Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0417060 | XP_003601018.2 | 98.858 | 438 | 5 | 0 | 1 | 438 | 1 | 438 | 0.0 | 858 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0417060 | sp|Q9LYM2|AVT6C_ARATH | 59.314 | 408 | 166 | 0 | 25 | 432 | 24 | 431 | 4.02e-173 | 494 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0417060 | G7J2G3 | 98.858 | 438 | 5 | 0 | 1 | 438 | 1 | 438 | 0.0 | 858 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0003370 | Msa0417060 | -0.807610 | 4.648035e-50 | -8.615850e-47 |
Msa0004180 | Msa0417060 | -0.805028 | 1.626391e-49 | -8.615850e-47 |
Msa0028410 | Msa0417060 | -0.806215 | 9.166257e-50 | -8.615850e-47 |
Msa0028450 | Msa0417060 | -0.814925 | 1.201630e-51 | -8.615850e-47 |
Msa0034590 | Msa0417060 | -0.801481 | 8.824695e-49 | -8.615850e-47 |
Msa0036560 | Msa0417060 | -0.809706 | 1.657166e-50 | -8.615850e-47 |
Msa0044120 | Msa0417060 | 0.803409 | 3.534812e-49 | -8.615850e-47 |
Msa0078160 | Msa0417060 | -0.813285 | 2.765137e-51 | -8.615850e-47 |
Msa0078170 | Msa0417060 | -0.803036 | 4.223113e-49 | -8.615850e-47 |
Msa0097220 | Msa0417060 | -0.805811 | 1.114621e-49 | -8.615850e-47 |
Msa0100200 | Msa0417060 | 0.800852 | 1.186706e-48 | -8.615850e-47 |
Msa0124070 | Msa0417060 | -0.810287 | 1.242626e-50 | -8.615850e-47 |
Msa0129820 | Msa0417060 | -0.804692 | 1.912202e-49 | -8.615850e-47 |
Msa0139280 | Msa0417060 | -0.804141 | 2.491294e-49 | -8.615850e-47 |
Msa0146570 | Msa0417060 | -0.809316 | 2.009303e-50 | -8.615850e-47 |
Msa0147070 | Msa0417060 | -0.807706 | 4.433147e-50 | -8.615850e-47 |
Msa0147960 | Msa0417060 | -0.801395 | 9.188548e-49 | -8.615850e-47 |
Msa0164580 | Msa0417060 | -0.814505 | 1.488743e-51 | -8.615850e-47 |
Msa0168470 | Msa0417060 | -0.837951 | 3.839139e-57 | -8.615850e-47 |
Msa0170550 | Msa0417060 | -0.802343 | 5.867685e-49 | -8.615850e-47 |
Msa0176610 | Msa0417060 | -0.805933 | 1.050891e-49 | -8.615850e-47 |
Msa0184320 | Msa0417060 | 0.802313 | 5.952408e-49 | -8.615850e-47 |
Msa0186380 | Msa0417060 | -0.808423 | 3.120369e-50 | -8.615850e-47 |
Msa0191470 | Msa0417060 | 0.833585 | 4.899810e-56 | -8.615850e-47 |
Msa0235000 | Msa0417060 | 0.801696 | 7.971005e-49 | -8.615850e-47 |
Msa0367350 | Msa0417060 | 0.818210 | 2.207471e-52 | -8.615850e-47 |
Msa0368620 | Msa0417060 | 0.815806 | 7.655423e-52 | -8.615850e-47 |
Msa0369660 | Msa0417060 | 0.937600 | 2.660628e-98 | -8.615850e-47 |
Msa0385870 | Msa0417060 | -0.813729 | 2.208936e-51 | -8.615850e-47 |
Msa0386390 | Msa0417060 | -0.801636 | 8.198866e-49 | -8.615850e-47 |
Msa0389710 | Msa0417060 | 0.812507 | 4.093813e-51 | -8.615850e-47 |
Msa0417060 | Msa0421690 | 0.810198 | 1.298387e-50 | -8.615850e-47 |
Msa0417060 | Msa0424930 | -0.802045 | 6.759032e-49 | -8.615850e-47 |
Msa0417060 | Msa0433090 | 0.809705 | 1.658397e-50 | -8.615850e-47 |
Msa0417060 | Msa0434140 | 0.808672 | 2.760356e-50 | -8.615850e-47 |
Msa0417060 | Msa0463890 | 0.894063 | 3.505346e-75 | -8.615850e-47 |
Msa0417060 | Msa0469770 | -0.800199 | 1.611681e-48 | -8.615850e-47 |
Msa0417060 | Msa0475080 | -0.812850 | 3.445809e-51 | -8.615850e-47 |
Msa0417060 | Msa0480260 | 0.816498 | 5.360360e-52 | -8.615850e-47 |
Msa0417060 | Msa0482360 | 0.845960 | 2.931709e-59 | -8.615850e-47 |
Msa0417060 | Msa0485260 | -0.808730 | 2.682778e-50 | -8.615850e-47 |
Msa0417060 | Msa0498320 | -0.806171 | 9.362205e-50 | -8.615850e-47 |
Msa0417060 | Msa0501540 | -0.803972 | 2.701274e-49 | -8.615850e-47 |
Msa0417060 | Msa0508160 | 0.803406 | 3.540062e-49 | -8.615850e-47 |
Msa0417060 | Msa0509420 | 0.809211 | 2.116464e-50 | -8.615850e-47 |
Msa0417060 | Msa0512930 | -0.800620 | 1.323264e-48 | -8.615850e-47 |
Msa0417060 | Msa0517200 | 0.810017 | 1.420470e-50 | -8.615850e-47 |
Msa0417060 | Msa0521720 | 0.800748 | 1.246231e-48 | -8.615850e-47 |
Msa0417060 | Msa0527210 | -0.803623 | 3.191352e-49 | -8.615850e-47 |
Msa0417060 | Msa0532910 | -0.831718 | 1.424368e-55 | -8.615850e-47 |
Msa0417060 | Msa0550820 | -0.811704 | 6.128032e-51 | -8.615850e-47 |
Msa0417060 | Msa0565930 | -0.806921 | 6.503368e-50 | -8.615850e-47 |
Msa0417060 | Msa0572700 | 0.830668 | 2.579575e-55 | -8.615850e-47 |
Msa0417060 | Msa0574310 | 0.805216 | 1.485661e-49 | -8.615850e-47 |
Msa0417060 | Msa0584250 | -0.813129 | 2.991929e-51 | -8.615850e-47 |
Msa0417060 | Msa0585720 | -0.800526 | 1.382947e-48 | -8.615850e-47 |
Msa0417060 | Msa0587930 | 0.810848 | 9.400085e-51 | -8.615850e-47 |
Msa0417060 | Msa0591260 | -0.800882 | 1.169942e-48 | -8.615850e-47 |
Msa0417060 | Msa0597800 | 0.802568 | 5.274120e-49 | -8.615850e-47 |
Msa0417060 | Msa0598610 | -0.837190 | 6.016716e-57 | -8.615850e-47 |
Msa0417060 | Msa0606230 | -0.808045 | 3.755994e-50 | -8.615850e-47 |
Msa0417060 | Msa0616570 | -0.803836 | 2.882268e-49 | -8.615850e-47 |
Msa0417060 | Msa0619450 | -0.821083 | 4.875601e-53 | -8.615850e-47 |
Msa0417060 | Msa0619530 | -0.814366 | 1.598037e-51 | -8.615850e-47 |
Msa0417060 | Msa0621870 | -0.836628 | 8.369740e-57 | -8.615850e-47 |
Msa0417060 | Msa0622800 | -0.818237 | 2.176730e-52 | -8.615850e-47 |
Msa0417060 | Msa0624260 | -0.810985 | 8.776670e-51 | -8.615850e-47 |
Msa0417060 | Msa0624360 | -0.815678 | 8.173872e-52 | -8.615850e-47 |
Msa0417060 | Msa0649140 | -0.800274 | 1.556572e-48 | -8.615850e-47 |
Msa0417060 | Msa0650550 | 0.802127 | 6.502248e-49 | -8.615850e-47 |
Msa0417060 | Msa0653540 | 0.815636 | 8.353387e-52 | -8.615850e-47 |
Msa0417060 | Msa0659580 | -0.820173 | 7.886819e-53 | -8.615850e-47 |
Msa0417060 | Msa0663580 | -0.801275 | 9.721776e-49 | -8.615850e-47 |
Msa0417060 | Msa0667710 | -0.830014 | 3.728175e-55 | -8.615850e-47 |
Msa0417060 | Msa0681100 | -0.821291 | 4.366648e-53 | -8.615850e-47 |
Msa0417060 | Msa0699900 | -0.801650 | 8.147350e-49 | -8.615850e-47 |
Msa0417060 | Msa0701490 | 0.815401 | 9.419519e-52 | -8.615850e-47 |
Msa0417060 | Msa0701560 | 0.820765 | 5.768539e-53 | -8.615850e-47 |
Msa0417060 | Msa0708840 | -0.811711 | 6.107585e-51 | -8.615850e-47 |
Msa0417060 | Msa0714230 | -0.825194 | 5.355272e-54 | -8.615850e-47 |
Msa0417060 | Msa0719160 | -0.820488 | 6.681451e-53 | -8.615850e-47 |
Msa0417060 | Msa0727230 | 0.826435 | 2.717224e-54 | -8.615850e-47 |
Msa0417060 | Msa0742690 | -0.801882 | 7.299171e-49 | -8.615850e-47 |
Msa0417060 | Msa0748470 | -0.802097 | 6.593075e-49 | -8.615850e-47 |
Msa0417060 | Msa0751510 | 0.810506 | 1.114394e-50 | -8.615850e-47 |
Msa0417060 | Msa0753410 | 0.811064 | 8.439776e-51 | -8.615850e-47 |
Msa0417060 | Msa0777210 | 0.803758 | 2.991683e-49 | -8.615850e-47 |
Msa0417060 | Msa0795320 | 0.800419 | 1.453976e-48 | -8.615850e-47 |
Msa0417060 | Msa0795330 | 0.801022 | 1.095279e-48 | -8.615850e-47 |
Msa0417060 | Msa0799150 | -0.832381 | 9.765151e-56 | -8.615850e-47 |
Msa0417060 | Msa0814350 | 0.804932 | 1.703756e-49 | -8.615850e-47 |
Msa0417060 | Msa0824750 | -0.804737 | 1.870753e-49 | -8.615850e-47 |
Msa0417060 | Msa0827560 | -0.807020 | 6.198734e-50 | -8.615850e-47 |
Msa0417060 | Msa0828350 | 0.803650 | 3.150340e-49 | -8.615850e-47 |
Msa0417060 | Msa0828730 | -0.804213 | 2.406803e-49 | -8.615850e-47 |
Msa0417060 | Msa0854860 | 0.814400 | 1.570815e-51 | -8.615850e-47 |
Msa0417060 | Msa0880370 | -0.819142 | 1.356360e-52 | -8.615850e-47 |
Msa0417060 | Msa0883880 | -0.816531 | 5.270071e-52 | -8.615850e-47 |
Msa0417060 | Msa0907520 | -0.831762 | 1.389154e-55 | -8.615850e-47 |
Msa0417060 | Msa0910590 | 0.811605 | 6.438211e-51 | -8.615850e-47 |
Msa0417060 | Msa0911490 | -0.803694 | 3.085423e-49 | -8.615850e-47 |
Msa0417060 | Msa0930150 | -0.812718 | 3.682894e-51 | -8.615850e-47 |
Msa0417060 | Msa0932040 | -0.848633 | 5.414139e-60 | -8.615850e-47 |
Msa0417060 | Msa0933500 | -0.801912 | 7.196979e-49 | -8.615850e-47 |
Msa0417060 | Msa0940400 | -0.833982 | 3.899415e-56 | -8.615850e-47 |
Msa0417060 | Msa0946570 | -0.807188 | 5.710516e-50 | -8.615850e-47 |
Msa0417060 | Msa0948430 | 0.800010 | 1.761035e-48 | -8.615850e-47 |
Msa0417060 | Msa0970160 | -0.849986 | 2.273183e-60 | -8.615850e-47 |
Msa0417060 | Msa0974410 | -0.805734 | 1.156883e-49 | -8.615850e-47 |
Msa0417060 | Msa0976950 | -0.808519 | 2.976631e-50 | -8.615850e-47 |
Msa0417060 | Msa0982340 | 0.811855 | 5.682319e-51 | -8.615850e-47 |
Msa0417060 | Msa0985380 | 0.803840 | 2.877432e-49 | -8.615850e-47 |
Msa0417060 | Msa0985980 | -0.808842 | 2.538723e-50 | -8.615850e-47 |
Msa0417060 | Msa1014530 | -0.836251 | 1.043919e-56 | -8.615850e-47 |
Msa0417060 | Msa1041620 | -0.811719 | 6.082939e-51 | -8.615850e-47 |
Msa0417060 | Msa1044520 | -0.811741 | 6.014468e-51 | -8.615850e-47 |
Msa0417060 | Msa1055490 | -0.822633 | 2.133921e-53 | -8.615850e-47 |
Msa0417060 | Msa1086580 | -0.801639 | 8.187774e-49 | -8.615850e-47 |
Msa0417060 | Msa1118890 | -0.806082 | 9.777386e-50 | -8.615850e-47 |
Msa0417060 | Msa1129540 | 0.807160 | 5.789704e-50 | -8.615850e-47 |
Msa0417060 | Msa1136770 | -0.803029 | 4.236400e-49 | -8.615850e-47 |
Msa0417060 | Msa1137980 | 0.816235 | 6.139050e-52 | -8.615850e-47 |
Msa0417060 | Msa1162050 | 0.803984 | 2.684769e-49 | -8.615850e-47 |
Msa0417060 | Msa1166520 | -0.806585 | 7.658038e-50 | -8.615850e-47 |
Msa0417060 | Msa1174450 | 0.862118 | 6.353327e-64 | -8.615850e-47 |
Msa0417060 | Msa1177650 | 0.808116 | 3.627128e-50 | -8.615850e-47 |
Msa0417060 | Msa1187160 | 0.839256 | 1.767138e-57 | -8.615850e-47 |
Msa0417060 | Msa1197210 | -0.804329 | 2.276198e-49 | -8.615850e-47 |
Msa0417060 | Msa1207000 | 0.815879 | 7.373935e-52 | -8.615850e-47 |
Msa0417060 | Msa1207090 | 0.815789 | 7.720440e-52 | -8.615850e-47 |
Msa0417060 | Msa1219790 | 0.802720 | 4.907180e-49 | -8.615850e-47 |
Msa0417060 | Msa1220390 | -0.800232 | 1.587260e-48 | -8.615850e-47 |
Msa0417060 | Msa1223050 | -0.805287 | 1.436079e-49 | -8.615850e-47 |
Msa0417060 | Msa1223600 | -0.810338 | 1.211382e-50 | -8.615850e-47 |
Msa0417060 | Msa1229880 | -0.816732 | 4.752292e-52 | -8.615850e-47 |
Msa0417060 | Msa1235960 | -0.821204 | 4.570941e-53 | -8.615850e-47 |
Msa0417060 | Msa1235990 | -0.825764 | 3.924224e-54 | -8.615850e-47 |
Msa0417060 | Msa1239190 | 0.822529 | 2.256630e-53 | -8.615850e-47 |
Msa0417060 | Msa1244630 | 0.812146 | 4.910495e-51 | -8.615850e-47 |
Msa0417060 | Msa1251830 | -0.800016 | 1.755942e-48 | -8.615850e-47 |
Msa0417060 | Msa1251890 | -0.820695 | 5.986214e-53 | -8.615850e-47 |
Msa0417060 | Msa1252220 | -0.826418 | 2.742336e-54 | -8.615850e-47 |
Msa0417060 | Msa1258600 | 0.833762 | 4.427225e-56 | -8.615850e-47 |
Msa0417060 | Msa1263600 | -0.804921 | 1.712278e-49 | -8.615850e-47 |
Msa0417060 | Msa1264300 | -0.818146 | 2.282716e-52 | -8.615850e-47 |
Msa0417060 | Msa1265990 | -0.837674 | 4.522773e-57 | -8.615850e-47 |
Msa0417060 | Msa1267800 | -0.820890 | 5.401632e-53 | -8.615850e-47 |
Msa0417060 | Msa1292560 | 0.809306 | 2.019782e-50 | -8.615850e-47 |
Msa0417060 | Msa1293030 | -0.809601 | 1.745843e-50 | -8.615850e-47 |
Msa0417060 | Msa1298440 | 0.820088 | 8.251129e-53 | -8.615850e-47 |
Msa0417060 | Msa1302120 | 0.817461 | 3.259149e-52 | -8.615850e-47 |
Msa0417060 | Msa1310620 | -0.815803 | 7.667955e-52 | -8.615850e-47 |
Msa0417060 | Msa1314810 | 0.827516 | 1.498166e-54 | -8.615850e-47 |
Msa0417060 | Msa1316090 | -0.828613 | 8.157367e-55 | -8.615850e-47 |
Msa0417060 | Msa1317740 | 0.806907 | 6.549382e-50 | -8.615850e-47 |
Msa0417060 | Msa1334350 | -0.812045 | 5.165289e-51 | -8.615850e-47 |
Msa0417060 | Msa1336130 | 0.816626 | 5.020074e-52 | -8.615850e-47 |
Msa0417060 | Msa1342460 | -0.804200 | 2.420871e-49 | -8.615850e-47 |
Msa0417060 | Msa1354770 | -0.800163 | 1.639296e-48 | -8.615850e-47 |
Msa0417060 | Msa1356500 | -0.850142 | 2.056001e-60 | -8.615850e-47 |
Msa0417060 | Msa1357760 | -0.802154 | 6.417271e-49 | -8.615850e-47 |
Msa0417060 | Msa1359520 | 0.804172 | 2.453772e-49 | -8.615850e-47 |
Msa0417060 | Msa1361090 | -0.800606 | 1.332143e-48 | -8.615850e-47 |
Msa0417060 | Msa1362630 | 0.800200 | 1.611491e-48 | -8.615850e-47 |
Msa0417060 | Msa1364690 | 0.807482 | 4.947119e-50 | -8.615850e-47 |
Msa0417060 | Msa1369720 | 0.811374 | 7.229828e-51 | -8.615850e-47 |
Msa0417060 | Msa1375640 | 0.818971 | 1.483803e-52 | -8.615850e-47 |
Msa0417060 | Msa1376520 | 0.844710 | 6.386245e-59 | -8.615850e-47 |
Msa0417060 | Msa1378020 | 0.837874 | 4.017479e-57 | -8.615850e-47 |
Msa0417060 | Msa1379930 | -0.801348 | 9.392700e-49 | -8.615850e-47 |
Msa0417060 | Msa1393730 | 0.809593 | 1.752768e-50 | -8.615850e-47 |
Msa0417060 | Msa1398150 | -0.806419 | 8.302111e-50 | -8.615850e-47 |
Msa0417060 | Msa1400940 | 0.838502 | 2.767825e-57 | -8.615850e-47 |
Msa0417060 | Msa1402340 | -0.810170 | 1.317035e-50 | -8.615850e-47 |
Msa0417060 | Msa1403820 | -0.802055 | 6.726911e-49 | -8.615850e-47 |
Msa0417060 | Msa1408320 | 0.839419 | 1.602209e-57 | -8.615850e-47 |
Msa0417060 | Msa1410360 | -0.800840 | 1.193524e-48 | -8.615850e-47 |
Msa0417060 | Msa1418010 | -0.808145 | 3.576699e-50 | -8.615850e-47 |
Msa0417060 | Msa1418210 | -0.814060 | 1.867127e-51 | -8.615850e-47 |
Msa0417060 | Msa1420630 | -0.831549 | 1.567534e-55 | -8.615850e-47 |
Msa0417060 | Msa1425570 | -0.833674 | 4.657597e-56 | -8.615850e-47 |
Msa0417060 | Msa1429190 | 0.830079 | 3.593536e-55 | -8.615850e-47 |
Msa0417060 | Msa1430630 | -0.805527 | 1.278692e-49 | -8.615850e-47 |
Msa0417060 | Msa1447140 | 0.814763 | 1.305532e-51 | -8.615850e-47 |
Msa0417060 | Msa1449510 | -0.807482 | 4.948201e-50 | -8.615850e-47 |
Msa0417060 | Msa1453890 | 0.819832 | 9.439869e-53 | -8.615850e-47 |
Msa0417060 | Msa1455330 | 0.821776 | 3.373656e-53 | -8.615850e-47 |
Msa0417060 | Msa1463640 | 0.812362 | 4.405552e-51 | -8.615850e-47 |
Msa0261020 | Msa0417060 | -0.805916 | 1.059717e-49 | -8.615850e-47 |
Msa0268070 | Msa0417060 | 0.801767 | 7.710190e-49 | -8.615850e-47 |
Msa0273400 | Msa0417060 | 0.810581 | 1.073622e-50 | -8.615850e-47 |
Msa0285510 | Msa0417060 | -0.817157 | 3.815047e-52 | -8.615850e-47 |
Msa0305810 | Msa0417060 | -0.800892 | 1.164651e-48 | -8.615850e-47 |
Msa0312300 | Msa0417060 | 0.820932 | 5.282336e-53 | -8.615850e-47 |
Msa0335050 | Msa0417060 | 0.815094 | 1.102353e-51 | -8.615850e-47 |
Msa0336550 | Msa0417060 | -0.816910 | 4.334781e-52 | -8.615850e-47 |
Msa0361040 | Msa0417060 | -0.813996 | 1.928660e-51 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0417060 | MtrunA17_Chr3g0114351 | 98.858 | 438 | 5 | 0 | 1 | 438 | 1 | 438 | 0.0 | 858 |
Msa0417060 | MtrunA17_Chr5g0437961 | 73.647 | 425 | 112 | 0 | 8 | 432 | 3 | 427 | 0.0 | 649 |
Msa0417060 | MtrunA17_Chr5g0437951 | 54.691 | 437 | 185 | 4 | 12 | 436 | 11 | 446 | 6.79e-173 | 491 |
Msa0417060 | MtrunA17_Chr7g0220531 | 47.430 | 428 | 219 | 1 | 10 | 431 | 29 | 456 | 3.09e-137 | 402 |
Msa0417060 | MtrunA17_Chr8g0366021 | 46.763 | 417 | 219 | 1 | 25 | 438 | 48 | 464 | 1.44e-129 | 382 |
Msa0417060 | MtrunA17_Chr6g0455911 | 44.394 | 437 | 233 | 4 | 10 | 438 | 20 | 454 | 1.05e-120 | 359 |
Msa0417060 | MtrunA17_Chr6g0455951 | 42.466 | 438 | 242 | 4 | 9 | 438 | 24 | 459 | 4.25e-119 | 355 |
Msa0417060 | MtrunA17_Chr6g0455981 | 42.523 | 428 | 237 | 3 | 10 | 429 | 22 | 448 | 4.86e-119 | 355 |
Msa0417060 | MtrunA17_Chr6g0455941 | 43.750 | 416 | 231 | 2 | 25 | 438 | 48 | 462 | 6.96e-115 | 344 |
Msa0417060 | MtrunA17_Chr2g0333321 | 39.815 | 432 | 251 | 5 | 10 | 438 | 62 | 487 | 1.32e-107 | 327 |
Msa0417060 | MtrunA17_Chr8g0366001 | 45.896 | 268 | 142 | 1 | 174 | 438 | 4 | 271 | 6.11e-78 | 243 |
Msa0417060 | MtrunA17_Chr6g0459871 | 40.824 | 267 | 155 | 2 | 174 | 438 | 50 | 315 | 7.51e-61 | 200 |
Msa0417060 | MtrunA17_Chr3g0114341 | 77.982 | 109 | 24 | 0 | 4 | 112 | 2 | 110 | 7.08e-49 | 162 |
Msa0417060 | MtrunA17_Chr8g0365971 | 46.296 | 162 | 86 | 1 | 25 | 186 | 52 | 212 | 1.37e-39 | 141 |
Msa0417060 | MtrunA17_Chr8g0365991 | 50.467 | 107 | 53 | 0 | 25 | 131 | 48 | 154 | 4.45e-25 | 101 |
Msa0417060 | MtrunA17_Chr4g0022261 | 21.759 | 432 | 297 | 13 | 14 | 436 | 124 | 523 | 5.46e-11 | 64.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0417060 | AT3G56200.1 | 59.314 | 408 | 166 | 0 | 25 | 432 | 24 | 431 | 4.08e-174 | 494 |
Msa0417060 | AT2G40420.1 | 58.469 | 431 | 174 | 2 | 6 | 431 | 2 | 432 | 3.75e-171 | 487 |
Msa0417060 | AT3G30390.1 | 45.872 | 436 | 230 | 1 | 2 | 431 | 15 | 450 | 3.21e-132 | 389 |
Msa0417060 | AT3G30390.3 | 45.872 | 436 | 230 | 1 | 2 | 431 | 15 | 450 | 3.21e-132 | 389 |
Msa0417060 | AT3G30390.2 | 45.872 | 436 | 230 | 1 | 2 | 431 | 15 | 450 | 3.21e-132 | 389 |
Msa0417060 | AT5G38820.1 | 44.626 | 428 | 229 | 2 | 12 | 431 | 17 | 444 | 1.57e-128 | 379 |
Msa0417060 | AT5G38820.3 | 44.626 | 428 | 229 | 2 | 12 | 431 | 17 | 444 | 1.57e-128 | 379 |
Msa0417060 | AT5G38820.2 | 44.626 | 428 | 229 | 2 | 12 | 431 | 22 | 449 | 2.19e-128 | 379 |
Msa0417060 | AT1G80510.1 | 40.460 | 435 | 245 | 6 | 10 | 438 | 62 | 488 | 1.44e-97 | 301 |
Msa0417060 | AT2G39130.2 | 23.611 | 432 | 271 | 13 | 19 | 435 | 155 | 542 | 8.86e-11 | 64.3 |
Msa0417060 | AT2G39130.1 | 23.611 | 432 | 271 | 13 | 19 | 435 | 155 | 542 | 8.86e-11 | 64.3 |
Find 121 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TACTTTACAATCGGTCTATT+TGG | 0.154949 | 3_2:+64177826 | Msa0417060:CDS |
TGAAAGAAGTACCAAATATC+TGG | 0.234058 | 3_2:-64178123 | None:intergenic |
GGTTCTAACCAATGATAATT+AGG | 0.245044 | 3_2:-64176643 | None:intergenic |
GTGGCTAGCAGAGGCTTCTT+AGG | 0.255194 | 3_2:-64178030 | None:intergenic |
TCTAATCGAGGAACCAGTTT+AGG | 0.267712 | 3_2:-64177533 | None:intergenic |
TGGTACTTCTTTCAGTTTCT+AGG | 0.268753 | 3_2:+64178132 | Msa0417060:CDS |
TCATTATCTTGTCAAATAAA+AGG | 0.272418 | 3_2:+64178813 | Msa0417060:three_prime_UTR |
TCAAATCCGGCGGCGGTTCC+TGG | 0.299360 | 3_2:+64176338 | Msa0417060:CDS |
CTATAGCAATCCCAGATATT+TGG | 0.301975 | 3_2:+64178112 | Msa0417060:CDS |
GCATTTGTTGCCATTTGTTC+TGG | 0.310819 | 3_2:+64177470 | Msa0417060:CDS |
AACAGTGGTTTGGGGTTCAT+TGG | 0.328083 | 3_2:+64176991 | Msa0417060:CDS |
GGGGAGTTGGGGCGTGGAAG+GGG | 0.330652 | 3_2:+64178525 | Msa0417060:three_prime_UTR |
CTAATCGAGGAACCAGTTTA+GGG | 0.333126 | 3_2:-64177532 | None:intergenic |
GTGTTATAATAACAAACTTT+GGG | 0.335417 | 3_2:+64176606 | Msa0417060:CDS |
TTACTTGCAGTACATCCTAT+TGG | 0.338534 | 3_2:+64177733 | Msa0417060:intron |
TACTTGCAGTACATCCTATT+GGG | 0.340851 | 3_2:+64177734 | Msa0417060:intron |
CTCAAAGAGAAATTTATAAG+AGG | 0.349290 | 3_2:-64177982 | None:intergenic |
GGTTCTTGTTATGCTTCCTT+TGG | 0.349741 | 3_2:+64177049 | Msa0417060:CDS |
CAGAAACGTGGGACAAAGTT+GGG | 0.352434 | 3_2:+64178684 | Msa0417060:three_prime_UTR |
TGGTTTGGCTATTGTTGCTT+TGG | 0.368599 | 3_2:+64177490 | Msa0417060:CDS |
GGTGTTATGAAGGAAGCTTT+TGG | 0.378184 | 3_2:+64176554 | Msa0417060:CDS |
GCATTCACATTTCATTTCAA+TGG | 0.380536 | 3_2:+64177608 | Msa0417060:CDS |
GTTCTCTTCCTAATTATCAT+TGG | 0.381754 | 3_2:+64176635 | Msa0417060:CDS |
CTCCGGAATCATGTCAATTC+CGG | 0.385246 | 3_2:+64176406 | Msa0417060:CDS |
TGTGTTATAATAACAAACTT+TGG | 0.388848 | 3_2:+64176605 | Msa0417060:CDS |
AATGTCGCCACCAGCATAAT+CGG | 0.388972 | 3_2:+64176383 | Msa0417060:CDS |
TGTTGCCATTTGTTCTGGTT+TGG | 0.397590 | 3_2:+64177475 | Msa0417060:CDS |
TATTCCTGAACTGTACTTCA+AGG | 0.402238 | 3_2:-64177429 | None:intergenic |
CGCCGGAATTGACATGATTC+CGG | 0.403675 | 3_2:-64176408 | None:intergenic |
GCAGAGGCTTCTTAGGGAAT+AGG | 0.417972 | 3_2:-64178023 | None:intergenic |
GGGTTCATTGGTGGAATTCA+AGG | 0.420529 | 3_2:+64177003 | Msa0417060:CDS |
GATTGCTATAGCAGCAAGAT+AGG | 0.434216 | 3_2:-64178100 | None:intergenic |
CCGGCGATTCTCAAAGTTCT+CGG | 0.438035 | 3_2:+64176425 | Msa0417060:CDS |
CAGAATGCTGATTCTGCTGT+TGG | 0.441483 | 3_2:+64177901 | Msa0417060:CDS |
GAATCCTTGAAGTACAGTTC+AGG | 0.450089 | 3_2:+64177425 | Msa0417060:intron |
GCGGTTCCTGGTTCAATCCC+TGG | 0.452034 | 3_2:+64176350 | Msa0417060:CDS |
GAGAGTTGAGAGAGGAAATG+TGG | 0.458853 | 3_2:-64176247 | None:intergenic |
GCGACATTGAATACGGCGCC+AGG | 0.467060 | 3_2:-64176368 | None:intergenic |
CTTGCAAGCTCAAACCCAAT+AGG | 0.469781 | 3_2:-64177748 | None:intergenic |
TAAAAGGTCCCATGCGATGA+TGG | 0.470794 | 3_2:+64178829 | Msa0417060:three_prime_UTR |
ACAAATCAAAGAATGATGTT+TGG | 0.476934 | 3_2:-64177559 | None:intergenic |
AACCGCCGCCGGATTTGATC+CGG | 0.483830 | 3_2:-64176333 | None:intergenic |
TACCTTAAAACAATAGTGCC+AGG | 0.484684 | 3_2:-64178189 | None:intergenic |
AATAGCCAAACCAGAACAAA+TGG | 0.490020 | 3_2:-64177480 | None:intergenic |
AGTGGTTTGGGGTTCATTGG+TGG | 0.490922 | 3_2:+64176994 | Msa0417060:CDS |
TGGCTAGCAGAGGCTTCTTA+GGG | 0.492601 | 3_2:-64178029 | None:intergenic |
GTGAATGCTGTGACTACAAC+AGG | 0.493679 | 3_2:-64177593 | None:intergenic |
GCTGTAGTCTACTTTACAAT+CGG | 0.495082 | 3_2:+64177817 | Msa0417060:CDS |
GGTGTAACCACGACGTACTC+TGG | 0.498670 | 3_2:+64176533 | Msa0417060:CDS |
ATCAACAACAGCACTATGCC+TGG | 0.499325 | 3_2:+64178155 | Msa0417060:CDS |
AAGTGGAGGTGAAGTGCACT+TGG | 0.500293 | 3_2:+64176959 | Msa0417060:CDS |
ATAAGAATCAAGGCGAAAGA+AGG | 0.506142 | 3_2:-64176455 | None:intergenic |
TAAAGCATTGTATATGTTGG+TGG | 0.512729 | 3_2:-64178426 | None:intergenic |
TCTCTTGACCGGATCAAATC+CGG | 0.513994 | 3_2:+64176325 | Msa0417060:CDS |
GCTGGTGGCGACATTGAATA+CGG | 0.515321 | 3_2:-64176375 | None:intergenic |
TCTAATGACAGGGATGCTCT+TGG | 0.515706 | 3_2:+64178326 | Msa0417060:intron |
GTCAACGTCCCTCTCTTGAC+CGG | 0.521264 | 3_2:+64176314 | Msa0417060:CDS |
GAGAAAATCAACAGAAACTT+CGG | 0.523044 | 3_2:-64176492 | None:intergenic |
TAAGTAGCAAGTCATAATGT+TGG | 0.523113 | 3_2:+64178447 | Msa0417060:exon |
GAAAGAAGTACCAAATATCT+GGG | 0.527104 | 3_2:-64178122 | None:intergenic |
CATTTAAACAATAACTAGCT+AGG | 0.528108 | 3_2:-64178757 | None:intergenic |
ACAGAAACGTGGGACAAAGT+TGG | 0.528194 | 3_2:+64178683 | Msa0417060:three_prime_UTR |
GACCGGATCAAATCCGGCGG+CGG | 0.531549 | 3_2:+64176331 | Msa0417060:CDS |
GCTATTGTTGCTTTGGTGCA+AGG | 0.533508 | 3_2:+64177497 | Msa0417060:CDS |
AACAGAAACTTCGGCGAGCA+CGG | 0.535273 | 3_2:-64176483 | None:intergenic |
GAATAGGAGTTCATCAATGT+TGG | 0.539647 | 3_2:-64178007 | None:intergenic |
TTCTCATTACCATCATCGCA+TGG | 0.540968 | 3_2:-64178838 | None:intergenic |
GTGTTGAATCTCCAAACAAA+AGG | 0.542964 | 3_2:-64177852 | None:intergenic |
TCAAAGAGAAATTTATAAGA+GGG | 0.545469 | 3_2:-64177981 | None:intergenic |
GACGTACTCTGGTGTTATGA+AGG | 0.546221 | 3_2:+64176544 | Msa0417060:CDS |
ACAATAACTAGCTAGGTTCA+CGG | 0.546846 | 3_2:-64178750 | None:intergenic |
TTGTTGTCTGTGGCTAGCAG+AGG | 0.547461 | 3_2:-64178039 | None:intergenic |
CAAGAGAGGGACGTTGACTC+CGG | 0.550502 | 3_2:-64176309 | None:intergenic |
GCCACCAGCATAATCGGCTC+CGG | 0.553474 | 3_2:+64176389 | Msa0417060:CDS |
TGCCAGGGAAAATAAAAGCC+AGG | 0.554102 | 3_2:-64178173 | None:intergenic |
ATTGAACCAGGAACCGCCGC+CGG | 0.560640 | 3_2:-64176344 | None:intergenic |
TGTTATAATAACAAACTTTG+GGG | 0.563026 | 3_2:+64176607 | Msa0417060:CDS |
ACAGGACAAAATTATAGCAC+TGG | 0.566982 | 3_2:+64178361 | Msa0417060:CDS |
GATTCCGGAGCCGATTATGC+TGG | 0.567198 | 3_2:-64176393 | None:intergenic |
ATGTCACCAACACCGTCTGC+CGG | 0.570180 | 3_2:+64176290 | Msa0417060:CDS |
CACAAATCTCTTGTTGTCTG+TGG | 0.572225 | 3_2:-64178049 | None:intergenic |
CACGGCGACGATAAGAATCA+AGG | 0.576008 | 3_2:-64176465 | None:intergenic |
AAATACCAACAAAATGAGCC+TGG | 0.577282 | 3_2:-64178556 | None:intergenic |
GGTTCATTGGTGGAATTCAA+GGG | 0.580061 | 3_2:+64177004 | Msa0417060:CDS |
CTATGCACTCCACATTATGT+TGG | 0.580938 | 3_2:+64177954 | Msa0417060:CDS |
CCGAGAACTTTGAGAATCGC+CGG | 0.581794 | 3_2:-64176425 | None:intergenic |
AGACGGTGTTGGTGACATCC+CGG | 0.584616 | 3_2:-64176285 | None:intergenic |
TTGACTCCGGCAGACGGTGT+TGG | 0.599042 | 3_2:-64176296 | None:intergenic |
ACTTAAAGCATTGTATATGT+TGG | 0.600971 | 3_2:-64178429 | None:intergenic |
GAGGGAATACCAACATAATG+TGG | 0.601359 | 3_2:-64177963 | None:intergenic |
TTTGTGGATTGCACGACAGG+GGG | 0.601459 | 3_2:-64178861 | None:intergenic |
TCTTGGCATATCAACAAGAC+AGG | 0.602838 | 3_2:+64178343 | Msa0417060:CDS |
GATTTGATCCGGTCAAGAGA+GGG | 0.609106 | 3_2:-64176322 | None:intergenic |
TTGGTCTTGTACAAACGTGT+AGG | 0.611958 | 3_2:+64177068 | Msa0417060:CDS |
ACCTTAAAACAATAGTGCCA+GGG | 0.615343 | 3_2:-64178188 | None:intergenic |
TCCGGAGCCGATTATGCTGG+TGG | 0.619780 | 3_2:-64176390 | None:intergenic |
GGATTTGATCCGGTCAAGAG+AGG | 0.624870 | 3_2:-64176323 | None:intergenic |
TAATCGAGGAACCAGTTTAG+GGG | 0.626450 | 3_2:-64177531 | None:intergenic |
TCTCATTACCATCATCGCAT+GGG | 0.626522 | 3_2:-64178837 | None:intergenic |
GGGACGTTGACTCCGGCAGA+CGG | 0.628323 | 3_2:-64176302 | None:intergenic |
ACGGCGCCAGGGATTGAACC+AGG | 0.629078 | 3_2:-64176356 | None:intergenic |
AATATCAACTCTTCTTGCTG+TGG | 0.629266 | 3_2:+64177448 | Msa0417060:CDS |
CGACATTGAATACGGCGCCA+GGG | 0.630121 | 3_2:-64176367 | None:intergenic |
TTGAGCGCTTAAAGCTCCAA+CGG | 0.631364 | 3_2:-64176579 | None:intergenic |
TTATCTGGAAAGGAAAGTGG+AGG | 0.631552 | 3_2:+64176945 | Msa0417060:CDS |
AGAAACGTGGGACAAAGTTG+GGG | 0.639459 | 3_2:+64178685 | Msa0417060:three_prime_UTR |
TCAAAAGTCTACAGAAACGT+GGG | 0.641726 | 3_2:+64178673 | Msa0417060:three_prime_UTR |
AGAGTACGTCGTGGTTACAC+CGG | 0.641853 | 3_2:-64176531 | None:intergenic |
AAGAAAATCAAAGAAACACA+AGG | 0.644399 | 3_2:-64178581 | None:intergenic |
GATGTTTGGTAATCTAATCG+AGG | 0.648059 | 3_2:-64177545 | None:intergenic |
TTCAAAAGTCTACAGAAACG+TGG | 0.649590 | 3_2:+64178672 | Msa0417060:three_prime_UTR |
AGTGGAGGTGAAGTGCACTT+GGG | 0.652737 | 3_2:+64176960 | Msa0417060:CDS |
ACACGTTTGTACAAGACCAA+AGG | 0.661754 | 3_2:-64177065 | None:intergenic |
GTTATAATAACAAACTTTGG+GGG | 0.675510 | 3_2:+64176608 | Msa0417060:CDS |
AGAAAATCAAAGAAACACAA+GGG | 0.678637 | 3_2:-64178580 | None:intergenic |
AGGAAGCATAACAAGAACCA+AGG | 0.686365 | 3_2:-64177045 | None:intergenic |
TCCATCTCATATGAAAACAG+CGG | 0.700147 | 3_2:+64177771 | Msa0417060:CDS |
TATTTGACAAGATAATGACA+AGG | 0.702517 | 3_2:-64178808 | None:intergenic |
CTTGACCGGATCAAATCCGG+CGG | 0.711799 | 3_2:+64176328 | Msa0417060:CDS |
CATAACACCAGAGTACGTCG+TGG | 0.777944 | 3_2:-64176540 | None:intergenic |
CGGTGTTGGTGACATCCCGG+CGG | 0.797506 | 3_2:-64176282 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | GTTAATTATTATTCTATTAA+AGG | + | chr3_2:64178231-64178250 | Msa0417060:intron | 10.0% |
!! | ATAAAAGAAACAGATTAAAT+TGG | - | chr3_2:64176667-64176686 | None:intergenic | 15.0% |
!! | AAACAAAAAATTAATCCAAA+AGG | - | chr3_2:64176736-64176755 | None:intergenic | 15.0% |
!! | TATTTATGAAAGTTTGAATT+TGG | + | chr3_2:64176762-64176781 | Msa0417060:intron | 15.0% |
!! | ATTTATGAAAGTTTGAATTT+GGG | + | chr3_2:64176763-64176782 | Msa0417060:intron | 15.0% |
!!! | ATTATTTGTTCCTTTTTTAA+GGG | + | chr3_2:64177647-64177666 | Msa0417060:intron | 15.0% |
!! | ATTAGAAACAAAGAAAATTT+AGG | - | chr3_2:64178312-64178331 | None:intergenic | 15.0% |
!! | TGTGTTATAATAACAAACTT+TGG | + | chr3_2:64176605-64176624 | Msa0417060:CDS | 20.0% |
!! | GTGTTATAATAACAAACTTT+GGG | + | chr3_2:64176606-64176625 | Msa0417060:CDS | 20.0% |
!! | TGTTATAATAACAAACTTTG+GGG | + | chr3_2:64176607-64176626 | Msa0417060:CDS | 20.0% |
!!! | ATCTTTTATCAAAATCACAT+CGG | - | chr3_2:64177243-64177262 | None:intergenic | 20.0% |
!! | TTGATAAAAGATATACTATG+AGG | + | chr3_2:64177251-64177270 | Msa0417060:intron | 20.0% |
!!! | ACTTTTTTCGTTTTGAATTA+AGG | + | chr3_2:64177334-64177353 | Msa0417060:intron | 20.0% |
!!! | CATTATTTGTTCCTTTTTTA+AGG | + | chr3_2:64177646-64177665 | Msa0417060:intron | 20.0% |
!! | TCAAAGAGAAATTTATAAGA+GGG | - | chr3_2:64177984-64178003 | None:intergenic | 20.0% |
!!! | TCTACTACAAAAAGTTTTAT+TGG | + | chr3_2:64178502-64178521 | Msa0417060:three_prime_UTR | 20.0% |
!!! | CTACTACAAAAAGTTTTATT+GGG | + | chr3_2:64178503-64178522 | Msa0417060:three_prime_UTR | 20.0% |
!!! | TACTACAAAAAGTTTTATTG+GGG | + | chr3_2:64178504-64178523 | Msa0417060:three_prime_UTR | 20.0% |
!! | TCATTATCTTGTCAAATAAA+AGG | + | chr3_2:64178813-64178832 | Msa0417060:three_prime_UTR | 20.0% |
! | GTTATAATAACAAACTTTGG+GGG | + | chr3_2:64176608-64176627 | Msa0417060:CDS | 25.0% |
! | AGCTCTCTTAATTAATGATT+TGG | - | chr3_2:64176703-64176722 | None:intergenic | 25.0% |
!!! | AAGTTTTGCACTTTAAAGTT+TGG | + | chr3_2:64176820-64176839 | Msa0417060:intron | 25.0% |
!! | AAAGATAGGTTTTTGAATGA+TGG | + | chr3_2:64176865-64176884 | Msa0417060:intron | 25.0% |
!! | AAGATAGGTTTTTGAATGAT+GGG | + | chr3_2:64176866-64176885 | Msa0417060:intron | 25.0% |
! | CACTAAGAATTAAGATATCA+TGG | - | chr3_2:64177113-64177132 | None:intergenic | 25.0% |
! | TTTGAATTAAGGAGATTAAG+TGG | + | chr3_2:64177345-64177364 | Msa0417060:intron | 25.0% |
! | ACAAATCAAAGAATGATGTT+TGG | - | chr3_2:64177562-64177581 | None:intergenic | 25.0% |
! | CTCAAAGAGAAATTTATAAG+AGG | - | chr3_2:64177985-64178004 | None:intergenic | 25.0% |
!!! | TTTTCTTTGTTTCTAATGAC+AGG | + | chr3_2:64178315-64178334 | Msa0417060:intron | 25.0% |
!!! | TTTCTTTGTTTCTAATGACA+GGG | + | chr3_2:64178316-64178335 | Msa0417060:intron | 25.0% |
!!! | ACTTAAAGCATTGTATATGT+TGG | - | chr3_2:64178432-64178451 | None:intergenic | 25.0% |
!!! | ACTACAAAAAGTTTTATTGG+GGG | + | chr3_2:64178505-64178524 | Msa0417060:three_prime_UTR | 25.0% |
! | AGAAAATCAAAGAAACACAA+GGG | - | chr3_2:64178583-64178602 | None:intergenic | 25.0% |
! | AAGAAAATCAAAGAAACACA+AGG | - | chr3_2:64178584-64178603 | None:intergenic | 25.0% |
! | CATTTAAACAATAACTAGCT+AGG | - | chr3_2:64178760-64178779 | None:intergenic | 25.0% |
! | TATTTGACAAGATAATGACA+AGG | - | chr3_2:64178811-64178830 | None:intergenic | 25.0% |
!!! | ATTTTTTAGAGAGTTGAGAG+AGG | - | chr3_2:64176258-64176277 | None:intergenic | 30.0% |
GAGAAAATCAACAGAAACTT+CGG | - | chr3_2:64176495-64176514 | None:intergenic | 30.0% | |
GTTCTCTTCCTAATTATCAT+TGG | + | chr3_2:64176635-64176654 | Msa0417060:CDS | 30.0% | |
! | GGTTCTAACCAATGATAATT+AGG | - | chr3_2:64176646-64176665 | None:intergenic | 30.0% |
! | GAAAGTTTGAATTTGGGATT+TGG | + | chr3_2:64176769-64176788 | Msa0417060:intron | 30.0% |
GTTTGTGATGTTGAAAAGAT+AGG | + | chr3_2:64176851-64176870 | Msa0417060:intron | 30.0% | |
CTTAATTCTTAGTGCTTGTT+TGG | + | chr3_2:64177119-64177138 | Msa0417060:intron | 30.0% | |
ATGAGGTTTCATCAAAATCA+TGG | + | chr3_2:64177268-64177287 | Msa0417060:intron | 30.0% | |
! | AAACGAAAAAAGTGCATGTT+CGG | - | chr3_2:64177327-64177346 | None:intergenic | 30.0% |
GCATTCACATTTCATTTCAA+TGG | + | chr3_2:64177608-64177627 | Msa0417060:CDS | 30.0% | |
TACTTTACAATCGGTCTATT+TGG | + | chr3_2:64177826-64177845 | Msa0417060:CDS | 30.0% | |
!! | GAAAGAAGTACCAAATATCT+GGG | - | chr3_2:64178125-64178144 | None:intergenic | 30.0% |
!! | TGAAAGAAGTACCAAATATC+TGG | - | chr3_2:64178126-64178145 | None:intergenic | 30.0% |
TTCTATTAAAGGTGACGAAT+TGG | + | chr3_2:64178242-64178261 | Msa0417060:intron | 30.0% | |
ACGAATTGGAAACAGAATAA+AGG | + | chr3_2:64178256-64178275 | Msa0417060:intron | 30.0% | |
AATCATGAATGAATAAAGCC+AGG | + | chr3_2:64178284-64178303 | Msa0417060:intron | 30.0% | |
!! | TAAAGCATTGTATATGTTGG+TGG | - | chr3_2:64178429-64178448 | None:intergenic | 30.0% |
TAAGTAGCAAGTCATAATGT+TGG | + | chr3_2:64178447-64178466 | Msa0417060:exon | 30.0% | |
!!! | CTACAAAAAGTTTTATTGGG+GGG | + | chr3_2:64178506-64178525 | Msa0417060:three_prime_UTR | 30.0% |
! | CTTGCAAGATTTTTACAACA+AGG | - | chr3_2:64178612-64178631 | None:intergenic | 30.0% |
! | CTTGTTGTAAAAATCTTGCA+AGG | + | chr3_2:64178610-64178629 | Msa0417060:three_prime_UTR | 30.0% |
ATAAGAATCAAGGCGAAAGA+AGG | - | chr3_2:64176458-64176477 | None:intergenic | 35.0% | |
! | GAGCTAAATATGACACCTTT+TGG | + | chr3_2:64176718-64176737 | Msa0417060:intron | 35.0% |
! | GTTTTATCTGGAAAGGAAAG+TGG | + | chr3_2:64176942-64176961 | Msa0417060:CDS | 35.0% |
TTAGTGCTTGTTTGGTATGA+CGG | + | chr3_2:64177127-64177146 | Msa0417060:intron | 35.0% | |
TACGTGTATGTTTGGTATCA+CGG | - | chr3_2:64177178-64177197 | None:intergenic | 35.0% | |
TATTCCTGAACTGTACTTCA+AGG | - | chr3_2:64177432-64177451 | None:intergenic | 35.0% | |
AATATCAACTCTTCTTGCTG+TGG | + | chr3_2:64177448-64177467 | Msa0417060:CDS | 35.0% | |
AATAGCCAAACCAGAACAAA+TGG | - | chr3_2:64177483-64177502 | None:intergenic | 35.0% | |
AAAAACACAAACCCCTAAAC+TGG | + | chr3_2:64177520-64177539 | Msa0417060:CDS | 35.0% | |
! | GATGTTTGGTAATCTAATCG+AGG | - | chr3_2:64177548-64177567 | None:intergenic | 35.0% |
TCTAGCAACACCCTTAAAAA+AGG | - | chr3_2:64177660-64177679 | None:intergenic | 35.0% | |
TTACTTGCAGTACATCCTAT+TGG | + | chr3_2:64177733-64177752 | Msa0417060:intron | 35.0% | |
TACTTGCAGTACATCCTATT+GGG | + | chr3_2:64177734-64177753 | Msa0417060:intron | 35.0% | |
TCCATCTCATATGAAAACAG+CGG | + | chr3_2:64177771-64177790 | Msa0417060:CDS | 35.0% | |
GCTGTAGTCTACTTTACAAT+CGG | + | chr3_2:64177817-64177836 | Msa0417060:CDS | 35.0% | |
! | CTATTTGGCTACCTTTTGTT+TGG | + | chr3_2:64177841-64177860 | Msa0417060:CDS | 35.0% |
GTGTTGAATCTCCAAACAAA+AGG | - | chr3_2:64177855-64177874 | None:intergenic | 35.0% | |
GAATAGGAGTTCATCAATGT+TGG | - | chr3_2:64178010-64178029 | None:intergenic | 35.0% | |
CTATAGCAATCCCAGATATT+TGG | + | chr3_2:64178112-64178131 | Msa0417060:CDS | 35.0% | |
TGGTACTTCTTTCAGTTTCT+AGG | + | chr3_2:64178132-64178151 | Msa0417060:CDS | 35.0% | |
ACCTTAAAACAATAGTGCCA+GGG | - | chr3_2:64178191-64178210 | None:intergenic | 35.0% | |
TACCTTAAAACAATAGTGCC+AGG | - | chr3_2:64178192-64178211 | None:intergenic | 35.0% | |
ACAAAGAAAATTTAGGAGCC+TGG | - | chr3_2:64178305-64178324 | None:intergenic | 35.0% | |
ACAGGACAAAATTATAGCAC+TGG | + | chr3_2:64178361-64178380 | Msa0417060:CDS | 35.0% | |
! | AAATTCCAGGCTCATTTTGT+TGG | + | chr3_2:64178551-64178570 | Msa0417060:three_prime_UTR | 35.0% |
AAATACCAACAAAATGAGCC+TGG | - | chr3_2:64178559-64178578 | None:intergenic | 35.0% | |
TTCAAAAGTCTACAGAAACG+TGG | + | chr3_2:64178672-64178691 | Msa0417060:three_prime_UTR | 35.0% | |
TCAAAAGTCTACAGAAACGT+GGG | + | chr3_2:64178673-64178692 | Msa0417060:three_prime_UTR | 35.0% | |
ACAATAACTAGCTAGGTTCA+CGG | - | chr3_2:64178753-64178772 | None:intergenic | 35.0% | |
! | TCTCTAAAAAATCTCACCGC+CGG | + | chr3_2:64176266-64176285 | Msa0417060:five_prime_UTR | 40.0% |
!! | GGTGTTATGAAGGAAGCTTT+TGG | + | chr3_2:64176554-64176573 | Msa0417060:CDS | 40.0% |
! | TTGAGCAAAACCAAGTTGAG+TGG | + | chr3_2:64176795-64176814 | Msa0417060:intron | 40.0% |
CAAAACTTCACCACTCAACT+TGG | - | chr3_2:64176808-64176827 | None:intergenic | 40.0% | |
!! | TTGTTGCTGTTTGTGTGTGA+TGG | + | chr3_2:64176906-64176925 | Msa0417060:intron | 40.0% |
! | TTTGTGTGTGATGGAACAAC+AGG | + | chr3_2:64176915-64176934 | Msa0417060:intron | 40.0% |
! | TTGTGTGTGATGGAACAACA+GGG | + | chr3_2:64176916-64176935 | Msa0417060:intron | 40.0% |
! | ACAACAGGGGATGTTTTATC+TGG | + | chr3_2:64176930-64176949 | Msa0417060:intron | 40.0% |
! | AGGGGATGTTTTATCTGGAA+AGG | + | chr3_2:64176935-64176954 | Msa0417060:intron | 40.0% |
TTATCTGGAAAGGAAAGTGG+AGG | + | chr3_2:64176945-64176964 | Msa0417060:CDS | 40.0% | |
! | GACTTTTGCAACAGTGGTTT+GGG | + | chr3_2:64176982-64177001 | Msa0417060:CDS | 40.0% |
! | ACTTTTGCAACAGTGGTTTG+GGG | + | chr3_2:64176983-64177002 | Msa0417060:CDS | 40.0% |
GGTTCATTGGTGGAATTCAA+GGG | + | chr3_2:64177004-64177023 | Msa0417060:CDS | 40.0% | |
! | AGTTGCTCTTTTCATCACCT+TGG | + | chr3_2:64177028-64177047 | Msa0417060:CDS | 40.0% |
! | AGGAAGCATAACAAGAACCA+AGG | - | chr3_2:64177048-64177067 | None:intergenic | 40.0% |
! | GGTTCTTGTTATGCTTCCTT+TGG | + | chr3_2:64177049-64177068 | Msa0417060:CDS | 40.0% |
ACACGTTTGTACAAGACCAA+AGG | - | chr3_2:64177068-64177087 | None:intergenic | 40.0% | |
!! | TTGGTCTTGTACAAACGTGT+AGG | + | chr3_2:64177068-64177087 | Msa0417060:CDS | 40.0% |
TAGTGCTTGTTTGGTATGAC+GGG | + | chr3_2:64177128-64177147 | Msa0417060:intron | 40.0% | |
! | ACATGGACTACGTGTATGTT+TGG | - | chr3_2:64177186-64177205 | None:intergenic | 40.0% |
ACATACACGTAGTCCATGTT+CGG | + | chr3_2:64177187-64177206 | Msa0417060:intron | 40.0% | |
!!! | TCGGATTGGCAGTGAATTTT+CGG | + | chr3_2:64177206-64177225 | Msa0417060:intron | 40.0% |
GAATCCTTGAAGTACAGTTC+AGG | + | chr3_2:64177425-64177444 | Msa0417060:intron | 40.0% | |
! | GCATTTGTTGCCATTTGTTC+TGG | + | chr3_2:64177470-64177489 | Msa0417060:CDS | 40.0% |
! | TGTTGCCATTTGTTCTGGTT+TGG | + | chr3_2:64177475-64177494 | Msa0417060:CDS | 40.0% |
! | TGGTTTGGCTATTGTTGCTT+TGG | + | chr3_2:64177490-64177509 | Msa0417060:CDS | 40.0% |
TAATCGAGGAACCAGTTTAG+GGG | - | chr3_2:64177534-64177553 | None:intergenic | 40.0% | |
CTAATCGAGGAACCAGTTTA+GGG | - | chr3_2:64177535-64177554 | None:intergenic | 40.0% | |
TCTAATCGAGGAACCAGTTT+AGG | - | chr3_2:64177536-64177555 | None:intergenic | 40.0% | |
!! | ACCGCTGTTTTCATATGAGA+TGG | - | chr3_2:64177775-64177794 | None:intergenic | 40.0% |
CTATGCACTCCACATTATGT+TGG | + | chr3_2:64177954-64177973 | Msa0417060:CDS | 40.0% | |
GAGGGAATACCAACATAATG+TGG | - | chr3_2:64177966-64177985 | None:intergenic | 40.0% | |
! | CACAAATCTCTTGTTGTCTG+TGG | - | chr3_2:64178052-64178071 | None:intergenic | 40.0% |
GATTGCTATAGCAGCAAGAT+AGG | - | chr3_2:64178103-64178122 | None:intergenic | 40.0% | |
!! | TCCCTGGCACTATTGTTTTA+AGG | + | chr3_2:64178187-64178206 | Msa0417060:CDS | 40.0% |
TCTTGGCATATCAACAAGAC+AGG | + | chr3_2:64178343-64178362 | Msa0417060:CDS | 40.0% | |
!!! | AAAGTTTTATTGGGGGGAGT+TGG | + | chr3_2:64178512-64178531 | Msa0417060:three_prime_UTR | 40.0% |
!!! | AAGTTTTATTGGGGGGAGTT+GGG | + | chr3_2:64178513-64178532 | Msa0417060:three_prime_UTR | 40.0% |
TCTCATTACCATCATCGCAT+GGG | - | chr3_2:64178840-64178859 | None:intergenic | 40.0% | |
TTCTCATTACCATCATCGCA+TGG | - | chr3_2:64178841-64178860 | None:intergenic | 40.0% | |
GAGAGTTGAGAGAGGAAATG+TGG | - | chr3_2:64176250-64176269 | None:intergenic | 45.0% | |
! | CTCTAAAAAATCTCACCGCC+GGG | + | chr3_2:64176267-64176286 | Msa0417060:five_prime_UTR | 45.0% |
GATTTGATCCGGTCAAGAGA+GGG | - | chr3_2:64176325-64176344 | None:intergenic | 45.0% | |
TCTCTTGACCGGATCAAATC+CGG | + | chr3_2:64176325-64176344 | Msa0417060:CDS | 45.0% | |
AATGTCGCCACCAGCATAAT+CGG | + | chr3_2:64176383-64176402 | Msa0417060:CDS | 45.0% | |
CTCCGGAATCATGTCAATTC+CGG | + | chr3_2:64176406-64176425 | Msa0417060:CDS | 45.0% | |
! | CTCATGCGTTTTACACATGC+CGG | + | chr3_2:64176512-64176531 | Msa0417060:CDS | 45.0% |
!! | GACGTACTCTGGTGTTATGA+AGG | + | chr3_2:64176544-64176563 | Msa0417060:CDS | 45.0% |
!!! | AAGGAAGCTTTTGGTTCCGT+TGG | + | chr3_2:64176563-64176582 | Msa0417060:CDS | 45.0% |
TTGAGCGCTTAAAGCTCCAA+CGG | - | chr3_2:64176582-64176601 | None:intergenic | 45.0% | |
! | TGTGTGTGATGGAACAACAG+GGG | + | chr3_2:64176917-64176936 | Msa0417060:intron | 45.0% |
! | ACTTGGGACTTTTGCAACAG+TGG | + | chr3_2:64176976-64176995 | Msa0417060:CDS | 45.0% |
! | GGACTTTTGCAACAGTGGTT+TGG | + | chr3_2:64176981-64177000 | Msa0417060:CDS | 45.0% |
! | AACAGTGGTTTGGGGTTCAT+TGG | + | chr3_2:64176991-64177010 | Msa0417060:CDS | 45.0% |
GGGTTCATTGGTGGAATTCA+AGG | + | chr3_2:64177003-64177022 | Msa0417060:CDS | 45.0% | |
!! | TTTGGTATGACGGGCTTTGT+CGG | + | chr3_2:64177137-64177156 | Msa0417060:intron | 45.0% |
ATTCACTGCCAATCCGAACA+TGG | - | chr3_2:64177203-64177222 | None:intergenic | 45.0% | |
!! | GCTATTGTTGCTTTGGTGCA+AGG | + | chr3_2:64177497-64177516 | Msa0417060:CDS | 45.0% |
GTGAATGCTGTGACTACAAC+AGG | - | chr3_2:64177596-64177615 | None:intergenic | 45.0% | |
CTTGCAAGCTCAAACCCAAT+AGG | - | chr3_2:64177751-64177770 | None:intergenic | 45.0% | |
!! | CAGAATGCTGATTCTGCTGT+TGG | + | chr3_2:64177901-64177920 | Msa0417060:CDS | 45.0% |
ATCAACAACAGCACTATGCC+TGG | + | chr3_2:64178155-64178174 | Msa0417060:CDS | 45.0% | |
!!! | TGCCTGGCTTTTATTTTCCC+TGG | + | chr3_2:64178171-64178190 | Msa0417060:CDS | 45.0% |
TGCCAGGGAAAATAAAAGCC+AGG | - | chr3_2:64178176-64178195 | None:intergenic | 45.0% | |
TCTAATGACAGGGATGCTCT+TGG | + | chr3_2:64178326-64178345 | Msa0417060:intron | 45.0% | |
!!! | AGTTTTATTGGGGGGAGTTG+GGG | + | chr3_2:64178514-64178533 | Msa0417060:three_prime_UTR | 45.0% |
ACAGAAACGTGGGACAAAGT+TGG | + | chr3_2:64178683-64178702 | Msa0417060:three_prime_UTR | 45.0% | |
CAGAAACGTGGGACAAAGTT+GGG | + | chr3_2:64178684-64178703 | Msa0417060:three_prime_UTR | 45.0% | |
AGAAACGTGGGACAAAGTTG+GGG | + | chr3_2:64178685-64178704 | Msa0417060:three_prime_UTR | 45.0% | |
TAAAAGGTCCCATGCGATGA+TGG | + | chr3_2:64178829-64178848 | Msa0417060:three_prime_UTR | 45.0% | |
GGATTTGATCCGGTCAAGAG+AGG | - | chr3_2:64176326-64176345 | None:intergenic | 50.0% | |
! | GCTGGTGGCGACATTGAATA+CGG | - | chr3_2:64176378-64176397 | None:intergenic | 50.0% |
CGCCGGAATTGACATGATTC+CGG | - | chr3_2:64176411-64176430 | None:intergenic | 50.0% | |
! | CCGAGAACTTTGAGAATCGC+CGG | - | chr3_2:64176428-64176447 | None:intergenic | 50.0% |
CCGGCGATTCTCAAAGTTCT+CGG | + | chr3_2:64176425-64176444 | Msa0417060:CDS | 50.0% | |
CACGGCGACGATAAGAATCA+AGG | - | chr3_2:64176468-64176487 | None:intergenic | 50.0% | |
AACAGAAACTTCGGCGAGCA+CGG | - | chr3_2:64176486-64176505 | None:intergenic | 50.0% | |
AGAGTACGTCGTGGTTACAC+CGG | - | chr3_2:64176534-64176553 | None:intergenic | 50.0% | |
CATAACACCAGAGTACGTCG+TGG | - | chr3_2:64176543-64176562 | None:intergenic | 50.0% | |
AAGTGGAGGTGAAGTGCACT+TGG | + | chr3_2:64176959-64176978 | Msa0417060:CDS | 50.0% | |
AGTGGAGGTGAAGTGCACTT+GGG | + | chr3_2:64176960-64176979 | Msa0417060:CDS | 50.0% | |
! | AGTGGTTTGGGGTTCATTGG+TGG | + | chr3_2:64176994-64177013 | Msa0417060:CDS | 50.0% |
CACGTAGTCCATGTTCGGAT+TGG | + | chr3_2:64177192-64177211 | Msa0417060:intron | 50.0% | |
GCAGAGGCTTCTTAGGGAAT+AGG | - | chr3_2:64178026-64178045 | None:intergenic | 50.0% | |
TGGCTAGCAGAGGCTTCTTA+GGG | - | chr3_2:64178032-64178051 | None:intergenic | 50.0% | |
TTGTTGTCTGTGGCTAGCAG+AGG | - | chr3_2:64178042-64178061 | None:intergenic | 50.0% | |
GTGGAAGGGGCAAAAATTCC+AGG | + | chr3_2:64178538-64178557 | Msa0417060:three_prime_UTR | 50.0% | |
!! | AGACGGTGTTGGTGACATCC+CGG | - | chr3_2:64176288-64176307 | None:intergenic | 55.0% |
ATGTCACCAACACCGTCTGC+CGG | + | chr3_2:64176290-64176309 | Msa0417060:CDS | 55.0% | |
!! | CAAGAGAGGGACGTTGACTC+CGG | - | chr3_2:64176312-64176331 | None:intergenic | 55.0% |
GTCAACGTCCCTCTCTTGAC+CGG | + | chr3_2:64176314-64176333 | Msa0417060:CDS | 55.0% | |
CTTGACCGGATCAAATCCGG+CGG | + | chr3_2:64176328-64176347 | Msa0417060:CDS | 55.0% | |
CGACATTGAATACGGCGCCA+GGG | - | chr3_2:64176370-64176389 | None:intergenic | 55.0% | |
GATTCCGGAGCCGATTATGC+TGG | - | chr3_2:64176396-64176415 | None:intergenic | 55.0% | |
GGTGTAACCACGACGTACTC+TGG | + | chr3_2:64176533-64176552 | Msa0417060:CDS | 55.0% | |
GTGGCTAGCAGAGGCTTCTT+AGG | - | chr3_2:64178033-64178052 | None:intergenic | 55.0% | |
TTGACTCCGGCAGACGGTGT+TGG | - | chr3_2:64176299-64176318 | None:intergenic | 60.0% | |
AACCGCCGCCGGATTTGATC+CGG | - | chr3_2:64176336-64176355 | None:intergenic | 60.0% | |
ATTGAACCAGGAACCGCCGC+CGG | - | chr3_2:64176347-64176366 | None:intergenic | 60.0% | |
GCGGTTCCTGGTTCAATCCC+TGG | + | chr3_2:64176350-64176369 | Msa0417060:CDS | 60.0% | |
GCGACATTGAATACGGCGCC+AGG | - | chr3_2:64176371-64176390 | None:intergenic | 60.0% | |
! | GCCACCAGCATAATCGGCTC+CGG | + | chr3_2:64176389-64176408 | Msa0417060:CDS | 60.0% |
TCCGGAGCCGATTATGCTGG+TGG | - | chr3_2:64176393-64176412 | None:intergenic | 60.0% | |
!! | CGGTGTTGGTGACATCCCGG+CGG | - | chr3_2:64176285-64176304 | None:intergenic | 65.0% |
!! | GGGACGTTGACTCCGGCAGA+CGG | - | chr3_2:64176305-64176324 | None:intergenic | 65.0% |
GACCGGATCAAATCCGGCGG+CGG | + | chr3_2:64176331-64176350 | Msa0417060:CDS | 65.0% | |
TCAAATCCGGCGGCGGTTCC+TGG | + | chr3_2:64176338-64176357 | Msa0417060:CDS | 65.0% | |
ACGGCGCCAGGGATTGAACC+AGG | - | chr3_2:64176359-64176378 | None:intergenic | 65.0% | |
TATTGGGGGGAGTTGGGGCG+TGG | + | chr3_2:64178519-64178538 | Msa0417060:three_prime_UTR | 65.0% | |
GGGGGAGTTGGGGCGTGGAA+GGG | + | chr3_2:64178524-64178543 | Msa0417060:three_prime_UTR | 70.0% | |
GGGGAGTTGGGGCGTGGAAG+GGG | + | chr3_2:64178525-64178544 | Msa0417060:three_prime_UTR | 70.0% | |
GGGGGGAGTTGGGGCGTGGA+AGG | + | chr3_2:64178523-64178542 | Msa0417060:three_prime_UTR | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_2 | gene | 64176206 | 64178874 | 64176206 | ID=Msa0417060;Name=Msa0417060 |
chr3_2 | mRNA | 64176206 | 64178874 | 64176206 | ID=Msa0417060-mRNA-1;Parent=Msa0417060;Name=Msa0417060-mRNA-1;_AED=0.20;_eAED=0.20;_QI=84|1|1|1|0.8|0.66|6|391|438 |
chr3_2 | exon | 64176206 | 64176656 | 64176206 | ID=Msa0417060-mRNA-1:exon:14115;Parent=Msa0417060-mRNA-1 |
chr3_2 | exon | 64176937 | 64177089 | 64176937 | ID=Msa0417060-mRNA-1:exon:14116;Parent=Msa0417060-mRNA-1 |
chr3_2 | exon | 64177426 | 64177629 | 64177426 | ID=Msa0417060-mRNA-1:exon:14117;Parent=Msa0417060-mRNA-1 |
chr3_2 | exon | 64177743 | 64178208 | 64177743 | ID=Msa0417060-mRNA-1:exon:14118;Parent=Msa0417060-mRNA-1 |
chr3_2 | exon | 64178337 | 64178785 | 64178337 | ID=Msa0417060-mRNA-1:exon:14119;Parent=Msa0417060-mRNA-1 |
chr3_2 | exon | 64178806 | 64178874 | 64178806 | ID=Msa0417060-mRNA-1:exon:14120;Parent=Msa0417060-mRNA-1 |
chr3_2 | five_prime_UTR | 64176206 | 64176289 | 64176206 | ID=Msa0417060-mRNA-1:five_prime_utr;Parent=Msa0417060-mRNA-1 |
chr3_2 | CDS | 64176290 | 64176656 | 64176290 | ID=Msa0417060-mRNA-1:cds;Parent=Msa0417060-mRNA-1 |
chr3_2 | CDS | 64176937 | 64177089 | 64176937 | ID=Msa0417060-mRNA-1:cds;Parent=Msa0417060-mRNA-1 |
chr3_2 | CDS | 64177426 | 64177629 | 64177426 | ID=Msa0417060-mRNA-1:cds;Parent=Msa0417060-mRNA-1 |
chr3_2 | CDS | 64177743 | 64178208 | 64177743 | ID=Msa0417060-mRNA-1:cds;Parent=Msa0417060-mRNA-1 |
chr3_2 | CDS | 64178337 | 64178463 | 64178337 | ID=Msa0417060-mRNA-1:cds;Parent=Msa0417060-mRNA-1 |
chr3_2 | three_prime_UTR | 64178464 | 64178785 | 64178464 | ID=Msa0417060-mRNA-1:three_prime_utr;Parent=Msa0417060-mRNA-1 |
chr3_2 | three_prime_UTR | 64178806 | 64178874 | 64178806 | ID=Msa0417060-mRNA-1:three_prime_utr;Parent=Msa0417060-mRNA-1 |
Gene Sequence |
Protein sequence |