AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0507810


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0507810 MtrunA17_Chr3g0111961 99.589 487 1 1 1 487 1 486 0.0 990
Msa0507810 MtrunA17_Chr4g0057131 62.754 443 152 6 48 487 43 475 0.0 550
Msa0507810 MtrunA17_Chr3g0098921 44.342 433 207 9 57 474 33 446 9.85e-120 358
Msa0507810 MtrunA17_Chr5g0395821 46.099 423 200 8 51 464 26 429 1.96e-119 357
Msa0507810 MtrunA17_Chr7g0267961 51.360 331 147 5 150 466 103 433 3.88e-115 347
Msa0507810 MtrunA17_Chr7g0233651 47.590 332 160 5 155 472 92 423 7.78e-104 317
Msa0507810 MtrunA17_Chr7g0234591 47.305 334 160 6 159 476 99 432 1.40e-101 311
Msa0507810 MtrunA17_Chr7g0228191 48.065 310 151 4 167 466 13 322 5.38e-101 306
Msa0507810 MtrunA17_Chr7g0235181 42.824 432 207 10 44 464 3 405 2.08e-100 308
Msa0507810 MtrunA17_Chr2g0308501 42.988 328 177 5 170 487 8 335 1.23e-92 285
Msa0507810 MtrunA17_Chr2g0330601 34.659 352 186 7 151 487 51 373 2.12e-63 210
Msa0507810 MtrunA17_Chr2g0330681 37.710 297 149 9 162 443 94 369 8.23e-50 174
Msa0507810 MtrunA17_Chr7g0253861 23.113 212 157 3 256 465 48 255 1.54e-14 74.7
Msa0507810 MtrunA17_Chr5g0401671 22.945 292 160 9 186 463 312 552 1.35e-13 73.2
Msa0507810 MtrunA17_Chr1g0176241 24.521 261 180 10 204 461 235 481 1.68e-13 72.4
Msa0507810 MtrunA17_Chr6g0448921 26.708 161 112 3 219 377 57 213 6.97e-13 71.2
Msa0507810 MtrunA17_Chr8g0352821 24.719 267 183 10 224 481 186 443 1.14e-12 70.5
Msa0507810 MtrunA17_Chr7g0246741 28.655 171 116 3 296 464 361 527 4.40e-12 68.6
Msa0507810 MtrunA17_Chr3g0136971 25.414 181 128 4 200 378 441 616 1.13e-11 67.4
Msa0507810 MtrunA17_Chr2g0321211 27.854 219 115 8 234 413 24 238 1.82e-11 66.6
Msa0507810 MtrunA17_Chr5g0401661 23.776 286 165 10 186 463 402 642 1.92e-11 66.6
Msa0507810 MtrunA17_Chr4g0053651 24.000 250 174 9 224 463 292 535 2.66e-11 65.9
Msa0507810 MtrunA17_Chr1g0185501 25.263 190 134 6 275 462 41 224 3.39e-11 64.3
Msa0507810 MtrunA17_Chr2g0281451 27.094 203 128 6 189 377 16 212 4.29e-11 65.9
Msa0507810 MtrunA17_Chr1g0172501 23.826 298 176 9 209 462 263 553 4.70e-11 65.1
Msa0507810 MtrunA17_Chr4g0067151 25.991 227 133 9 257 462 21 233 5.34e-11 63.9
Msa0507810 MtrunA17_Chr4g0067151 22.800 250 182 6 219 461 76 321 6.70e-11 63.5
Msa0507810 MtrunA17_Chr6g0469371 79.412 34 7 0 276 309 27 60 8.18e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0507810 AT5G13840.1 79.226 491 88 6 1 487 1 481 0.0 726
Msa0507810 AT5G13840.2 79.226 491 88 6 1 487 1 481 0.0 726
Msa0507810 AT4G22910.1 62.299 435 149 5 56 487 61 483 0.0 546
Msa0507810 AT4G11920.1 62.332 446 147 6 48 487 45 475 0.0 531
Msa0507810 AT4G33260.1 43.823 429 206 7 49 464 16 422 3.02e-116 349
Msa0507810 AT4G33270.1 43.243 444 206 9 49 472 26 443 1.50e-115 348
Msa0507810 AT5G27570.1 51.111 315 145 3 159 464 110 424 2.07e-112 340
Msa0507810 AT4G33260.2 42.657 429 211 7 49 464 16 422 1.20e-110 335
Msa0507810 AT5G27080.1 49.841 315 149 3 159 464 102 416 9.26e-110 333
Msa0507810 AT5G26900.1 48.734 316 154 3 157 464 103 418 2.33e-107 327
Msa0507810 AT5G27945.1 45.045 333 173 5 141 464 71 402 2.88e-93 290
Msa0507810 AT5G13480.3 25.000 296 203 11 198 482 85 372 3.45e-15 78.6
Msa0507810 AT5G13480.4 25.000 296 203 11 198 482 85 372 4.31e-15 78.6
Msa0507810 AT5G13480.1 25.000 296 203 11 198 482 97 384 4.74e-15 78.2
Msa0507810 AT5G13480.2 25.000 296 203 11 198 482 108 395 4.89e-15 78.2
Msa0507810 AT5G52820.1 26.848 257 168 10 211 462 231 472 9.67e-15 77.0
Msa0507810 AT2G43770.1 22.170 212 159 3 256 465 46 253 3.05e-14 74.3
Msa0507810 AT5G23430.3 27.528 178 122 4 202 377 41 213 3.97e-14 75.5
Msa0507810 AT5G23430.2 27.528 178 122 4 202 377 41 213 3.97e-14 75.5
Msa0507810 AT5G23430.1 27.528 178 122 4 202 377 41 213 4.49e-14 75.5
Msa0507810 AT5G08390.1 26.966 178 123 4 202 377 41 213 5.60e-14 75.1
Msa0507810 AT3G49660.1 25.893 224 135 8 257 463 18 227 8.04e-14 72.8
Msa0507810 AT3G49660.1 22.581 248 183 5 219 461 69 312 4.03e-12 67.8
Msa0507810 AT1G61210.1 26.257 179 123 5 202 377 40 212 1.99e-12 70.5
Msa0507810 AT1G61210.3 26.257 179 123 5 202 377 40 212 2.09e-12 70.5
Msa0507810 AT1G61210.2 26.257 179 123 5 202 377 40 212 2.09e-12 70.5
Msa0507810 AT1G11160.4 27.933 179 120 5 202 377 40 212 2.74e-12 69.7
Msa0507810 AT1G11160.2 27.933 179 120 5 202 377 40 212 2.88e-12 69.7
Msa0507810 AT1G11160.1 27.933 179 120 5 202 377 40 212 2.93e-12 69.7
Msa0507810 AT3G18130.1 27.344 256 156 8 232 463 74 323 3.92e-12 67.8
Msa0507810 AT1G11160.3 27.564 156 107 3 224 377 19 170 5.84e-12 68.9
Msa0507810 AT4G35370.1 26.230 183 87 6 224 380 219 379 6.08e-12 67.8
Msa0507810 AT5G25150.1 24.747 198 142 5 193 388 433 625 8.91e-12 68.2
Msa0507810 AT3G44530.1 27.313 227 124 7 224 413 16 238 9.19e-12 68.2
Msa0507810 AT3G44530.2 27.313 227 124 7 224 413 16 238 9.50e-12 68.2
Msa0507810 AT5G25150.2 24.747 198 142 5 193 388 433 625 1.01e-11 67.8
Msa0507810 AT1G15440.2 28.977 176 119 3 296 469 341 512 2.42e-11 66.6
Msa0507810 AT1G15440.1 28.977 176 119 3 296 469 381 552 2.64e-11 66.6
Msa0507810 AT5G43920.1 25.140 179 125 3 291 463 211 386 3.23e-11 65.9

Find 153 sgRNAs with CRISPR-Local

Find 247 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCATGGAATTCTCGCATTT+TGG 0.202786 3_4:-55422580 Msa0507810:CDS
CTTACCTTGTGGGGCGTCTT+AGG 0.222128 3_4:+55423756 None:intergenic
CTGATCGGTGTATTCGTTTC+TGG 0.223974 3_4:-55422085 Msa0507810:CDS
GGGATGAGACTCTGCGGTTT+TGG 0.238154 3_4:-55421526 Msa0507810:CDS
TGCTTATGAATCATCTGATT+TGG 0.243659 3_4:+55421342 None:intergenic
CAAAGGCCTGTATCTTTAAC+TGG 0.271405 3_4:+55421380 None:intergenic
CAGAGCAACCTTCTCGTATC+TGG 0.287630 3_4:-55422119 Msa0507810:CDS
GAAGTTGTTGTTGAGTAAAA+TGG 0.291178 3_4:+55424348 None:intergenic
CTCGTGTTTGGTATATAATA+TGG 0.294709 3_4:+55421224 None:intergenic
AATTAGGTTGCAACTCTAAC+TGG 0.295863 3_4:-55421725 Msa0507810:intron
AATATCGAAGGCGAAGAAAA+AGG 0.319187 3_4:+55423840 None:intergenic
TTGGCACTTGTGTTTATCTC+TGG 0.333779 3_4:-55422979 Msa0507810:CDS
GCTTATGAATCATCTGATTT+GGG 0.337855 3_4:+55421343 None:intergenic
TCAAAAGCTTTACAATTTGT+AGG 0.355263 3_4:+55421197 None:intergenic
AGGGTTCCAAGCGACTTTAT+TGG 0.361219 3_4:-55422516 Msa0507810:CDS
TCTCCTTCTTCTTCTCCTGC+AGG 0.390074 3_4:-55423942 Msa0507810:CDS
TCATTACTCCCTTCTTTAAC+CGG 0.390491 3_4:+55424014 None:intergenic
GACTTTATTGGCAAGCTTGT+CGG 0.390886 3_4:-55422504 Msa0507810:CDS
TCGATATTTGGAAGAAATGA+TGG 0.394918 3_4:-55423825 Msa0507810:CDS
TACAAATGGTGGTCAAGTTC+AGG 0.401103 3_4:-55422769 Msa0507810:intron
TTTGTAGGTTTACTCGTGTT+TGG 0.401723 3_4:+55421212 None:intergenic
TCTTCTTCTCCTGCAGGTTG+TGG 0.401970 3_4:-55423936 Msa0507810:CDS
GGAACTTTCCTAGGAGGCTT+AGG 0.402674 3_4:+55423777 None:intergenic
TTCATATCCATTGGTACAAA+TGG 0.402689 3_4:-55422783 Msa0507810:CDS
CCTTCAACTTGACAGGTTTG+TGG 0.403871 3_4:-55422384 Msa0507810:intron
TCTCCTGCAGGTTGTGGTGT+TGG 0.409448 3_4:-55423930 Msa0507810:CDS
GATGACCGGGAACTTGCTTC+TGG 0.413514 3_4:-55422345 Msa0507810:CDS
GTTATTGTTGACATCCCTGC+TGG 0.415431 3_4:+55424209 None:intergenic
CTCTGTTGACACTGGAAGCC+AGG 0.417288 3_4:-55422036 Msa0507810:intron
TTCTGGTGGTAATGATAATC+AGG 0.417463 3_4:-55422328 Msa0507810:intron
TACCACCAGAAGCAAGTTCC+CGG 0.418042 3_4:+55422340 None:intergenic
TGCAGGTGTGTAACCTTGCT+TGG 0.418904 3_4:-55421935 Msa0507810:intron
TGTGACTTGGGGCCTTATGA+TGG 0.421524 3_4:-55422840 Msa0507810:CDS
TGCAATGTCTCCTGATGGTC+AGG 0.422711 3_4:-55421678 Msa0507810:intron
TTTACTTGAATCTTGTGGAT+TGG 0.423069 3_4:-55423030 Msa0507810:CDS
GCACGAGGCGAAGCGGAAGA+AGG 0.429921 3_4:+55424155 None:intergenic
GGAGTAATGAGGCTTATAAT+AGG 0.434256 3_4:-55424001 Msa0507810:CDS
CAGTGTCAACAGAGTTCAAT+TGG 0.437042 3_4:+55422045 None:intergenic
CTACTCCTCCTAAGCCTCCT+AGG 0.441271 3_4:-55423785 Msa0507810:CDS
CGTTTCTGGAACACGACAAA+TGG 0.442087 3_4:-55422071 Msa0507810:CDS
GGTAACTAAGCTGTGTGACT+TGG 0.442507 3_4:-55422853 Msa0507810:CDS
ACTCTCAACAACCAACTTTG+AGG 0.442538 3_4:-55422190 Msa0507810:CDS
TGCAAGAAGGTCAGAACAAT+GGG 0.442773 3_4:-55422630 Msa0507810:CDS
GTAACTAAGCTGTGTGACTT+GGG 0.457093 3_4:-55422852 Msa0507810:CDS
GAATCTCTCTGTGAGAGAAA+AGG 0.458867 3_4:+55424372 None:intergenic
AATCTCTCTGTGAGAGAAAA+GGG 0.461748 3_4:+55424373 None:intergenic
GATACAGGCCTTTGGTCACT+AGG 0.464727 3_4:-55421371 Msa0507810:CDS
CAGGCCCCAGTTAAAGATAC+AGG 0.466060 3_4:-55421386 Msa0507810:CDS
GAAGAAGGAGAAGCAAAATC+AGG 0.474147 3_4:+55423954 None:intergenic
CAGACAATAGTGACTGGTGC+TGG 0.478559 3_4:-55421548 Msa0507810:CDS
GGAGGGCATCAAACAAGAAC+CGG 0.479441 3_4:-55422609 Msa0507810:CDS
CACGAGGCGAAGCGGAAGAA+GGG 0.481206 3_4:+55424156 None:intergenic
AGGACCCCTCCTTGGTCCAC+TGG 0.482322 3_4:+55422805 None:intergenic
AATAATACCTTTGCTAGTGA+TGG 0.483310 3_4:+55421843 None:intergenic
TCAAACAAGAACCGGTGTCT+TGG 0.489887 3_4:-55422601 Msa0507810:CDS
TCCCTTCTTTAACCGGTGAC+TGG 0.494990 3_4:+55424021 None:intergenic
GACAGGTTTGTGGATTGAAA+TGG 0.496996 3_4:-55422374 Msa0507810:intron
TTGACCACCATTTGTACCAA+TGG 0.497202 3_4:+55422776 None:intergenic
TCTTCAAGACTGCATACATT+CGG 0.497264 3_4:-55424056 Msa0507810:CDS
AGCAAGTTCCCGGTCATCAC+AGG 0.498721 3_4:+55422350 None:intergenic
TGGACATTTACCTGACCATC+AGG 0.498898 3_4:+55421668 None:intergenic
TGGCTTCAGGAAGCAGGGAT+AGG 0.505574 3_4:-55422560 Msa0507810:CDS
CAGTTAAAGATACAGGCCTT+TGG 0.507215 3_4:-55421379 Msa0507810:CDS
TCAGGTCTAAACCTCCCAGC+AGG 0.508097 3_4:-55424224 Msa0507810:CDS
AGCTTGCCAATAAAGTCGCT+TGG 0.510546 3_4:+55422510 None:intergenic
AACCAGTCACCGGTTAAAGA+AGG 0.514252 3_4:-55424023 Msa0507810:CDS
ATTTGTACCAATGGATATGA+AGG 0.514939 3_4:+55422785 None:intergenic
AACCTCAACATATTCTTACT+CGG 0.518937 3_4:+55423891 None:intergenic
TGAAATGGTCCTGTGATGAC+CGG 0.522032 3_4:-55422359 Msa0507810:CDS
TCTGTCCAGTGGACCAAGGA+GGG 0.523069 3_4:-55422810 Msa0507810:CDS
CGATATTTGGAAGAAATGAT+GGG 0.526164 3_4:-55423824 Msa0507810:CDS
TATATGAGCAGCTATTGGTA+TGG 0.528902 3_4:-55422220 Msa0507810:intron
GGATATGAAGGACCCCTCCT+TGG 0.529583 3_4:+55422797 None:intergenic
GAACCAACACCACAACCTGC+AGG 0.531310 3_4:+55423927 None:intergenic
ACTTTCCTAGGAGGCTTAGG+AGG 0.531462 3_4:+55423780 None:intergenic
TGAATCATCTGATTTGGGTG+CGG 0.533378 3_4:+55421348 None:intergenic
TAAAAGTCATCTTGAAGTGA+AGG 0.536272 3_4:+55423049 None:intergenic
CAAGAACCGGTGTCTTGGCA+TGG 0.537570 3_4:-55422596 Msa0507810:CDS
TATGAATCTGTCACTACACT+TGG 0.538788 3_4:+55424091 None:intergenic
GAATCTGTCACTACACTTGG+AGG 0.541099 3_4:+55424094 None:intergenic
CTGCTGTGAAAGCCATTGCT+TGG 0.542537 3_4:-55422151 Msa0507810:CDS
AGCAGCAAGCATGGAAGATG+AGG 0.542815 3_4:-55421323 Msa0507810:three_prime_UTR
ACAGAACAGACACCATCATA+AGG 0.543861 3_4:+55422828 None:intergenic
GGCGTCTTAGGAACTTTCCT+AGG 0.547742 3_4:+55423768 None:intergenic
GAATATGTTGAGGTTTAAGA+CGG 0.551632 3_4:-55423883 Msa0507810:CDS
TTACTCACAAAATCAAATCA+TGG 0.552909 3_4:-55421877 Msa0507810:CDS
GAGGGGTCCTTCATATCCAT+TGG 0.553735 3_4:-55422792 Msa0507810:CDS
CAACCTGCAGGAGAAGAAGA+AGG 0.554584 3_4:+55423939 None:intergenic
TTCTTACTCGGACTCACCAA+CGG 0.555252 3_4:+55423903 None:intergenic
AGGTTTAAGACGGAGAGTTG+TGG 0.557810 3_4:-55423873 Msa0507810:CDS
CACAAAATCAAATCATGGTG+TGG 0.560137 3_4:-55421872 Msa0507810:CDS
TTATTGTTGACATCCCTGCT+GGG 0.562161 3_4:+55424210 None:intergenic
GAAATATCCATCACTAGCAA+AGG 0.565549 3_4:-55421850 Msa0507810:intron
AATACTCTAGCAGTTGGACT+TGG 0.567179 3_4:-55422998 Msa0507810:CDS
ATGCAAGAAGGTCAGAACAA+TGG 0.567203 3_4:-55422631 Msa0507810:CDS
TGATTCATAAGCAGCAAGCA+TGG 0.567846 3_4:-55421332 Msa0507810:three_prime_UTR
AACCTTCTCGTATCTGGAGG+TGG 0.572049 3_4:-55422113 Msa0507810:CDS
TAGCGTTTCAAGACGGAGGG+AGG 0.574911 3_4:+55424187 None:intergenic
ATGGAGAGGGTGTTGATGAG+AGG 0.580002 3_4:+55424123 None:intergenic
TTGTGGTGTTGGTTCGCCGT+TGG 0.584804 3_4:-55423919 Msa0507810:CDS
ACCAGTCACCGGTTAAAGAA+GGG 0.584887 3_4:-55424022 Msa0507810:CDS
TCACAAAATACTCTAGCAGT+TGG 0.586601 3_4:-55423004 Msa0507810:CDS
ACGAGAAGGTTGCTCTGATG+AGG 0.586636 3_4:+55422125 None:intergenic
ATGGTGTCTGTTCTGTCCAG+TGG 0.586950 3_4:-55422821 Msa0507810:CDS
AAAGGCCTGTATCTTTAACT+GGG 0.587939 3_4:+55421381 None:intergenic
AGACAATAGTGACTGGTGCT+GGG 0.590497 3_4:-55421547 Msa0507810:CDS
CAATTGAACTCTGTTGACAC+TGG 0.590791 3_4:-55422044 Msa0507810:CDS
TCATTTCTTCCAAATATCGA+AGG 0.592894 3_4:+55423828 None:intergenic
CTGGAGGTGGAACTGCTGAT+CGG 0.593470 3_4:-55422100 Msa0507810:CDS
GACCATCAGGAGACATTGCA+AGG 0.595767 3_4:+55421681 None:intergenic
TTCTGTCCAGTGGACCAAGG+AGG 0.598013 3_4:-55422811 Msa0507810:CDS
ATATCCATTGGTACAAATGG+TGG 0.598496 3_4:-55422780 Msa0507810:CDS
GTCTTAGGAACTTTCCTAGG+AGG 0.599352 3_4:+55423771 None:intergenic
ACGAGGCGAAGCGGAAGAAG+GGG 0.599832 3_4:+55424157 None:intergenic
TACCTTGCAATGTCTCCTGA+TGG 0.601989 3_4:-55421683 Msa0507810:CDS
TGCTCTGTAAGCCTCAAAGT+TGG 0.603299 3_4:+55422179 None:intergenic
TTATGGTAACAGATTTGGGA+TGG 0.603590 3_4:-55422660 Msa0507810:intron
GAAATGGTCCTGTGATGACC+GGG 0.607983 3_4:-55422358 Msa0507810:CDS
CTGTTCTGTCCAGTGGACCA+AGG 0.611176 3_4:-55422814 Msa0507810:CDS
CAATTGCAGACAATAGTGAC+TGG 0.618146 3_4:-55421554 Msa0507810:intron
CTGTCCAGTGGACCAAGGAG+GGG 0.619554 3_4:-55422809 Msa0507810:CDS
GGATGGTACTAAATGCAAGA+AGG 0.620237 3_4:-55422643 Msa0507810:CDS
TAACTAAGCTGTGTGACTTG+GGG 0.621200 3_4:-55422851 Msa0507810:CDS
CTGATGAGGTGACCAAGCAA+TGG 0.623695 3_4:+55422139 None:intergenic
AGCAACCTTCTCGTATCTGG+AGG 0.630408 3_4:-55422116 Msa0507810:CDS
TCGATAGCGTTTCAAGACGG+AGG 0.630566 3_4:+55424183 None:intergenic
CGATAGCGTTTCAAGACGGA+GGG 0.630872 3_4:+55424184 None:intergenic
GGGTGCGGCCTAGTGACCAA+AGG 0.631232 3_4:+55421363 None:intergenic
TGTCAACAGAGTTCAATTGG+TGG 0.632166 3_4:+55422048 None:intergenic
CAGGTCTAAACCTCCCAGCA+GGG 0.636073 3_4:-55424223 Msa0507810:CDS
ACATACTTCAGCATGACATG+AGG 0.639225 3_4:-55422536 Msa0507810:CDS
TTGTTGACATCCCTGCTGGG+AGG 0.640070 3_4:+55424213 None:intergenic
TTCCACCTCCAGATACGAGA+AGG 0.640711 3_4:+55422111 None:intergenic
AGAATTCCATGCCAAGACAC+CGG 0.640925 3_4:+55422590 None:intergenic
ATTAATCGATAACCAGTCAC+CGG 0.643856 3_4:-55424033 Msa0507810:CDS
AGTTCCTAAGACGCCCCACA+AGG 0.646840 3_4:-55423760 Msa0507810:intron
AAGAAGGTCAGAACAATGGG+AGG 0.649698 3_4:-55422627 Msa0507810:CDS
TGAGATCGCACGAGGCGAAG+CGG 0.650294 3_4:+55424148 None:intergenic
GACAATAGTGACTGGTGCTG+GGG 0.659564 3_4:-55421546 Msa0507810:CDS
CATACTTCAGCATGACATGA+GGG 0.660026 3_4:-55422535 Msa0507810:CDS
CGAGGCGAAGCGGAAGAAGG+GGG 0.662895 3_4:+55424158 None:intergenic
AGAAGGTCAGAACAATGGGA+GGG 0.662939 3_4:-55422626 Msa0507810:CDS
GTGTCGATAGCGTTTCAAGA+CGG 0.664580 3_4:+55424180 None:intergenic
GGTTAAAGAAGGGAGTAATG+AGG 0.665035 3_4:-55424012 Msa0507810:CDS
GACCGGGAACTTGCTTCTGG+TGG 0.665213 3_4:-55422342 Msa0507810:CDS
GTCCGAGTAAGAATATGTTG+AGG 0.666814 3_4:-55423893 Msa0507810:CDS
AATGAGCTAGTGAGTACACA+TGG 0.668243 3_4:-55421900 Msa0507810:CDS
GGTATAGTACTCTCATGCTG+TGG 0.672992 3_4:+55421702 None:intergenic
GCTTGTCGGCCACAAATCCG+AGG 0.677734 3_4:-55422490 Msa0507810:intron
GAGAGGTTTGAGATCGCACG+AGG 0.678836 3_4:+55424140 None:intergenic
AGTCTTGAAGATGATCTGCA+AGG 0.682253 3_4:+55424068 None:intergenic
AAGGCCTGTATCTTTAACTG+GGG 0.685695 3_4:+55421382 None:intergenic
GTGCTGGGGATGAGACTCTG+CGG 0.730545 3_4:-55421532 Msa0507810:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAATCAGAAAAAAA+TGG - chr3_4:55421301-55421320 Msa0507810:three_prime_UTR 10.0%
!! TAATTAAGAAAAATTTCATA+TGG + chr3_4:55423828-55423847 None:intergenic 10.0%
!!! ATATGAAATTTTTCTTAATT+AGG - chr3_4:55423827-55423846 Msa0507810:CDS 10.0%
!! TTGTTTATGATATAATAATA+GGG + chr3_4:55423941-55423960 None:intergenic 10.0%
!! TTTGTTTATGATATAATAAT+AGG + chr3_4:55423942-55423961 None:intergenic 10.0%
!! AAAATTGATGTAAAAATTAA+GGG + chr3_4:55423975-55423994 None:intergenic 10.0%
!! TAAAATTGATGTAAAAATTA+AGG + chr3_4:55423976-55423995 None:intergenic 10.0%
!! AAAAAACTATCTAAATAAAA+TGG + chr3_4:55424288-55424307 None:intergenic 10.0%
!! TCAAAAAATTTACACAAAAA+CGG + chr3_4:55421859-55421878 None:intergenic 15.0%
!!! ATTTTATTGTATTTGAGAAT+TGG - chr3_4:55421894-55421913 Msa0507810:CDS 15.0%
!!! TTTTATTGTATTTGAGAATT+GGG - chr3_4:55421895-55421914 Msa0507810:CDS 15.0%
!! AATATGCAATAATTGAAAAT+TGG + chr3_4:55424113-55424132 None:intergenic 15.0%
!!! AAAGTTTTTGAGGTTTATAA+CGG + chr3_4:55421161-55421180 None:intergenic 20.0%
!!! CACAATTAATTTGTAAAACT+AGG + chr3_4:55422067-55422086 None:intergenic 20.0%
!!! ACAAATTAATTGTGATTTTG+AGG - chr3_4:55422073-55422092 Msa0507810:CDS 20.0%
!! AGTTACAATCATTAATATTG+CGG - chr3_4:55422156-55422175 Msa0507810:CDS 20.0%
!!! ATTAGGATTTTCTACAATTA+GGG + chr3_4:55422280-55422299 None:intergenic 20.0%
!! TATGTAAGTTATGAAATTGA+TGG - chr3_4:55423151-55423170 Msa0507810:intron 20.0%
!!! ATATTGATTCTTCAAAAAAG+AGG + chr3_4:55423570-55423589 None:intergenic 20.0%
!!! TATTTAATGCATAATTTTGC+AGG - chr3_4:55423616-55423635 Msa0507810:intron 20.0%
!! TTGTTGAAATCTGAACTTTT+TGG - chr3_4:55421590-55421609 Msa0507810:intron 25.0%
! AAGATAAAAACTTACCTTGT+GGG + chr3_4:55421825-55421844 None:intergenic 25.0%
! AAAGATAAAAACTTACCTTG+TGG + chr3_4:55421826-55421845 None:intergenic 25.0%
!!! AAAGTGTATATCGATTTTGT+AGG - chr3_4:55421927-55421946 Msa0507810:CDS 25.0%
! AACATAAGAAACTGTTATGT+TGG - chr3_4:55422238-55422257 Msa0507810:intron 25.0%
!!! ACAATTAGGGTTTTAAATAG+AGG + chr3_4:55422267-55422286 None:intergenic 25.0%
!! GATTAGGATTTTCTACAATT+AGG + chr3_4:55422281-55422300 None:intergenic 25.0%
! AATTGTAGAAAATCCTAATC+TGG - chr3_4:55422281-55422300 Msa0507810:intron 25.0%
!!! AACTCTTTTAAATCTAGAGT+TGG + chr3_4:55422334-55422353 None:intergenic 25.0%
! CAAAGTTTAAGTATTTGAGA+GGG - chr3_4:55422382-55422401 Msa0507810:intron 25.0%
! ATTGAACATATATCTTTGTG+TGG - chr3_4:55422686-55422705 Msa0507810:intron 25.0%
! ATACTAAACAGATAGATAGA+AGG + chr3_4:55423289-55423308 None:intergenic 25.0%
! TTACTCACAAAATCAAATCA+TGG - chr3_4:55423691-55423710 Msa0507810:intron 25.0%
!! ACTTGATAATCATGTCTAAT+TGG + chr3_4:55423785-55423804 None:intergenic 25.0%
! TCAAAAGCTTTACAATTTGT+AGG + chr3_4:55424374-55424393 None:intergenic 25.0%
! GAAGTTGTTGTTGAGTAAAA+TGG + chr3_4:55421223-55421242 None:intergenic 30.0%
AACCTCAACATATTCTTACT+CGG + chr3_4:55421680-55421699 None:intergenic 30.0%
GAATATGTTGAGGTTTAAGA+CGG - chr3_4:55421685-55421704 Msa0507810:CDS 30.0%
TCATTTCTTCCAAATATCGA+AGG + chr3_4:55421743-55421762 None:intergenic 30.0%
TCGATATTTGGAAGAAATGA+TGG - chr3_4:55421743-55421762 Msa0507810:intron 30.0%
CGATATTTGGAAGAAATGAT+GGG - chr3_4:55421744-55421763 Msa0507810:intron 30.0%
!!! AAATGATGGGTTTTGTAATG+AGG - chr3_4:55421757-55421776 Msa0507810:intron 30.0%
!!! AATGATGGGTTTTGTAATGA+GGG - chr3_4:55421758-55421777 Msa0507810:intron 30.0%
AGATAAAAACTTACCTTGTG+GGG + chr3_4:55421824-55421843 None:intergenic 30.0%
TATGCTATGACTCTATCTTA+GGG + chr3_4:55421988-55422007 None:intergenic 30.0%
AAAACTAGGATTGTCATGAT+TGG + chr3_4:55422053-55422072 None:intergenic 30.0%
AATCAACTCATAACCAGATT+AGG + chr3_4:55422297-55422316 None:intergenic 30.0%
CCTCTCAAATACTTAAACTT+TGG + chr3_4:55422384-55422403 None:intergenic 30.0%
CCAAAGTTTAAGTATTTGAG+AGG - chr3_4:55422381-55422400 Msa0507810:intron 30.0%
TAAAAGTCATCTTGAAGTGA+AGG + chr3_4:55422522-55422541 None:intergenic 30.0%
! TGACTTTTACTTGAATCTTG+TGG - chr3_4:55422533-55422552 Msa0507810:CDS 30.0%
TTTACTTGAATCTTGTGGAT+TGG - chr3_4:55422538-55422557 Msa0507810:CDS 30.0%
! TATATCTTTGTGTGGTTTTC+AGG - chr3_4:55422694-55422713 Msa0507810:intron 30.0%
ATTTGTACCAATGGATATGA+AGG + chr3_4:55422786-55422805 None:intergenic 30.0%
TTCATATCCATTGGTACAAA+TGG - chr3_4:55422785-55422804 Msa0507810:CDS 30.0%
CAAATCAAAGTAAGCTAACA+AGG + chr3_4:55422827-55422846 None:intergenic 30.0%
! CTTGTTAGCTTACTTTGATT+TGG - chr3_4:55422825-55422844 Msa0507810:CDS 30.0%
CAATCATCAAATCAAACACA+TGG + chr3_4:55422860-55422879 None:intergenic 30.0%
! GTCAAATGGTTTTTATACCT+CGG + chr3_4:55423098-55423117 None:intergenic 30.0%
! TTTTTATCCTTCAACTTGAC+AGG - chr3_4:55423177-55423196 Msa0507810:intron 30.0%
! TGTTTTATATGAGCAGCTAT+TGG - chr3_4:55423343-55423362 Msa0507810:intron 30.0%
! TTACATTTTTACTCCAAGCA+AGG + chr3_4:55423649-55423668 None:intergenic 30.0%
AATAATACCTTTGCTAGTGA+TGG + chr3_4:55423728-55423747 None:intergenic 30.0%
TAGGGAATTATGTTGTTATG+TGG + chr3_4:55423923-55423942 None:intergenic 30.0%
! TTACAGGTGTTTTCATTGAT+GGG + chr3_4:55424076-55424095 None:intergenic 30.0%
! GAGTTCTTTTAAGCAATACT+AGG + chr3_4:55424141-55424160 None:intergenic 30.0%
CTGAAGCAAAAAGAAAAGTT+AGG + chr3_4:55424165-55424184 None:intergenic 30.0%
! CTAACTTTTCTTTTTGCTTC+AGG - chr3_4:55424163-55424182 Msa0507810:CDS 30.0%
GCTTATGAATCATCTGATTT+GGG + chr3_4:55424228-55424247 None:intergenic 30.0%
TGCTTATGAATCATCTGATT+TGG + chr3_4:55424229-55424248 None:intergenic 30.0%
CTCGTGTTTGGTATATAATA+TGG + chr3_4:55424347-55424366 None:intergenic 30.0%
! AGACAGAGAGAAAGTTTTTG+AGG + chr3_4:55421171-55421190 None:intergenic 35.0%
AATCTCTCTGTGAGAGAAAA+GGG + chr3_4:55421198-55421217 None:intergenic 35.0%
TCACCACAAGCAAAAAAATC+AGG - chr3_4:55421326-55421345 Msa0507810:three_prime_UTR 35.0%
!!! AGACCTGATTTTTTTGCTTG+TGG + chr3_4:55421332-55421351 None:intergenic 35.0%
TATGAATCTGTCACTACACT+TGG + chr3_4:55421480-55421499 None:intergenic 35.0%
TCTTCAAGACTGCATACATT+CGG - chr3_4:55421512-55421531 Msa0507810:CDS 35.0%
ATTAATCGATAACCAGTCAC+CGG - chr3_4:55421535-55421554 Msa0507810:CDS 35.0%
TCATTACTCCCTTCTTTAAC+CGG + chr3_4:55421557-55421576 None:intergenic 35.0%
GGAGTAATGAGGCTTATAAT+AGG - chr3_4:55421567-55421586 Msa0507810:intron 35.0%
AATATCGAAGGCGAAGAAAA+AGG + chr3_4:55421731-55421750 None:intergenic 35.0%
! TTTTCTTCGCCTTCGATATT+TGG - chr3_4:55421731-55421750 Msa0507810:intron 35.0%
ATGACTCTATCTTAGGGTTT+AGG + chr3_4:55421982-55422001 None:intergenic 35.0%
CTATGCTATGACTCTATCTT+AGG + chr3_4:55421989-55422008 None:intergenic 35.0%
TGTCATTACAACGTAAGACT+AGG - chr3_4:55422109-55422128 Msa0507810:CDS 35.0%
GTCATTACAACGTAAGACTA+GGG - chr3_4:55422110-55422129 Msa0507810:CDS 35.0%
!!! CGTAAGACTAGGGTTTTAAA+TGG - chr3_4:55422120-55422139 Msa0507810:CDS 35.0%
!!! AAGACTAGGGTTTTAAATGG+AGG - chr3_4:55422123-55422142 Msa0507810:CDS 35.0%
!! AACTGCTAGAGTATTTTGTG+AGG + chr3_4:55422565-55422584 None:intergenic 35.0%
TCACAAAATACTCTAGCAGT+TGG - chr3_4:55422564-55422583 Msa0507810:CDS 35.0%
ATGATTATGAACTTCCCAAG+TGG - chr3_4:55422636-55422655 Msa0507810:CDS 35.0%
! TTGTGATATTGTTGCCACTT+GGG + chr3_4:55422653-55422672 None:intergenic 35.0%
ATATCCATTGGTACAAATGG+TGG - chr3_4:55422788-55422807 Msa0507810:CDS 35.0%
!!! AAGAGAGCTTTTTTGCCTTA+TGG - chr3_4:55422891-55422910 Msa0507810:intron 35.0%
TTGCCTTATGGTAACAGATT+TGG - chr3_4:55422903-55422922 Msa0507810:intron 35.0%
TGCCTTATGGTAACAGATTT+GGG - chr3_4:55422904-55422923 Msa0507810:intron 35.0%
ATCCCAAATCTGTTACCATA+AGG + chr3_4:55422909-55422928 None:intergenic 35.0%
TTATGGTAACAGATTTGGGA+TGG - chr3_4:55422908-55422927 Msa0507810:intron 35.0%
! GTTTTTATACCTCGGATTTG+TGG + chr3_4:55423090-55423109 None:intergenic 35.0%
! TTCTGGTGGTAATGATAATC+AGG - chr3_4:55423240-55423259 Msa0507810:intron 35.0%
TATATGAGCAGCTATTGGTA+TGG - chr3_4:55423348-55423367 Msa0507810:intron 35.0%
AAGAGGTAAGAAAGTAAACC+TGG + chr3_4:55423553-55423572 None:intergenic 35.0%
TGATAAGATGCTCTCTTGTT+TGG + chr3_4:55423593-55423612 None:intergenic 35.0%
CACAAAATCAAATCATGGTG+TGG - chr3_4:55423696-55423715 Msa0507810:intron 35.0%
GAAATATCCATCACTAGCAA+AGG - chr3_4:55423718-55423737 Msa0507810:intron 35.0%
! AATTAGGTTGCAACTCTAAC+TGG - chr3_4:55423843-55423862 Msa0507810:CDS 35.0%
! CTTACAGGTGTTTTCATTGA+TGG + chr3_4:55424077-55424096 None:intergenic 35.0%
AAAGGCCTGTATCTTTAACT+GGG + chr3_4:55424190-55424209 None:intergenic 35.0%
TTTGTAGGTTTACTCGTGTT+TGG + chr3_4:55424359-55424378 None:intergenic 35.0%
GAATCTCTCTGTGAGAGAAA+AGG + chr3_4:55421199-55421218 None:intergenic 40.0%
TTATTGTTGACATCCCTGCT+GGG + chr3_4:55421361-55421380 None:intergenic 40.0%
!! TTGGAGGATTTTGATGGAGA+GGG + chr3_4:55421461-55421480 None:intergenic 40.0%
! CTACACTTGGAGGATTTTGA+TGG + chr3_4:55421467-55421486 None:intergenic 40.0%
AGTCTTGAAGATGATCTGCA+AGG + chr3_4:55421503-55421522 None:intergenic 40.0%
GGTTAAAGAAGGGAGTAATG+AGG - chr3_4:55421556-55421575 Msa0507810:intron 40.0%
GAAGAAGGAGAAGCAAAATC+AGG + chr3_4:55421617-55421636 None:intergenic 40.0%
GTCCGAGTAAGAATATGTTG+AGG - chr3_4:55421675-55421694 Msa0507810:intron 40.0%
AGTGAGTGAGACAGTGTATA+AGG - chr3_4:55422014-55422033 Msa0507810:intron 40.0%
AATACTCTAGCAGTTGGACT+TGG - chr3_4:55422570-55422589 Msa0507810:CDS 40.0%
TTGGCACTTGTGTTTATCTC+TGG - chr3_4:55422589-55422608 Msa0507810:CDS 40.0%
GTTGTGATATTGTTGCCACT+TGG + chr3_4:55422654-55422673 None:intergenic 40.0%
GTAACTAAGCTGTGTGACTT+GGG - chr3_4:55422716-55422735 Msa0507810:intron 40.0%
TAACTAAGCTGTGTGACTTG+GGG - chr3_4:55422717-55422736 Msa0507810:intron 40.0%
ACAGAACAGACACCATCATA+AGG + chr3_4:55422743-55422762 None:intergenic 40.0%
TTGACCACCATTTGTACCAA+TGG + chr3_4:55422795-55422814 None:intergenic 40.0%
TACAAATGGTGGTCAAGTTC+AGG - chr3_4:55422799-55422818 Msa0507810:CDS 40.0%
GGATGGTACTAAATGCAAGA+AGG - chr3_4:55422925-55422944 Msa0507810:intron 40.0%
ATGCAAGAAGGTCAGAACAA+TGG - chr3_4:55422937-55422956 Msa0507810:intron 40.0%
TGCAAGAAGGTCAGAACAAT+GGG - chr3_4:55422938-55422957 Msa0507810:intron 40.0%
!!! AATTCTCGCATTTTGGCTTC+AGG - chr3_4:55422995-55423014 Msa0507810:CDS 40.0%
ACATACTTCAGCATGACATG+AGG - chr3_4:55423032-55423051 Msa0507810:CDS 40.0%
CATACTTCAGCATGACATGA+GGG - chr3_4:55423033-55423052 Msa0507810:CDS 40.0%
GACTTTATTGGCAAGCTTGT+CGG - chr3_4:55423064-55423083 Msa0507810:CDS 40.0%
CTCAATGCGTATCTGTCAAA+TGG + chr3_4:55423112-55423131 None:intergenic 40.0%
! GACAGGTTTGTGGATTGAAA+TGG - chr3_4:55423194-55423213 Msa0507810:intron 40.0%
ACTCTCAACAACCAACTTTG+AGG - chr3_4:55423378-55423397 Msa0507810:intron 40.0%
TGTCAACAGAGTTCAATTGG+TGG + chr3_4:55423523-55423542 None:intergenic 40.0%
CAGTGTCAACAGAGTTCAAT+TGG + chr3_4:55423526-55423545 None:intergenic 40.0%
CAATTGAACTCTGTTGACAC+TGG - chr3_4:55423524-55423543 Msa0507810:intron 40.0%
AATGAGCTAGTGAGTACACA+TGG - chr3_4:55423668-55423687 Msa0507810:intron 40.0%
CAATTGCAGACAATAGTGAC+TGG - chr3_4:55424014-55424033 Msa0507810:CDS 40.0%
AAGGCCTGTATCTTTAACTG+GGG + chr3_4:55424189-55424208 None:intergenic 40.0%
CAAAGGCCTGTATCTTTAAC+TGG + chr3_4:55424191-55424210 None:intergenic 40.0%
CAGTTAAAGATACAGGCCTT+TGG - chr3_4:55424189-55424208 Msa0507810:CDS 40.0%
!! TGAATCATCTGATTTGGGTG+CGG + chr3_4:55424223-55424242 None:intergenic 40.0%
TGATTCATAAGCAGCAAGCA+TGG - chr3_4:55424236-55424255 Msa0507810:CDS 40.0%
GTTATTGTTGACATCCCTGC+TGG + chr3_4:55421362-55421381 None:intergenic 45.0%
! GTGTCGATAGCGTTTCAAGA+CGG + chr3_4:55421391-55421410 None:intergenic 45.0%
!! CTTGGAGGATTTTGATGGAG+AGG + chr3_4:55421462-55421481 None:intergenic 45.0%
GAATCTGTCACTACACTTGG+AGG + chr3_4:55421477-55421496 None:intergenic 45.0%
! AACCAGTCACCGGTTAAAGA+AGG - chr3_4:55421545-55421564 Msa0507810:CDS 45.0%
! ACCAGTCACCGGTTAAAGAA+GGG - chr3_4:55421546-55421565 Msa0507810:CDS 45.0%
TTCTTACTCGGACTCACCAA+CGG + chr3_4:55421668-55421687 None:intergenic 45.0%
! AGGTTTAAGACGGAGAGTTG+TGG - chr3_4:55421695-55421714 Msa0507810:CDS 45.0%
GTCTTAGGAACTTTCCTAGG+AGG + chr3_4:55421800-55421819 None:intergenic 45.0%
!!! AGGGTTTTAAATGGAGGTCG+CGG - chr3_4:55422129-55422148 Msa0507810:CDS 45.0%
TGATGCGACGTGAAAATCAG+TGG - chr3_4:55422200-55422219 Msa0507810:CDS 45.0%
GGTAACTAAGCTGTGTGACT+TGG - chr3_4:55422715-55422734 Msa0507810:intron 45.0%
AAGAAGGTCAGAACAATGGG+AGG - chr3_4:55422941-55422960 Msa0507810:intron 45.0%
AGAAGGTCAGAACAATGGGA+GGG - chr3_4:55422942-55422961 Msa0507810:intron 45.0%
TCAAACAAGAACCGGTGTCT+TGG - chr3_4:55422967-55422986 Msa0507810:CDS 45.0%
AGAATTCCATGCCAAGACAC+CGG + chr3_4:55422981-55423000 None:intergenic 45.0%
! GGCATGGAATTCTCGCATTT+TGG - chr3_4:55422988-55423007 Msa0507810:CDS 45.0%
!!! CATTTTGGCTTCAGGAAGCA+GGG - chr3_4:55423003-55423022 Msa0507810:CDS 45.0%
AGGGTTCCAAGCGACTTTAT+TGG - chr3_4:55423052-55423071 Msa0507810:CDS 45.0%
AGCTTGCCAATAAAGTCGCT+TGG + chr3_4:55423061-55423080 None:intergenic 45.0%
!! CCACAAACCTGTCAAGTTGA+AGG + chr3_4:55423187-55423206 None:intergenic 45.0%
CCTTCAACTTGACAGGTTTG+TGG - chr3_4:55423184-55423203 Msa0507810:intron 45.0%
TGAAATGGTCCTGTGATGAC+CGG - chr3_4:55423209-55423228 Msa0507810:intron 45.0%
AAGGAAGCAATTGTGTCTGC+TGG + chr3_4:55423270-55423289 None:intergenic 45.0%
TGCTCTGTAAGCCTCAAAGT+TGG + chr3_4:55423392-55423411 None:intergenic 45.0%
CTGATCGGTGTATTCGTTTC+TGG - chr3_4:55423483-55423502 Msa0507810:intron 45.0%
!! CGTTTCTGGAACACGACAAA+TGG - chr3_4:55423497-55423516 Msa0507810:intron 45.0%
GGTATAGTACTCTCATGCTG+TGG + chr3_4:55423869-55423888 None:intergenic 45.0%
TACCTTGCAATGTCTCCTGA+TGG - chr3_4:55423885-55423904 Msa0507810:CDS 45.0%
TGGACATTTACCTGACCATC+AGG + chr3_4:55423903-55423922 None:intergenic 45.0%
AGACAATAGTGACTGGTGCT+GGG - chr3_4:55424021-55424040 Msa0507810:CDS 45.0%
! CACCTGTAAGCATTGCATTG+TGG - chr3_4:55424087-55424106 Msa0507810:CDS 45.0%
CGATAGCGTTTCAAGACGGA+GGG + chr3_4:55421387-55421406 None:intergenic 50.0%
TCGATAGCGTTTCAAGACGG+AGG + chr3_4:55421388-55421407 None:intergenic 50.0%
!! ATGGAGAGGGTGTTGATGAG+AGG + chr3_4:55421448-55421467 None:intergenic 50.0%
TCCCTTCTTTAACCGGTGAC+TGG + chr3_4:55421550-55421569 None:intergenic 50.0%
TCTCCTTCTTCTTCTCCTGC+AGG - chr3_4:55421626-55421645 Msa0507810:intron 50.0%
CAACCTGCAGGAGAAGAAGA+AGG + chr3_4:55421632-55421651 None:intergenic 50.0%
TCTTCTTCTCCTGCAGGTTG+TGG - chr3_4:55421632-55421651 Msa0507810:intron 50.0%
GGCGAAGAAAAAGGCGAAGA+AGG + chr3_4:55421722-55421741 None:intergenic 50.0%
ACTTTCCTAGGAGGCTTAGG+AGG + chr3_4:55421791-55421810 None:intergenic 50.0%
GGAACTTTCCTAGGAGGCTT+AGG + chr3_4:55421794-55421813 None:intergenic 50.0%
GGCGTCTTAGGAACTTTCCT+AGG + chr3_4:55421803-55421822 None:intergenic 50.0%
! TGTGACTTGGGGCCTTATGA+TGG - chr3_4:55422728-55422747 Msa0507810:intron 50.0%
ATGGTGTCTGTTCTGTCCAG+TGG - chr3_4:55422747-55422766 Msa0507810:intron 50.0%
GAGGGGTCCTTCATATCCAT+TGG - chr3_4:55422776-55422795 Msa0507810:CDS 50.0%
!! GGAGGGCATCAAACAAGAAC+CGG - chr3_4:55422959-55422978 Msa0507810:intron 50.0%
!!! GCATTTTGGCTTCAGGAAGC+AGG - chr3_4:55423002-55423021 Msa0507810:CDS 50.0%
GAAATGGTCCTGTGATGACC+GGG - chr3_4:55423210-55423229 Msa0507810:intron 50.0%
TACCACCAGAAGCAAGTTCC+CGG + chr3_4:55423231-55423250 None:intergenic 50.0%
CTGCTGTGAAAGCCATTGCT+TGG - chr3_4:55423417-55423436 Msa0507810:intron 50.0%
CTGATGAGGTGACCAAGCAA+TGG + chr3_4:55423432-55423451 None:intergenic 50.0%
ACGAGAAGGTTGCTCTGATG+AGG + chr3_4:55423446-55423465 None:intergenic 50.0%
CAGAGCAACCTTCTCGTATC+TGG - chr3_4:55423449-55423468 Msa0507810:intron 50.0%
AGCAACCTTCTCGTATCTGG+AGG - chr3_4:55423452-55423471 Msa0507810:intron 50.0%
AACCTTCTCGTATCTGGAGG+TGG - chr3_4:55423455-55423474 Msa0507810:intron 50.0%
TTCCACCTCCAGATACGAGA+AGG + chr3_4:55423460-55423479 None:intergenic 50.0%
TGCAGGTGTGTAACCTTGCT+TGG - chr3_4:55423633-55423652 Msa0507810:intron 50.0%
GACCATCAGGAGACATTGCA+AGG + chr3_4:55423890-55423909 None:intergenic 50.0%
TGCAATGTCTCCTGATGGTC+AGG - chr3_4:55423890-55423909 Msa0507810:CDS 50.0%
CAGACAATAGTGACTGGTGC+TGG - chr3_4:55424020-55424039 Msa0507810:CDS 50.0%
! GACAATAGTGACTGGTGCTG+GGG - chr3_4:55424022-55424041 Msa0507810:CDS 50.0%
GGCCACAATGCAATGCTTAC+AGG + chr3_4:55424092-55424111 None:intergenic 50.0%
CAGGCCCCAGTTAAAGATAC+AGG - chr3_4:55424182-55424201 Msa0507810:CDS 50.0%
GATACAGGCCTTTGGTCACT+AGG - chr3_4:55424197-55424216 Msa0507810:CDS 50.0%
AGCAGCAAGCATGGAAGATG+AGG - chr3_4:55424245-55424264 Msa0507810:CDS 50.0%
TCAGGTCTAAACCTCCCAGC+AGG - chr3_4:55421344-55421363 Msa0507810:exon 55.0%
CAGGTCTAAACCTCCCAGCA+GGG - chr3_4:55421345-55421364 Msa0507810:exon 55.0%
TTGTTGACATCCCTGCTGGG+AGG + chr3_4:55421358-55421377 None:intergenic 55.0%
TAGCGTTTCAAGACGGAGGG+AGG + chr3_4:55421384-55421403 None:intergenic 55.0%
! GAGAGGTTTGAGATCGCACG+AGG + chr3_4:55421431-55421450 None:intergenic 55.0%
TCTCCTGCAGGTTGTGGTGT+TGG - chr3_4:55421638-55421657 Msa0507810:intron 55.0%
GAACCAACACCACAACCTGC+AGG + chr3_4:55421644-55421663 None:intergenic 55.0%
!! TTGTGGTGTTGGTTCGCCGT+TGG - chr3_4:55421649-55421668 Msa0507810:intron 55.0%
CTACTCCTCCTAAGCCTCCT+AGG - chr3_4:55421783-55421802 Msa0507810:intron 55.0%
AGTTCCTAAGACGCCCCACA+AGG - chr3_4:55421808-55421827 Msa0507810:intron 55.0%
! CTTACCTTGTGGGGCGTCTT+AGG + chr3_4:55421815-55421834 None:intergenic 55.0%
CTGTGTGCAATGCTGTGTGC+AGG - chr3_4:55422485-55422504 Msa0507810:intron 55.0%
GCAATGCTGTGTGCAGGTTC+TGG - chr3_4:55422491-55422510 Msa0507810:CDS 55.0%
CTGTTCTGTCCAGTGGACCA+AGG - chr3_4:55422754-55422773 Msa0507810:intron 55.0%
TTCTGTCCAGTGGACCAAGG+AGG - chr3_4:55422757-55422776 Msa0507810:intron 55.0%
TCTGTCCAGTGGACCAAGGA+GGG - chr3_4:55422758-55422777 Msa0507810:intron 55.0%
GGATATGAAGGACCCCTCCT+TGG + chr3_4:55422774-55422793 None:intergenic 55.0%
CAAGAACCGGTGTCTTGGCA+TGG - chr3_4:55422972-55422991 Msa0507810:CDS 55.0%
TGGCTTCAGGAAGCAGGGAT+AGG - chr3_4:55423008-55423027 Msa0507810:CDS 55.0%
AGCAAGTTCCCGGTCATCAC+AGG + chr3_4:55423221-55423240 None:intergenic 55.0%
! GATGACCGGGAACTTGCTTC+TGG - chr3_4:55423223-55423242 Msa0507810:intron 55.0%
CTGGAGGTGGAACTGCTGAT+CGG - chr3_4:55423468-55423487 Msa0507810:intron 55.0%
CTCTGTTGACACTGGAAGCC+AGG - chr3_4:55423532-55423551 Msa0507810:intron 55.0%
! GGGATGAGACTCTGCGGTTT+TGG - chr3_4:55424042-55424061 Msa0507810:CDS 55.0%
ACGAGGCGAAGCGGAAGAAG+GGG + chr3_4:55421414-55421433 None:intergenic 60.0%
CACGAGGCGAAGCGGAAGAA+GGG + chr3_4:55421415-55421434 None:intergenic 60.0%
TGAGATCGCACGAGGCGAAG+CGG + chr3_4:55421423-55421442 None:intergenic 60.0%
CTGTCCAGTGGACCAAGGAG+GGG - chr3_4:55422759-55422778 Msa0507810:intron 60.0%
GCTTGTCGGCCACAAATCCG+AGG - chr3_4:55423078-55423097 Msa0507810:intron 60.0%
! GACCGGGAACTTGCTTCTGG+TGG - chr3_4:55423226-55423245 Msa0507810:intron 60.0%
GTGCTGGGGATGAGACTCTG+CGG - chr3_4:55424036-55424055 Msa0507810:CDS 60.0%
CGAGGCGAAGCGGAAGAAGG+GGG + chr3_4:55421413-55421432 None:intergenic 65.0%
GCACGAGGCGAAGCGGAAGA+AGG + chr3_4:55421416-55421435 None:intergenic 65.0%
AGGACCCCTCCTTGGTCCAC+TGG + chr3_4:55422766-55422785 None:intergenic 65.0%
GGGTGCGGCCTAGTGACCAA+AGG + chr3_4:55424208-55424227 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 55421154 55424436 55421154 ID=Msa0507810;Name=Msa0507810
chr3_4 mRNA 55421154 55424436 55421154 ID=Msa0507810-mRNA-1;Parent=Msa0507810;Name=Msa0507810-mRNA-1;_AED=0.15;_eAED=0.15;_QI=166|1|1|1|1|1|10|198|487
chr3_4 exon 55421154 55421405 55421154 ID=Msa0507810-mRNA-1:exon:12315;Parent=Msa0507810-mRNA-1
chr3_4 exon 55421499 55421567 55421499 ID=Msa0507810-mRNA-1:exon:12314;Parent=Msa0507810-mRNA-1
chr3_4 exon 55421679 55421741 55421679 ID=Msa0507810-mRNA-1:exon:12313;Parent=Msa0507810-mRNA-1
chr3_4 exon 55421851 55421952 55421851 ID=Msa0507810-mRNA-1:exon:12312;Parent=Msa0507810-mRNA-1
chr3_4 exon 55422037 55422231 55422037 ID=Msa0507810-mRNA-1:exon:12311;Parent=Msa0507810-mRNA-1
chr3_4 exon 55422329 55422391 55422329 ID=Msa0507810-mRNA-1:exon:12310;Parent=Msa0507810-mRNA-1
chr3_4 exon 55422491 55422670 55422491 ID=Msa0507810-mRNA-1:exon:12309;Parent=Msa0507810-mRNA-1
chr3_4 exon 55422770 55422874 55422770 ID=Msa0507810-mRNA-1:exon:12308;Parent=Msa0507810-mRNA-1
chr3_4 exon 55422961 55423083 55422961 ID=Msa0507810-mRNA-1:exon:12307;Parent=Msa0507810-mRNA-1
chr3_4 exon 55423761 55424436 55423761 ID=Msa0507810-mRNA-1:exon:12306;Parent=Msa0507810-mRNA-1
chr3_4 five_prime_UTR 55424271 55424436 55424271 ID=Msa0507810-mRNA-1:five_prime_utr;Parent=Msa0507810-mRNA-1
chr3_4 CDS 55423761 55424270 55423761 ID=Msa0507810-mRNA-1:cds;Parent=Msa0507810-mRNA-1
chr3_4 CDS 55422961 55423083 55422961 ID=Msa0507810-mRNA-1:cds;Parent=Msa0507810-mRNA-1
chr3_4 CDS 55422770 55422874 55422770 ID=Msa0507810-mRNA-1:cds;Parent=Msa0507810-mRNA-1
chr3_4 CDS 55422491 55422670 55422491 ID=Msa0507810-mRNA-1:cds;Parent=Msa0507810-mRNA-1
chr3_4 CDS 55422329 55422391 55422329 ID=Msa0507810-mRNA-1:cds;Parent=Msa0507810-mRNA-1
chr3_4 CDS 55422037 55422231 55422037 ID=Msa0507810-mRNA-1:cds;Parent=Msa0507810-mRNA-1
chr3_4 CDS 55421851 55421952 55421851 ID=Msa0507810-mRNA-1:cds;Parent=Msa0507810-mRNA-1
chr3_4 CDS 55421679 55421741 55421679 ID=Msa0507810-mRNA-1:cds;Parent=Msa0507810-mRNA-1
chr3_4 CDS 55421499 55421567 55421499 ID=Msa0507810-mRNA-1:cds;Parent=Msa0507810-mRNA-1
chr3_4 CDS 55421352 55421405 55421352 ID=Msa0507810-mRNA-1:cds;Parent=Msa0507810-mRNA-1
chr3_4 three_prime_UTR 55421154 55421351 55421154 ID=Msa0507810-mRNA-1:three_prime_utr;Parent=Msa0507810-mRNA-1
Gene Sequence

>Msa0507810

ATGGAGTCACCACAAGCAAAAAAATCAGGTCTAAACCTCCCAGCAGGGATGTCAACAATAACCTCCCTCCGTCTTGAAACGCTATCGACACCCCCTTCTTCCGCTTCGCCTCGTGCGATCTCAAACCTCTCATCAACACCCTCTCCATCAAAATCCTCCAAGTGTAGTGACAGATTCATACCTTGCAGATCATCTTCAAGACTGCATACATTCGGATTAATCGATAACCAGTCACCGGTTAAAGAAGGGAGTAATGAGGCTTATAATAGGTTGTTGAAATCTGAACTTTTTGGACCTGATTTTGCTTCTCCTTCTTCTTCTCCTGCAGGTTGTGGTGTTGGTTCGCCGTTGGTGAGTCCGAGTAAGAATATGTTGAGGTTTAAGACGGAGAGTTGTGGACCTTCTTCGCCTTTTTCTTCGCCTTCGATATTTGGAAGAAATGATGGGTTTTGTAATGAGGGTTCTACTCCTCCTAAGCCTCCTAGGAAAGTTCCTAAGACGCCCCACAAGGTTCTGGATGCTCCTTCACTTCAAGATGACTTTTACTTGAATCTTGTGGATTGGTCCTCACAAAATACTCTAGCAGTTGGACTTGGCACTTGTGTTTATCTCTGGAGTGCTTCAAACAGCAAAGTAACTAAGCTGTGTGACTTGGGGCCTTATGATGGTGTCTGTTCTGTCCAGTGGACCAAGGAGGGGTCCTTCATATCCATTGGTACAAATGGTGGTCAAGTTCAGATTTGGGATGGTACTAAATGCAAGAAGGTCAGAACAATGGGAGGGCATCAAACAAGAACCGGTGTCTTGGCATGGAATTCTCGCATTTTGGCTTCAGGAAGCAGGGATAGGAACATACTTCAGCATGACATGAGGGTTCCAAGCGACTTTATTGGCAAGCTTGTCGGCCACAAATCCGAGGTTTGTGGATTGAAATGGTCCTGTGATGACCGGGAACTTGCTTCTGGTGGTAATGATAATCAGCTATTGGTATGGAATCAGCACTCTCAACAACCAACTTTGAGGCTTACAGAGCACACTGCTGCTGTGAAAGCCATTGCTTGGTCACCTCATCAGAGCAACCTTCTCGTATCTGGAGGTGGAACTGCTGATCGGTGTATTCGTTTCTGGAACACGACAAATGGCCACCAATTGAACTCTGTTGACACTGGAAGCCAGGTGTGTAACCTTGCTTGGAGTAAAAATGTAAATGAGCTAGTGAGTACACATGGTTACTCACAAAATCAAATCATGGTGTGGAAATATCCATCACTAGCAAAGGTTGCAACTCTAACTGGCCACAGCATGAGAGTACTATACCTTGCAATGTCTCCTGATGGTCAGACAATAGTGACTGGTGCTGGGGATGAGACTCTGCGGTTTTGGAATGTTTTCCCATCAATGAAAACACCTGCCCCAGTTAAAGATACAGGCCTTTGGTCACTAGGCCGCACCCAAATCAGATGA

Protein sequence

>Msa0507810

MESPQAKKSGLNLPAGMSTITSLRLETLSTPPSSASPRAISNLSSTPSPSKSSKCSDRFIPCRSSSRLHTFGLIDNQSPVKEGSNEAYNRLLKSELFGPDFASPSSSPAGCGVGSPLVSPSKNMLRFKTESCGPSSPFSSPSIFGRNDGFCNEGSTPPKPPRKVPKTPHKVLDAPSLQDDFYLNLVDWSSQNTLAVGLGTCVYLWSASNSKVTKLCDLGPYDGVCSVQWTKEGSFISIGTNGGQVQIWDGTKCKKVRTMGGHQTRTGVLAWNSRILASGSRDRNILQHDMRVPSDFIGKLVGHKSEVCGLKWSCDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSNLLVSGGGTADRCIRFWNTTNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSLAKVATLTGHSMRVLYLAMSPDGQTIVTGAGDETLRFWNVFPSMKTPAPVKDTGLWSLGRTQIR*