AlfalfaGEDB | Msa1433060

M. sativa cultivar zhongmu-4 / Msa1433060

KEGG: K16075
GO: GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006996 GO:0008150 GO:0008324 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009657 GO:0009668 GO:0009941 GO:0009987 GO:0010027 GO:0010117 GO:0010960 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0016043 GO:0022857 GO:0022890 GO:0030001 GO:0031967 GO:0031975 GO:0034220 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055065 GO:0055080 GO:0055085 GO:0061024 GO:0065007 GO:0065008 GO:0070838 GO:0071840 GO:0072507 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:1903830
PFAM: PF01544.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1433060	XP_013464881.1	86.335	483	27	3	1	483	1	444	0.0	813

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1433060	sp\|Q058N4\|MRS2B_ARATH	71.159	371	73	3	113	483	123	459	2.20e-171	493

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1433060	A0A072VBF4	86.335	483	27	3	1	483	1	444	0.0	813

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000180	Msa1433060	0.823492	1.345731e-53	-8.615850e-47
Msa0000220	Msa1433060	0.826167	3.147224e-54	-8.615850e-47
Msa0000610	Msa1433060	0.897711	1.078980e-76	-8.615850e-47
Msa0001040	Msa1433060	0.825967	3.511416e-54	-8.615850e-47
Msa0001510	Msa1433060	0.827731	1.330181e-54	-8.615850e-47
Msa0002110	Msa1433060	0.836706	7.994839e-57	-8.615850e-47
Msa0002690	Msa1433060	0.879338	1.352303e-69	-8.615850e-47
Msa0002700	Msa1433060	0.883558	4.052768e-71	-8.615850e-47
Msa0003340	Msa1433060	0.848019	8.002304e-60	-8.615850e-47
Msa0003370	Msa1433060	0.835104	2.037216e-56	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1433060	MtrunA17_Chr2g0320641	86.335	483	27	3	1	483	1	444	0.0	813
Msa1433060	MtrunA17_Chr8g0380621	22.951	366	242	8	138	483	75	420	1.53e-18	87.8
Msa1433060	MtrunA17_Chr8g0384941	26.440	382	231	11	129	472	43	412	1.55e-15	78.6
Msa1433060	MtrunA17_Chr1g0187901	25.613	367	234	9	129	474	33	381	7.28e-15	76.3
Msa1433060	MtrunA17_Chr1g0165861	25.389	193	124	5	290	470	7	191	3.14e-11	63.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1433060	AT5G22830.1	71.159	371	73	3	113	483	123	459	2.23e-172	493
Msa1433060	AT5G22830.2	71.159	371	73	3	113	483	123	459	2.23e-172	493
Msa1433060	AT5G09690.1	24.156	385	238	7	123	483	30	384	5.04e-20	92.4
Msa1433060	AT5G09690.2	24.031	387	236	8	123	483	41	395	5.43e-20	92.4
Msa1433060	AT5G09690.12	23.656	372	223	6	123	471	41	374	3.10e-18	87.0
Msa1433060	AT5G64560.1	25.538	372	231	10	136	482	41	391	1.28e-16	82.0
Msa1433060	AT1G80900.2	24.265	408	242	9	123	483	54	441	1.65e-15	79.0
Msa1433060	AT1G80900.1	24.265	408	242	9	123	483	54	441	1.65e-15	79.0
Msa1433060	AT1G16010.3	24.755	408	237	12	123	482	54	439	1.21e-14	76.3
Msa1433060	AT1G16010.1	24.755	408	237	12	123	482	54	439	1.21e-14	76.3

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Find 164 sgRNAs with CRISPR-Local

Find 471 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATATGTACCTGCTACAA+GGG	0.544963	tig0027224:-28299	None:intergenic
AAAGGCTTCTTGATTCTGCA+AGG	0.546966	tig0027224:+27695	Msa1433060:CDS
AAAGGTTGGAAGCGAAAGTG+AGG	0.504236	tig0027224:-22997	None:intergenic
AAATAAAGGAAACCATAATG+TGG	0.613910	tig0027224:+27041	Msa1433060:CDS
AAATGCATGAATAATTTATC+CGG	0.456117	tig0027224:-22852	None:intergenic
AAATTCAATGCCTTCTTTGC+TGG	0.336908	tig0027224:+24239	Msa1433060:CDS
AAATTCAGAAGTGGCGACGG+TGG	0.632676	tig0027224:-22946	None:intergenic
AACCCCAAGAGCAACAATGG+AGG	0.639651	tig0027224:+24843	Msa1433060:CDS
AACGGAACAAGGTTGGTAGT+TGG	0.534970	tig0027224:-22897	None:intergenic
AACTTTCACAAGAACTCGGT+AGG	0.589539	tig0027224:-30122	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATAGAACGAACTTCATAAAC+AGG	-	tig0027224:23330-23349	None:intergenic	30.0%
GTTCAATGAACTAAAACCAT+AGG	+	tig0027224:23423-23442	Msa1433060:intron	30.0%
TGAACTAAAACCATAGGATT+AGG	+	tig0027224:23429-23448	Msa1433060:intron	30.0%
TCTAAATTTGTGAATCGTGA+AGG	+	tig0027224:23539-23558	Msa1433060:intron	30.0%
TTGTAGAAGTGAAATCAGAT+GGG	+	tig0027224:23562-23581	Msa1433060:CDS	30.0%
AGACAATTATTGAAGTCTAG+TGG	+	tig0027224:23612-23631	Msa1433060:CDS	30.0%
GAGCTTATGAAAAGAACATA+TGG	-	tig0027224:23861-23880	None:intergenic	30.0%
AGATATTATACCAGCAAAGA+AGG	-	tig0027224:24252-24271	None:intergenic	30.0%
GGTATTAAGAAATGATAGAG+TGG	-	tig0027224:24278-24297	None:intergenic	30.0%
GTATGCTATACTTCTAAACT+TGG	+	tig0027224:24606-24625	Msa1433060:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0027224	gene	22776	30177	22776	ID=Msa1433060;Name=Msa1433060
tig0027224	mRNA	22776	30177	22776	ID=Msa1433060-mRNA-1;Parent=Msa1433060;Name=Msa1433060-mRNA-1;_AED=0.15;_eAED=0.15;_QI=200\|0.86\|0.93\|0.93\|0.86\|0.87\|16\|509\|483
tig0027224	exon	22776	23338	22776	ID=Msa1433060-mRNA-1:exon:8419;Parent=Msa1433060-mRNA-1
tig0027224	exon	23561	23633	23561	ID=Msa1433060-mRNA-1:exon:8420;Parent=Msa1433060-mRNA-1
tig0027224	exon	24190	24260	24190	ID=Msa1433060-mRNA-1:exon:8421;Parent=Msa1433060-mRNA-1
tig0027224	exon	24598	24683	24598	ID=Msa1433060-mRNA-1:exon:8422;Parent=Msa1433060-mRNA-1
tig0027224	exon	24800	24890	24800	ID=Msa1433060-mRNA-1:exon:8423;Parent=Msa1433060-mRNA-1
tig0027224	exon	25589	25673	25589	ID=Msa1433060-mRNA-1:exon:8424;Parent=Msa1433060-mRNA-1
tig0027224	exon	25987	26072	25987	ID=Msa1433060-mRNA-1:exon:8425;Parent=Msa1433060-mRNA-1
tig0027224	exon	26767	26847	26767	ID=Msa1433060-mRNA-1:exon:8426;Parent=Msa1433060-mRNA-1
tig0027224	exon	26934	27099	26934	ID=Msa1433060-mRNA-1:exon:8427;Parent=Msa1433060-mRNA-1
tig0027224	exon	27202	27247	27202	ID=Msa1433060-mRNA-1:exon:8428;Parent=Msa1433060-mRNA-1
tig0027224	exon	27669	27749	27669	ID=Msa1433060-mRNA-1:exon:8429;Parent=Msa1433060-mRNA-1
tig0027224	exon	28228	28310	28228	ID=Msa1433060-mRNA-1:exon:8430;Parent=Msa1433060-mRNA-1
tig0027224	exon	28884	28927	28884	ID=Msa1433060-mRNA-1:exon:8431;Parent=Msa1433060-mRNA-1
tig0027224	exon	29036	29153	29036	ID=Msa1433060-mRNA-1:exon:8432;Parent=Msa1433060-mRNA-1
tig0027224	exon	29584	29667	29584	ID=Msa1433060-mRNA-1:exon:8433;Parent=Msa1433060-mRNA-1
tig0027224	exon	29775	30177	29775	ID=Msa1433060-mRNA-1:exon:8434;Parent=Msa1433060-mRNA-1
tig0027224	five_prime_UTR	22776	22975	22776	ID=Msa1433060-mRNA-1:five_prime_utr;Parent=Msa1433060-mRNA-1
tig0027224	CDS	22976	23338	22976	ID=Msa1433060-mRNA-1:cds;Parent=Msa1433060-mRNA-1
tig0027224	CDS	23561	23633	23561	ID=Msa1433060-mRNA-1:cds;Parent=Msa1433060-mRNA-1
tig0027224	CDS	24190	24260	24190	ID=Msa1433060-mRNA-1:cds;Parent=Msa1433060-mRNA-1
tig0027224	CDS	24598	24683	24598	ID=Msa1433060-mRNA-1:cds;Parent=Msa1433060-mRNA-1
tig0027224	CDS	24800	24890	24800	ID=Msa1433060-mRNA-1:cds;Parent=Msa1433060-mRNA-1
tig0027224	CDS	25589	25673	25589	ID=Msa1433060-mRNA-1:cds;Parent=Msa1433060-mRNA-1
tig0027224	CDS	25987	26072	25987	ID=Msa1433060-mRNA-1:cds;Parent=Msa1433060-mRNA-1
tig0027224	CDS	26767	26847	26767	ID=Msa1433060-mRNA-1:cds;Parent=Msa1433060-mRNA-1
tig0027224	CDS	26934	27099	26934	ID=Msa1433060-mRNA-1:cds;Parent=Msa1433060-mRNA-1
tig0027224	CDS	27202	27247	27202	ID=Msa1433060-mRNA-1:cds;Parent=Msa1433060-mRNA-1
tig0027224	CDS	27669	27749	27669	ID=Msa1433060-mRNA-1:cds;Parent=Msa1433060-mRNA-1
tig0027224	CDS	28228	28310	28228	ID=Msa1433060-mRNA-1:cds;Parent=Msa1433060-mRNA-1
tig0027224	CDS	28884	28927	28884	ID=Msa1433060-mRNA-1:cds;Parent=Msa1433060-mRNA-1
tig0027224	CDS	29036	29131	29036	ID=Msa1433060-mRNA-1:cds;Parent=Msa1433060-mRNA-1
tig0027224	three_prime_UTR	29132	29153	29132	ID=Msa1433060-mRNA-1:three_prime_utr;Parent=Msa1433060-mRNA-1
tig0027224	three_prime_UTR	29584	29667	29584	ID=Msa1433060-mRNA-1:three_prime_utr;Parent=Msa1433060-mRNA-1
tig0027224	three_prime_UTR	29775	30177	29775	ID=Msa1433060-mRNA-1:three_prime_utr;Parent=Msa1433060-mRNA-1

Gene Sequence

>Msa1433060

ATGGCTTTAACTCTAACTTCTCCTCACTTTCGCTTCCAACCTTTCCTCACGCGCACCAACTACCTCTTCTTCTCCGACCTCACCGAACCACAATTCCACGAATCTCTCACTCTTCTTCGCCGGAGCAAAATCTCCGTTACATCATCGCCGGCGCTCAAGCCGGTGAAATGCAGTAGATCCACGGAAGAAAAGCCGTGGAACGACGCTGAAACCGAAACCGTCGCGTCTGATTCCGATGAAGCTGTTGATGATGAATCAAACGGTCAAGCTCCGAGCAAAACTTCTTCAATAGAGTCTCCGAGGATTGCAACCACCTCTTCTGGAGATTCTCTATCGCTCGGAATTCGTGAACCTGTTTATGAAGTTGTAGAAGTGAAATCAGATGGGACAGTATCGACTAGAAAAATCAATAGAAGACAATTATTGAAGTCTAGTGGTCTTCGTCCACGGGACGTTAGAAGTGTGGATCCATCATTGTTTTTGACAAATTCAATGCCTTCTTTGCTGGTCCGTGAGTATGCTATACTTCTAAACTTGGGTTCACTACGAGCAATCGCAATGCAAGATTGTGTACTTATATTTGATTATAATCGTAAAGGAGGGCAAGCTTTTCTAGAGTCATTGCTGCCTCGGTTAAACCCCAAGAGCAACAATGGAGGGCCATCAATGCCATTTGAAATCGAGTGCTTAAGTGTAAAAGACGACGCAGAAGGATCTAAAGATGGTAACAATTCCATTGCAGAAGGCCAAGAAAAGTGTGGCCTTAAAAGTTGTCGAAGCAGCATTGCTTTCAAGAATACAACGTTTGGAGCGGAGACTGATGGACTTAGAACCTCGTGTGAGTATGGAAACACAGTTCAAGCTCTTCTTGAGGCCTTACCAAATCGGATAACTGGGGATATACTGGAGCAACTTCGTATTAGCAAACAAACTTTGGTTGAGTTAGGCTCAAGGGCAGGAGCTCTCAGGCAGATGCTGCTTGATCTTCTGGAGGACCCAGATGAAATACGGAGGATATGTATTATGGGAAGAAATTGTACAATAAATAAAGGAAACCATAATGTGGAATGCTCAGTGCCTTTAGACAAGCAGGTTGCTGAGGAGGAGGAGGAGGAAATTGAGATGCTTCTGGAAAATTATCTCCAAAGATGTGAATCTTGTCACGGTCAAGCTGAAAGGCTTCTTGATTCTGCAAGGGAAATGGAAGATTCTATAGCTGTCAGTTTAAGCTCACGGAGGCTTGAAGTTAGCAGGGTGGAACTGCTTCTCCAGGTTGGAACATTCTGTGTGGCAGTTGGTGCCCTTGTAGCAGGCATATTTGGCATGAACCTGAAGTCCTATCTTGAGGAACGTGTGTTTGCATTTTGGTTGACCACATCTGGGATTATTATTGGTGGCATTGTTGTTTTTTTTATTATGTATAACTACCTCAGAGCAAGGAAAATATTTTGA

Protein sequence

>Msa1433060

MALTLTSPHFRFQPFLTRTNYLFFSDLTEPQFHESLTLLRRSKISVTSSPALKPVKCSRSTEEKPWNDAETETVASDSDEAVDDESNGQAPSKTSSIESPRIATTSSGDSLSLGIREPVYEVVEVKSDGTVSTRKINRRQLLKSSGLRPRDVRSVDPSLFLTNSMPSLLVREYAILLNLGSLRAIAMQDCVLIFDYNRKGGQAFLESLLPRLNPKSNNGGPSMPFEIECLSVKDDAEGSKDGNNSIAEGQEKCGLKSCRSSIAFKNTTFGAETDGLRTSCEYGNTVQALLEALPNRITGDILEQLRISKQTLVELGSRAGALRQMLLDLLEDPDEIRRICIMGRNCTINKGNHNVECSVPLDKQVAEEEEEEIEMLLENYLQRCESCHGQAERLLDSAREMEDSIAVSLSSRRLEVSRVELLLQVGTFCVAVGALVAGIFGMNLKSYLEERVFAFWLTTSGIIIGGIVVFFIMYNYLRARKIF*