611 ID=Msa0900090-mRNA-1:cds;Parent=Msa0900090-mRNA-1
chr6_1 CDS 95481391 95481456 95481391 ID=Msa0900090-mRNA-1:cds;Parent=Msa0900090-mRNA-1
chr6_1 CDS 95481162 95481268 95481162 ID=Msa0900090-mRNA-1:cds;Parent=Msa0900090-mRNA-1
chr6_1 CDS 95480499 95480529 95480499 ID=Msa0900090-mRNA-1:cds;Parent=Msa0900090-mRNA-1
chr6_1 three_prime_UTR 95480466 95480498 95480466 ID=Msa0900090-mRNA-1:three_prime_utr;Parent=Msa0900090-mRNA-1
chr6_1 three_prime_UTR 95480207 95480442 95480207 ID=Msa0900090-mRNA-1:three_prime_utr;Parent=Msa0900090-mRNA-1
Gene Sequence

>Msa0900090

ATGAGTGCTTCAAAGTTCATTAAATGTGTCACTGTTGGTGATGGTGCTGTTGGAAAAACTTGCATGCTCATTTGTTACACCAGTAACAAATTTCCCACTGATTATATACCAACAGTATTTGATAATTTTAGTGCAAATGTAGCTGTGGATGGAAGCATTGTGAATTTGGGACTATGGGACACTGCAGGCCAAGAAGATTATAGCAGGTTGAGGCCACTGAGCTATAGAGGAGCAGATATATTTGTCTTAGCATTTTCATTGATTAGTAGAGCTAGCTATGAAAATGTTCTTAAGAAGTGGATGCCAGAATTGCGTAGATTCGCCCCTAATGTACCAATTGTTCTTGTTGGCACAAAGTTGGATCTTCGTGAAGATCGTGGATATTTCGCTGATCACACGGGATATAATGTTATAACATCTGCTGAGGGAGAAGAACTGAGGAAACAAATTGGTGCAGCAGCGTACATCGAATGCAGCTCGAAGACTCAACAGAATGTGAAAGCTGTTTTTGATACTGCCATTAAGGTTGTTCTCCAACCTCCAAGGAGGAAAGAAATGCCAAGGAAGAAAAGGCAAAGAAGGTCCGGTTGCTCGTTTGTGGGTATTGTGTGTGGAGGTTGTGCTGCTTAA
Protein sequence

>Msa0900090

MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYFADHTGYNVITSAEGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRKEMPRKKRQRRSGCSFVGIVCGGCAA*