AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0606230


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0606230 MtrunA17_Chr4g0035761 97.010 301 9 0 18 318 251 551 0.0 588
Msa0606230 MtrunA17_Chr4g0035811 86.000 300 42 0 18 317 276 575 0.0 535
Msa0606230 MtrunA17_Chr4g0035791 83.000 300 51 0 18 317 248 547 0.0 513
Msa0606230 MtrunA17_Chr4g0035741 75.333 300 74 0 18 317 250 549 1.17e-162 464
Msa0606230 MtrunA17_Chr4g0035751 74.653 288 72 1 18 305 237 523 2.16e-150 432
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0606230 AT2G21340.2 66.667 297 98 1 18 313 256 552 6.43e-144 417
Msa0606230 AT2G21340.1 66.667 297 98 1 18 313 259 555 9.48e-144 417
Msa0606230 AT4G39030.1 60.927 302 117 1 18 318 242 543 8.83e-126 370

Find 129 sgRNAs with CRISPR-Local

Find 376 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGGGATTGCTGGGGCTGCT+TGG 0.217868 4_2:+52370511 Msa0606230:CDS
CTGGACCTGCTATTGGTCTT+TGG 0.222999 4_2:+52367998 Msa0606230:five_prime_UTR
TTCCTGAACTAATATTAAAA+TGG 0.224292 4_2:-52373146 None:intergenic
CTACTGTTCACAATGTTATT+TGG 0.227670 4_2:+52369327 Msa0606230:five_prime_UTR
TGGGATTGCTGGGGCTGCTT+GGG 0.250299 4_2:+52370512 Msa0606230:CDS
AAGGAAATTGTATTGTTTAC+TGG 0.254805 4_2:+52367979 Msa0606230:five_prime_UTR
ATTTGTCTCATTGGTGTTAA+AGG 0.256466 4_2:+52370944 Msa0606230:CDS
TCAATTGAACTTGCTGCTTT+AGG 0.260915 4_2:+52368075 Msa0606230:five_prime_UTR
ATCATTCTGTGCAGATATTT+AGG 0.264256 4_2:+52370486 Msa0606230:CDS
GCTGTTGCTAGTATTATAAA+TGG 0.276859 4_2:+52370453 Msa0606230:CDS
GTCGATTGCTACGTCGAATA+TGG 0.279146 4_2:+52368244 Msa0606230:five_prime_UTR
AAACTTCGCTGATTTGTTCT+TGG 0.286580 4_2:-52367885 None:intergenic
TTCAAGTGCTCTTGTACTAT+TGG 0.286743 4_2:+52372787 Msa0606230:CDS
AGTTGAAGACTGTATAGTTT+TGG 0.291328 4_2:+52373119 Msa0606230:exon
TGCTCCTGTATTTGTCTCAT+TGG 0.309006 4_2:+52370935 Msa0606230:CDS
TACTTGTTGAGCAGAATATA+TGG 0.313969 4_2:+52367947 Msa0606230:five_prime_UTR
ATCAGAATGTGTTACAAAAT+AGG 0.320851 4_2:+52373214 Msa0606230:three_prime_UTR
TAGCAACAGCCAAAGCCTTC+AGG 0.320978 4_2:-52370440 None:intergenic
TTGGGGACCCCTGAAGGCTT+TGG 0.326543 4_2:+52370431 Msa0606230:CDS
TGCTACTGCACTTGCTAAAC+AGG 0.330445 4_2:+52368268 Msa0606230:five_prime_UTR
CTCATTGATACTGCTGTTGT+TGG 0.336581 4_2:+52368042 Msa0606230:five_prime_UTR
TTGTTTACTGGACCTGCTAT+TGG 0.337810 4_2:+52367991 Msa0606230:five_prime_UTR
TTTCCCTTGTTGGATTTCAA+TGG 0.339549 4_2:+52372928 Msa0606230:CDS
CCCTCCAGGCCGATAGTTGC+AGG 0.339778 4_2:-52371909 None:intergenic
CATAAATGATTGAGCAGTTT+GGG 0.341891 4_2:-52371275 None:intergenic
GATTGAGCAGTTTGGGAGAT+AGG 0.343850 4_2:-52371268 None:intergenic
GCATAAATGATTGAGCAGTT+TGG 0.352223 4_2:-52371276 None:intergenic
ATCCCTTCTCGATTAGAGTT+TGG 0.363989 4_2:-52370851 None:intergenic
TATTTAGGCTATGGGATTGC+TGG 0.365085 4_2:+52370501 Msa0606230:CDS
GCTGATTTGTTCTTGGTGTT+CGG 0.365633 4_2:-52367878 None:intergenic
TTAACTATTGGAGCTATACT+TGG 0.389308 4_2:+52371597 Msa0606230:CDS
CGGCCTGGAGGGAACATTGC+TGG 0.389943 4_2:+52371920 Msa0606230:CDS
TTTGAAGTACGCGAGGTGTT+AGG 0.390174 4_2:-52367834 None:intergenic
TTCCCTTGTTGGATTTCAAT+GGG 0.393428 4_2:+52372929 Msa0606230:CDS
GCTATTGGTCTTTGGTTATG+TGG 0.403668 4_2:+52368006 Msa0606230:five_prime_UTR
TGGGGCTGCTTGGGCTACAT+TGG 0.406685 4_2:+52370521 Msa0606230:CDS
TCTTGGTATGAAAGACTCTT+GGG 0.418828 4_2:+52370413 Msa0606230:CDS
CTGTGCAGATATTTAGGCTA+TGG 0.424595 4_2:+52370492 Msa0606230:CDS
GTCTTGGTATGAAAGACTCT+TGG 0.428478 4_2:+52370412 Msa0606230:CDS
TAATGCGTTGGTTAGTTGAA+TGG 0.431478 4_2:-52367777 None:intergenic
GGAACCCGGAGCGACGGTTC+CGG 0.433638 4_2:-52367813 None:intergenic
GCTAGTATTATAAATGGAAT+TGG 0.434795 4_2:+52370459 Msa0606230:CDS
CAGATCTTACGAAGCAGATA+TGG 0.438064 4_2:+52372888 Msa0606230:intron
TTTCCTTCTCCATTCCTTCA+GGG 0.438137 4_2:+52370883 Msa0606230:CDS
GACAGGCTAGGTCGCTTCTA+AGG 0.443810 4_2:+52371568 Msa0606230:intron
ACCTGATCAGATGGTCATCC+AGG 0.449016 4_2:+52371677 Msa0606230:CDS
GTACGGAGTAAATCGGAGTT+TGG 0.455255 4_2:+52371309 Msa0606230:CDS
GAAAAGAAAGAAAGAAAGAA+TGG 0.455536 4_2:-52367613 None:intergenic
CGAGCCGGAACCGTCGCTCC+GGG 0.456395 4_2:+52367809 Msa0606230:five_prime_UTR
TCGAGCCGGAACCGTCGCTC+CGG 0.456638 4_2:+52367808 Msa0606230:five_prime_UTR
AAATACCACTGGGAGATAGA+AGG 0.457479 4_2:-52373060 None:intergenic
TTTGCTCTTGCAGGCTGGAC+GGG 0.459020 4_2:+52372724 Msa0606230:intron
TGGTGGTGGTGGTGTTGAGA+AGG 0.459300 4_2:-52367747 None:intergenic
TCCTGGATGACCATCTGATC+AGG 0.465745 4_2:-52371678 None:intergenic
ATGGATAACGGTGGTGGTGG+TGG 0.466496 4_2:-52367758 None:intergenic
TAGTTGGAACATTTGTTCCT+TGG 0.471829 4_2:+52371634 Msa0606230:CDS
TGTGCAGATATTTAGGCTAT+GGG 0.478585 4_2:+52370493 Msa0606230:CDS
AGCAACAGCCAAAGCCTTCA+GGG 0.480715 4_2:-52370439 None:intergenic
GGTGGTGGTGGTGTTGAGAA+GGG 0.483382 4_2:-52367746 None:intergenic
GATTGAAATGCAGTGAGAAT+TGG 0.486132 4_2:-52367657 None:intergenic
TTCTGAGTATAAAATACCAC+TGG 0.488881 4_2:-52373071 None:intergenic
TGATCAGGTGTAAATGTGTA+GGG 0.493363 4_2:-52371663 None:intergenic
AGTTGATGTACGGAGTAAAT+CGG 0.494109 4_2:+52371302 Msa0606230:CDS
CTTCTCCATTCCTTCAGGGA+AGG 0.497167 4_2:+52370887 Msa0606230:CDS
ATTTGCTCTTGCAGGCTGGA+CGG 0.501799 4_2:+52372723 Msa0606230:intron
AGCACAAGAAGAAGAAATGA+AGG 0.503848 4_2:+52367921 Msa0606230:five_prime_UTR
GACACCTGCAACTATCGGCC+TGG 0.506576 4_2:+52371905 Msa0606230:CDS
TGCAGCTAATATTTATGTCC+AGG 0.506763 4_2:+52369525 Msa0606230:exon
ATTTAGGCTATGGGATTGCT+GGG 0.507725 4_2:+52370502 Msa0606230:CDS
CATTGGATTAGTATGTGGCT+TGG 0.515356 4_2:+52369299 Msa0606230:five_prime_UTR
AACACCAATGAGACAAATAC+AGG 0.516398 4_2:-52370939 None:intergenic
AGACTCTTGGGGACCCCTGA+AGG 0.519624 4_2:+52370425 Msa0606230:CDS
TGAATGGATAACGGTGGTGG+TGG 0.521123 4_2:-52367761 None:intergenic
CACATTTACACCTGATCAGA+TGG 0.521609 4_2:+52371668 Msa0606230:CDS
GAATATATGGATTCAGATGA+AGG 0.523724 4_2:+52367960 Msa0606230:five_prime_UTR
AAATTCCTTCCCTGAAGGAA+TGG 0.526751 4_2:-52370892 None:intergenic
TTTATAAGTTTGTCAACGAG+TGG 0.530943 4_2:+52372755 Msa0606230:CDS
TGGGAGATAGAAGGCGCAGA+AGG 0.531589 4_2:-52373051 None:intergenic
GGTACTAAATGTACATTTGT+CGG 0.536146 4_2:-52369502 None:intergenic
GGAGCGACGGTTCCGGCTCG+AGG 0.539090 4_2:-52367806 None:intergenic
CTGATCAGGTGTAAATGTGT+AGG 0.543118 4_2:-52371664 None:intergenic
TAACTATTGGAGCTATACTT+GGG 0.544847 4_2:+52371598 Msa0606230:CDS
TCTAATCGAGAAGGGATACA+AGG 0.547657 4_2:+52370857 Msa0606230:CDS
TTTATGCCTGAGTTGATGTA+CGG 0.549209 4_2:+52371292 Msa0606230:CDS
AGTAAATCGGAGTTTGGTAA+AGG 0.549929 4_2:+52371315 Msa0606230:CDS
TTTACGTTGTGCACAGTATG+TGG 0.550044 4_2:+52371241 Msa0606230:CDS
ATCAATGGGTACACATGCAA+CGG 0.561868 4_2:+52371086 Msa0606230:CDS
GACAGAAATTCCTTCCCTGA+AGG 0.564886 4_2:-52370897 None:intergenic
ATACCAGCAATGTTCCCTCC+AGG 0.568305 4_2:-52371923 None:intergenic
TATGTTTGTGTAGGATAGGG+AGG 0.568560 4_2:+52369245 Msa0606230:intron
TTTGGTGCGACAACGCTCGC+AGG 0.573276 4_2:+52369345 Msa0606230:five_prime_UTR
GATATGGTCTGCAAGGCTGT+TGG 0.575901 4_2:+52372904 Msa0606230:CDS
CGAAGCAGATATGGTCTGCA+AGG 0.576131 4_2:+52372897 Msa0606230:CDS
GAAGGGAATGAAGAGGTAAG+TGG 0.576296 4_2:-52367729 None:intergenic
TTGGTTAGTTGAATGGATAA+CGG 0.577567 4_2:-52367770 None:intergenic
CAAGACTGCGTGATAAAATG+TGG 0.580884 4_2:-52370395 None:intergenic
GAGCCAAACTCTAATCGAGA+AGG 0.583150 4_2:+52370848 Msa0606230:CDS
TATACTCAGAAGATGTAAGC+CGG 0.586052 4_2:+52373083 Msa0606230:CDS
CCTGCAACTATCGGCCTGGA+GGG 0.591317 4_2:+52371909 Msa0606230:CDS
TGGACATAAATATTAGCTGC+AGG 0.592382 4_2:-52369523 None:intergenic
AGTTGAATGGATAACGGTGG+TGG 0.599371 4_2:-52367764 None:intergenic
CTTCCCTGAAGGAATGGAGA+AGG 0.600933 4_2:-52370886 None:intergenic
TACGCGAGGTGTTAGGAACC+CGG 0.602468 4_2:-52367827 None:intergenic
TCGAGGATGTAATAATGCGT+TGG 0.602752 4_2:-52367789 None:intergenic
GTGTTAGGAACCCGGAGCGA+CGG 0.606908 4_2:-52367819 None:intergenic
GTGTGATCATGCAGATGCAT+AGG 0.607243 4_2:+52371850 Msa0606230:intron
AGCCAAACTCTAATCGAGAA+GGG 0.607743 4_2:+52370849 Msa0606230:CDS
GATACTGCTGTTGTTGGTCA+AGG 0.613645 4_2:+52368048 Msa0606230:five_prime_UTR
GTGGTGACACCTGCAACTAT+CGG 0.619034 4_2:+52371900 Msa0606230:CDS
GGGAGATAGAAGGCGCAGAA+GGG 0.619859 4_2:-52373050 None:intergenic
ACCTGCAACTATCGGCCTGG+AGG 0.621277 4_2:+52371908 Msa0606230:CDS
GGGAATGAAGAGGTAAGTGG+CGG 0.628941 4_2:-52367726 None:intergenic
TTTAGGCTATGGGATTGCTG+GGG 0.629860 4_2:+52370503 Msa0606230:CDS
GTATCAATGAGACTCATCAA+TGG 0.630837 4_2:-52368030 None:intergenic
TTTACTCCGTACATCAACTC+AGG 0.639144 4_2:-52371298 None:intergenic
CATAACCAAAGACCAATAGC+AGG 0.639786 4_2:-52368003 None:intergenic
AGAAGATGTAAGCCGGTATG+CGG 0.655597 4_2:+52373090 Msa0606230:CDS
GCATTATTACATCCTCGAGC+CGG 0.659051 4_2:+52367794 Msa0606230:five_prime_UTR
GATCAGGTGTAAATGTGTAG+GGG 0.673218 4_2:-52371662 None:intergenic
TTACCCATTGAAATCCAACA+AGG 0.673307 4_2:-52372932 None:intergenic
GCAACAGCCAAAGCCTTCAG+GGG 0.673686 4_2:-52370438 None:intergenic
AATGTGTAGGGGAATAACCA+AGG 0.674285 4_2:-52371651 None:intergenic
CTTGGTATGAAAGACTCTTG+GGG 0.674911 4_2:+52370414 Msa0606230:CDS
TACCCATTGAAATCCAACAA+GGG 0.682977 4_2:-52372931 None:intergenic
TCTGAGTATAAAATACCACT+GGG 0.691613 4_2:-52373070 None:intergenic
GTTAGTTGAATGGATAACGG+TGG 0.692567 4_2:-52367767 None:intergenic
CTGCGCCTTCTATCTCCCAG+TGG 0.701911 4_2:+52373055 Msa0606230:CDS
GTGTTGAGAAGGGAATGAAG+AGG 0.725276 4_2:-52367736 None:intergenic
TGATCAGATGGTCATCCAGG+AGG 0.731780 4_2:+52371680 Msa0606230:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATTTTCTTTTTCTTA+TGG + chr4_2:52368601-52368620 Msa0606230:intron 10.0%
!!! TTTTATTTTCTTTTTCTTAT+GGG + chr4_2:52368602-52368621 Msa0606230:intron 10.0%
!!! TCTTTTAATAGTAAATATAA+AGG + chr4_2:52369664-52369683 Msa0606230:intron 10.0%
!! CAATATATAATATAAATTCA+GGG - chr4_2:52371549-52371568 None:intergenic 10.0%
!! TCAATATATAATATAAATTC+AGG - chr4_2:52371550-52371569 None:intergenic 10.0%
!! AATTTATATTATATATTGAC+AGG + chr4_2:52371551-52371570 Msa0606230:intron 10.0%
!!! TTGTAAATATTCTAAGTTTT+TGG + chr4_2:52368429-52368448 Msa0606230:intron 15.0%
!! ATTCATACAATAAAATAAGA+CGG + chr4_2:52369115-52369134 Msa0606230:intron 15.0%
!! AGAAATCATAAAACAATTTA+TGG + chr4_2:52369613-52369632 Msa0606230:intron 15.0%
!!! TCAAATTTTATTAAGTAACA+CGG - chr4_2:52370108-52370127 None:intergenic 15.0%
!!! CATTTTCAATTAAATATAAG+AGG - chr4_2:52370213-52370232 None:intergenic 15.0%
!! GTCAGTTTAAATAAAAATTT+AGG - chr4_2:52370254-52370273 None:intergenic 15.0%
!! ATTAGTAATATCATAACTAT+TGG + chr4_2:52370344-52370363 Msa0606230:intron 15.0%
!! TTAGTAATATCATAACTATT+GGG + chr4_2:52370345-52370364 Msa0606230:intron 15.0%
!! TAATAAGTAATTATTGTTGT+AGG + chr4_2:52370587-52370606 Msa0606230:intron 15.0%
!! ATTTCAGTAAATTGAAAATA+GGG - chr4_2:52370756-52370775 None:intergenic 15.0%
!! TATTTCAGTAAATTGAAAAT+AGG - chr4_2:52370757-52370776 None:intergenic 15.0%
!!! AAAATATTTTGTTCTATTTG+TGG + chr4_2:52370973-52370992 Msa0606230:intron 15.0%
!! ATGTTTGGATTTATTATTTA+AGG + chr4_2:52371963-52371982 Msa0606230:intron 15.0%
!! ATTTATTATTGAACAATTTC+TGG + chr4_2:52372185-52372204 Msa0606230:intron 15.0%
!!! ATATAACAAGTGTTATTTTA+AGG + chr4_2:52372681-52372700 Msa0606230:intron 15.0%
!!! TTTTGTATACCATAAGAAAA+GGG - chr4_2:52368308-52368327 None:intergenic 20.0%
!!! ATTTTGTATACCATAAGAAA+AGG - chr4_2:52368309-52368328 None:intergenic 20.0%
!!! TTTTATTCTCCTTTTCTTAT+TGG + chr4_2:52368635-52368654 Msa0606230:intron 20.0%
!!! ATTTTCTATCCAATAAGAAA+AGG - chr4_2:52368647-52368666 None:intergenic 20.0%
!! AAATTAATGATATAGAAGAG+AGG + chr4_2:52368745-52368764 Msa0606230:intron 20.0%
!! AATAATATCCAAAAGTTTGA+TGG - chr4_2:52369145-52369164 None:intergenic 20.0%
!!! ACAATCTTAATTTGAATTGA+AGG - chr4_2:52369572-52369591 None:intergenic 20.0%
!! AGTAAATATAAAGGTTTGTA+TGG + chr4_2:52369673-52369692 Msa0606230:intron 20.0%
!! ACATATATTGAAATTGATCA+AGG + chr4_2:52369762-52369781 Msa0606230:intron 20.0%
!! CATATATTGAAATTGATCAA+GGG + chr4_2:52369763-52369782 Msa0606230:intron 20.0%
!! TGAACATATGTTTATAAGTA+GGG + chr4_2:52369957-52369976 Msa0606230:intron 20.0%
!! CATTAACTAATTATGATATG+TGG - chr4_2:52370716-52370735 None:intergenic 20.0%
!! AAACTTTCTGTTACATTTAA+AGG - chr4_2:52371021-52371040 None:intergenic 20.0%
!! TGAATATACATAACAATGTA+TGG - chr4_2:52371520-52371539 None:intergenic 20.0%
!!! AATAAACAGGTTTGAAATTA+AGG + chr4_2:52371800-52371819 Msa0606230:intron 20.0%
!! AAGTATTATGAATTTATGAG+AGG - chr4_2:52372543-52372562 None:intergenic 20.0%
!! AATTCATAATACTTCATAAG+AGG + chr4_2:52372549-52372568 Msa0606230:intron 20.0%
!! AAATTGCGTTACATAAAAAT+TGG - chr4_2:52372860-52372879 None:intergenic 20.0%
!! TTTCATAAACATATTCTAAC+AGG + chr4_2:52372992-52373011 Msa0606230:intron 20.0%
!! TTCATAAACATATTCTAACA+GGG + chr4_2:52372993-52373012 Msa0606230:intron 20.0%
!! TTCCTGAACTAATATTAAAA+TGG - chr4_2:52373149-52373168 None:intergenic 20.0%
! GAAAAGAAAGAAAGAAAGAA+TGG - chr4_2:52367616-52367635 None:intergenic 25.0%
!! CTTTTCTTTCACTTCAAAAA+TGG + chr4_2:52367630-52367649 Msa0606230:five_prime_UTR 25.0%
! AAGGAAATTGTATTGTTTAC+TGG + chr4_2:52367979-52367998 Msa0606230:five_prime_UTR 25.0%
! TAATGTATATGTGATGTGTA+TGG + chr4_2:52368150-52368169 Msa0606230:intron 25.0%
!!! TACTGTTTTTTGCGATTATT+TGG + chr4_2:52368202-52368221 Msa0606230:five_prime_UTR 25.0%
!!! ACTGTTTTTTGCGATTATTT+GGG + chr4_2:52368203-52368222 Msa0606230:five_prime_UTR 25.0%
! TTTGTATACCATAAGAAAAG+GGG - chr4_2:52368307-52368326 None:intergenic 25.0%
! TCCATTAACTTATCTGTTAT+CGG - chr4_2:52368567-52368586 None:intergenic 25.0%
! ATATTTACTCATGAAAAGCA+GGG - chr4_2:52369228-52369247 None:intergenic 25.0%
! ATGAGTAAATATGTTTGTGT+AGG + chr4_2:52369236-52369255 Msa0606230:intron 25.0%
! TAAATATGTTTGTGTAGGAT+AGG + chr4_2:52369241-52369260 Msa0606230:intron 25.0%
! AAATATGTTTGTGTAGGATA+GGG + chr4_2:52369242-52369261 Msa0606230:intron 25.0%
! ATTACTGTTATCCCATAAAA+GGG - chr4_2:52369402-52369421 None:intergenic 25.0%
! AATTACTGTTATCCCATAAA+AGG - chr4_2:52369403-52369422 None:intergenic 25.0%
! GTAATTCACTAATGCATAAA+TGG + chr4_2:52369417-52369436 Msa0606230:intron 25.0%
!! CACACTGAATTAATTTCTTT+TGG + chr4_2:52369813-52369832 Msa0606230:intron 25.0%
! CTACTTATAAACATATGTTC+AGG - chr4_2:52369958-52369977 None:intergenic 25.0%
! CTGAACATATGTTTATAAGT+AGG + chr4_2:52369956-52369975 Msa0606230:intron 25.0%
! GAACATATGTTTATAAGTAG+GGG + chr4_2:52369958-52369977 Msa0606230:intron 25.0%
! TGAAGATATGTTTATTAGTG+GGG - chr4_2:52370054-52370073 None:intergenic 25.0%
! CTGAAGATATGTTTATTAGT+GGG - chr4_2:52370055-52370074 None:intergenic 25.0%
!! TATATACTGTTTTACACATC+TGG + chr4_2:52370153-52370172 Msa0606230:intron 25.0%
! GCTAGTATTATAAATGGAAT+TGG + chr4_2:52370459-52370478 Msa0606230:CDS 25.0%
!!! AGAAAGTTTTGATGTTTAGA+TGG + chr4_2:52371032-52371051 Msa0606230:intron 25.0%
!! TGTATATTTTGCTACATCAA+TGG + chr4_2:52371071-52371090 Msa0606230:CDS 25.0%
!! GTATATTTTGCTACATCAAT+GGG + chr4_2:52371072-52371091 Msa0606230:CDS 25.0%
! AGTTGAATTACACATTATGT+TGG + chr4_2:52371424-52371443 Msa0606230:intron 25.0%
! ATATTATATATTGACAGGCT+AGG + chr4_2:52371556-52371575 Msa0606230:intron 25.0%
!! GAGGTTTTTATGAAATAAAC+AGG + chr4_2:52371787-52371806 Msa0606230:intron 25.0%
! TCATGTTAGATTAGAATGTT+TGG + chr4_2:52371948-52371967 Msa0606230:intron 25.0%
! AGAATATTTGAGTGGTTATT+TGG - chr4_2:52372341-52372360 None:intergenic 25.0%
! AATAACCACTCAAATATTCT+AGG + chr4_2:52372341-52372360 Msa0606230:intron 25.0%
! GTTTGTACAAGGAATAAATA+AGG - chr4_2:52372390-52372409 None:intergenic 25.0%
!!! TATTGGTAACAAATTTTGCT+TGG + chr4_2:52372804-52372823 Msa0606230:intron 25.0%
!! TAGCACTGTATATGAATTTT+AGG - chr4_2:52372966-52372985 None:intergenic 25.0%
!!! CTCCATTTTAATATTAGTTC+AGG + chr4_2:52373144-52373163 Msa0606230:three_prime_UTR 25.0%
! ATCAGAATGTGTTACAAAAT+AGG + chr4_2:52373214-52373233 Msa0606230:three_prime_UTR 25.0%
! TTGGTTAGTTGAATGGATAA+CGG - chr4_2:52367773-52367792 None:intergenic 30.0%
! TACTTGTTGAGCAGAATATA+TGG + chr4_2:52367947-52367966 Msa0606230:five_prime_UTR 30.0%
GAATATATGGATTCAGATGA+AGG + chr4_2:52367960-52367979 Msa0606230:five_prime_UTR 30.0%
! TATGTGATGTGTATGGATTT+TGG + chr4_2:52368157-52368176 Msa0606230:intron 30.0%
! TCTTTATTCCCCTTTTCTTA+TGG + chr4_2:52368296-52368315 Msa0606230:intron 30.0%
TGAACTTATAATTGTGTGAG+TGG + chr4_2:52368348-52368367 Msa0606230:intron 30.0%
!! AGTTTTACATTGGTTGTGAA+TGG + chr4_2:52368373-52368392 Msa0606230:intron 30.0%
!! GTTTTACATTGGTTGTGAAT+GGG + chr4_2:52368374-52368393 Msa0606230:intron 30.0%
!! TTTTACATTGGTTGTGAATG+GGG + chr4_2:52368375-52368394 Msa0606230:intron 30.0%
TATATCCATTATCCGCTATA+AGG - chr4_2:52368543-52368562 None:intergenic 30.0%
ACCGATAACAGATAAGTTAA+TGG + chr4_2:52368563-52368582 Msa0606230:intron 30.0%
TGTATTTGTAAACTGAGAGT+TGG + chr4_2:52368678-52368697 Msa0606230:intron 30.0%
CTCATATGTCTAATGTTCTA+AGG + chr4_2:52368771-52368790 Msa0606230:intron 30.0%
!! TAATGTTCTAAGGTGTTTAG+TGG + chr4_2:52368781-52368800 Msa0606230:intron 30.0%
GTTGTCCCTATTATTCTTTA+CGG + chr4_2:52368826-52368845 Msa0606230:intron 30.0%
AGAGTCCGTAAAGAATAATA+GGG - chr4_2:52368834-52368853 None:intergenic 30.0%
TCTTGCATCAAAAGTCTTTA+TGG + chr4_2:52368905-52368924 Msa0606230:intron 30.0%
ATCAAAAGTCTTTATGGTAG+TGG + chr4_2:52368911-52368930 Msa0606230:intron 30.0%
CATATTTACTCATGAAAAGC+AGG - chr4_2:52369229-52369248 None:intergenic 30.0%
!! ATATCTGTCTTGCTTTTCAT+TGG + chr4_2:52369282-52369301 Msa0606230:five_prime_UTR 30.0%
!!! CTTTTCATTGGATTAGTATG+TGG + chr4_2:52369294-52369313 Msa0606230:five_prime_UTR 30.0%
CTACTGTTCACAATGTTATT+TGG + chr4_2:52369327-52369346 Msa0606230:five_prime_UTR 30.0%
TTGAACAATTCATCAGTCAT+GGG - chr4_2:52369455-52369474 None:intergenic 30.0%
ATTGAACAATTCATCAGTCA+TGG - chr4_2:52369456-52369475 None:intergenic 30.0%
GGTACTAAATGTACATTTGT+CGG - chr4_2:52369505-52369524 None:intergenic 30.0%
GTAATCAGAAGAAAAATACC+TGG - chr4_2:52369546-52369565 None:intergenic 30.0%
! AAAGCAGAATCTGATTTGAA+AGG - chr4_2:52369726-52369745 None:intergenic 30.0%
! TCTTACAAGCCAATTTTGTA+AGG + chr4_2:52369990-52370009 Msa0606230:intron 30.0%
CAAACTCATCCTTACAAAAT+TGG - chr4_2:52370002-52370021 None:intergenic 30.0%
! CAATTTTGTAAGGATGAGTT+TGG + chr4_2:52370000-52370019 Msa0606230:intron 30.0%
GAAGATATGTTTATTAGTGG+GGG - chr4_2:52370053-52370072 None:intergenic 30.0%
CCTGAAGATATGTTTATTAG+TGG - chr4_2:52370056-52370075 None:intergenic 30.0%
CCACTAATAAACATATCTTC+AGG + chr4_2:52370053-52370072 Msa0606230:intron 30.0%
TACACATCTGGCTAAAATTT+CGG + chr4_2:52370165-52370184 Msa0606230:intron 30.0%
!! CTTCACATAAGCTATTTTCA+AGG - chr4_2:52370291-52370310 None:intergenic 30.0%
GCTGTTGCTAGTATTATAAA+TGG + chr4_2:52370453-52370472 Msa0606230:CDS 30.0%
ATCATTCTGTGCAGATATTT+AGG + chr4_2:52370486-52370505 Msa0606230:CDS 30.0%
!! ATTTGTCTCATTGGTGTTAA+AGG + chr4_2:52370944-52370963 Msa0606230:CDS 30.0%
AGGAATAGTTGCAAAATACA+AGG - chr4_2:52371138-52371157 None:intergenic 30.0%
GTTATCAATTATCGTGAGTT+TGG - chr4_2:52371190-52371209 None:intergenic 30.0%
GATAACTCAACTCTTATGTT+AGG + chr4_2:52371204-52371223 Msa0606230:intron 30.0%
CATAAATGATTGAGCAGTTT+GGG - chr4_2:52371278-52371297 None:intergenic 30.0%
CAACCTCATATATACAGTAT+CGG + chr4_2:52371378-52371397 Msa0606230:intron 30.0%
AAACCGATACTGTATATATG+AGG - chr4_2:52371384-52371403 None:intergenic 30.0%
TGAATTACACATTATGTTGG+TGG + chr4_2:52371427-52371446 Msa0606230:intron 30.0%
!!! TCTTCTTTCTTTTTGGTTTG+AGG + chr4_2:52371451-52371470 Msa0606230:intron 30.0%
!!! CTTCTTTCTTTTTGGTTTGA+GGG + chr4_2:52371452-52371471 Msa0606230:intron 30.0%
!!! TTCTTTCTTTTTGGTTTGAG+GGG + chr4_2:52371453-52371472 Msa0606230:intron 30.0%
GAACATTGTAAGGAAAACAT+CGG - chr4_2:52371496-52371515 None:intergenic 30.0%
AATGTATGGAGAACATTGTA+AGG - chr4_2:52371506-52371525 None:intergenic 30.0%
!! CTAAGGTCTCTTTTAACTAT+TGG + chr4_2:52371585-52371604 Msa0606230:CDS 30.0%
TTAACTATTGGAGCTATACT+TGG + chr4_2:52371597-52371616 Msa0606230:CDS 30.0%
TAACTATTGGAGCTATACTT+GGG + chr4_2:52371598-52371617 Msa0606230:CDS 30.0%
AAAAACCTCTGTATTTCCAT+TGG - chr4_2:52371776-52371795 None:intergenic 30.0%
GAAATTAAGGCTTATGTTAG+TGG + chr4_2:52371813-52371832 Msa0606230:intron 30.0%
TAAAGATATAGGTCAGATAC+TGG - chr4_2:52372029-52372048 None:intergenic 30.0%
CGTTTGTATGCTAAAGATAT+AGG - chr4_2:52372040-52372059 None:intergenic 30.0%
TGCATTAAACTGATAGAAAC+TGG + chr4_2:52372131-52372150 Msa0606230:intron 30.0%
! ATTGAACAATTTCTGGAGAA+AGG + chr4_2:52372192-52372211 Msa0606230:intron 30.0%
TGTATGTTCCATCTATGATT+GGG - chr4_2:52372220-52372239 None:intergenic 30.0%
TTGTATGTTCCATCTATGAT+TGG - chr4_2:52372221-52372240 None:intergenic 30.0%
ATTTGAGTGGTTATTTGGAA+AGG - chr4_2:52372336-52372355 None:intergenic 30.0%
! GTGTATTTTCTGTTTGTACA+AGG - chr4_2:52372401-52372420 None:intergenic 30.0%
GTCAAAATAGTATGGTTTAC+TGG - chr4_2:52372592-52372611 None:intergenic 30.0%
TTTATAAGTTTGTCAACGAG+TGG + chr4_2:52372755-52372774 Msa0606230:CDS 30.0%
AGGGAAATATTGTGTCTATT+AGG + chr4_2:52373012-52373031 Msa0606230:intron 30.0%
AATATTGTGTCTATTAGGCT+CGG + chr4_2:52373017-52373036 Msa0606230:intron 30.0%
TCTGAGTATAAAATACCACT+GGG - chr4_2:52373073-52373092 None:intergenic 30.0%
TTCTGAGTATAAAATACCAC+TGG - chr4_2:52373074-52373093 None:intergenic 30.0%
! AGTTGAAGACTGTATAGTTT+TGG + chr4_2:52373119-52373138 Msa0606230:exon 30.0%
GATTGAAATGCAGTGAGAAT+TGG - chr4_2:52367660-52367679 None:intergenic 35.0%
TTAAATGGGAAATGAGGTTG+CGG - chr4_2:52367705-52367724 None:intergenic 35.0%
!! TAATGCGTTGGTTAGTTGAA+TGG - chr4_2:52367780-52367799 None:intergenic 35.0%
!! AAACTTCGCTGATTTGTTCT+TGG - chr4_2:52367888-52367907 None:intergenic 35.0%
AGCACAAGAAGAAGAAATGA+AGG + chr4_2:52367921-52367940 Msa0606230:five_prime_UTR 35.0%
GTATCAATGAGACTCATCAA+TGG - chr4_2:52368033-52368052 None:intergenic 35.0%
!! TCAATTGAACTTGCTGCTTT+AGG + chr4_2:52368075-52368094 Msa0606230:five_prime_UTR 35.0%
!!! ATTTTGGTTTCTACATGAGC+AGG + chr4_2:52368173-52368192 Msa0606230:intron 35.0%
TAATCGCAAAAAACAGTAGC+AGG - chr4_2:52368200-52368219 None:intergenic 35.0%
!!! GTGAGTGGTTAGTTTTACAT+TGG + chr4_2:52368363-52368382 Msa0606230:intron 35.0%
TACTCATTATCAGCCAATGT+GGG - chr4_2:52368726-52368745 None:intergenic 35.0%
TTACTCATTATCAGCCAATG+TGG - chr4_2:52368727-52368746 None:intergenic 35.0%
GAGAGTCCGTAAAGAATAAT+AGG - chr4_2:52368835-52368854 None:intergenic 35.0%
ATTCTCCCATCAAGTTAACA+CGG - chr4_2:52368876-52368895 None:intergenic 35.0%
! ACGGAAAACCATCAAACTTT+TGG + chr4_2:52369134-52369153 Msa0606230:intron 35.0%
!!! ATGCCTTTTTCAGCTTTTAC+TGG + chr4_2:52369478-52369497 Msa0606230:intron 35.0%
TGGACATAAATATTAGCTGC+AGG - chr4_2:52369526-52369545 None:intergenic 35.0%
TGCAGCTAATATTTATGTCC+AGG + chr4_2:52369525-52369544 Msa0606230:exon 35.0%
AGTGTGACTAAATCAAGTAG+AGG - chr4_2:52369799-52369818 None:intergenic 35.0%
!!! TTCTTTTGGTGTTAGATTCG+AGG + chr4_2:52369827-52369846 Msa0606230:intron 35.0%
ACCAATCCAACAAGTAAAGA+AGG - chr4_2:52369863-52369882 None:intergenic 35.0%
CATATGTTTATAAGTAGGGG+AGG + chr4_2:52369961-52369980 Msa0606230:intron 35.0%
!! CAAAATTGGCTTGTAAGACA+AGG - chr4_2:52369988-52370007 None:intergenic 35.0%
GGTCATATCTCATCCAATAT+AGG + chr4_2:52370074-52370093 Msa0606230:intron 35.0%
GCAGATGAGATATCATAACA+CGG - chr4_2:52370191-52370210 None:intergenic 35.0%
TCTTGGTATGAAAGACTCTT+GGG + chr4_2:52370413-52370432 Msa0606230:CDS 35.0%
TGTGCAGATATTTAGGCTAT+GGG + chr4_2:52370493-52370512 Msa0606230:CDS 35.0%
AACAACCTGAAAACAAGAAG+GGG - chr4_2:52370814-52370833 None:intergenic 35.0%
CAACAACCTGAAAACAAGAA+GGG - chr4_2:52370815-52370834 None:intergenic 35.0%
AACACCAATGAGACAAATAC+AGG - chr4_2:52370942-52370961 None:intergenic 35.0%
TCAACTCTTATGTTAGGTCA+TGG + chr4_2:52371210-52371229 Msa0606230:intron 35.0%
GCATAAATGATTGAGCAGTT+TGG - chr4_2:52371279-52371298 None:intergenic 35.0%
!! TTTATGCCTGAGTTGATGTA+CGG + chr4_2:52371292-52371311 Msa0606230:CDS 35.0%
! AGTTGATGTACGGAGTAAAT+CGG + chr4_2:52371302-52371321 Msa0606230:CDS 35.0%
AGTAAATCGGAGTTTGGTAA+AGG + chr4_2:52371315-52371334 Msa0606230:CDS 35.0%
TACTGTATATATGAGGTTGG+AGG - chr4_2:52371377-52371396 None:intergenic 35.0%
CGATACTGTATATATGAGGT+TGG - chr4_2:52371380-52371399 None:intergenic 35.0%
!! TGGTGGATCTTCTTTCTTTT+TGG + chr4_2:52371444-52371463 Msa0606230:intron 35.0%
TAGTTGGAACATTTGTTCCT+TGG + chr4_2:52371634-52371653 Msa0606230:CDS 35.0%
TGATCAGGTGTAAATGTGTA+GGG - chr4_2:52371666-52371685 None:intergenic 35.0%
AAAATCAAAAACTGACCTCC+TGG - chr4_2:52371698-52371717 None:intergenic 35.0%
GATAACCAATGGAAATACAG+AGG + chr4_2:52371768-52371787 Msa0606230:intron 35.0%
ATTAAGGCTTATGTTAGTGG+TGG + chr4_2:52371816-52371835 Msa0606230:intron 35.0%
GAAACGTTAAACAGAACAGA+TGG + chr4_2:52372264-52372283 Msa0606230:intron 35.0%
AGAACAGATGGACAAAAACA+TGG + chr4_2:52372276-52372295 Msa0606230:intron 35.0%
TTGTGTATATTTGCTCTTGC+AGG + chr4_2:52372715-52372734 Msa0606230:intron 35.0%
TTCAAGTGCTCTTGTACTAT+TGG + chr4_2:52372787-52372806 Msa0606230:CDS 35.0%
TTTCCCTTGTTGGATTTCAA+TGG + chr4_2:52372928-52372947 Msa0606230:CDS 35.0%
TTCCCTTGTTGGATTTCAAT+GGG + chr4_2:52372929-52372948 Msa0606230:CDS 35.0%
TACCCATTGAAATCCAACAA+GGG - chr4_2:52372934-52372953 None:intergenic 35.0%
TTACCCATTGAAATCCAACA+AGG - chr4_2:52372935-52372954 None:intergenic 35.0%
!! CTATTAGGCTCGGTTTTTAA+TGG + chr4_2:52373027-52373046 Msa0606230:intron 35.0%
TATACTCAGAAGATGTAAGC+CGG + chr4_2:52373083-52373102 Msa0606230:CDS 35.0%
AGGTAAGTGGCGGTTTAAAT+GGG - chr4_2:52367719-52367738 None:intergenic 40.0%
! GTTAGTTGAATGGATAACGG+TGG - chr4_2:52367770-52367789 None:intergenic 40.0%
TCGAGGATGTAATAATGCGT+TGG - chr4_2:52367792-52367811 None:intergenic 40.0%
!!! TCTTGATTTTGAAGTACGCG+AGG - chr4_2:52367844-52367863 None:intergenic 40.0%
!! GCTGATTTGTTCTTGGTGTT+CGG - chr4_2:52367881-52367900 None:intergenic 40.0%
TTGTTTACTGGACCTGCTAT+TGG + chr4_2:52367991-52368010 Msa0606230:five_prime_UTR 40.0%
CATAACCAAAGACCAATAGC+AGG - chr4_2:52368006-52368025 None:intergenic 40.0%
!! GCTATTGGTCTTTGGTTATG+TGG + chr4_2:52368006-52368025 Msa0606230:five_prime_UTR 40.0%
CTCATTGATACTGCTGTTGT+TGG + chr4_2:52368042-52368061 Msa0606230:five_prime_UTR 40.0%
TTGGTGTAGATGTGCAAGTT+TGG + chr4_2:52368448-52368467 Msa0606230:intron 40.0%
TGGTGTAGATGTGCAAGTTT+GGG + chr4_2:52368449-52368468 Msa0606230:intron 40.0%
GCTGATAAGCTACCTTATAG+CGG + chr4_2:52368528-52368547 Msa0606230:intron 40.0%
!! AGCTACCTTATAGCGGATAA+TGG + chr4_2:52368535-52368554 Msa0606230:intron 40.0%
TTGAGTGTTTAGTCCCACAT+TGG + chr4_2:52368710-52368729 Msa0606230:intron 40.0%
CTCTCCAACAAGTGGTATTT+CGG + chr4_2:52368850-52368869 Msa0606230:intron 40.0%
AACTTGATGGGAGAATGAGA+TGG + chr4_2:52368880-52368899 Msa0606230:intron 40.0%
ACTTGATGGGAGAATGAGAT+GGG + chr4_2:52368881-52368900 Msa0606230:intron 40.0%
!! GTCTTTATGGTAGTGGAGTA+AGG + chr4_2:52368918-52368937 Msa0606230:intron 40.0%
!! TTTATGGTAGTGGAGTAAGG+TGG + chr4_2:52368921-52368940 Msa0606230:intron 40.0%
ACACCCAACAATGACAAAAG+CGG + chr4_2:52369047-52369066 Msa0606230:intron 40.0%
TATGTTTGTGTAGGATAGGG+AGG + chr4_2:52369245-52369264 Msa0606230:intron 40.0%
!! CATTGGATTAGTATGTGGCT+TGG + chr4_2:52369299-52369318 Msa0606230:five_prime_UTR 40.0%
ACAATTCATCAGTCATGGGT+AGG - chr4_2:52369451-52369470 None:intergenic 40.0%
GGTCCAGTAAAAGCTGAAAA+AGG - chr4_2:52369484-52369503 None:intergenic 40.0%
!! TTGGTGTTAGATTCGAGGAT+TGG + chr4_2:52369832-52369851 Msa0606230:intron 40.0%
! GCCTTCTTTACTTGTTGGAT+TGG + chr4_2:52369859-52369878 Msa0606230:intron 40.0%
CAAGACTGCGTGATAAAATG+TGG - chr4_2:52370398-52370417 None:intergenic 40.0%
! CACATTTTATCACGCAGTCT+TGG + chr4_2:52370396-52370415 Msa0606230:CDS 40.0%
GTCTTGGTATGAAAGACTCT+TGG + chr4_2:52370412-52370431 Msa0606230:CDS 40.0%
CTTGGTATGAAAGACTCTTG+GGG + chr4_2:52370414-52370433 Msa0606230:CDS 40.0%
CTGTGCAGATATTTAGGCTA+TGG + chr4_2:52370492-52370511 Msa0606230:CDS 40.0%
TATTTAGGCTATGGGATTGC+TGG + chr4_2:52370501-52370520 Msa0606230:CDS 40.0%
ATTTAGGCTATGGGATTGCT+GGG + chr4_2:52370502-52370521 Msa0606230:CDS 40.0%
ACAACCTGAAAACAAGAAGG+GGG - chr4_2:52370813-52370832 None:intergenic 40.0%
GCAACAACCTGAAAACAAGA+AGG - chr4_2:52370816-52370835 None:intergenic 40.0%
AGCCAAACTCTAATCGAGAA+GGG + chr4_2:52370849-52370868 Msa0606230:CDS 40.0%
ATCCCTTCTCGATTAGAGTT+TGG - chr4_2:52370854-52370873 None:intergenic 40.0%
TCTAATCGAGAAGGGATACA+AGG + chr4_2:52370857-52370876 Msa0606230:CDS 40.0%
! TTTTCCTTCTCCATTCCTTC+AGG + chr4_2:52370882-52370901 Msa0606230:CDS 40.0%
TTTCCTTCTCCATTCCTTCA+GGG + chr4_2:52370883-52370902 Msa0606230:CDS 40.0%
AAATTCCTTCCCTGAAGGAA+TGG - chr4_2:52370895-52370914 None:intergenic 40.0%
TGCTCCTGTATTTGTCTCAT+TGG + chr4_2:52370935-52370954 Msa0606230:CDS 40.0%
ATCAATGGGTACACATGCAA+CGG + chr4_2:52371086-52371105 Msa0606230:CDS 40.0%
AATGTGCAGATAGACAGCAA+AGG - chr4_2:52371158-52371177 None:intergenic 40.0%
TTTACGTTGTGCACAGTATG+TGG + chr4_2:52371241-52371260 Msa0606230:CDS 40.0%
TTTACTCCGTACATCAACTC+AGG - chr4_2:52371301-52371320 None:intergenic 40.0%
AATCGGAGTTTGGTAAAGGT+TGG + chr4_2:52371319-52371338 Msa0606230:intron 40.0%
!!! CTATACTTGGGCTGCTTTTT+GGG + chr4_2:52371610-52371629 Msa0606230:CDS 40.0%
AATGTGTAGGGGAATAACCA+AGG - chr4_2:52371654-52371673 None:intergenic 40.0%
GATCAGGTGTAAATGTGTAG+GGG - chr4_2:52371665-52371684 None:intergenic 40.0%
CTGATCAGGTGTAAATGTGT+AGG - chr4_2:52371667-52371686 None:intergenic 40.0%
CACATTTACACCTGATCAGA+TGG + chr4_2:52371668-52371687 Msa0606230:CDS 40.0%
ACCACTAGCGCTAAAAAGTA+CGG - chr4_2:52371885-52371904 None:intergenic 40.0%
AAGACCAAGGCTCATGTTTA+AGG + chr4_2:52372067-52372086 Msa0606230:intron 40.0%
AAGTCCTTAAACATGAGCCT+TGG - chr4_2:52372074-52372093 None:intergenic 40.0%
GAAAGGTTCCCAATCATAGA+TGG + chr4_2:52372209-52372228 Msa0606230:intron 40.0%
CAAAAACATGGTTCCTACCA+AGG + chr4_2:52372288-52372307 Msa0606230:intron 40.0%
GTGGTTATTTGGAAAGGAAG+TGG - chr4_2:52372330-52372349 None:intergenic 40.0%
GGGATCCTAGAATATTTGAG+TGG - chr4_2:52372349-52372368 None:intergenic 40.0%
AACTGACACTCGCAATTTCT+GGG - chr4_2:52372508-52372527 None:intergenic 40.0%
AAACTGACACTCGCAATTTC+TGG - chr4_2:52372509-52372528 None:intergenic 40.0%
! ACAAATTTTGCTTGGTCTGC+TGG + chr4_2:52372812-52372831 Msa0606230:intron 40.0%
CAGATCTTACGAAGCAGATA+TGG + chr4_2:52372888-52372907 Msa0606230:intron 40.0%
GGATTTCAATGGGTAAGACT+CGG + chr4_2:52372939-52372958 Msa0606230:intron 40.0%
AAATACCACTGGGAGATAGA+AGG - chr4_2:52373063-52373082 None:intergenic 40.0%
AAATGAGGTTGCGGTTAACG+AGG - chr4_2:52367696-52367715 None:intergenic 45.0%
GGCGGTTTAAATGGGAAATG+AGG - chr4_2:52367711-52367730 None:intergenic 45.0%
GAGGTAAGTGGCGGTTTAAA+TGG - chr4_2:52367720-52367739 None:intergenic 45.0%
GAAGGGAATGAAGAGGTAAG+TGG - chr4_2:52367732-52367751 None:intergenic 45.0%
GTGTTGAGAAGGGAATGAAG+AGG - chr4_2:52367739-52367758 None:intergenic 45.0%
! AGTTGAATGGATAACGGTGG+TGG - chr4_2:52367767-52367786 None:intergenic 45.0%
GCATTATTACATCCTCGAGC+CGG + chr4_2:52367794-52367813 Msa0606230:five_prime_UTR 45.0%
! TTTGAAGTACGCGAGGTGTT+AGG - chr4_2:52367837-52367856 None:intergenic 45.0%
GATACTGCTGTTGTTGGTCA+AGG + chr4_2:52368048-52368067 Msa0606230:five_prime_UTR 45.0%
GTCGATTGCTACGTCGAATA+TGG + chr4_2:52368244-52368263 Msa0606230:five_prime_UTR 45.0%
! TGCTACTGCACTTGCTAAAC+AGG + chr4_2:52368268-52368287 Msa0606230:five_prime_UTR 45.0%
TTTACGGACTCTCCAACAAG+TGG + chr4_2:52368842-52368861 Msa0606230:intron 45.0%
! TTTCGGCCGTGTTAACTTGA+TGG + chr4_2:52368867-52368886 Msa0606230:intron 45.0%
! TTCGGCCGTGTTAACTTGAT+GGG + chr4_2:52368868-52368887 Msa0606230:intron 45.0%
TGATGTGCGAGACTCATAAC+TGG + chr4_2:52368981-52369000 Msa0606230:intron 45.0%
!! CCTCCGCTTTTGTCATTGTT+GGG - chr4_2:52369053-52369072 None:intergenic 45.0%
!! TCCTCCGCTTTTGTCATTGT+TGG - chr4_2:52369054-52369073 None:intergenic 45.0%
CCCATAAAAGGGACACAACT+GGG - chr4_2:52369391-52369410 None:intergenic 45.0%
! CCCAGTTGTGTCCCTTTTAT+GGG + chr4_2:52369388-52369407 Msa0606230:intron 45.0%
TCCCATAAAAGGGACACAAC+TGG - chr4_2:52369392-52369411 None:intergenic 45.0%
! GTTAGATTCGAGGATTGGCA+TGG + chr4_2:52369837-52369856 Msa0606230:intron 45.0%
GCATGGCCTTCTTTACTTGT+TGG + chr4_2:52369854-52369873 Msa0606230:intron 45.0%
AGTTCCACCTTGGATGAGTA+TGG + chr4_2:52369932-52369951 Msa0606230:intron 45.0%
GAAATCCTCACCTTACAAGC+CGG - chr4_2:52370031-52370050 None:intergenic 45.0%
CACGGTTGAGAGTCCTATAT+TGG - chr4_2:52370090-52370109 None:intergenic 45.0%
TTTAGGCTATGGGATTGCTG+GGG + chr4_2:52370503-52370522 Msa0606230:CDS 45.0%
!!! TACACCCCCTTCTTGTTTTC+AGG + chr4_2:52370806-52370825 Msa0606230:intron 45.0%
GAGCCAAACTCTAATCGAGA+AGG + chr4_2:52370848-52370867 Msa0606230:CDS 45.0%
GACAGAAATTCCTTCCCTGA+AGG - chr4_2:52370900-52370919 None:intergenic 45.0%
GATTGAGCAGTTTGGGAGAT+AGG - chr4_2:52371271-52371290 None:intergenic 45.0%
GTACGGAGTAAATCGGAGTT+TGG + chr4_2:52371309-52371328 Msa0606230:CDS 45.0%
!!! GCTATACTTGGGCTGCTTTT+TGG + chr4_2:52371609-52371628 Msa0606230:CDS 45.0%
AATGTAGACAAGGGCGATAG+TGG - chr4_2:52371738-52371757 None:intergenic 45.0%
TATCGCCCTTGTCTACATTG+CGG + chr4_2:52371739-52371758 Msa0606230:intron 45.0%
GTGTGATCATGCAGATGCAT+AGG + chr4_2:52371850-52371869 Msa0606230:intron 45.0%
!! TCCGTACTTTTTAGCGCTAG+TGG + chr4_2:52371881-52371900 Msa0606230:CDS 45.0%
CAAACGAGTGTCAAAGACCA+AGG + chr4_2:52372054-52372073 Msa0606230:intron 45.0%
AAGTCTCTCGAATCCTTGGT+AGG - chr4_2:52372304-52372323 None:intergenic 45.0%
TACCAAGGATTCGAGAGACT+TGG + chr4_2:52372303-52372322 Msa0606230:intron 45.0%
GGATAGACAAGACGTAGTCA+GGG - chr4_2:52372369-52372388 None:intergenic 45.0%
AGGATAGACAAGACGTAGTC+AGG - chr4_2:52372370-52372389 None:intergenic 45.0%
GTATATTTGCTCTTGCAGGC+TGG + chr4_2:52372719-52372738 Msa0606230:intron 45.0%
AGAAGATGTAAGCCGGTATG+CGG + chr4_2:52373090-52373109 Msa0606230:CDS 45.0%
! TCAACTTTTGCTCCGCATAC+CGG - chr4_2:52373105-52373124 None:intergenic 45.0%
GGGAATGAAGAGGTAAGTGG+CGG - chr4_2:52367729-52367748 None:intergenic 50.0%
! TGAATGGATAACGGTGGTGG+TGG - chr4_2:52367764-52367783 None:intergenic 50.0%
!! CTGGACCTGCTATTGGTCTT+TGG + chr4_2:52367998-52368017 Msa0606230:five_prime_UTR 50.0%
ACGGCCGAAATACCACTTGT+TGG - chr4_2:52368857-52368876 None:intergenic 50.0%
AGTAAGGTGGCGTGCTTTGT+TGG + chr4_2:52368934-52368953 Msa0606230:intron 50.0%
CCCAACAATGACAAAAGCGG+AGG + chr4_2:52369050-52369069 Msa0606230:intron 50.0%
! GCCCAGTTGTGTCCCTTTTA+TGG + chr4_2:52369387-52369406 Msa0606230:intron 50.0%
! GATTGGTTGCTCAGAGTGCA+AGG + chr4_2:52369876-52369895 Msa0606230:intron 50.0%
GTGTGTTGAGAGTTCCACCT+TGG + chr4_2:52369922-52369941 Msa0606230:intron 50.0%
GTTCAGGCCATACTCATCCA+AGG - chr4_2:52369942-52369961 None:intergenic 50.0%
AAGGATGAGTTTGGCCCAAC+CGG + chr4_2:52370009-52370028 Msa0606230:intron 50.0%
AGCAACAGCCAAAGCCTTCA+GGG - chr4_2:52370442-52370461 None:intergenic 50.0%
TAGCAACAGCCAAAGCCTTC+AGG - chr4_2:52370443-52370462 None:intergenic 50.0%
CTTCCCTGAAGGAATGGAGA+AGG - chr4_2:52370889-52370908 None:intergenic 50.0%
CTTCTCCATTCCTTCAGGGA+AGG + chr4_2:52370887-52370906 Msa0606230:CDS 50.0%
!!! GGGCTGCTTTTTGGGATAGT+TGG + chr4_2:52371618-52371637 Msa0606230:CDS 50.0%
ACCTGATCAGATGGTCATCC+AGG + chr4_2:52371677-52371696 Msa0606230:CDS 50.0%
TCCTGGATGACCATCTGATC+AGG - chr4_2:52371681-52371700 None:intergenic 50.0%
TGATCAGATGGTCATCCAGG+AGG + chr4_2:52371680-52371699 Msa0606230:CDS 50.0%
ATCGCCCTTGTCTACATTGC+GGG + chr4_2:52371740-52371759 Msa0606230:intron 50.0%
GTGGTGACACCTGCAACTAT+CGG + chr4_2:52371900-52371919 Msa0606230:CDS 50.0%
ATACCAGCAATGTTCCCTCC+AGG - chr4_2:52371926-52371945 None:intergenic 50.0%
GTCCAAGTCTCTCGAATCCT+TGG - chr4_2:52372308-52372327 None:intergenic 50.0%
ATTTGCTCTTGCAGGCTGGA+CGG + chr4_2:52372723-52372742 Msa0606230:intron 50.0%
CGAAGCAGATATGGTCTGCA+AGG + chr4_2:52372897-52372916 Msa0606230:CDS 50.0%
GATATGGTCTGCAAGGCTGT+TGG + chr4_2:52372904-52372923 Msa0606230:CDS 50.0%
!!! GGCTGTTGGTTTTCCCTTGT+TGG + chr4_2:52372918-52372937 Msa0606230:CDS 50.0%
!! GGTGGTGGTGGTGTTGAGAA+GGG - chr4_2:52367749-52367768 None:intergenic 55.0%
!! TGGTGGTGGTGGTGTTGAGA+AGG - chr4_2:52367750-52367769 None:intergenic 55.0%
!! ATGGATAACGGTGGTGGTGG+TGG - chr4_2:52367761-52367780 None:intergenic 55.0%
! TACGCGAGGTGTTAGGAACC+CGG - chr4_2:52367830-52367849 None:intergenic 55.0%
! AGGTGGCGTGCTTTGTTGGA+TGG + chr4_2:52368938-52368957 Msa0606230:intron 55.0%
CAGGCCATACTCATCCAAGG+TGG - chr4_2:52369939-52369958 None:intergenic 55.0%
!! TTTGGCCCAACCGGCTTGTA+AGG + chr4_2:52370018-52370037 Msa0606230:intron 55.0%
CCTCACCTTACAAGCCGGTT+GGG - chr4_2:52370026-52370045 None:intergenic 55.0%
TCCTCACCTTACAAGCCGGT+TGG - chr4_2:52370027-52370046 None:intergenic 55.0%
GCAACAGCCAAAGCCTTCAG+GGG - chr4_2:52370441-52370460 None:intergenic 55.0%
GACAGGCTAGGTCGCTTCTA+AGG + chr4_2:52371568-52371587 Msa0606230:intron 55.0%
TCGCCCTTGTCTACATTGCG+GGG + chr4_2:52371741-52371760 Msa0606230:intron 55.0%
TGCCCCCGCAATGTAGACAA+GGG - chr4_2:52371747-52371766 None:intergenic 55.0%
TTTGCTCTTGCAGGCTGGAC+GGG + chr4_2:52372724-52372743 Msa0606230:intron 55.0%
! GGGAGATAGAAGGCGCAGAA+GGG - chr4_2:52373053-52373072 None:intergenic 55.0%
! TGGGAGATAGAAGGCGCAGA+AGG - chr4_2:52373054-52373073 None:intergenic 55.0%
GTGTTAGGAACCCGGAGCGA+CGG - chr4_2:52367822-52367841 None:intergenic 60.0%
! TTTGGTGCGACAACGCTCGC+AGG + chr4_2:52369345-52369364 Msa0606230:five_prime_UTR 60.0%
!! CCCAACCGGCTTGTAAGGTG+AGG + chr4_2:52370023-52370042 Msa0606230:intron 60.0%
AGACTCTTGGGGACCCCTGA+AGG + chr4_2:52370425-52370444 Msa0606230:CDS 60.0%
TTGGGGACCCCTGAAGGCTT+TGG + chr4_2:52370431-52370450 Msa0606230:CDS 60.0%
ATGGGATTGCTGGGGCTGCT+TGG + chr4_2:52370511-52370530 Msa0606230:CDS 60.0%
TGGGATTGCTGGGGCTGCTT+GGG + chr4_2:52370512-52370531 Msa0606230:CDS 60.0%
TGGGGCTGCTTGGGCTACAT+TGG + chr4_2:52370521-52370540 Msa0606230:CDS 60.0%
CGCCCTTGTCTACATTGCGG+GGG + chr4_2:52371742-52371761 Msa0606230:intron 60.0%
CTGCCCCCGCAATGTAGACA+AGG - chr4_2:52371748-52371767 None:intergenic 60.0%
CTTGTCTACATTGCGGGGGC+AGG + chr4_2:52371746-52371765 Msa0606230:intron 60.0%
TGCGGGGGCAGGATAACCAA+TGG + chr4_2:52371757-52371776 Msa0606230:intron 60.0%
GACACCTGCAACTATCGGCC+TGG + chr4_2:52371905-52371924 Msa0606230:CDS 60.0%
ACCTGCAACTATCGGCCTGG+AGG + chr4_2:52371908-52371927 Msa0606230:CDS 60.0%
CCTGCAACTATCGGCCTGGA+GGG + chr4_2:52371909-52371928 Msa0606230:CDS 60.0%
CTGCGCCTTCTATCTCCCAG+TGG + chr4_2:52373055-52373074 Msa0606230:CDS 60.0%
CCCTCCAGGCCGATAGTTGC+AGG - chr4_2:52371912-52371931 None:intergenic 65.0%
CGGCCTGGAGGGAACATTGC+TGG + chr4_2:52371920-52371939 Msa0606230:CDS 65.0%
TCGAGCCGGAACCGTCGCTC+CGG + chr4_2:52367808-52367827 Msa0606230:five_prime_UTR 70.0%
GGAACCCGGAGCGACGGTTC+CGG - chr4_2:52367816-52367835 None:intergenic 70.0%
! GGAGCGACGGTTCCGGCTCG+AGG - chr4_2:52367809-52367828 None:intergenic 75.0%
CGAGCCGGAACCGTCGCTCC+GGG + chr4_2:52367809-52367828 Msa0606230:five_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 52367613 52373252 52367613 ID=Msa0606230;Name=Msa0606230
chr4_2 mRNA 52367613 52373252 52367613 ID=Msa0606230-mRNA-1;Parent=Msa0606230;Name=Msa0606230-mRNA-1;_AED=0.14;_eAED=0.14;_QI=709|1|1|1|0.84|0.78|14|117|318
chr4_2 exon 52367613 52367693 52367613 ID=Msa0606230-mRNA-1:exon:12760;Parent=Msa0606230-mRNA-1
chr4_2 exon 52367721 52368096 52367721 ID=Msa0606230-mRNA-1:exon:12761;Parent=Msa0606230-mRNA-1
chr4_2 exon 52368195 52368289 52368195 ID=Msa0606230-mRNA-1:exon:12762;Parent=Msa0606230-mRNA-1
chr4_2 exon 52369258 52369366 52369258 ID=Msa0606230-mRNA-1:exon:12763;Parent=Msa0606230-mRNA-1
chr4_2 exon 52369491 52369546 52369491 ID=Msa0606230-mRNA-1:exon:12764;Parent=Msa0606230-mRNA-1
chr4_2 exon 52370362 52370551 52370362 ID=Msa0606230-mRNA-1:exon:12765;Parent=Msa0606230-mRNA-1
chr4_2 exon 52370828 52370965 52370828 ID=Msa0606230-mRNA-1:exon:12766;Parent=Msa0606230-mRNA-1
chr4_2 exon 52371051 52371119 52371051 ID=Msa0606230-mRNA-1:exon:12767;Parent=Msa0606230-mRNA-1
chr4_2 exon 52371226 52371336 52371226 ID=Msa0606230-mRNA-1:exon:12768;Parent=Msa0606230-mRNA-1
chr4_2 exon 52371573 52371701 52371573 ID=Msa0606230-mRNA-1:exon:12769;Parent=Msa0606230-mRNA-1
chr4_2 exon 52371864 52371941 52371864 ID=Msa0606230-mRNA-1:exon:12770;Parent=Msa0606230-mRNA-1
chr4_2 exon 52372737 52372808 52372737 ID=Msa0606230-mRNA-1:exon:12771;Parent=Msa0606230-mRNA-1
chr4_2 exon 52372891 52372950 52372891 ID=Msa0606230-mRNA-1:exon:12772;Parent=Msa0606230-mRNA-1
chr4_2 exon 52373034 52373252 52373034 ID=Msa0606230-mRNA-1:exon:12773;Parent=Msa0606230-mRNA-1
chr4_2 five_prime_UTR 52367613 52367693 52367613 ID=Msa0606230-mRNA-1:five_prime_utr;Parent=Msa0606230-mRNA-1
chr4_2 five_prime_UTR 52367721 52368096 52367721 ID=Msa0606230-mRNA-1:five_prime_utr;Parent=Msa0606230-mRNA-1
chr4_2 five_prime_UTR 52368195 52368289 52368195 ID=Msa0606230-mRNA-1:five_prime_utr;Parent=Msa0606230-mRNA-1
chr4_2 five_prime_UTR 52369258 52369366 52369258 ID=Msa0606230-mRNA-1:five_prime_utr;Parent=Msa0606230-mRNA-1
chr4_2 five_prime_UTR 52369491 52369538 52369491 ID=Msa0606230-mRNA-1:five_prime_utr;Parent=Msa0606230-mRNA-1
chr4_2 CDS 52369539 52369546 52369539 ID=Msa0606230-mRNA-1:cds;Parent=Msa0606230-mRNA-1
chr4_2 CDS 52370362 52370551 52370362 ID=Msa0606230-mRNA-1:cds;Parent=Msa0606230-mRNA-1
chr4_2 CDS 52370828 52370965 52370828 ID=Msa0606230-mRNA-1:cds;Parent=Msa0606230-mRNA-1
chr4_2 CDS 52371051 52371119 52371051 ID=Msa0606230-mRNA-1:cds;Parent=Msa0606230-mRNA-1
chr4_2 CDS 52371226 52371336 52371226 ID=Msa0606230-mRNA-1:cds;Parent=Msa0606230-mRNA-1
chr4_2 CDS 52371573 52371701 52371573 ID=Msa0606230-mRNA-1:cds;Parent=Msa0606230-mRNA-1
chr4_2 CDS 52371864 52371941 52371864 ID=Msa0606230-mRNA-1:cds;Parent=Msa0606230-mRNA-1
chr4_2 CDS 52372737 52372808 52372737 ID=Msa0606230-mRNA-1:cds;Parent=Msa0606230-mRNA-1
chr4_2 CDS 52372891 52372950 52372891 ID=Msa0606230-mRNA-1:cds;Parent=Msa0606230-mRNA-1
chr4_2 CDS 52373034 52373135 52373034 ID=Msa0606230-mRNA-1:cds;Parent=Msa0606230-mRNA-1
chr4_2 three_prime_UTR 52373136 52373252 52373136 ID=Msa0606230-mRNA-1:three_prime_utr;Parent=Msa0606230-mRNA-1
Gene Sequence

>Msa0606230

ATGTCCAGATTGGGTTCTCATTTAATTCATATTCTTGTTATCCACATTTTATCACGCAGTCTTGGTATGAAAGACTCTTGGGGACCCCTGAAGGCTTTGGCTGTTGCTAGTATTATAAATGGAATTGGTGATATCATTCTGTGCAGATATTTAGGCTATGGGATTGCTGGGGCTGCTTGGGCTACATTGGCATCACAAGTTGTTGCTTCATATATGATGAGCCAAACTCTAATCGAGAAGGGATACAAGGCATTTTCCTTCTCCATTCCTTCAGGGAAGGAATTTCTGTCAATATTTAGTCTTGCTGCTCCTGTATTTGTCTCATTGGTGTTAAAGATGGCTTTCTACGCTCTACTTGTATATTTTGCTACATCAATGGGTACACATGCAACGGCTGCTCATCAAGTCATGGTTCAGATCTTTACGTTGTGCACAGTATGTGGTGAACCTATCTCCCAAACTGCTCAATCATTTATGCCTGAGTTGATGTACGGAGTAAATCGGAGTTTGGTAAAGGCTAGGTCGCTTCTAAGGTCTCTTTTAACTATTGGAGCTATACTTGGGCTGCTTTTTGGGATAGTTGGAACATTTGTTCCTTGGTTATTCCCCTACACATTTACACCTGATCAGATGGTCATCCAGGAGATGCATAGGATCTTGATTCCGTACTTTTTAGCGCTAGTGGTGACACCTGCAACTATCGGCCTGGAGGGAACATTGCTGGCTGGACGGGATCTAAGATTTATAAGTTTGTCAACGAGTGGATGCTTTTGTTCAAGTGCTCTTGTACTATTGATCTTACGAAGCAGATATGGTCTGCAAGGCTGTTGGTTTTCCCTTGTTGGATTTCAATGGGCTCGGTTTTTAATGGCCCTTCTGCGCCTTCTATCTCCCAGTGGTATTTTATACTCAGAAGATGTAAGCCGGTATGCGGAGCAAAAGTTGAAGACTGTATAG

Protein sequence

>Msa0606230

MSRLGSHLIHILVIHILSRSLGMKDSWGPLKALAVASIINGIGDIILCRYLGYGIAGAAWATLASQVVASYMMSQTLIEKGYKAFSFSIPSGKEFLSIFSLAAPVFVSLVLKMAFYALLVYFATSMGTHATAAHQVMVQIFTLCTVCGEPISQTAQSFMPELMYGVNRSLVKARSLLRSLLTIGAILGLLFGIVGTFVPWLFPYTFTPDQMVIQEMHRILIPYFLALVVTPATIGLEGTLLAGRDLRFISLSTSGCFCSSALVLLILRSRYGLQGCWFSLVGFQWARFLMALLRLLSPSGILYSEDVSRYAEQKLKTV*