Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0871620 | XP_013450947.1 | 97.491 | 279 | 7 | 0 | 1 | 279 | 1 | 279 | 0.0 | 567 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0871620 | sp|Q8LGJ5|PCO2_ARATH | 58.741 | 286 | 100 | 5 | 1 | 278 | 1 | 276 | 3.07e-115 | 335 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0007810 | Msa0871620 | -0.837260 | 5.772387e-57 | -8.615850e-47 |
Msa0011060 | Msa0871620 | -0.812019 | 5.233712e-51 | -8.615850e-47 |
Msa0011100 | Msa0871620 | -0.821997 | 2.997341e-53 | -8.615850e-47 |
Msa0017710 | Msa0871620 | 0.804571 | 2.026519e-49 | -8.615850e-47 |
Msa0049670 | Msa0871620 | -0.808489 | 3.020962e-50 | -8.615850e-47 |
Msa0056220 | Msa0871620 | -0.808210 | 3.463810e-50 | -8.615850e-47 |
Msa0056230 | Msa0871620 | -0.842081 | 3.213855e-58 | -8.615850e-47 |
Msa0079320 | Msa0871620 | -0.822927 | 1.822552e-53 | -8.615850e-47 |
Msa0091300 | Msa0871620 | -0.806118 | 9.605816e-50 | -8.615850e-47 |
Msa0108500 | Msa0871620 | -0.802035 | 6.789075e-49 | -8.615850e-47 |
Msa0111000 | Msa0871620 | -0.811508 | 6.759739e-51 | -8.615850e-47 |
Msa0625550 | Msa0871620 | -0.809501 | 1.833917e-50 | -8.615850e-47 |
Msa0646180 | Msa0871620 | -0.811018 | 8.633383e-51 | -8.615850e-47 |
Msa0654400 | Msa0871620 | -0.807000 | 6.259889e-50 | -8.615850e-47 |
Msa0654500 | Msa0871620 | -0.811040 | 8.539244e-51 | -8.615850e-47 |
Msa0654570 | Msa0871620 | -0.800442 | 1.438623e-48 | -8.615850e-47 |
Msa0685390 | Msa0871620 | -0.831862 | 1.312195e-55 | -8.615850e-47 |
Msa0690100 | Msa0871620 | -0.800101 | 1.688153e-48 | -8.615850e-47 |
Msa0694170 | Msa0871620 | -0.808356 | 3.224093e-50 | -8.615850e-47 |
Msa0706700 | Msa0871620 | -0.822315 | 2.530086e-53 | -8.615850e-47 |
Msa0708840 | Msa0871620 | -0.834274 | 3.295696e-56 | -8.615850e-47 |
Msa0714230 | Msa0871620 | -0.811201 | 7.880107e-51 | -8.615850e-47 |
Msa0722660 | Msa0871620 | -0.808082 | 3.688080e-50 | -8.615850e-47 |
Msa0730250 | Msa0871620 | -0.811771 | 5.925813e-51 | -8.615850e-47 |
Msa0742370 | Msa0871620 | -0.804349 | 2.254701e-49 | -8.615850e-47 |
Msa0742690 | Msa0871620 | -0.813064 | 3.091802e-51 | -8.615850e-47 |
Msa0745630 | Msa0871620 | -0.805258 | 1.456041e-49 | -8.615850e-47 |
Msa0760160 | Msa0871620 | -0.804023 | 2.635881e-49 | -8.615850e-47 |
Msa0770540 | Msa0871620 | -0.805468 | 1.315960e-49 | -8.615850e-47 |
Msa0779450 | Msa0871620 | -0.802127 | 6.501195e-49 | -8.615850e-47 |
Msa0779830 | Msa0871620 | -0.803423 | 3.511000e-49 | -8.615850e-47 |
Msa0786600 | Msa0871620 | -0.806903 | 6.562669e-50 | -8.615850e-47 |
Msa0792410 | Msa0871620 | 0.807578 | 4.720012e-50 | -8.615850e-47 |
Msa0795910 | Msa0871620 | -0.800814 | 1.207733e-48 | -8.615850e-47 |
Msa0801320 | Msa0871620 | -0.833123 | 6.391069e-56 | -8.615850e-47 |
Msa0801630 | Msa0871620 | -0.820442 | 6.844087e-53 | -8.615850e-47 |
Msa0812020 | Msa0871620 | -0.805812 | 1.114027e-49 | -8.615850e-47 |
Msa0827560 | Msa0871620 | -0.803291 | 3.739594e-49 | -8.615850e-47 |
Msa0829250 | Msa0871620 | -0.803306 | 3.712743e-49 | -8.615850e-47 |
Msa0829770 | Msa0871620 | -0.810559 | 1.085314e-50 | -8.615850e-47 |
Msa0172110 | Msa0871620 | -0.814388 | 1.580309e-51 | -8.615850e-47 |
Msa0183310 | Msa0871620 | -0.803942 | 2.739942e-49 | -8.615850e-47 |
Msa0183960 | Msa0871620 | -0.819032 | 1.437129e-52 | -8.615850e-47 |
Msa0186400 | Msa0871620 | -0.803672 | 3.117421e-49 | -8.615850e-47 |
Msa0190470 | Msa0871620 | -0.802659 | 5.051729e-49 | -8.615850e-47 |
Msa0221460 | Msa0871620 | -0.801373 | 9.286102e-49 | -8.615850e-47 |
Msa0223500 | Msa0871620 | -0.831415 | 1.691216e-55 | -8.615850e-47 |
Msa0227790 | Msa0871620 | 0.812987 | 3.214707e-51 | -8.615850e-47 |
Msa0228360 | Msa0871620 | -0.803607 | 3.215924e-49 | -8.615850e-47 |
Msa0229750 | Msa0871620 | -0.800099 | 1.689149e-48 | -8.615850e-47 |
Msa0232660 | Msa0871620 | -0.810383 | 1.184622e-50 | -8.615850e-47 |
Msa0371350 | Msa0871620 | -0.807815 | 4.203247e-50 | -8.615850e-47 |
Msa0375930 | Msa0871620 | -0.810411 | 1.167953e-50 | -8.615850e-47 |
Msa0382060 | Msa0871620 | -0.815932 | 7.174277e-52 | -8.615850e-47 |
Msa0384590 | Msa0871620 | 0.818387 | 2.013217e-52 | -8.615850e-47 |
Msa0385280 | Msa0871620 | -0.805864 | 1.086489e-49 | -8.615850e-47 |
Msa0387740 | Msa0871620 | -0.800451 | 1.432685e-48 | -8.615850e-47 |
Msa0390590 | Msa0871620 | -0.802030 | 6.806675e-49 | -8.615850e-47 |
Msa0424570 | Msa0871620 | -0.810744 | 9.899807e-51 | -8.615850e-47 |
Msa0434660 | Msa0871620 | 0.801853 | 7.403010e-49 | -8.615850e-47 |
Msa0436610 | Msa0871620 | -0.800560 | 1.361109e-48 | -8.615850e-47 |
Msa0438680 | Msa0871620 | -0.816552 | 5.214790e-52 | -8.615850e-47 |
Msa0450890 | Msa0871620 | -0.814494 | 1.496971e-51 | -8.615850e-47 |
Msa0264580 | Msa0871620 | -0.841040 | 6.047125e-58 | -8.615850e-47 |
Msa0267450 | Msa0871620 | -0.800733 | 1.254956e-48 | -8.615850e-47 |
Msa0267510 | Msa0871620 | -0.801725 | 7.862075e-49 | -8.615850e-47 |
Msa0269220 | Msa0871620 | -0.825004 | 5.936233e-54 | -8.615850e-47 |
Msa0269660 | Msa0871620 | -0.800831 | 1.198331e-48 | -8.615850e-47 |
Msa0294200 | Msa0871620 | 0.833181 | 6.179924e-56 | -8.615850e-47 |
Msa0295030 | Msa0871620 | -0.832237 | 1.059842e-55 | -8.615850e-47 |
Msa0307630 | Msa0871620 | 0.805968 | 1.033015e-49 | -8.615850e-47 |
Msa0337760 | Msa0871620 | -0.800512 | 1.391797e-48 | -8.615850e-47 |
Msa0339970 | Msa0871620 | -0.841916 | 3.553401e-58 | -8.615850e-47 |
Msa0483160 | Msa0871620 | -0.800206 | 1.606543e-48 | -8.615850e-47 |
Msa0502900 | Msa0871620 | -0.807416 | 5.110181e-50 | -8.615850e-47 |
Msa0516000 | Msa0871620 | -0.811824 | 5.771935e-51 | -8.615850e-47 |
Msa0522540 | Msa0871620 | 0.810094 | 1.367603e-50 | -8.615850e-47 |
Msa0523140 | Msa0871620 | -0.801547 | 8.552723e-49 | -8.615850e-47 |
Msa0526150 | Msa0871620 | 0.815901 | 7.288191e-52 | -8.615850e-47 |
Msa0526520 | Msa0871620 | -0.813679 | 2.265509e-51 | -8.615850e-47 |
Msa0550980 | Msa0871620 | -0.803680 | 3.105625e-49 | -8.615850e-47 |
Msa0559440 | Msa0871620 | -0.815054 | 1.125000e-51 | -8.615850e-47 |
Msa0559640 | Msa0871620 | -0.815077 | 1.112039e-51 | -8.615850e-47 |
Msa0571900 | Msa0871620 | -0.804040 | 2.614054e-49 | -8.615850e-47 |
Msa0575960 | Msa0871620 | -0.800249 | 1.574641e-48 | -8.615850e-47 |
Msa0577960 | Msa0871620 | -0.806344 | 8.610937e-50 | -8.615850e-47 |
Msa0580410 | Msa0871620 | -0.802801 | 4.722006e-49 | -8.615850e-47 |
Msa0866510 | Msa0871620 | -0.806514 | 7.928614e-50 | -8.615850e-47 |
Msa0869320 | Msa0871620 | -0.812346 | 4.439349e-51 | -8.615850e-47 |
Msa0871620 | Msa0904940 | 0.904453 | 1.208516e-79 | -8.615850e-47 |
Msa0871620 | Msa0934290 | -0.812885 | 3.383873e-51 | -8.615850e-47 |
Msa0871620 | Msa0936950 | 0.943037 | 2.471567e-102 | -8.615850e-47 |
Msa0871620 | Msa0956600 | -0.803371 | 3.598569e-49 | -8.615850e-47 |
Msa0871620 | Msa0971780 | -0.817650 | 2.953922e-52 | -8.615850e-47 |
Msa0871620 | Msa0974250 | 0.945515 | 2.644856e-104 | -8.615850e-47 |
Msa0871620 | Msa1011140 | -0.808858 | 2.519416e-50 | -8.615850e-47 |
Msa0871620 | Msa1017610 | -0.810615 | 1.055576e-50 | -8.615850e-47 |
Msa0871620 | Msa1039150 | -0.815446 | 9.206735e-52 | -8.615850e-47 |
Msa0871620 | Msa1039440 | -0.802641 | 5.094980e-49 | -8.615850e-47 |
Msa0871620 | Msa1042420 | -0.806756 | 7.049280e-50 | -8.615850e-47 |
Msa0871620 | Msa1057940 | -0.803845 | 2.869410e-49 | -8.615850e-47 |
Msa0871620 | Msa1065090 | -0.808961 | 2.394178e-50 | -8.615850e-47 |
Msa0871620 | Msa1078210 | -0.800449 | 1.433532e-48 | -8.615850e-47 |
Msa0871620 | Msa1078590 | -0.831521 | 1.592768e-55 | -8.615850e-47 |
Msa0871620 | Msa1078760 | -0.828711 | 7.724113e-55 | -8.615850e-47 |
Msa0871620 | Msa1083660 | -0.804632 | 1.967900e-49 | -8.615850e-47 |
Msa0871620 | Msa1088400 | -0.804067 | 2.581169e-49 | -8.615850e-47 |
Msa0871620 | Msa1088740 | -0.806820 | 6.832377e-50 | -8.615850e-47 |
Msa0871620 | Msa1094810 | 0.824085 | 9.770236e-54 | -8.615850e-47 |
Msa0871620 | Msa1104020 | -0.812289 | 4.570375e-51 | -8.615850e-47 |
Msa0871620 | Msa1108960 | 0.800359 | 1.495812e-48 | -8.615850e-47 |
Msa0871620 | Msa1112230 | -0.805240 | 1.468901e-49 | -8.615850e-47 |
Msa0871620 | Msa1123440 | -0.801553 | 8.529605e-49 | -8.615850e-47 |
Msa0871620 | Msa1129120 | -0.816170 | 6.349208e-52 | -8.615850e-47 |
Msa0871620 | Msa1130860 | -0.802312 | 5.955137e-49 | -8.615850e-47 |
Msa0871620 | Msa1130920 | -0.802611 | 5.168656e-49 | -8.615850e-47 |
Msa0871620 | Msa1132880 | -0.800286 | 1.547918e-48 | -8.615850e-47 |
Msa0871620 | Msa1146980 | 0.815088 | 1.105614e-51 | -8.615850e-47 |
Msa0871620 | Msa1169590 | -0.841153 | 5.646372e-58 | -8.615850e-47 |
Msa0871620 | Msa1182530 | -0.830447 | 2.921675e-55 | -8.615850e-47 |
Msa0871620 | Msa1199540 | -0.820238 | 7.621613e-53 | -8.615850e-47 |
Msa0871620 | Msa1212210 | -0.806350 | 8.584661e-50 | -8.615850e-47 |
Msa0871620 | Msa1219530 | -0.818253 | 2.158235e-52 | -8.615850e-47 |
Msa0871620 | Msa1240240 | -0.807082 | 6.013990e-50 | -8.615850e-47 |
Msa0871620 | Msa1257960 | -0.806440 | 8.216627e-50 | -8.615850e-47 |
Msa0871620 | Msa1260520 | -0.805762 | 1.141509e-49 | -8.615850e-47 |
Msa0871620 | Msa1266120 | -0.800580 | 1.348070e-48 | -8.615850e-47 |
Msa0871620 | Msa1279200 | -0.816977 | 4.186388e-52 | -8.615850e-47 |
Msa0871620 | Msa1298980 | -0.812509 | 4.090672e-51 | -8.615850e-47 |
Msa0871620 | Msa1300370 | -0.800573 | 1.352861e-48 | -8.615850e-47 |
Msa0871620 | Msa1302630 | 0.801817 | 7.529258e-49 | -8.615850e-47 |
Msa0871620 | Msa1307110 | -0.812652 | 3.805613e-51 | -8.615850e-47 |
Msa0871620 | Msa1328680 | -0.813708 | 2.232908e-51 | -8.615850e-47 |
Msa0871620 | Msa1332340 | -0.800774 | 1.230903e-48 | -8.615850e-47 |
Msa0871620 | Msa1333220 | -0.817474 | 3.236987e-52 | -8.615850e-47 |
Msa0871620 | Msa1342560 | 0.827714 | 1.343114e-54 | -8.615850e-47 |
Msa0871620 | Msa1352600 | -0.808194 | 3.491332e-50 | -8.615850e-47 |
Msa0871620 | Msa1359880 | -0.807373 | 5.217266e-50 | -8.615850e-47 |
Msa0871620 | Msa1360070 | -0.803892 | 2.806795e-49 | -8.615850e-47 |
Msa0871620 | Msa1363310 | -0.814187 | 1.750913e-51 | -8.615850e-47 |
Msa0871620 | Msa1366140 | -0.811107 | 8.259486e-51 | -8.615850e-47 |
Msa0871620 | Msa1371260 | -0.828720 | 7.686345e-55 | -8.615850e-47 |
Msa0871620 | Msa1373310 | -0.803307 | 3.710066e-49 | -8.615850e-47 |
Msa0871620 | Msa1374210 | -0.802871 | 4.566294e-49 | -8.615850e-47 |
Msa0871620 | Msa1381300 | -0.815358 | 9.631995e-52 | -8.615850e-47 |
Msa0871620 | Msa1382100 | -0.800176 | 1.629460e-48 | -8.615850e-47 |
Msa0871620 | Msa1386580 | -0.815051 | 1.127175e-51 | -8.615850e-47 |
Msa0871620 | Msa1387450 | -0.819530 | 1.106332e-52 | -8.615850e-47 |
Msa0871620 | Msa1388720 | -0.816111 | 6.545619e-52 | -8.615850e-47 |
Msa0871620 | Msa1409360 | -0.818018 | 2.439889e-52 | -8.615850e-47 |
Msa0871620 | Msa1422820 | -0.806300 | 8.795241e-50 | -8.615850e-47 |
Msa0871620 | Msa1428230 | -0.806165 | 9.391269e-50 | -8.615850e-47 |
Msa0871620 | Msa1429810 | 0.802114 | 6.542584e-49 | -8.615850e-47 |
Msa0871620 | Msa1432730 | -0.808442 | 3.090561e-50 | -8.615850e-47 |
Msa0871620 | Msa1433060 | -0.803216 | 3.874431e-49 | -8.615850e-47 |
Msa0871620 | Msa1438410 | -0.820581 | 6.358560e-53 | -8.615850e-47 |
Msa0871620 | Msa1450710 | 0.800220 | 1.596158e-48 | -8.615850e-47 |
Msa0871620 | Msa1451200 | -0.806675 | 7.331119e-50 | -8.615850e-47 |
Msa0871620 | Msa1462610 | 0.808276 | 3.352782e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0871620 | MtrunA17_Chr6g0452941 | 97.491 | 279 | 7 | 0 | 1 | 279 | 1 | 279 | 0.0 | 567 |
Msa0871620 | MtrunA17_Chr7g0216881 | 68.198 | 283 | 81 | 3 | 1 | 279 | 1 | 278 | 4.21e-136 | 385 |
Msa0871620 | MtrunA17_Chr6g0460971 | 47.348 | 264 | 129 | 5 | 20 | 279 | 34 | 291 | 6.90e-78 | 238 |
Msa0871620 | MtrunA17_Chr7g0253891 | 48.855 | 262 | 123 | 7 | 20 | 276 | 23 | 278 | 8.78e-78 | 237 |
Msa0871620 | MtrunA17_Chr2g0307681 | 44.656 | 262 | 123 | 7 | 29 | 276 | 16 | 269 | 6.20e-66 | 207 |
Msa0871620 | MtrunA17_Chr2g0320221 | 41.767 | 249 | 115 | 7 | 41 | 276 | 5 | 236 | 1.80e-62 | 197 |
Msa0871620 | MtrunA17_Chr4g0041281 | 42.400 | 250 | 113 | 8 | 41 | 276 | 5 | 237 | 3.88e-61 | 193 |
Msa0871620 | MtrunA17_Chr2g0283961 | 39.608 | 255 | 123 | 9 | 38 | 276 | 1 | 240 | 3.46e-57 | 183 |
Msa0871620 | MtrunA17_Chr5g0426531 | 39.370 | 254 | 117 | 5 | 37 | 277 | 2 | 231 | 7.23e-50 | 165 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0871620 | AT5G39890.1 | 58.741 | 286 | 100 | 5 | 1 | 278 | 1 | 276 | 3.12e-116 | 335 |
Msa0871620 | AT5G39890.2 | 60.494 | 243 | 81 | 4 | 1 | 237 | 1 | 234 | 1.37e-100 | 294 |
Msa0871620 | AT5G15120.1 | 58.848 | 243 | 84 | 4 | 41 | 276 | 58 | 291 | 6.23e-99 | 292 |
Msa0871620 | AT1G18490.1 | 43.369 | 279 | 128 | 10 | 20 | 276 | 10 | 280 | 8.13e-64 | 202 |
Msa0871620 | AT2G42670.1 | 43.089 | 246 | 119 | 6 | 41 | 276 | 5 | 239 | 3.16e-63 | 199 |
Msa0871620 | AT2G42670.2 | 43.725 | 247 | 117 | 7 | 41 | 276 | 5 | 240 | 1.20e-62 | 197 |
Msa0871620 | AT3G58670.2 | 41.870 | 246 | 123 | 5 | 41 | 276 | 5 | 240 | 5.74e-61 | 193 |
Msa0871620 | AT3G58670.3 | 41.870 | 246 | 123 | 5 | 41 | 276 | 5 | 240 | 5.74e-61 | 193 |
Msa0871620 | AT3G58670.1 | 41.870 | 246 | 123 | 5 | 41 | 276 | 5 | 240 | 5.74e-61 | 193 |
Msa0871620 | AT3G58670.4 | 44.086 | 186 | 98 | 2 | 91 | 276 | 18 | 197 | 1.04e-51 | 168 |
Msa0871620 | AT2G42670.3 | 46.341 | 164 | 80 | 3 | 114 | 276 | 16 | 172 | 3.78e-44 | 148 |
Find 80 sgRNAs with CRISPR-Local
Find 276 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATCCTAATATGCCATATTTC+AGG | 0.174666 | 6_1:+6505817 | Msa0871620:CDS |
CTTCATGGAACAACAGAAAA+AGG | 0.196642 | 6_1:+6508035 | Msa0871620:three_prime_UTR |
TAAACATTCCTTTCCTCTTC+TGG | 0.218650 | 6_1:-6507749 | None:intergenic |
TTGAAAATGGTAGGAGATTC+AGG | 0.242628 | 6_1:-6506392 | None:intergenic |
TGTGCAGTTCTTGATGTTCT+TGG | 0.289175 | 6_1:+6507000 | Msa0871620:CDS |
GGATCCAAGTCAACATCTTC+TGG | 0.300517 | 6_1:-6505798 | None:intergenic |
ATAACAAACTTCTATATTGA+TGG | 0.307799 | 6_1:-6508096 | None:intergenic |
TCCTCAGGATATAAGATAGA+AGG | 0.318843 | 6_1:-6506940 | None:intergenic |
ACTTTCTGAGGGTTTGAAAA+TGG | 0.319904 | 6_1:-6506405 | None:intergenic |
GCCCTGAAATATGGCATATT+AGG | 0.323972 | 6_1:-6505819 | None:intergenic |
CTGTTAGTAATTGTTTCCTT+TGG | 0.343483 | 6_1:-6503970 | None:intergenic |
TGCACATCAAATCATATGAT+TGG | 0.370445 | 6_1:+6506354 | Msa0871620:CDS |
CTTGAAGATTTAAAAGTTGA+AGG | 0.376544 | 6_1:+6507797 | Msa0871620:CDS |
TGCTAACTCTCCACAATAGT+TGG | 0.397487 | 6_1:-6507836 | None:intergenic |
GATGCATTAGCCCTGAAATA+TGG | 0.408982 | 6_1:-6505828 | None:intergenic |
CCTCCATATTCTGATCTTGA+TGG | 0.415771 | 6_1:+6507024 | Msa0871620:CDS |
ATTCCTTTCCTCTTCTGGTA+TGG | 0.419126 | 6_1:-6507744 | None:intergenic |
GTTGAGAGAGAGAAAACAGT+TGG | 0.431199 | 6_1:-6503278 | None:intergenic |
GTCTTTGCTTCTAGTGGGAC+AGG | 0.438771 | 6_1:+6504066 | Msa0871620:CDS |
TCTGTTGTTCCATGAAGAAA+AGG | 0.441499 | 6_1:-6508029 | None:intergenic |
CTGCCATCAAGATCAGAATA+TGG | 0.460746 | 6_1:-6507027 | None:intergenic |
TTATGAGTGTGAGAAATTCT+CGG | 0.469187 | 6_1:+6505884 | Msa0871620:CDS |
TTACCTGGAAAGTTGGAAAA+CGG | 0.476609 | 6_1:-6507075 | None:intergenic |
TTTCAGTTGGTGAACAAAGT+TGG | 0.478573 | 6_1:+6503871 | Msa0871620:intron |
GCACATCAAATCATATGATT+GGG | 0.481019 | 6_1:+6506355 | Msa0871620:CDS |
GGAAGAAGTAGCAAAGAAGA+AGG | 0.482084 | 6_1:-6503306 | None:intergenic |
GTGAAGGTTGGTGAAGATTG+AGG | 0.482525 | 6_1:-6503350 | None:intergenic |
AGAACCTTAGCTGATAGAAA+AGG | 0.486526 | 6_1:+6503928 | Msa0871620:CDS |
GCATCTTCTTCTGACGCCGC+CGG | 0.489872 | 6_1:-6504008 | None:intergenic |
ATTGACATTTGATATAAAAG+AGG | 0.492060 | 6_1:-6503327 | None:intergenic |
TTATGAATGGCTACAAGAAA+AGG | 0.495196 | 6_1:+6507769 | Msa0871620:CDS |
GAAGAAGTAGCAAAGAAGAA+GGG | 0.495863 | 6_1:-6503305 | None:intergenic |
TCCTAATATGCCATATTTCA+GGG | 0.497378 | 6_1:+6505818 | Msa0871620:CDS |
AAGGAAGTCTTTGCTTCTAG+TGG | 0.500710 | 6_1:+6504060 | Msa0871620:CDS |
CAAAGAGAAGTCAGAAAACC+AGG | 0.501782 | 6_1:-6503249 | None:intergenic |
AGGAAAGGAATGTTTATGAA+TGG | 0.504362 | 6_1:+6507756 | Msa0871620:CDS |
TGCAAGTTGCCACCATCCTC+AGG | 0.504973 | 6_1:-6506955 | None:intergenic |
GAAAGAGAAATAGTGAAGGT+TGG | 0.505968 | 6_1:-6503362 | None:intergenic |
ACAGCAGGTCAAGGAGGAAC+CGG | 0.506872 | 6_1:+6503989 | Msa0871620:CDS |
AGGAATTGTCCCACCAGCTC+AGG | 0.513462 | 6_1:+6504086 | Msa0871620:CDS |
GAATATCAAAACTTAGCCCC+TGG | 0.518117 | 6_1:+6503231 | None:intergenic |
AACTTATCAATGTCCTGAGC+TGG | 0.532617 | 6_1:-6504099 | None:intergenic |
TAAGTACTACTCACTTTCTG+AGG | 0.535516 | 6_1:-6506417 | None:intergenic |
TCTATCTTATATCCTGAGGA+TGG | 0.553467 | 6_1:+6506943 | Msa0871620:CDS |
ATGTTGCAGGTCCTGAGTTG+AGG | 0.553715 | 6_1:+6506872 | Msa0871620:intron |
TCTGAGGGTTTGAAAATGGT+AGG | 0.554115 | 6_1:-6506401 | None:intergenic |
AAGAAGTAGCAAAGAAGAAG+GGG | 0.554384 | 6_1:-6503304 | None:intergenic |
TTATCAATGTCCTGAGCTGG+TGG | 0.560783 | 6_1:-6504096 | None:intergenic |
GTACAGTGGTCCAACTATTG+TGG | 0.561786 | 6_1:+6507826 | Msa0871620:CDS |
AGGAAGTCTTTGCTTCTAGT+GGG | 0.564984 | 6_1:+6504061 | Msa0871620:CDS |
AGGAAACAATTACTAACAGC+AGG | 0.568362 | 6_1:+6503974 | Msa0871620:CDS |
CCTCAGGATATAAGATAGAA+GGG | 0.572370 | 6_1:-6506939 | None:intergenic |
AAAACCAGAAGATGTTGACT+TGG | 0.573524 | 6_1:+6505794 | Msa0871620:CDS |
AAGTACTACTCACTTTCTGA+GGG | 0.577095 | 6_1:-6506416 | None:intergenic |
TATAAGATAGAAGGGTTGCA+AGG | 0.578009 | 6_1:-6506931 | None:intergenic |
CTCAGGACATTGATAAGTTG+CGG | 0.580370 | 6_1:+6504103 | Msa0871620:CDS |
GGGCTAATGCATCTCACAGA+AGG | 0.585075 | 6_1:+6505838 | Msa0871620:CDS |
CCCTTCTATCTTATATCCTG+AGG | 0.585726 | 6_1:+6506939 | Msa0871620:CDS |
AGGACTATCCATACCAGAAG+AGG | 0.597067 | 6_1:+6507736 | Msa0871620:CDS |
GGTTGCACAAGTTGTTGTTG+AGG | 0.600572 | 6_1:-6503429 | None:intergenic |
TATCCATACCAGAAGAGGAA+AGG | 0.605568 | 6_1:+6507741 | Msa0871620:CDS |
CATCAAATCATATGATTGGG+TGG | 0.621774 | 6_1:+6506358 | Msa0871620:CDS |
TGTAGAGGAATAACACCAGA+AGG | 0.622496 | 6_1:-6506284 | None:intergenic |
ATCTTATATCCTGAGGATGG+TGG | 0.627492 | 6_1:+6506946 | Msa0871620:CDS |
GTTGAGGTTAGCAAAAGTGA+AGG | 0.633387 | 6_1:+6506888 | Msa0871620:CDS |
CAATTACTAACAGCAGGTCA+AGG | 0.634321 | 6_1:+6503980 | Msa0871620:CDS |
GCGTCAGAAGAAGATGCCGC+CGG | 0.640523 | 6_1:+6504014 | Msa0871620:CDS |
TTTGGAAAGAGAAATAGTGA+AGG | 0.642083 | 6_1:-6503366 | None:intergenic |
ATTCCAGGGTGATTATGTAG+AGG | 0.643712 | 6_1:-6506299 | None:intergenic |
TTGATGGCTAAAATTAAACA+TGG | 0.676097 | 6_1:-6508080 | None:intergenic |
AAAGAGAAGTCAGAAAACCA+GGG | 0.676901 | 6_1:-6503248 | None:intergenic |
TATCAATGTCCTGAGCTGGT+GGG | 0.678123 | 6_1:-6504095 | None:intergenic |
GCAGGTCAAGGAGGAACCGG+CGG | 0.678543 | 6_1:+6503992 | Msa0871620:CDS |
CCATCAAGATCAGAATATGG+AGG | 0.684165 | 6_1:-6507024 | None:intergenic |
ATTCCTCTACATAATCACCC+TGG | 0.691462 | 6_1:+6506296 | Msa0871620:CDS |
AAGAGAAGTCAGAAAACCAG+GGG | 0.695114 | 6_1:-6503247 | None:intergenic |
AGAGGAATAACACCAGAAGG+TGG | 0.695453 | 6_1:-6506281 | None:intergenic |
GTTGAAGGAAGAATGTACAG+TGG | 0.723898 | 6_1:+6507812 | Msa0871620:CDS |
TTACTAACAGCAGGTCAAGG+AGG | 0.728299 | 6_1:+6503983 | Msa0871620:CDS |
AAAATGGTAGGAGATTCAGG+AGG | 0.774453 | 6_1:-6506389 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAATATAAATAATAAGAATG+AGG | - | chr6_1:6503506-6503525 | None:intergenic | 10.0% |
!!! | TTTTATTTTCTCAATTATTT+TGG | + | chr6_1:6504323-6504342 | Msa0871620:intron | 10.0% |
!! | TTCAATGTAAAATATATATT+GGG | - | chr6_1:6505012-6505031 | None:intergenic | 10.0% |
!! | TTTCAATGTAAAATATATAT+TGG | - | chr6_1:6505013-6505032 | None:intergenic | 10.0% |
!! | ATGAAAAATGTTGTAAAATT+TGG | - | chr6_1:6503387-6503406 | None:intergenic | 15.0% |
!!! | TTTTGTTTACATTGTTTTTT+TGG | - | chr6_1:6503474-6503493 | None:intergenic | 15.0% |
!!! | TCTGTTTTTGAATTTTTTAT+GGG | + | chr6_1:6503621-6503640 | Msa0871620:intron | 15.0% |
!!! | TTCAAATTTGAATTGTTTTT+TGG | + | chr6_1:6503655-6503674 | Msa0871620:intron | 15.0% |
!! | AAACTTAATTTATGCTAAAA+GGG | - | chr6_1:6503684-6503703 | None:intergenic | 15.0% |
!! | TAAACTTAATTTATGCTAAA+AGG | - | chr6_1:6503685-6503704 | None:intergenic | 15.0% |
!!! | ATTGTTTTTATGTTGATAAT+TGG | + | chr6_1:6504176-6504195 | Msa0871620:intron | 15.0% |
!!! | TATTGTTATTAATTGTTTTC+AGG | + | chr6_1:6504383-6504402 | Msa0871620:intron | 15.0% |
!!! | ATTGTTATTAATTGTTTTCA+GGG | + | chr6_1:6504384-6504403 | Msa0871620:intron | 15.0% |
!! | AAAATGATAACATCAAAAAT+TGG | - | chr6_1:6504764-6504783 | None:intergenic | 15.0% |
!! | TTTATATATTATATATTCCG+AGG | + | chr6_1:6504927-6504946 | Msa0871620:intron | 15.0% |
!! | ATATGATGTTTATAAGAAAA+CGG | + | chr6_1:6505927-6505946 | Msa0871620:intron | 15.0% |
!!! | ATAGCAATTTTTTCTATTTT+AGG | - | chr6_1:6506542-6506561 | None:intergenic | 15.0% |
!! | CAAAATCATAAAATATACAA+AGG | - | chr6_1:6506582-6506601 | None:intergenic | 15.0% |
!!! | TGAACTATAGTTTTAAATTA+GGG | - | chr6_1:6506800-6506819 | None:intergenic | 15.0% |
!!! | ATGAACTATAGTTTTAAATT+AGG | - | chr6_1:6506801-6506820 | None:intergenic | 15.0% |
!!! | CTTTATTATTGTACTTTTTT+TGG | + | chr6_1:6507991-6508010 | Msa0871620:three_prime_UTR | 15.0% |
!! | ATTGACATTTGATATAAAAG+AGG | - | chr6_1:6503330-6503349 | None:intergenic | 20.0% |
!! | CATAAAAAATTCAAAAACAG+AGG | - | chr6_1:6503622-6503641 | None:intergenic | 20.0% |
!!! | CTCTGTTTTTGAATTTTTTA+TGG | + | chr6_1:6503620-6503639 | Msa0871620:intron | 20.0% |
!!! | CTGTTTTTGAATTTTTTATG+GGG | + | chr6_1:6503622-6503641 | Msa0871620:intron | 20.0% |
!! | CATAAAAATTATCAAAACAG+AGG | - | chr6_1:6503776-6503795 | None:intergenic | 20.0% |
!!! | CTGTTTTGATAATTTTTATG+AGG | + | chr6_1:6503776-6503795 | Msa0871620:intron | 20.0% |
!! | AGAAACAAATTAAGCAAAAA+AGG | - | chr6_1:6504155-6504174 | None:intergenic | 20.0% |
!!! | TTTATGTTGATAATTGGTTA+TGG | + | chr6_1:6504182-6504201 | Msa0871620:intron | 20.0% |
!!! | TTATGTTGATAATTGGTTAT+GGG | + | chr6_1:6504183-6504202 | Msa0871620:intron | 20.0% |
!!! | TTTGATATTTTATGTGTCAA+TGG | + | chr6_1:6504452-6504471 | Msa0871620:intron | 20.0% |
!!! | TGTATTTTCTCAAATTATTG+CGG | + | chr6_1:6504517-6504536 | Msa0871620:intron | 20.0% |
!!! | CATTTTACCATGAATATTAT+TGG | + | chr6_1:6504778-6504797 | Msa0871620:intron | 20.0% |
!! | TGGATATGAAACAAAAAAAA+AGG | - | chr6_1:6505190-6505209 | None:intergenic | 20.0% |
!! | AGGTTTAAATTCCTATTATT+AGG | + | chr6_1:6505308-6505327 | Msa0871620:intron | 20.0% |
!! | AAAGTTCTATACCTAATAAT+AGG | - | chr6_1:6505322-6505341 | None:intergenic | 20.0% |
!! | CAAATGTCAATAAATAACAA+TGG | + | chr6_1:6505342-6505361 | Msa0871620:intron | 20.0% |
!!! | TGACATTTTTGTTTTTTGTA+TGG | + | chr6_1:6505391-6505410 | Msa0871620:intron | 20.0% |
!! | TAGTACATTATTCTCAATAA+AGG | + | chr6_1:6505421-6505440 | Msa0871620:intron | 20.0% |
!! | AGTACATTATTCTCAATAAA+GGG | + | chr6_1:6505422-6505441 | Msa0871620:intron | 20.0% |
!!! | TTTTGTATTCATAGACTTAT+AGG | - | chr6_1:6505471-6505490 | None:intergenic | 20.0% |
!! | TAACTATTGTAATTAACCTT+TGG | - | chr6_1:6505547-6505566 | None:intergenic | 20.0% |
!! | TTATAAACATCATATTAGAC+TGG | - | chr6_1:6505922-6505941 | None:intergenic | 20.0% |
!! | ACACATTAAAAATGTGTATA+AGG | - | chr6_1:6506236-6506255 | None:intergenic | 20.0% |
!! | GTATTTAATATGTCTAACTT+AGG | - | chr6_1:6506508-6506527 | None:intergenic | 20.0% |
!!! | ATTTTAGAGAAAATTTTACC+TGG | - | chr6_1:6507093-6507112 | None:intergenic | 20.0% |
!!! | AATTTTCTAAAGTTTGAATC+AGG | - | chr6_1:6507297-6507316 | None:intergenic | 20.0% |
!!! | GATTCAAACTTTAGAAAATT+AGG | + | chr6_1:6507297-6507316 | Msa0871620:intron | 20.0% |
!! | ATATGATTAAAGTTTATGTG+GGG | - | chr6_1:6507682-6507701 | None:intergenic | 20.0% |
!! | GATATGATTAAAGTTTATGT+GGG | - | chr6_1:6507683-6507702 | None:intergenic | 20.0% |
!! | AGATATGATTAAAGTTTATG+TGG | - | chr6_1:6507684-6507703 | None:intergenic | 20.0% |
!!! | TTTGTCTTTTTTTTTCTGTA+GGG | - | chr6_1:6507929-6507948 | None:intergenic | 20.0% |
!!! | TTTTGTCTTTTTTTTTCTGT+AGG | - | chr6_1:6507930-6507949 | None:intergenic | 20.0% |
!! | ATAACAAACTTCTATATTGA+TGG | - | chr6_1:6508099-6508118 | None:intergenic | 20.0% |
!!! | ATTGCATTGAATTTTTCAGT+TGG | + | chr6_1:6503704-6503723 | Msa0871620:intron | 25.0% |
! | AAACTTAATTTCAGCTCAAA+GGG | - | chr6_1:6503838-6503857 | None:intergenic | 25.0% |
!!! | ATTTTTGGTTTTGGTTTGAA+TGG | + | chr6_1:6503897-6503916 | Msa0871620:exon | 25.0% |
!!! | TTTTTGGTTTTGGTTTGAAT+GGG | + | chr6_1:6503898-6503917 | Msa0871620:exon | 25.0% |
! | TGAATATAATCAATGTGTCA+CGG | - | chr6_1:6504298-6504317 | None:intergenic | 25.0% |
!! | GTATTTTCTCAAATTATTGC+GGG | + | chr6_1:6504518-6504537 | Msa0871620:intron | 25.0% |
!!! | ATTTTTTGTGACAACTCATA+AGG | + | chr6_1:6504648-6504667 | Msa0871620:intron | 25.0% |
! | AACTCATCCAATAATATTCA+TGG | - | chr6_1:6504788-6504807 | None:intergenic | 25.0% |
! | TTAGAAGTCAAATGAATGAA+TGG | - | chr6_1:6505210-6505229 | None:intergenic | 25.0% |
! | GATTATTTGGATTTACTTTG+TGG | + | chr6_1:6505234-6505253 | Msa0871620:intron | 25.0% |
! | GATTTACTTTGTGGTTAATT+AGG | + | chr6_1:6505243-6505262 | Msa0871620:intron | 25.0% |
! | AGATTATAGGTTAGTAATGA+AGG | + | chr6_1:6505288-6505307 | Msa0871620:intron | 25.0% |
! | GTACATTATTCTCAATAAAG+GGG | + | chr6_1:6505423-6505442 | Msa0871620:intron | 25.0% |
!! | ATGTGCAAGTATGTAATTTT+TGG | - | chr6_1:6505864-6505883 | None:intergenic | 25.0% |
! | ACATTACACAGTCAATATAT+TGG | + | chr6_1:6505974-6505993 | Msa0871620:intron | 25.0% |
!! | TTTTTAATGTGTTGTACAGA+TGG | + | chr6_1:6506244-6506263 | Msa0871620:intron | 25.0% |
!! | TTTTAATGTGTTGTACAGAT+GGG | + | chr6_1:6506245-6506264 | Msa0871620:intron | 25.0% |
!!! | GTTTTTAGTAAGCTACTTTT+TGG | + | chr6_1:6506326-6506345 | Msa0871620:CDS | 25.0% |
! | GCTGCAATATTTAATGTTAA+GGG | + | chr6_1:6506736-6506755 | Msa0871620:intron | 25.0% |
! | TTTAATGTTAAGGGAAAGTA+CGG | + | chr6_1:6506745-6506764 | Msa0871620:intron | 25.0% |
!! | AATGCTAATTATTTTCAGCT+AGG | - | chr6_1:6506843-6506862 | None:intergenic | 25.0% |
! | CATTTATATTCTAATGTTGC+AGG | + | chr6_1:6506859-6506878 | Msa0871620:intron | 25.0% |
!!! | AGAAAGGCATAACTATTTTA+AGG | - | chr6_1:6507138-6507157 | None:intergenic | 25.0% |
!! | CAACTTTTAAATCTTCAAGT+TGG | - | chr6_1:6507796-6507815 | None:intergenic | 25.0% |
! | CTTGAAGATTTAAAAGTTGA+AGG | + | chr6_1:6507797-6507816 | Msa0871620:CDS | 25.0% |
!! | TTGATGGCTAAAATTAAACA+TGG | - | chr6_1:6508083-6508102 | None:intergenic | 25.0% |
TTTGGAAAGAGAAATAGTGA+AGG | - | chr6_1:6503369-6503388 | None:intergenic | 30.0% | |
!!! | GATGTTTTTTGATGAGGTTA+AGG | - | chr6_1:6503410-6503429 | None:intergenic | 30.0% |
!!! | ACATTGTTTTTTTGGTCACT+AGG | - | chr6_1:6503466-6503485 | None:intergenic | 30.0% |
ATAAAAACAGAGGAAAACAG+AGG | - | chr6_1:6503592-6503611 | None:intergenic | 30.0% | |
AGGAGTAGTAATAAAAACAG+AGG | - | chr6_1:6503602-6503621 | None:intergenic | 30.0% | |
TTATCAAAACAGAGGAAACA+GGG | - | chr6_1:6503768-6503787 | None:intergenic | 30.0% | |
ATTATCAAAACAGAGGAAAC+AGG | - | chr6_1:6503769-6503788 | None:intergenic | 30.0% | |
CAAACTTAATTTCAGCTCAA+AGG | - | chr6_1:6503839-6503858 | None:intergenic | 30.0% | |
!! | GATGCATTGAATTTTTCAGT+TGG | + | chr6_1:6503858-6503877 | Msa0871620:intron | 30.0% |
! | GAACAAAGTTGGAAGATTTT+TGG | + | chr6_1:6503882-6503901 | Msa0871620:five_prime_UTR | 30.0% |
!!! | AGTTGGAAGATTTTTGGTTT+TGG | + | chr6_1:6503888-6503907 | Msa0871620:five_prime_UTR | 30.0% |
!!! | TTTTGGTTTTGGTTTGAATG+GGG | + | chr6_1:6503899-6503918 | Msa0871620:exon | 30.0% |
! | AGATTTTTGTGAATTGCCAA+AGG | + | chr6_1:6503954-6503973 | Msa0871620:CDS | 30.0% |
CTGTTAGTAATTGTTTCCTT+TGG | - | chr6_1:6503973-6503992 | None:intergenic | 30.0% | |
!!! | TTATTTTGGTATCCACATGT+CGG | + | chr6_1:6504337-6504356 | Msa0871620:intron | 30.0% |
ATATTATTGGATGAGTTGTG+TGG | + | chr6_1:6504791-6504810 | Msa0871620:intron | 30.0% | |
TATTATTGGATGAGTTGTGT+GGG | + | chr6_1:6504792-6504811 | Msa0871620:intron | 30.0% | |
! | CATTCATTTGACTTCTAATG+TGG | + | chr6_1:6505212-6505231 | Msa0871620:intron | 30.0% |
! | GACTTCTAATGTGGATTATT+TGG | + | chr6_1:6505221-6505240 | Msa0871620:intron | 30.0% |
! | GTGATAATGAGCTAGATTAT+AGG | + | chr6_1:6505275-6505294 | Msa0871620:intron | 30.0% |
CTATGTCAATAAAACTCCAA+AGG | + | chr6_1:6505528-6505547 | Msa0871620:intron | 30.0% | |
ACACAAACACTGGTAAAAAT+CGG | - | chr6_1:6505652-6505671 | None:intergenic | 30.0% | |
ATCCTAATATGCCATATTTC+AGG | + | chr6_1:6505817-6505836 | Msa0871620:CDS | 30.0% | |
TCCTAATATGCCATATTTCA+GGG | + | chr6_1:6505818-6505837 | Msa0871620:CDS | 30.0% | |
TTATGAGTGTGAGAAATTCT+CGG | + | chr6_1:6505884-6505903 | Msa0871620:CDS | 30.0% | |
TTACACAGTCAATATATTGG+TGG | + | chr6_1:6505977-6505996 | Msa0871620:intron | 30.0% | |
ATTCATAATATCTCGAATGC+AGG | + | chr6_1:6506068-6506087 | Msa0871620:intron | 30.0% | |
TTCATAATATCTCGAATGCA+GGG | + | chr6_1:6506069-6506088 | Msa0871620:intron | 30.0% | |
CAAACAGTTTGCAAAATATG+CGG | + | chr6_1:6506106-6506125 | Msa0871620:intron | 30.0% | |
!! | GAAGAGTTCTGTTTTATTGA+TGG | + | chr6_1:6506207-6506226 | Msa0871620:intron | 30.0% |
TACTAAAAACTGTCATTCCA+GGG | - | chr6_1:6506316-6506335 | None:intergenic | 30.0% | |
TTACTAAAAACTGTCATTCC+AGG | - | chr6_1:6506317-6506336 | None:intergenic | 30.0% | |
TGCACATCAAATCATATGAT+TGG | + | chr6_1:6506354-6506373 | Msa0871620:CDS | 30.0% | |
GCACATCAAATCATATGATT+GGG | + | chr6_1:6506355-6506374 | Msa0871620:CDS | 30.0% | |
CGCTGCAATATTTAATGTTA+AGG | + | chr6_1:6506735-6506754 | Msa0871620:intron | 30.0% | |
! | GAAAATTTTACCTGGAAAGT+TGG | - | chr6_1:6507085-6507104 | None:intergenic | 30.0% |
TGAAGTGTATTAGTGAAGAA+AGG | - | chr6_1:6507154-6507173 | None:intergenic | 30.0% | |
TATATCTCTTGACATATCCT+CGG | + | chr6_1:6507199-6507218 | Msa0871620:intron | 30.0% | |
! | TTGTGTGTTTTCTTTTACTG+CGG | - | chr6_1:6507230-6507249 | None:intergenic | 30.0% |
! | AGTTAAGTGATCTTTGTTGT+TGG | + | chr6_1:6507256-6507275 | Msa0871620:intron | 30.0% |
CAATCATGAATCTTGACAAT+TGG | - | chr6_1:6507362-6507381 | None:intergenic | 30.0% | |
TGGAATTCATTGCAACATAA+CGG | + | chr6_1:6507392-6507411 | Msa0871620:intron | 30.0% | |
AAATATACATTGCGTGACTT+TGG | - | chr6_1:6507444-6507463 | None:intergenic | 30.0% | |
AGAAGTAACACCTTAGATTT+CGG | + | chr6_1:6507486-6507505 | Msa0871620:intron | 30.0% | |
TCAATCAAGATCAAATGACT+TGG | - | chr6_1:6507570-6507589 | None:intergenic | 30.0% | |
AAATATCGATAGTGACATGT+GGG | - | chr6_1:6507645-6507664 | None:intergenic | 30.0% | |
! | ATCGATATTTCTATTTGTGC+CGG | + | chr6_1:6507655-6507674 | Msa0871620:intron | 30.0% |
TCTCATGAAATTTCAGTTGA+AGG | + | chr6_1:6507716-6507735 | Msa0871620:intron | 30.0% | |
AGGAAAGGAATGTTTATGAA+TGG | + | chr6_1:6507756-6507775 | Msa0871620:CDS | 30.0% | |
TTATGAATGGCTACAAGAAA+AGG | + | chr6_1:6507769-6507788 | Msa0871620:CDS | 30.0% | |
! | CAATCTTGTAGATTTTATGC+TGG | + | chr6_1:6507964-6507983 | Msa0871620:three_prime_UTR | 30.0% |
! | TTTTCTTCTCCTTTTCTTCA+TGG | + | chr6_1:6508020-6508039 | Msa0871620:three_prime_UTR | 30.0% |
AAAGAGAAGTCAGAAAACCA+GGG | - | chr6_1:6503251-6503270 | None:intergenic | 35.0% | |
AAGAAGTAGCAAAGAAGAAG+GGG | - | chr6_1:6503307-6503326 | None:intergenic | 35.0% | |
GAAGAAGTAGCAAAGAAGAA+GGG | - | chr6_1:6503308-6503327 | None:intergenic | 35.0% | |
GAAAGAGAAATAGTGAAGGT+TGG | - | chr6_1:6503365-6503384 | None:intergenic | 35.0% | |
!!! | GTTGAGGATGTTTTTTGATG+AGG | - | chr6_1:6503416-6503435 | None:intergenic | 35.0% |
!!! | GGTCACTAGGATGTTTTTTT+TGG | - | chr6_1:6503453-6503472 | None:intergenic | 35.0% |
TATCAAAACAGAGGAAACAG+GGG | - | chr6_1:6503767-6503786 | None:intergenic | 35.0% | |
!! | TTTCAGTTGGTGAACAAAGT+TGG | + | chr6_1:6503871-6503890 | Msa0871620:intron | 35.0% |
AGAACCTTAGCTGATAGAAA+AGG | + | chr6_1:6503928-6503947 | Msa0871620:CDS | 35.0% | |
! | TCTTCCTTTTCTATCAGCTA+AGG | - | chr6_1:6503935-6503954 | None:intergenic | 35.0% |
AGGAAACAATTACTAACAGC+AGG | + | chr6_1:6503974-6503993 | Msa0871620:CDS | 35.0% | |
!!! | GAGACTTTTTGAGACTTGTA+AGG | + | chr6_1:6504041-6504060 | Msa0871620:CDS | 35.0% |
ATATGCGTCAGTATCCTTAT+TGG | + | chr6_1:6504544-6504563 | Msa0871620:intron | 35.0% | |
ATTATTGGATGAGTTGTGTG+GGG | + | chr6_1:6504793-6504812 | Msa0871620:intron | 35.0% | |
ATAGGCAAATCAAAGAACCT+CGG | - | chr6_1:6504947-6504966 | None:intergenic | 35.0% | |
CTAGAGTTGTATACTTTGCA+TGG | - | chr6_1:6505751-6505770 | None:intergenic | 35.0% | |
! | AAAACCAGAAGATGTTGACT+TGG | + | chr6_1:6505794-6505813 | Msa0871620:CDS | 35.0% |
TAGAGATATCCCAAGTGAAT+GGG | - | chr6_1:6505955-6505974 | None:intergenic | 35.0% | |
! | GTCAATACATTGGTAACAGT+TGG | - | chr6_1:6506041-6506060 | None:intergenic | 35.0% |
AATTCACGCAGTCAATACAT+TGG | - | chr6_1:6506051-6506070 | None:intergenic | 35.0% | |
!! | ATATTTTGTTTGCCACCTTC+TGG | + | chr6_1:6506269-6506288 | Msa0871620:CDS | 35.0% |
CATCAAATCATATGATTGGG+TGG | + | chr6_1:6506358-6506377 | Msa0871620:CDS | 35.0% | |
TTGAAAATGGTAGGAGATTC+AGG | - | chr6_1:6506395-6506414 | None:intergenic | 35.0% | |
! | ACTTTCTGAGGGTTTGAAAA+TGG | - | chr6_1:6506408-6506427 | None:intergenic | 35.0% |
AAGTACTACTCACTTTCTGA+GGG | - | chr6_1:6506419-6506438 | None:intergenic | 35.0% | |
TAAGTACTACTCACTTTCTG+AGG | - | chr6_1:6506420-6506439 | None:intergenic | 35.0% | |
AGTTAACGGTTGCAATGTAA+CGG | - | chr6_1:6506663-6506682 | None:intergenic | 35.0% | |
TATAAGATAGAAGGGTTGCA+AGG | - | chr6_1:6506934-6506953 | None:intergenic | 35.0% | |
CCTCAGGATATAAGATAGAA+GGG | - | chr6_1:6506942-6506961 | None:intergenic | 35.0% | |
TCCTCAGGATATAAGATAGA+AGG | - | chr6_1:6506943-6506962 | None:intergenic | 35.0% | |
TCTATCTTATATCCTGAGGA+TGG | + | chr6_1:6506943-6506962 | Msa0871620:CDS | 35.0% | |
TTACCTGGAAAGTTGGAAAA+CGG | - | chr6_1:6507078-6507097 | None:intergenic | 35.0% | |
! | ATTTTACGATCACGATCACA+TGG | + | chr6_1:6507460-6507479 | Msa0871620:intron | 35.0% |
AAATCTCGATCCGAAATCTA+AGG | - | chr6_1:6507499-6507518 | None:intergenic | 35.0% | |
AAGCACACAATGAGACAAAT+CGG | - | chr6_1:6507599-6507618 | None:intergenic | 35.0% | |
GAAATATCGATAGTGACATG+TGG | - | chr6_1:6507646-6507665 | None:intergenic | 35.0% | |
ATTAAAGTTTATGTGGGGTC+CGG | - | chr6_1:6507677-6507696 | None:intergenic | 35.0% | |
TAAACATTCCTTTCCTCTTC+TGG | - | chr6_1:6507752-6507771 | None:intergenic | 35.0% | |
TCTGTTGTTCCATGAAGAAA+AGG | - | chr6_1:6508032-6508051 | None:intergenic | 35.0% | |
CTTCATGGAACAACAGAAAA+AGG | + | chr6_1:6508035-6508054 | Msa0871620:three_prime_UTR | 35.0% | |
AAGAGAAGTCAGAAAACCAG+GGG | - | chr6_1:6503250-6503269 | None:intergenic | 40.0% | |
CAAAGAGAAGTCAGAAAACC+AGG | - | chr6_1:6503252-6503271 | None:intergenic | 40.0% | |
GTTGAGAGAGAGAAAACAGT+TGG | - | chr6_1:6503281-6503300 | None:intergenic | 40.0% | |
GGAAGAAGTAGCAAAGAAGA+AGG | - | chr6_1:6503309-6503328 | None:intergenic | 40.0% | |
AGAGGAAAACAGAGGAAACA+GGG | - | chr6_1:6503584-6503603 | None:intergenic | 40.0% | |
CAATTACTAACAGCAGGTCA+AGG | + | chr6_1:6503980-6503999 | Msa0871620:CDS | 40.0% | |
GTCTCAAAAAGTCTCTGAAC+CGG | - | chr6_1:6504036-6504055 | None:intergenic | 40.0% | |
AAGGAAGTCTTTGCTTCTAG+TGG | + | chr6_1:6504060-6504079 | Msa0871620:CDS | 40.0% | |
AGGAAGTCTTTGCTTCTAGT+GGG | + | chr6_1:6504061-6504080 | Msa0871620:CDS | 40.0% | |
AACTTATCAATGTCCTGAGC+TGG | - | chr6_1:6504102-6504121 | None:intergenic | 40.0% | |
CTCAGGACATTGATAAGTTG+CGG | + | chr6_1:6504103-6504122 | Msa0871620:CDS | 40.0% | |
! | GATAAGTTGCGGTCTGTTTT+AGG | + | chr6_1:6504114-6504133 | Msa0871620:CDS | 40.0% |
CACTCATCAAACACAAGACA+CGG | - | chr6_1:6504586-6504605 | None:intergenic | 40.0% | |
TTATTGGATGAGTTGTGTGG+GGG | + | chr6_1:6504794-6504813 | Msa0871620:intron | 40.0% | |
ACACATCACATCTCACACTA+AGG | - | chr6_1:6504862-6504881 | None:intergenic | 40.0% | |
ACAATGTGATGTCAAGTCCA+TGG | + | chr6_1:6505047-6505066 | Msa0871620:intron | 40.0% | |
GTCTCATTCACATTAGACCA+TGG | - | chr6_1:6505067-6505086 | None:intergenic | 40.0% | |
!! | CAATAAAGGGGAAGCATTGT+TGG | + | chr6_1:6505435-6505454 | Msa0871620:intron | 40.0% |
TGAAACACTGACACATCAGA+TGG | + | chr6_1:6505574-6505593 | Msa0871620:intron | 40.0% | |
GTACGTGGTTCATAGGTTAT+AGG | + | chr6_1:6505681-6505700 | Msa0871620:intron | 40.0% | |
! | TAGCTTCTCTTTTGTGCAGA+TGG | + | chr6_1:6505768-6505787 | Msa0871620:intron | 40.0% |
GCCCTGAAATATGGCATATT+AGG | - | chr6_1:6505822-6505841 | None:intergenic | 40.0% | |
GATGCATTAGCCCTGAAATA+TGG | - | chr6_1:6505831-6505850 | None:intergenic | 40.0% | |
AAAACGGATCCCATTCACTT+GGG | + | chr6_1:6505943-6505962 | Msa0871620:intron | 40.0% | |
GTAGAGATATCCCAAGTGAA+TGG | - | chr6_1:6505956-6505975 | None:intergenic | 40.0% | |
! | GTCAATATATTGGTGGCCAT+TGG | + | chr6_1:6505984-6506003 | Msa0871620:intron | 40.0% |
! | ACAGTTCGATCTGAAACCAA+TGG | - | chr6_1:6506003-6506022 | None:intergenic | 40.0% |
TGTAGAGGAATAACACCAGA+AGG | - | chr6_1:6506287-6506306 | None:intergenic | 40.0% | |
ATTCCTCTACATAATCACCC+TGG | + | chr6_1:6506296-6506315 | Msa0871620:CDS | 40.0% | |
ATTCCAGGGTGATTATGTAG+AGG | - | chr6_1:6506302-6506321 | None:intergenic | 40.0% | |
AAAATGGTAGGAGATTCAGG+AGG | - | chr6_1:6506392-6506411 | None:intergenic | 40.0% | |
TCTGAGGGTTTGAAAATGGT+AGG | - | chr6_1:6506404-6506423 | None:intergenic | 40.0% | |
ACATTGCAACCGTTAACTTC+AGG | + | chr6_1:6506665-6506684 | Msa0871620:intron | 40.0% | |
GCACTTTCACCTGAAGTTAA+CGG | - | chr6_1:6506677-6506696 | None:intergenic | 40.0% | |
! | ACTTTTGCTAACCTCAACTC+AGG | - | chr6_1:6506886-6506905 | None:intergenic | 40.0% |
GTTGAGGTTAGCAAAAGTGA+AGG | + | chr6_1:6506888-6506907 | Msa0871620:CDS | 40.0% | |
CCCTTCTATCTTATATCCTG+AGG | + | chr6_1:6506939-6506958 | Msa0871620:CDS | 40.0% | |
ATCTTATATCCTGAGGATGG+TGG | + | chr6_1:6506946-6506965 | Msa0871620:CDS | 40.0% | |
TGTGCAGTTCTTGATGTTCT+TGG | + | chr6_1:6507000-6507019 | Msa0871620:CDS | 40.0% | |
CCATCAAGATCAGAATATGG+AGG | - | chr6_1:6507027-6507046 | None:intergenic | 40.0% | |
CCTCCATATTCTGATCTTGA+TGG | + | chr6_1:6507024-6507043 | Msa0871620:CDS | 40.0% | |
CTGCCATCAAGATCAGAATA+TGG | - | chr6_1:6507030-6507049 | None:intergenic | 40.0% | |
! | TATCCGTTTTCCAACTTTCC+AGG | + | chr6_1:6507072-6507091 | Msa0871620:CDS | 40.0% |
!! | TTGCGTGACTTTGGAATTCA+CGG | - | chr6_1:6507435-6507454 | None:intergenic | 40.0% |
TATCCATACCAGAAGAGGAA+AGG | + | chr6_1:6507741-6507760 | Msa0871620:CDS | 40.0% | |
ATTCCTTTCCTCTTCTGGTA+TGG | - | chr6_1:6507747-6507766 | None:intergenic | 40.0% | |
GTTGAAGGAAGAATGTACAG+TGG | + | chr6_1:6507812-6507831 | Msa0871620:CDS | 40.0% | |
TGCTAACTCTCCACAATAGT+TGG | - | chr6_1:6507839-6507858 | None:intergenic | 40.0% | |
!! | GTGAAGGTTGGTGAAGATTG+AGG | - | chr6_1:6503353-6503372 | None:intergenic | 45.0% |
! | GGTTGCACAAGTTGTTGTTG+AGG | - | chr6_1:6503432-6503451 | None:intergenic | 45.0% |
AACAGAGGAAACAGGGGAAT+TGG | - | chr6_1:6503577-6503596 | None:intergenic | 45.0% | |
GAGGAAAACAGAGGAAACAG+GGG | - | chr6_1:6503583-6503602 | None:intergenic | 45.0% | |
CAGAGGAAAACAGAGGAAAC+AGG | - | chr6_1:6503585-6503604 | None:intergenic | 45.0% | |
AACAGAGGAAACAGGGGAAT+TGG | - | chr6_1:6503577-6503596 | None:intergenic | 45.0% | |
TTACTAACAGCAGGTCAAGG+AGG | + | chr6_1:6503983-6504002 | Msa0871620:CDS | 45.0% | |
TCAAAAAGTCTCTGAACCGG+CGG | - | chr6_1:6504033-6504052 | None:intergenic | 45.0% | |
TATCAATGTCCTGAGCTGGT+GGG | - | chr6_1:6504098-6504117 | None:intergenic | 45.0% | |
TTATCAATGTCCTGAGCTGG+TGG | - | chr6_1:6504099-6504118 | None:intergenic | 45.0% | |
!!! | CGGTGTCGTGTTGATTTTCA+TGG | + | chr6_1:6504357-6504376 | Msa0871620:intron | 45.0% |
TCAATGGATACCGACATGAC+AGG | + | chr6_1:6504468-6504487 | Msa0871620:intron | 45.0% | |
CAATGGATACCGACATGACA+GGG | + | chr6_1:6504469-6504488 | Msa0871620:intron | 45.0% | |
AGTATGTGTCCCTGTCATGT+CGG | - | chr6_1:6504481-6504500 | None:intergenic | 45.0% | |
! | TCCTTATTGGTGTCCCTGTT+TGG | + | chr6_1:6504557-6504576 | Msa0871620:intron | 45.0% |
ACCAAACAGGGACACCAATA+AGG | - | chr6_1:6504561-6504580 | None:intergenic | 45.0% | |
TATTGGATGAGTTGTGTGGG+GGG | + | chr6_1:6504795-6504814 | Msa0871620:intron | 45.0% | |
!! | TAAAGGGGAAGCATTGTTGG+TGG | + | chr6_1:6505438-6505457 | Msa0871620:intron | 45.0% |
! | ACATCAGATGGAAAGCGTGT+CGG | + | chr6_1:6505586-6505605 | Msa0871620:intron | 45.0% |
CGTTTGTGTACGTGGTTCAT+AGG | + | chr6_1:6505674-6505693 | Msa0871620:intron | 45.0% | |
GGATCCAAGTCAACATCTTC+TGG | - | chr6_1:6505801-6505820 | None:intergenic | 45.0% | |
GAAAACGGATCCCATTCACT+TGG | + | chr6_1:6505942-6505961 | Msa0871620:intron | 45.0% | |
AGAGGAATAACACCAGAAGG+TGG | - | chr6_1:6506284-6506303 | None:intergenic | 45.0% | |
! | GGTGAAAGTGCAGACAAATG+CGG | + | chr6_1:6506686-6506705 | Msa0871620:intron | 45.0% |
AGACAAATGCGGCTGTAACT+TGG | + | chr6_1:6506697-6506716 | Msa0871620:intron | 45.0% | |
! | AGGGAAAGTACGGACAAATG+TGG | + | chr6_1:6506755-6506774 | Msa0871620:intron | 45.0% |
TTCATGATTGCGTGACGAGA+TGG | + | chr6_1:6507372-6507391 | Msa0871620:intron | 45.0% | |
TTTGTGCCTGTACGCAATCT+AGG | + | chr6_1:6507618-6507637 | Msa0871620:intron | 45.0% | |
AGGACTATCCATACCAGAAG+AGG | + | chr6_1:6507736-6507755 | Msa0871620:CDS | 45.0% | |
GTACAGTGGTCCAACTATTG+TGG | + | chr6_1:6507826-6507845 | Msa0871620:CDS | 45.0% | |
!!! | AAATTTTTATTTTATTTGAT+AGG | - | chr6_1:6504965-6504984 | None:intergenic | 5.0% |
GTCTTTGCTTCTAGTGGGAC+AGG | + | chr6_1:6504066-6504085 | Msa0871620:CDS | 50.0% | |
!! | TGCGGTCTGTTTTAGGTACG+AGG | + | chr6_1:6504121-6504140 | Msa0871620:intron | 50.0% |
ATCAACACGACACCGACATG+TGG | - | chr6_1:6504352-6504371 | None:intergenic | 50.0% | |
CAAGACACGGACACCAAACA+GGG | - | chr6_1:6504573-6504592 | None:intergenic | 50.0% | |
ACAAGACACGGACACCAAAC+AGG | - | chr6_1:6504574-6504593 | None:intergenic | 50.0% | |
CACAAACGCGACACAAACAC+TGG | - | chr6_1:6505662-6505681 | None:intergenic | 50.0% | |
TTGTGTCGCGTTTGTGTACG+TGG | + | chr6_1:6505666-6505685 | Msa0871620:intron | 50.0% | |
GGGCTAATGCATCTCACAGA+AGG | + | chr6_1:6505838-6505857 | Msa0871620:CDS | 50.0% | |
! | CAACTGCGGTGGTTTGGATA+TGG | - | chr6_1:6506628-6506647 | None:intergenic | 50.0% |
CAACTACAACTGCGGTGGTT+TGG | - | chr6_1:6506634-6506653 | None:intergenic | 50.0% | |
AACCACCGCAGTTGTAGTTG+CGG | + | chr6_1:6506634-6506653 | Msa0871620:intron | 50.0% | |
GGTAACCGCAACTACAACTG+CGG | - | chr6_1:6506642-6506661 | None:intergenic | 50.0% | |
ATGCGGCTGTAACTTGGTCA+CGG | + | chr6_1:6506703-6506722 | Msa0871620:intron | 50.0% | |
ATGTTGCAGGTCCTGAGTTG+AGG | + | chr6_1:6506872-6506891 | Msa0871620:intron | 50.0% | |
! | CTTTTACTGCGGAGAATCCG+AGG | - | chr6_1:6507219-6507238 | None:intergenic | 50.0% |
ACAGCAGGTCAAGGAGGAAC+CGG | + | chr6_1:6503989-6504008 | Msa0871620:CDS | 55.0% | |
AGGAATTGTCCCACCAGCTC+AGG | + | chr6_1:6504086-6504105 | Msa0871620:CDS | 55.0% | |
! | GATGGAAAGCGTGTCGGTGT+CGG | + | chr6_1:6505592-6505611 | Msa0871620:intron | 55.0% |
AACCGCAACTACAACTGCGG+TGG | - | chr6_1:6506639-6506658 | None:intergenic | 55.0% | |
TGCAAGTTGCCACCATCCTC+AGG | - | chr6_1:6506958-6506977 | None:intergenic | 55.0% | |
GTGGGACCTAGATTGCGTAC+AGG | - | chr6_1:6507627-6507646 | None:intergenic | 55.0% | |
GCATCTTCTTCTGACGCCGC+CGG | - | chr6_1:6504011-6504030 | None:intergenic | 60.0% | |
GCGTCAGAAGAAGATGCCGC+CGG | + | chr6_1:6504014-6504033 | Msa0871620:CDS | 60.0% | |
!! | GTGTCACGGTGTCGTGTCAG+TGG | - | chr6_1:6504284-6504303 | None:intergenic | 60.0% |
GCAGGTCAAGGAGGAACCGG+CGG | + | chr6_1:6503992-6504011 | Msa0871620:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6_1 | gene | 6503237 | 6508157 | 6503237 | ID=Msa0871620;Name=Msa0871620 |
chr6_1 | mRNA | 6503237 | 6508157 | 6503237 | ID=Msa0871620-mRNA-1;Parent=Msa0871620;Name=Msa0871620-mRNA-1;_AED=0.14;_eAED=0.14;_QI=286|1|1|1|0.8|0.66|6|301|279 |
chr6_1 | exon | 6503237 | 6503483 | 6503237 | ID=Msa0871620-mRNA-1:exon:2064;Parent=Msa0871620-mRNA-1 |
chr6_1 | exon | 6503877 | 6504135 | 6503877 | ID=Msa0871620-mRNA-1:exon:2065;Parent=Msa0871620-mRNA-1 |
chr6_1 | exon | 6505787 | 6505905 | 6505787 | ID=Msa0871620-mRNA-1:exon:2066;Parent=Msa0871620-mRNA-1 |
chr6_1 | exon | 6506263 | 6506425 | 6506263 | ID=Msa0871620-mRNA-1:exon:2067;Parent=Msa0871620-mRNA-1 |
chr6_1 | exon | 6506881 | 6507093 | 6506881 | ID=Msa0871620-mRNA-1:exon:2068;Parent=Msa0871620-mRNA-1 |
chr6_1 | exon | 6507732 | 6508157 | 6507732 | ID=Msa0871620-mRNA-1:exon:2069;Parent=Msa0871620-mRNA-1 |
chr6_1 | five_prime_UTR | 6503237 | 6503483 | 6503237 | ID=Msa0871620-mRNA-1:five_prime_utr;Parent=Msa0871620-mRNA-1 |
chr6_1 | five_prime_UTR | 6503877 | 6503915 | 6503877 | ID=Msa0871620-mRNA-1:five_prime_utr;Parent=Msa0871620-mRNA-1 |
chr6_1 | CDS | 6503916 | 6504135 | 6503916 | ID=Msa0871620-mRNA-1:cds;Parent=Msa0871620-mRNA-1 |
chr6_1 | CDS | 6505787 | 6505905 | 6505787 | ID=Msa0871620-mRNA-1:cds;Parent=Msa0871620-mRNA-1 |
chr6_1 | CDS | 6506263 | 6506425 | 6506263 | ID=Msa0871620-mRNA-1:cds;Parent=Msa0871620-mRNA-1 |
chr6_1 | CDS | 6506881 | 6507093 | 6506881 | ID=Msa0871620-mRNA-1:cds;Parent=Msa0871620-mRNA-1 |
chr6_1 | CDS | 6507732 | 6507856 | 6507732 | ID=Msa0871620-mRNA-1:cds;Parent=Msa0871620-mRNA-1 |
chr6_1 | three_prime_UTR | 6507857 | 6508157 | 6507857 | ID=Msa0871620-mRNA-1:three_prime_utr;Parent=Msa0871620-mRNA-1 |
Gene Sequence |
Protein sequence |