AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0417060


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0417060 MtrunA17_Chr3g0114351 98.858 438 5 0 1 438 1 438 0.0 858
Msa0417060 MtrunA17_Chr5g0437961 73.647 425 112 0 8 432 3 427 0.0 649
Msa0417060 MtrunA17_Chr5g0437951 54.691 437 185 4 12 436 11 446 6.79e-173 491
Msa0417060 MtrunA17_Chr7g0220531 47.430 428 219 1 10 431 29 456 3.09e-137 402
Msa0417060 MtrunA17_Chr8g0366021 46.763 417 219 1 25 438 48 464 1.44e-129 382
Msa0417060 MtrunA17_Chr6g0455911 44.394 437 233 4 10 438 20 454 1.05e-120 359
Msa0417060 MtrunA17_Chr6g0455951 42.466 438 242 4 9 438 24 459 4.25e-119 355
Msa0417060 MtrunA17_Chr6g0455981 42.523 428 237 3 10 429 22 448 4.86e-119 355
Msa0417060 MtrunA17_Chr6g0455941 43.750 416 231 2 25 438 48 462 6.96e-115 344
Msa0417060 MtrunA17_Chr2g0333321 39.815 432 251 5 10 438 62 487 1.32e-107 327
Msa0417060 MtrunA17_Chr8g0366001 45.896 268 142 1 174 438 4 271 6.11e-78 243
Msa0417060 MtrunA17_Chr6g0459871 40.824 267 155 2 174 438 50 315 7.51e-61 200
Msa0417060 MtrunA17_Chr3g0114341 77.982 109 24 0 4 112 2 110 7.08e-49 162
Msa0417060 MtrunA17_Chr8g0365971 46.296 162 86 1 25 186 52 212 1.37e-39 141
Msa0417060 MtrunA17_Chr8g0365991 50.467 107 53 0 25 131 48 154 4.45e-25 101
Msa0417060 MtrunA17_Chr4g0022261 21.759 432 297 13 14 436 124 523 5.46e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0417060 AT3G56200.1 59.314 408 166 0 25 432 24 431 4.08e-174 494
Msa0417060 AT2G40420.1 58.469 431 174 2 6 431 2 432 3.75e-171 487
Msa0417060 AT3G30390.1 45.872 436 230 1 2 431 15 450 3.21e-132 389
Msa0417060 AT3G30390.3 45.872 436 230 1 2 431 15 450 3.21e-132 389
Msa0417060 AT3G30390.2 45.872 436 230 1 2 431 15 450 3.21e-132 389
Msa0417060 AT5G38820.1 44.626 428 229 2 12 431 17 444 1.57e-128 379
Msa0417060 AT5G38820.3 44.626 428 229 2 12 431 17 444 1.57e-128 379
Msa0417060 AT5G38820.2 44.626 428 229 2 12 431 22 449 2.19e-128 379
Msa0417060 AT1G80510.1 40.460 435 245 6 10 438 62 488 1.44e-97 301
Msa0417060 AT2G39130.2 23.611 432 271 13 19 435 155 542 8.86e-11 64.3
Msa0417060 AT2G39130.1 23.611 432 271 13 19 435 155 542 8.86e-11 64.3

Find 121 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTTTACAATCGGTCTATT+TGG 0.154949 3_2:+64177826 Msa0417060:CDS
TGAAAGAAGTACCAAATATC+TGG 0.234058 3_2:-64178123 None:intergenic
GGTTCTAACCAATGATAATT+AGG 0.245044 3_2:-64176643 None:intergenic
GTGGCTAGCAGAGGCTTCTT+AGG 0.255194 3_2:-64178030 None:intergenic
TCTAATCGAGGAACCAGTTT+AGG 0.267712 3_2:-64177533 None:intergenic
TGGTACTTCTTTCAGTTTCT+AGG 0.268753 3_2:+64178132 Msa0417060:CDS
TCATTATCTTGTCAAATAAA+AGG 0.272418 3_2:+64178813 Msa0417060:three_prime_UTR
TCAAATCCGGCGGCGGTTCC+TGG 0.299360 3_2:+64176338 Msa0417060:CDS
CTATAGCAATCCCAGATATT+TGG 0.301975 3_2:+64178112 Msa0417060:CDS
GCATTTGTTGCCATTTGTTC+TGG 0.310819 3_2:+64177470 Msa0417060:CDS
AACAGTGGTTTGGGGTTCAT+TGG 0.328083 3_2:+64176991 Msa0417060:CDS
GGGGAGTTGGGGCGTGGAAG+GGG 0.330652 3_2:+64178525 Msa0417060:three_prime_UTR
CTAATCGAGGAACCAGTTTA+GGG 0.333126 3_2:-64177532 None:intergenic
GTGTTATAATAACAAACTTT+GGG 0.335417 3_2:+64176606 Msa0417060:CDS
TTACTTGCAGTACATCCTAT+TGG 0.338534 3_2:+64177733 Msa0417060:intron
TACTTGCAGTACATCCTATT+GGG 0.340851 3_2:+64177734 Msa0417060:intron
CTCAAAGAGAAATTTATAAG+AGG 0.349290 3_2:-64177982 None:intergenic
GGTTCTTGTTATGCTTCCTT+TGG 0.349741 3_2:+64177049 Msa0417060:CDS
CAGAAACGTGGGACAAAGTT+GGG 0.352434 3_2:+64178684 Msa0417060:three_prime_UTR
TGGTTTGGCTATTGTTGCTT+TGG 0.368599 3_2:+64177490 Msa0417060:CDS
GGTGTTATGAAGGAAGCTTT+TGG 0.378184 3_2:+64176554 Msa0417060:CDS
GCATTCACATTTCATTTCAA+TGG 0.380536 3_2:+64177608 Msa0417060:CDS
GTTCTCTTCCTAATTATCAT+TGG 0.381754 3_2:+64176635 Msa0417060:CDS
CTCCGGAATCATGTCAATTC+CGG 0.385246 3_2:+64176406 Msa0417060:CDS
TGTGTTATAATAACAAACTT+TGG 0.388848 3_2:+64176605 Msa0417060:CDS
AATGTCGCCACCAGCATAAT+CGG 0.388972 3_2:+64176383 Msa0417060:CDS
TGTTGCCATTTGTTCTGGTT+TGG 0.397590 3_2:+64177475 Msa0417060:CDS
TATTCCTGAACTGTACTTCA+AGG 0.402238 3_2:-64177429 None:intergenic
CGCCGGAATTGACATGATTC+CGG 0.403675 3_2:-64176408 None:intergenic
GCAGAGGCTTCTTAGGGAAT+AGG 0.417972 3_2:-64178023 None:intergenic
GGGTTCATTGGTGGAATTCA+AGG 0.420529 3_2:+64177003 Msa0417060:CDS
GATTGCTATAGCAGCAAGAT+AGG 0.434216 3_2:-64178100 None:intergenic
CCGGCGATTCTCAAAGTTCT+CGG 0.438035 3_2:+64176425 Msa0417060:CDS
CAGAATGCTGATTCTGCTGT+TGG 0.441483 3_2:+64177901 Msa0417060:CDS
GAATCCTTGAAGTACAGTTC+AGG 0.450089 3_2:+64177425 Msa0417060:intron
GCGGTTCCTGGTTCAATCCC+TGG 0.452034 3_2:+64176350 Msa0417060:CDS
GAGAGTTGAGAGAGGAAATG+TGG 0.458853 3_2:-64176247 None:intergenic
GCGACATTGAATACGGCGCC+AGG 0.467060 3_2:-64176368 None:intergenic
CTTGCAAGCTCAAACCCAAT+AGG 0.469781 3_2:-64177748 None:intergenic
TAAAAGGTCCCATGCGATGA+TGG 0.470794 3_2:+64178829 Msa0417060:three_prime_UTR
ACAAATCAAAGAATGATGTT+TGG 0.476934 3_2:-64177559 None:intergenic
AACCGCCGCCGGATTTGATC+CGG 0.483830 3_2:-64176333 None:intergenic
TACCTTAAAACAATAGTGCC+AGG 0.484684 3_2:-64178189 None:intergenic
AATAGCCAAACCAGAACAAA+TGG 0.490020 3_2:-64177480 None:intergenic
AGTGGTTTGGGGTTCATTGG+TGG 0.490922 3_2:+64176994 Msa0417060:CDS
TGGCTAGCAGAGGCTTCTTA+GGG 0.492601 3_2:-64178029 None:intergenic
GTGAATGCTGTGACTACAAC+AGG 0.493679 3_2:-64177593 None:intergenic
GCTGTAGTCTACTTTACAAT+CGG 0.495082 3_2:+64177817 Msa0417060:CDS
GGTGTAACCACGACGTACTC+TGG 0.498670 3_2:+64176533 Msa0417060:CDS
ATCAACAACAGCACTATGCC+TGG 0.499325 3_2:+64178155 Msa0417060:CDS
AAGTGGAGGTGAAGTGCACT+TGG 0.500293 3_2:+64176959 Msa0417060:CDS
ATAAGAATCAAGGCGAAAGA+AGG 0.506142 3_2:-64176455 None:intergenic
TAAAGCATTGTATATGTTGG+TGG 0.512729 3_2:-64178426 None:intergenic
TCTCTTGACCGGATCAAATC+CGG 0.513994 3_2:+64176325 Msa0417060:CDS
GCTGGTGGCGACATTGAATA+CGG 0.515321 3_2:-64176375 None:intergenic
TCTAATGACAGGGATGCTCT+TGG 0.515706 3_2:+64178326 Msa0417060:intron
GTCAACGTCCCTCTCTTGAC+CGG 0.521264 3_2:+64176314 Msa0417060:CDS
GAGAAAATCAACAGAAACTT+CGG 0.523044 3_2:-64176492 None:intergenic
TAAGTAGCAAGTCATAATGT+TGG 0.523113 3_2:+64178447 Msa0417060:exon
GAAAGAAGTACCAAATATCT+GGG 0.527104 3_2:-64178122 None:intergenic
CATTTAAACAATAACTAGCT+AGG 0.528108 3_2:-64178757 None:intergenic
ACAGAAACGTGGGACAAAGT+TGG 0.528194 3_2:+64178683 Msa0417060:three_prime_UTR
GACCGGATCAAATCCGGCGG+CGG 0.531549 3_2:+64176331 Msa0417060:CDS
GCTATTGTTGCTTTGGTGCA+AGG 0.533508 3_2:+64177497 Msa0417060:CDS
AACAGAAACTTCGGCGAGCA+CGG 0.535273 3_2:-64176483 None:intergenic
GAATAGGAGTTCATCAATGT+TGG 0.539647 3_2:-64178007 None:intergenic
TTCTCATTACCATCATCGCA+TGG 0.540968 3_2:-64178838 None:intergenic
GTGTTGAATCTCCAAACAAA+AGG 0.542964 3_2:-64177852 None:intergenic
TCAAAGAGAAATTTATAAGA+GGG 0.545469 3_2:-64177981 None:intergenic
GACGTACTCTGGTGTTATGA+AGG 0.546221 3_2:+64176544 Msa0417060:CDS
ACAATAACTAGCTAGGTTCA+CGG 0.546846 3_2:-64178750 None:intergenic
TTGTTGTCTGTGGCTAGCAG+AGG 0.547461 3_2:-64178039 None:intergenic
CAAGAGAGGGACGTTGACTC+CGG 0.550502 3_2:-64176309 None:intergenic
GCCACCAGCATAATCGGCTC+CGG 0.553474 3_2:+64176389 Msa0417060:CDS
TGCCAGGGAAAATAAAAGCC+AGG 0.554102 3_2:-64178173 None:intergenic
ATTGAACCAGGAACCGCCGC+CGG 0.560640 3_2:-64176344 None:intergenic
TGTTATAATAACAAACTTTG+GGG 0.563026 3_2:+64176607 Msa0417060:CDS
ACAGGACAAAATTATAGCAC+TGG 0.566982 3_2:+64178361 Msa0417060:CDS
GATTCCGGAGCCGATTATGC+TGG 0.567198 3_2:-64176393 None:intergenic
ATGTCACCAACACCGTCTGC+CGG 0.570180 3_2:+64176290 Msa0417060:CDS
CACAAATCTCTTGTTGTCTG+TGG 0.572225 3_2:-64178049 None:intergenic
CACGGCGACGATAAGAATCA+AGG 0.576008 3_2:-64176465 None:intergenic
AAATACCAACAAAATGAGCC+TGG 0.577282 3_2:-64178556 None:intergenic
GGTTCATTGGTGGAATTCAA+GGG 0.580061 3_2:+64177004 Msa0417060:CDS
CTATGCACTCCACATTATGT+TGG 0.580938 3_2:+64177954 Msa0417060:CDS
CCGAGAACTTTGAGAATCGC+CGG 0.581794 3_2:-64176425 None:intergenic
AGACGGTGTTGGTGACATCC+CGG 0.584616 3_2:-64176285 None:intergenic
TTGACTCCGGCAGACGGTGT+TGG 0.599042 3_2:-64176296 None:intergenic
ACTTAAAGCATTGTATATGT+TGG 0.600971 3_2:-64178429 None:intergenic
GAGGGAATACCAACATAATG+TGG 0.601359 3_2:-64177963 None:intergenic
TTTGTGGATTGCACGACAGG+GGG 0.601459 3_2:-64178861 None:intergenic
TCTTGGCATATCAACAAGAC+AGG 0.602838 3_2:+64178343 Msa0417060:CDS
GATTTGATCCGGTCAAGAGA+GGG 0.609106 3_2:-64176322 None:intergenic
TTGGTCTTGTACAAACGTGT+AGG 0.611958 3_2:+64177068 Msa0417060:CDS
ACCTTAAAACAATAGTGCCA+GGG 0.615343 3_2:-64178188 None:intergenic
TCCGGAGCCGATTATGCTGG+TGG 0.619780 3_2:-64176390 None:intergenic
GGATTTGATCCGGTCAAGAG+AGG 0.624870 3_2:-64176323 None:intergenic
TAATCGAGGAACCAGTTTAG+GGG 0.626450 3_2:-64177531 None:intergenic
TCTCATTACCATCATCGCAT+GGG 0.626522 3_2:-64178837 None:intergenic
GGGACGTTGACTCCGGCAGA+CGG 0.628323 3_2:-64176302 None:intergenic
ACGGCGCCAGGGATTGAACC+AGG 0.629078 3_2:-64176356 None:intergenic
AATATCAACTCTTCTTGCTG+TGG 0.629266 3_2:+64177448 Msa0417060:CDS
CGACATTGAATACGGCGCCA+GGG 0.630121 3_2:-64176367 None:intergenic
TTGAGCGCTTAAAGCTCCAA+CGG 0.631364 3_2:-64176579 None:intergenic
TTATCTGGAAAGGAAAGTGG+AGG 0.631552 3_2:+64176945 Msa0417060:CDS
AGAAACGTGGGACAAAGTTG+GGG 0.639459 3_2:+64178685 Msa0417060:three_prime_UTR
TCAAAAGTCTACAGAAACGT+GGG 0.641726 3_2:+64178673 Msa0417060:three_prime_UTR
AGAGTACGTCGTGGTTACAC+CGG 0.641853 3_2:-64176531 None:intergenic
AAGAAAATCAAAGAAACACA+AGG 0.644399 3_2:-64178581 None:intergenic
GATGTTTGGTAATCTAATCG+AGG 0.648059 3_2:-64177545 None:intergenic
TTCAAAAGTCTACAGAAACG+TGG 0.649590 3_2:+64178672 Msa0417060:three_prime_UTR
AGTGGAGGTGAAGTGCACTT+GGG 0.652737 3_2:+64176960 Msa0417060:CDS
ACACGTTTGTACAAGACCAA+AGG 0.661754 3_2:-64177065 None:intergenic
GTTATAATAACAAACTTTGG+GGG 0.675510 3_2:+64176608 Msa0417060:CDS
AGAAAATCAAAGAAACACAA+GGG 0.678637 3_2:-64178580 None:intergenic
AGGAAGCATAACAAGAACCA+AGG 0.686365 3_2:-64177045 None:intergenic
TCCATCTCATATGAAAACAG+CGG 0.700147 3_2:+64177771 Msa0417060:CDS
TATTTGACAAGATAATGACA+AGG 0.702517 3_2:-64178808 None:intergenic
CTTGACCGGATCAAATCCGG+CGG 0.711799 3_2:+64176328 Msa0417060:CDS
CATAACACCAGAGTACGTCG+TGG 0.777944 3_2:-64176540 None:intergenic
CGGTGTTGGTGACATCCCGG+CGG 0.797506 3_2:-64176282 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTTAATTATTATTCTATTAA+AGG + chr3_2:64178231-64178250 Msa0417060:intron 10.0%
!! ATAAAAGAAACAGATTAAAT+TGG - chr3_2:64176667-64176686 None:intergenic 15.0%
!! AAACAAAAAATTAATCCAAA+AGG - chr3_2:64176736-64176755 None:intergenic 15.0%
!! TATTTATGAAAGTTTGAATT+TGG + chr3_2:64176762-64176781 Msa0417060:intron 15.0%
!! ATTTATGAAAGTTTGAATTT+GGG + chr3_2:64176763-64176782 Msa0417060:intron 15.0%
!!! ATTATTTGTTCCTTTTTTAA+GGG + chr3_2:64177647-64177666 Msa0417060:intron 15.0%
!! ATTAGAAACAAAGAAAATTT+AGG - chr3_2:64178312-64178331 None:intergenic 15.0%
!! TGTGTTATAATAACAAACTT+TGG + chr3_2:64176605-64176624 Msa0417060:CDS 20.0%
!! GTGTTATAATAACAAACTTT+GGG + chr3_2:64176606-64176625 Msa0417060:CDS 20.0%
!! TGTTATAATAACAAACTTTG+GGG + chr3_2:64176607-64176626 Msa0417060:CDS 20.0%
!!! ATCTTTTATCAAAATCACAT+CGG - chr3_2:64177243-64177262 None:intergenic 20.0%
!! TTGATAAAAGATATACTATG+AGG + chr3_2:64177251-64177270 Msa0417060:intron 20.0%
!!! ACTTTTTTCGTTTTGAATTA+AGG + chr3_2:64177334-64177353 Msa0417060:intron 20.0%
!!! CATTATTTGTTCCTTTTTTA+AGG + chr3_2:64177646-64177665 Msa0417060:intron 20.0%
!! TCAAAGAGAAATTTATAAGA+GGG - chr3_2:64177984-64178003 None:intergenic 20.0%
!!! TCTACTACAAAAAGTTTTAT+TGG + chr3_2:64178502-64178521 Msa0417060:three_prime_UTR 20.0%
!!! CTACTACAAAAAGTTTTATT+GGG + chr3_2:64178503-64178522 Msa0417060:three_prime_UTR 20.0%
!!! TACTACAAAAAGTTTTATTG+GGG + chr3_2:64178504-64178523 Msa0417060:three_prime_UTR 20.0%
!! TCATTATCTTGTCAAATAAA+AGG + chr3_2:64178813-64178832 Msa0417060:three_prime_UTR 20.0%
! GTTATAATAACAAACTTTGG+GGG + chr3_2:64176608-64176627 Msa0417060:CDS 25.0%
! AGCTCTCTTAATTAATGATT+TGG - chr3_2:64176703-64176722 None:intergenic 25.0%
!!! AAGTTTTGCACTTTAAAGTT+TGG + chr3_2:64176820-64176839 Msa0417060:intron 25.0%
!! AAAGATAGGTTTTTGAATGA+TGG + chr3_2:64176865-64176884 Msa0417060:intron 25.0%
!! AAGATAGGTTTTTGAATGAT+GGG + chr3_2:64176866-64176885 Msa0417060:intron 25.0%
! CACTAAGAATTAAGATATCA+TGG - chr3_2:64177113-64177132 None:intergenic 25.0%
! TTTGAATTAAGGAGATTAAG+TGG + chr3_2:64177345-64177364 Msa0417060:intron 25.0%
! ACAAATCAAAGAATGATGTT+TGG - chr3_2:64177562-64177581 None:intergenic 25.0%
! CTCAAAGAGAAATTTATAAG+AGG - chr3_2:64177985-64178004 None:intergenic 25.0%
!!! TTTTCTTTGTTTCTAATGAC+AGG + chr3_2:64178315-64178334 Msa0417060:intron 25.0%
!!! TTTCTTTGTTTCTAATGACA+GGG + chr3_2:64178316-64178335 Msa0417060:intron 25.0%
!!! ACTTAAAGCATTGTATATGT+TGG - chr3_2:64178432-64178451 None:intergenic 25.0%
!!! ACTACAAAAAGTTTTATTGG+GGG + chr3_2:64178505-64178524 Msa0417060:three_prime_UTR 25.0%
! AGAAAATCAAAGAAACACAA+GGG - chr3_2:64178583-64178602 None:intergenic 25.0%
! AAGAAAATCAAAGAAACACA+AGG - chr3_2:64178584-64178603 None:intergenic 25.0%
! CATTTAAACAATAACTAGCT+AGG - chr3_2:64178760-64178779 None:intergenic 25.0%
! TATTTGACAAGATAATGACA+AGG - chr3_2:64178811-64178830 None:intergenic 25.0%
!!! ATTTTTTAGAGAGTTGAGAG+AGG - chr3_2:64176258-64176277 None:intergenic 30.0%
GAGAAAATCAACAGAAACTT+CGG - chr3_2:64176495-64176514 None:intergenic 30.0%
GTTCTCTTCCTAATTATCAT+TGG + chr3_2:64176635-64176654 Msa0417060:CDS 30.0%
! GGTTCTAACCAATGATAATT+AGG - chr3_2:64176646-64176665 None:intergenic 30.0%
! GAAAGTTTGAATTTGGGATT+TGG + chr3_2:64176769-64176788 Msa0417060:intron 30.0%
GTTTGTGATGTTGAAAAGAT+AGG + chr3_2:64176851-64176870 Msa0417060:intron 30.0%
CTTAATTCTTAGTGCTTGTT+TGG + chr3_2:64177119-64177138 Msa0417060:intron 30.0%
ATGAGGTTTCATCAAAATCA+TGG + chr3_2:64177268-64177287 Msa0417060:intron 30.0%
! AAACGAAAAAAGTGCATGTT+CGG - chr3_2:64177327-64177346 None:intergenic 30.0%
GCATTCACATTTCATTTCAA+TGG + chr3_2:64177608-64177627 Msa0417060:CDS 30.0%
TACTTTACAATCGGTCTATT+TGG + chr3_2:64177826-64177845 Msa0417060:CDS 30.0%
!! GAAAGAAGTACCAAATATCT+GGG - chr3_2:64178125-64178144 None:intergenic 30.0%
!! TGAAAGAAGTACCAAATATC+TGG - chr3_2:64178126-64178145 None:intergenic 30.0%
TTCTATTAAAGGTGACGAAT+TGG + chr3_2:64178242-64178261 Msa0417060:intron 30.0%
ACGAATTGGAAACAGAATAA+AGG + chr3_2:64178256-64178275 Msa0417060:intron 30.0%
AATCATGAATGAATAAAGCC+AGG + chr3_2:64178284-64178303 Msa0417060:intron 30.0%
!! TAAAGCATTGTATATGTTGG+TGG - chr3_2:64178429-64178448 None:intergenic 30.0%
TAAGTAGCAAGTCATAATGT+TGG + chr3_2:64178447-64178466 Msa0417060:exon 30.0%
!!! CTACAAAAAGTTTTATTGGG+GGG + chr3_2:64178506-64178525 Msa0417060:three_prime_UTR 30.0%
! CTTGCAAGATTTTTACAACA+AGG - chr3_2:64178612-64178631 None:intergenic 30.0%
! CTTGTTGTAAAAATCTTGCA+AGG + chr3_2:64178610-64178629 Msa0417060:three_prime_UTR 30.0%
ATAAGAATCAAGGCGAAAGA+AGG - chr3_2:64176458-64176477 None:intergenic 35.0%
! GAGCTAAATATGACACCTTT+TGG + chr3_2:64176718-64176737 Msa0417060:intron 35.0%
! GTTTTATCTGGAAAGGAAAG+TGG + chr3_2:64176942-64176961 Msa0417060:CDS 35.0%
TTAGTGCTTGTTTGGTATGA+CGG + chr3_2:64177127-64177146 Msa0417060:intron 35.0%
TACGTGTATGTTTGGTATCA+CGG - chr3_2:64177178-64177197 None:intergenic 35.0%
TATTCCTGAACTGTACTTCA+AGG - chr3_2:64177432-64177451 None:intergenic 35.0%
AATATCAACTCTTCTTGCTG+TGG + chr3_2:64177448-64177467 Msa0417060:CDS 35.0%
AATAGCCAAACCAGAACAAA+TGG - chr3_2:64177483-64177502 None:intergenic 35.0%
AAAAACACAAACCCCTAAAC+TGG + chr3_2:64177520-64177539 Msa0417060:CDS 35.0%
! GATGTTTGGTAATCTAATCG+AGG - chr3_2:64177548-64177567 None:intergenic 35.0%
TCTAGCAACACCCTTAAAAA+AGG - chr3_2:64177660-64177679 None:intergenic 35.0%
TTACTTGCAGTACATCCTAT+TGG + chr3_2:64177733-64177752 Msa0417060:intron 35.0%
TACTTGCAGTACATCCTATT+GGG + chr3_2:64177734-64177753 Msa0417060:intron 35.0%
TCCATCTCATATGAAAACAG+CGG + chr3_2:64177771-64177790 Msa0417060:CDS 35.0%
GCTGTAGTCTACTTTACAAT+CGG + chr3_2:64177817-64177836 Msa0417060:CDS 35.0%
! CTATTTGGCTACCTTTTGTT+TGG + chr3_2:64177841-64177860 Msa0417060:CDS 35.0%
GTGTTGAATCTCCAAACAAA+AGG - chr3_2:64177855-64177874 None:intergenic 35.0%
GAATAGGAGTTCATCAATGT+TGG - chr3_2:64178010-64178029 None:intergenic 35.0%
CTATAGCAATCCCAGATATT+TGG + chr3_2:64178112-64178131 Msa0417060:CDS 35.0%
TGGTACTTCTTTCAGTTTCT+AGG + chr3_2:64178132-64178151 Msa0417060:CDS 35.0%
ACCTTAAAACAATAGTGCCA+GGG - chr3_2:64178191-64178210 None:intergenic 35.0%
TACCTTAAAACAATAGTGCC+AGG - chr3_2:64178192-64178211 None:intergenic 35.0%
ACAAAGAAAATTTAGGAGCC+TGG - chr3_2:64178305-64178324 None:intergenic 35.0%
ACAGGACAAAATTATAGCAC+TGG + chr3_2:64178361-64178380 Msa0417060:CDS 35.0%
! AAATTCCAGGCTCATTTTGT+TGG + chr3_2:64178551-64178570 Msa0417060:three_prime_UTR 35.0%
AAATACCAACAAAATGAGCC+TGG - chr3_2:64178559-64178578 None:intergenic 35.0%
TTCAAAAGTCTACAGAAACG+TGG + chr3_2:64178672-64178691 Msa0417060:three_prime_UTR 35.0%
TCAAAAGTCTACAGAAACGT+GGG + chr3_2:64178673-64178692 Msa0417060:three_prime_UTR 35.0%
ACAATAACTAGCTAGGTTCA+CGG - chr3_2:64178753-64178772 None:intergenic 35.0%
! TCTCTAAAAAATCTCACCGC+CGG + chr3_2:64176266-64176285 Msa0417060:five_prime_UTR 40.0%
!! GGTGTTATGAAGGAAGCTTT+TGG + chr3_2:64176554-64176573 Msa0417060:CDS 40.0%
! TTGAGCAAAACCAAGTTGAG+TGG + chr3_2:64176795-64176814 Msa0417060:intron 40.0%
CAAAACTTCACCACTCAACT+TGG - chr3_2:64176808-64176827 None:intergenic 40.0%
!! TTGTTGCTGTTTGTGTGTGA+TGG + chr3_2:64176906-64176925 Msa0417060:intron 40.0%
! TTTGTGTGTGATGGAACAAC+AGG + chr3_2:64176915-64176934 Msa0417060:intron 40.0%
! TTGTGTGTGATGGAACAACA+GGG + chr3_2:64176916-64176935 Msa0417060:intron 40.0%
! ACAACAGGGGATGTTTTATC+TGG + chr3_2:64176930-64176949 Msa0417060:intron 40.0%
! AGGGGATGTTTTATCTGGAA+AGG + chr3_2:64176935-64176954 Msa0417060:intron 40.0%
TTATCTGGAAAGGAAAGTGG+AGG + chr3_2:64176945-64176964 Msa0417060:CDS 40.0%
! GACTTTTGCAACAGTGGTTT+GGG + chr3_2:64176982-64177001 Msa0417060:CDS 40.0%
! ACTTTTGCAACAGTGGTTTG+GGG + chr3_2:64176983-64177002 Msa0417060:CDS 40.0%
GGTTCATTGGTGGAATTCAA+GGG + chr3_2:64177004-64177023 Msa0417060:CDS 40.0%
! AGTTGCTCTTTTCATCACCT+TGG + chr3_2:64177028-64177047 Msa0417060:CDS 40.0%
! AGGAAGCATAACAAGAACCA+AGG - chr3_2:64177048-64177067 None:intergenic 40.0%
! GGTTCTTGTTATGCTTCCTT+TGG + chr3_2:64177049-64177068 Msa0417060:CDS 40.0%
ACACGTTTGTACAAGACCAA+AGG - chr3_2:64177068-64177087 None:intergenic 40.0%
!! TTGGTCTTGTACAAACGTGT+AGG + chr3_2:64177068-64177087 Msa0417060:CDS 40.0%
TAGTGCTTGTTTGGTATGAC+GGG + chr3_2:64177128-64177147 Msa0417060:intron 40.0%
! ACATGGACTACGTGTATGTT+TGG - chr3_2:64177186-64177205 None:intergenic 40.0%
ACATACACGTAGTCCATGTT+CGG + chr3_2:64177187-64177206 Msa0417060:intron 40.0%
!!! TCGGATTGGCAGTGAATTTT+CGG + chr3_2:64177206-64177225 Msa0417060:intron 40.0%
GAATCCTTGAAGTACAGTTC+AGG + chr3_2:64177425-64177444 Msa0417060:intron 40.0%
! GCATTTGTTGCCATTTGTTC+TGG + chr3_2:64177470-64177489 Msa0417060:CDS 40.0%
! TGTTGCCATTTGTTCTGGTT+TGG + chr3_2:64177475-64177494 Msa0417060:CDS 40.0%
! TGGTTTGGCTATTGTTGCTT+TGG + chr3_2:64177490-64177509 Msa0417060:CDS 40.0%
TAATCGAGGAACCAGTTTAG+GGG - chr3_2:64177534-64177553 None:intergenic 40.0%
CTAATCGAGGAACCAGTTTA+GGG - chr3_2:64177535-64177554 None:intergenic 40.0%
TCTAATCGAGGAACCAGTTT+AGG - chr3_2:64177536-64177555 None:intergenic 40.0%
!! ACCGCTGTTTTCATATGAGA+TGG - chr3_2:64177775-64177794 None:intergenic 40.0%
CTATGCACTCCACATTATGT+TGG + chr3_2:64177954-64177973 Msa0417060:CDS 40.0%
GAGGGAATACCAACATAATG+TGG - chr3_2:64177966-64177985 None:intergenic 40.0%
! CACAAATCTCTTGTTGTCTG+TGG - chr3_2:64178052-64178071 None:intergenic 40.0%
GATTGCTATAGCAGCAAGAT+AGG - chr3_2:64178103-64178122 None:intergenic 40.0%
!! TCCCTGGCACTATTGTTTTA+AGG + chr3_2:64178187-64178206 Msa0417060:CDS 40.0%
TCTTGGCATATCAACAAGAC+AGG + chr3_2:64178343-64178362 Msa0417060:CDS 40.0%
!!! AAAGTTTTATTGGGGGGAGT+TGG + chr3_2:64178512-64178531 Msa0417060:three_prime_UTR 40.0%
!!! AAGTTTTATTGGGGGGAGTT+GGG + chr3_2:64178513-64178532 Msa0417060:three_prime_UTR 40.0%
TCTCATTACCATCATCGCAT+GGG - chr3_2:64178840-64178859 None:intergenic 40.0%
TTCTCATTACCATCATCGCA+TGG - chr3_2:64178841-64178860 None:intergenic 40.0%
GAGAGTTGAGAGAGGAAATG+TGG - chr3_2:64176250-64176269 None:intergenic 45.0%
! CTCTAAAAAATCTCACCGCC+GGG + chr3_2:64176267-64176286 Msa0417060:five_prime_UTR 45.0%
GATTTGATCCGGTCAAGAGA+GGG - chr3_2:64176325-64176344 None:intergenic 45.0%
TCTCTTGACCGGATCAAATC+CGG + chr3_2:64176325-64176344 Msa0417060:CDS 45.0%
AATGTCGCCACCAGCATAAT+CGG + chr3_2:64176383-64176402 Msa0417060:CDS 45.0%
CTCCGGAATCATGTCAATTC+CGG + chr3_2:64176406-64176425 Msa0417060:CDS 45.0%
! CTCATGCGTTTTACACATGC+CGG + chr3_2:64176512-64176531 Msa0417060:CDS 45.0%
!! GACGTACTCTGGTGTTATGA+AGG + chr3_2:64176544-64176563 Msa0417060:CDS 45.0%
!!! AAGGAAGCTTTTGGTTCCGT+TGG + chr3_2:64176563-64176582 Msa0417060:CDS 45.0%
TTGAGCGCTTAAAGCTCCAA+CGG - chr3_2:64176582-64176601 None:intergenic 45.0%
! TGTGTGTGATGGAACAACAG+GGG + chr3_2:64176917-64176936 Msa0417060:intron 45.0%
! ACTTGGGACTTTTGCAACAG+TGG + chr3_2:64176976-64176995 Msa0417060:CDS 45.0%
! GGACTTTTGCAACAGTGGTT+TGG + chr3_2:64176981-64177000 Msa0417060:CDS 45.0%
! AACAGTGGTTTGGGGTTCAT+TGG + chr3_2:64176991-64177010 Msa0417060:CDS 45.0%
GGGTTCATTGGTGGAATTCA+AGG + chr3_2:64177003-64177022 Msa0417060:CDS 45.0%
!! TTTGGTATGACGGGCTTTGT+CGG + chr3_2:64177137-64177156 Msa0417060:intron 45.0%
ATTCACTGCCAATCCGAACA+TGG - chr3_2:64177203-64177222 None:intergenic 45.0%
!! GCTATTGTTGCTTTGGTGCA+AGG + chr3_2:64177497-64177516 Msa0417060:CDS 45.0%
GTGAATGCTGTGACTACAAC+AGG - chr3_2:64177596-64177615 None:intergenic 45.0%
CTTGCAAGCTCAAACCCAAT+AGG - chr3_2:64177751-64177770 None:intergenic 45.0%
!! CAGAATGCTGATTCTGCTGT+TGG + chr3_2:64177901-64177920 Msa0417060:CDS 45.0%
ATCAACAACAGCACTATGCC+TGG + chr3_2:64178155-64178174 Msa0417060:CDS 45.0%
!!! TGCCTGGCTTTTATTTTCCC+TGG + chr3_2:64178171-64178190 Msa0417060:CDS 45.0%
TGCCAGGGAAAATAAAAGCC+AGG - chr3_2:64178176-64178195 None:intergenic 45.0%
TCTAATGACAGGGATGCTCT+TGG + chr3_2:64178326-64178345 Msa0417060:intron 45.0%
!!! AGTTTTATTGGGGGGAGTTG+GGG + chr3_2:64178514-64178533 Msa0417060:three_prime_UTR 45.0%
ACAGAAACGTGGGACAAAGT+TGG + chr3_2:64178683-64178702 Msa0417060:three_prime_UTR 45.0%
CAGAAACGTGGGACAAAGTT+GGG + chr3_2:64178684-64178703 Msa0417060:three_prime_UTR 45.0%
AGAAACGTGGGACAAAGTTG+GGG + chr3_2:64178685-64178704 Msa0417060:three_prime_UTR 45.0%
TAAAAGGTCCCATGCGATGA+TGG + chr3_2:64178829-64178848 Msa0417060:three_prime_UTR 45.0%
GGATTTGATCCGGTCAAGAG+AGG - chr3_2:64176326-64176345 None:intergenic 50.0%
! GCTGGTGGCGACATTGAATA+CGG - chr3_2:64176378-64176397 None:intergenic 50.0%
CGCCGGAATTGACATGATTC+CGG - chr3_2:64176411-64176430 None:intergenic 50.0%
! CCGAGAACTTTGAGAATCGC+CGG - chr3_2:64176428-64176447 None:intergenic 50.0%
CCGGCGATTCTCAAAGTTCT+CGG + chr3_2:64176425-64176444 Msa0417060:CDS 50.0%
CACGGCGACGATAAGAATCA+AGG - chr3_2:64176468-64176487 None:intergenic 50.0%
AACAGAAACTTCGGCGAGCA+CGG - chr3_2:64176486-64176505 None:intergenic 50.0%
AGAGTACGTCGTGGTTACAC+CGG - chr3_2:64176534-64176553 None:intergenic 50.0%
CATAACACCAGAGTACGTCG+TGG - chr3_2:64176543-64176562 None:intergenic 50.0%
AAGTGGAGGTGAAGTGCACT+TGG + chr3_2:64176959-64176978 Msa0417060:CDS 50.0%
AGTGGAGGTGAAGTGCACTT+GGG + chr3_2:64176960-64176979 Msa0417060:CDS 50.0%
! AGTGGTTTGGGGTTCATTGG+TGG + chr3_2:64176994-64177013 Msa0417060:CDS 50.0%
CACGTAGTCCATGTTCGGAT+TGG + chr3_2:64177192-64177211 Msa0417060:intron 50.0%
GCAGAGGCTTCTTAGGGAAT+AGG - chr3_2:64178026-64178045 None:intergenic 50.0%
TGGCTAGCAGAGGCTTCTTA+GGG - chr3_2:64178032-64178051 None:intergenic 50.0%
TTGTTGTCTGTGGCTAGCAG+AGG - chr3_2:64178042-64178061 None:intergenic 50.0%
GTGGAAGGGGCAAAAATTCC+AGG + chr3_2:64178538-64178557 Msa0417060:three_prime_UTR 50.0%
!! AGACGGTGTTGGTGACATCC+CGG - chr3_2:64176288-64176307 None:intergenic 55.0%
ATGTCACCAACACCGTCTGC+CGG + chr3_2:64176290-64176309 Msa0417060:CDS 55.0%
!! CAAGAGAGGGACGTTGACTC+CGG - chr3_2:64176312-64176331 None:intergenic 55.0%
GTCAACGTCCCTCTCTTGAC+CGG + chr3_2:64176314-64176333 Msa0417060:CDS 55.0%
CTTGACCGGATCAAATCCGG+CGG + chr3_2:64176328-64176347 Msa0417060:CDS 55.0%
CGACATTGAATACGGCGCCA+GGG - chr3_2:64176370-64176389 None:intergenic 55.0%
GATTCCGGAGCCGATTATGC+TGG - chr3_2:64176396-64176415 None:intergenic 55.0%
GGTGTAACCACGACGTACTC+TGG + chr3_2:64176533-64176552 Msa0417060:CDS 55.0%
GTGGCTAGCAGAGGCTTCTT+AGG - chr3_2:64178033-64178052 None:intergenic 55.0%
TTGACTCCGGCAGACGGTGT+TGG - chr3_2:64176299-64176318 None:intergenic 60.0%
AACCGCCGCCGGATTTGATC+CGG - chr3_2:64176336-64176355 None:intergenic 60.0%
ATTGAACCAGGAACCGCCGC+CGG - chr3_2:64176347-64176366 None:intergenic 60.0%
GCGGTTCCTGGTTCAATCCC+TGG + chr3_2:64176350-64176369 Msa0417060:CDS 60.0%
GCGACATTGAATACGGCGCC+AGG - chr3_2:64176371-64176390 None:intergenic 60.0%
! GCCACCAGCATAATCGGCTC+CGG + chr3_2:64176389-64176408 Msa0417060:CDS 60.0%
TCCGGAGCCGATTATGCTGG+TGG - chr3_2:64176393-64176412 None:intergenic 60.0%
!! CGGTGTTGGTGACATCCCGG+CGG - chr3_2:64176285-64176304 None:intergenic 65.0%
!! GGGACGTTGACTCCGGCAGA+CGG - chr3_2:64176305-64176324 None:intergenic 65.0%
GACCGGATCAAATCCGGCGG+CGG + chr3_2:64176331-64176350 Msa0417060:CDS 65.0%
TCAAATCCGGCGGCGGTTCC+TGG + chr3_2:64176338-64176357 Msa0417060:CDS 65.0%
ACGGCGCCAGGGATTGAACC+AGG - chr3_2:64176359-64176378 None:intergenic 65.0%
TATTGGGGGGAGTTGGGGCG+TGG + chr3_2:64178519-64178538 Msa0417060:three_prime_UTR 65.0%
GGGGGAGTTGGGGCGTGGAA+GGG + chr3_2:64178524-64178543 Msa0417060:three_prime_UTR 70.0%
GGGGAGTTGGGGCGTGGAAG+GGG + chr3_2:64178525-64178544 Msa0417060:three_prime_UTR 70.0%
GGGGGGAGTTGGGGCGTGGA+AGG + chr3_2:64178523-64178542 Msa0417060:three_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 64176206 64178874 64176206 ID=Msa0417060;Name=Msa0417060
chr3_2 mRNA 64176206 64178874 64176206 ID=Msa0417060-mRNA-1;Parent=Msa0417060;Name=Msa0417060-mRNA-1;_AED=0.20;_eAED=0.20;_QI=84|1|1|1|0.8|0.66|6|391|438
chr3_2 exon 64176206 64176656 64176206 ID=Msa0417060-mRNA-1:exon:14115;Parent=Msa0417060-mRNA-1
chr3_2 exon 64176937 64177089 64176937 ID=Msa0417060-mRNA-1:exon:14116;Parent=Msa0417060-mRNA-1
chr3_2 exon 64177426 64177629 64177426 ID=Msa0417060-mRNA-1:exon:14117;Parent=Msa0417060-mRNA-1
chr3_2 exon 64177743 64178208 64177743 ID=Msa0417060-mRNA-1:exon:14118;Parent=Msa0417060-mRNA-1
chr3_2 exon 64178337 64178785 64178337 ID=Msa0417060-mRNA-1:exon:14119;Parent=Msa0417060-mRNA-1
chr3_2 exon 64178806 64178874 64178806 ID=Msa0417060-mRNA-1:exon:14120;Parent=Msa0417060-mRNA-1
chr3_2 five_prime_UTR 64176206 64176289 64176206 ID=Msa0417060-mRNA-1:five_prime_utr;Parent=Msa0417060-mRNA-1
chr3_2 CDS 64176290 64176656 64176290 ID=Msa0417060-mRNA-1:cds;Parent=Msa0417060-mRNA-1
chr3_2 CDS 64176937 64177089 64176937 ID=Msa0417060-mRNA-1:cds;Parent=Msa0417060-mRNA-1
chr3_2 CDS 64177426 64177629 64177426 ID=Msa0417060-mRNA-1:cds;Parent=Msa0417060-mRNA-1
chr3_2 CDS 64177743 64178208 64177743 ID=Msa0417060-mRNA-1:cds;Parent=Msa0417060-mRNA-1
chr3_2 CDS 64178337 64178463 64178337 ID=Msa0417060-mRNA-1:cds;Parent=Msa0417060-mRNA-1
chr3_2 three_prime_UTR 64178464 64178785 64178464 ID=Msa0417060-mRNA-1:three_prime_utr;Parent=Msa0417060-mRNA-1
chr3_2 three_prime_UTR 64178806 64178874 64178806 ID=Msa0417060-mRNA-1:three_prime_utr;Parent=Msa0417060-mRNA-1
Gene Sequence

>Msa0417060

ATGTCACCAACACCGTCTGCCGGAGTCAACGTCCCTCTCTTGACCGGATCAAATCCGGCGGCGGTTCCTGGTTCAATCCCTGGCGCCGTATTCAATGTCGCCACCAGCATAATCGGCTCCGGAATCATGTCAATTCCGGCGATTCTCAAAGTTCTCGGCGTGCTTCCTTCTTTCGCCTTGATTCTTATCGTCGCCGTGCTCGCCGAAGTTTCTGTTGATTTTCTCATGCGTTTTACACATGCCGGTGTAACCACGACGTACTCTGGTGTTATGAAGGAAGCTTTTGGTTCCGTTGGAGCTTTAAGCGCTCAAGTTTGTGTTATAATAACAAACTTTGGGGGTTTAGTTCTCTTCCTAATTATCATTGGGGATGTTTTATCTGGAAAGGAAAGTGGAGGTGAAGTGCACTTGGGACTTTTGCAACAGTGGTTTGGGGTTCATTGGTGGAATTCAAGGGAAGTTGCTCTTTTCATCACCTTGGTTCTTGTTATGCTTCCTTTGGTCTTGTACAAACGTGTAGAATCCTTGAAGTACAGTTCAGGAATATCAACTCTTCTTGCTGTGGCATTTGTTGCCATTTGTTCTGGTTTGGCTATTGTTGCTTTGGTGCAAGGAAAAACACAAACCCCTAAACTGGTTCCTCGATTAGATTACCAAACATCATTCTTTGATTTGTTCACTGCAGTTCCTGTTGTAGTCACAGCATTCACATTTCATTTCAATGTACATCCTATTGGGTTTGAGCTTGCAAGTCCATCTCATATGAAAACAGCGGTTCGATTAGCGATAATGTTTTGTGCTGTAGTCTACTTTACAATCGGTCTATTTGGCTACCTTTTGTTTGGAGATTCAACACAATCAGACATTCTAATCAATTTTGATCAGAATGCTGATTCTGCTGTTGGTTCATTGTTCAATAGTTTAATACGTGTAAGCTATGCACTCCACATTATGTTGGTATTCCCTCTTATAAATTTCTCTTTGAGAGCCAACATTGATGAACTCCTATTCCCTAAGAAGCCTCTGCTAGCCACAGACAACAAGAGATTTGTGATTATCACTCTTGTGCTCTTAGTATTCTCCTATCTTGCTGCTATAGCAATCCCAGATATTTGGTACTTCTTTCAGTTTCTAGGATCAACAACAGCACTATGCCTGGCTTTTATTTTCCCTGGCACTATTGTTTTAAGGGATGCTCTTGGCATATCAACAAGACAGGACAAAATTATAGCACTGGTTATGATTATACTAGCTGTAGTGACAAGTGTAATTGCAATCTCCACCAACATATACAATGCTTTAAGTAGCAAGTCATAA

Protein sequence

>Msa0417060

MSPTPSAGVNVPLLTGSNPAAVPGSIPGAVFNVATSIIGSGIMSIPAILKVLGVLPSFALILIVAVLAEVSVDFLMRFTHAGVTTTYSGVMKEAFGSVGALSAQVCVIITNFGGLVLFLIIIGDVLSGKESGGEVHLGLLQQWFGVHWWNSREVALFITLVLVMLPLVLYKRVESLKYSSGISTLLAVAFVAICSGLAIVALVQGKTQTPKLVPRLDYQTSFFDLFTAVPVVVTAFTFHFNVHPIGFELASPSHMKTAVRLAIMFCAVVYFTIGLFGYLLFGDSTQSDILINFDQNADSAVGSLFNSLIRVSYALHIMLVFPLINFSLRANIDELLFPKKPLLATDNKRFVIITLVLLVFSYLAAIAIPDIWYFFQFLGSTTALCLAFIFPGTIVLRDALGISTRQDKIIALVMIILAVVTSVIAISTNIYNALSSKS*