AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0985980


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0985980 MtrunA17_Chr6g0464451 93.407 273 15 1 1 273 42 311 8.78e-179 494
Msa0985980 MtrunA17_Chr6g0464411 73.626 273 67 1 1 273 1 268 1.53e-149 419
Msa0985980 MtrunA17_Chr6g0464441 77.397 146 33 0 128 273 1 146 8.07e-80 237
Msa0985980 MtrunA17_Chr6g0464421 63.025 119 39 1 1 119 1 114 1.98e-48 157
Msa0985980 MtrunA17_Chr7g0241571 42.056 107 60 2 168 273 160 265 3.96e-19 84.3
Msa0985980 MtrunA17_Chr4g0031681 41.379 87 49 2 186 271 174 259 9.86e-14 70.5
Msa0985980 MtrunA17_Chr5g0440411 32.031 128 84 3 110 235 141 267 1.03e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0985980 AT5G16010.1 59.176 267 104 2 8 273 6 268 1.64e-115 333
Msa0985980 AT2G38050.1 32.710 107 71 1 168 273 156 262 3.39e-14 71.2
Msa0985980 AT3G55360.1 33.125 160 99 5 110 263 141 298 5.56e-13 68.2

Find 55 sgRNAs with CRISPR-Local

Find 302 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTATTTACGTTCCAGAATT+TGG 0.133911 6_4:+33392507 None:intergenic
ATAATAGCCTTAACATTCTT+AGG 0.263013 6_4:+33390439 None:intergenic
AGGTACTACTTTGTACCTTC+TGG 0.305156 6_4:-33390512 Msa0985980:CDS
ATTTAAACTATTCCAAATTC+TGG 0.314204 6_4:-33392519 Msa0985980:CDS
TACAAGAAACAATGTGATTC+CGG 0.321584 6_4:+33390723 None:intergenic
TTTAGATCTTTGGTTCTTCA+AGG 0.346488 6_4:-33392352 Msa0985980:CDS
CCACAAATATAGTGGTTCTA+TGG 0.348368 6_4:-33390860 Msa0985980:CDS
AGAAAATAACTTAGAGTTAT+GGG 0.350393 6_4:+33390820 None:intergenic
TATCTTCTATCCAAATTAAG+AGG 0.370538 6_4:-33390673 Msa0985980:CDS
AAATCAAACAAGCCACCTTT+AGG 0.388800 6_4:+33390625 None:intergenic
GAGAAAATAACTTAGAGTTA+TGG 0.393676 6_4:+33390819 None:intergenic
CTATTTGTCCACAAATATAG+TGG 0.398112 6_4:-33390868 Msa0985980:CDS
GGAATCACATTGTTTCTTGT+AGG 0.401990 6_4:-33390721 Msa0985980:CDS
AATAGATCGATTGGTGGTTC+TGG 0.413052 6_4:+33390751 None:intergenic
GGTACTACTTTGTACCTTCT+GGG 0.428658 6_4:-33390511 Msa0985980:CDS
ACAAGAAACAATGTGATTCC+GGG 0.450458 6_4:+33390724 None:intergenic
ATGAAATTGTCGAGTAAAAG+TGG 0.451319 6_4:-33392445 Msa0985980:CDS
GGTTCTTCAAGGTGCGGTTA+CGG 0.452069 6_4:-33392341 Msa0985980:CDS
TATTCGTTCTCTTTCGCCAT+AGG 0.454531 6_4:-33390532 Msa0985980:CDS
CTATCCAAATTAAGAGGAAA+AGG 0.458549 6_4:-33390667 Msa0985980:CDS
GCAGGTATCAACGAAGTTAG+AGG 0.460191 6_4:-33392547 Msa0985980:CDS
CCATAGAACCACTATATTTG+TGG 0.471338 6_4:+33390860 None:intergenic
TGATGTTATTCAAATATAAG+AGG 0.475685 6_4:-33390355 Msa0985980:three_prime_UTR
TTGTTTCTTGTAGGCATCAC+CGG 0.480456 6_4:-33390712 Msa0985980:CDS
AAAGATCTAAAACCATCATC+AGG 0.489846 6_4:+33392364 None:intergenic
GGTGATGAATAGTGATGGTG+GGG 0.492390 6_4:+33392606 None:intergenic
GGGGTGGGAATAGGAAGTTT+AGG 0.497094 6_4:+33392626 None:intergenic
ATACAATGTCTGAGAAATGA+AGG 0.509558 6_4:+33390552 None:intergenic
CAAATATAAGAGGTAGGTAG+TGG 0.521561 6_4:-33390345 Msa0985980:three_prime_UTR
AAAGAATACAAGATTCCTAA+AGG 0.529482 6_4:-33390640 Msa0985980:CDS
CCGGGATACAATAGATCGAT+TGG 0.532651 6_4:+33390742 None:intergenic
GCAGCACCAGCAACAAAAGC+AGG 0.536471 6_4:+33392403 None:intergenic
GGTAGTGGACTTATTTCAGT+TGG 0.542028 6_4:-33390330 Msa0985980:three_prime_UTR
ATAATGATGGTAGAAGTTGC+CGG 0.544164 6_4:+33390693 None:intergenic
ATTTGGATAGAAGATAATGA+TGG 0.547206 6_4:+33390680 None:intergenic
TGGTGATGAATAGTGATGGT+GGG 0.547912 6_4:+33392605 None:intergenic
AAGGTACAAAGTAGTACCTA+TGG 0.548955 6_4:+33390516 None:intergenic
GTTATTCAAATATAAGAGGT+AGG 0.557374 6_4:-33390351 Msa0985980:three_prime_UTR
ATCTTTGGTTCTTCAAGGTG+CGG 0.561222 6_4:-33392347 Msa0985980:CDS
CTACTTTGTACCTTCTGGGT+AGG 0.563778 6_4:-33390507 Msa0985980:CDS
GGAGTTATGCAACTAGAGAA+TGG 0.568134 6_4:-33390486 Msa0985980:CDS
GTGGTGATGAATAGTGATGG+TGG 0.569321 6_4:+33392604 None:intergenic
GTGATGAATAGTGATGGTGG+GGG 0.585799 6_4:+33392607 None:intergenic
TAGGAACGTGGAGAATGTCA+TGG 0.587780 6_4:+33392645 None:intergenic
CCAATCGATCTATTGTATCC+CGG 0.590454 6_4:-33390742 Msa0985980:CDS
GAATACAAGATTCCTAAAGG+TGG 0.614245 6_4:-33390637 Msa0985980:CDS
GGATACAATAGATCGATTGG+TGG 0.622127 6_4:+33390745 None:intergenic
CAGGTATCAACGAAGTTAGA+GGG 0.624741 6_4:-33392546 Msa0985980:CDS
TTGCATAACTCCTACCCAGA+AGG 0.636518 6_4:+33390497 None:intergenic
GTTCTGGAAGATTCGACGTG+AGG 0.646091 6_4:+33390767 None:intergenic
GAATAGGAAGTTTAGGAACG+TGG 0.656255 6_4:+33392633 None:intergenic
TGTGTCTCACTTGCAAACGC+AGG 0.665442 6_4:-33392565 Msa0985980:CDS
ATGGTGGTGATGAATAGTGA+TGG 0.705394 6_4:+33392601 None:intergenic
ACATGTTATGACAGACATGG+TGG 0.765146 6_4:+33392585 None:intergenic
GACACATGTTATGACAGACA+TGG 0.820382 6_4:+33392582 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATGATTTTAATTGTTGT+GGG - chr6_4:33390764-33390783 Msa0985980:CDS 15.0%
!! ACATATATATGTTTATAAGT+GGG + chr6_4:33391157-33391176 None:intergenic 15.0%
!! TTAAAATTCTGAATAAGATA+AGG + chr6_4:33391766-33391785 None:intergenic 15.0%
!!! TTTATGATTTTAATTGTTGT+GGG - chr6_4:33390764-33390783 Msa0985980:CDS 15.0%
!! ACATATATATGTTTATAAGT+GGG + chr6_4:33391157-33391176 None:intergenic 15.0%
!! TTAAAATTCTGAATAAGATA+AGG + chr6_4:33391766-33391785 None:intergenic 15.0%
!! ATTTAAACTATTCCAAATTC+TGG - chr6_4:33390456-33390475 Msa0985980:CDS 20.0%
!!! GTTTATGATTTTAATTGTTG+TGG - chr6_4:33390763-33390782 Msa0985980:CDS 20.0%
!!! TTTATTTTTGTTAGAACTTG+TGG - chr6_4:33390808-33390827 Msa0985980:CDS 20.0%
!!! CTATTTTGGTTTTAAATTTG+TGG - chr6_4:33390874-33390893 Msa0985980:CDS 20.0%
!!! TTATGTATGCTTTAAAGTTT+AGG - chr6_4:33390965-33390984 Msa0985980:intron 20.0%
!! ATAGTTATGCATTCTATTTA+AGG + chr6_4:33391009-33391028 None:intergenic 20.0%
!! ATCTTATAACCTTACAAAAT+CGG - chr6_4:33391111-33391130 Msa0985980:intron 20.0%
!! ATATATATGTTTATAAGTGG+GGG + chr6_4:33391155-33391174 None:intergenic 20.0%
!! CATATATATGTTTATAAGTG+GGG + chr6_4:33391156-33391175 None:intergenic 20.0%
!! CACATATATATGTTTATAAG+TGG + chr6_4:33391158-33391177 None:intergenic 20.0%
!! TAAATCTTTCTCATCAAATT+AGG - chr6_4:33391212-33391231 Msa0985980:intron 20.0%
!! AAATCTTTCTCATCAAATTA+GGG - chr6_4:33391213-33391232 Msa0985980:intron 20.0%
!!! ATGCAAGTATAATTTTAGTT+AGG - chr6_4:33391590-33391609 Msa0985980:intron 20.0%
!!! TTTATTGTGTGTTATTCTTT+TGG - chr6_4:33391664-33391683 Msa0985980:intron 20.0%
!! ACAAAATTAAATATAAGCTC+TGG + chr6_4:33391797-33391816 None:intergenic 20.0%
!! AGAAAATAACTTAGAGTTAT+GGG + chr6_4:33392158-33392177 None:intergenic 20.0%
!!! ATTATCTTTTTGAGATCATA+GGG - chr6_4:33392387-33392406 Msa0985980:CDS 20.0%
!! TGCAAAATTTAGAAGAAAAA+TGG + chr6_4:33392563-33392582 None:intergenic 20.0%
!! TGATGTTATTCAAATATAAG+AGG - chr6_4:33392620-33392639 Msa0985980:CDS 20.0%
!! ATTTAAACTATTCCAAATTC+TGG - chr6_4:33390456-33390475 Msa0985980:CDS 20.0%
!!! GTTTATGATTTTAATTGTTG+TGG - chr6_4:33390763-33390782 Msa0985980:CDS 20.0%
!!! TTTATTTTTGTTAGAACTTG+TGG - chr6_4:33390808-33390827 Msa0985980:CDS 20.0%
!!! CTATTTTGGTTTTAAATTTG+TGG - chr6_4:33390874-33390893 Msa0985980:CDS 20.0%
!!! TTATGTATGCTTTAAAGTTT+AGG - chr6_4:33390965-33390984 Msa0985980:intron 20.0%
!! ATAGTTATGCATTCTATTTA+AGG + chr6_4:33391009-33391028 None:intergenic 20.0%
!! ATCTTATAACCTTACAAAAT+CGG - chr6_4:33391111-33391130 Msa0985980:intron 20.0%
!! ATATATATGTTTATAAGTGG+GGG + chr6_4:33391155-33391174 None:intergenic 20.0%
!! CATATATATGTTTATAAGTG+GGG + chr6_4:33391156-33391175 None:intergenic 20.0%
!! CACATATATATGTTTATAAG+TGG + chr6_4:33391158-33391177 None:intergenic 20.0%
!! TAAATCTTTCTCATCAAATT+AGG - chr6_4:33391212-33391231 Msa0985980:intron 20.0%
!! AAATCTTTCTCATCAAATTA+GGG - chr6_4:33391213-33391232 Msa0985980:intron 20.0%
!!! ATGCAAGTATAATTTTAGTT+AGG - chr6_4:33391590-33391609 Msa0985980:intron 20.0%
!!! TTTATTGTGTGTTATTCTTT+TGG - chr6_4:33391664-33391683 Msa0985980:intron 20.0%
!! ACAAAATTAAATATAAGCTC+TGG + chr6_4:33391797-33391816 None:intergenic 20.0%
!! AGAAAATAACTTAGAGTTAT+GGG + chr6_4:33392158-33392177 None:intergenic 20.0%
!!! ATTATCTTTTTGAGATCATA+GGG - chr6_4:33392387-33392406 Msa0985980:CDS 20.0%
!! TGCAAAATTTAGAAGAAAAA+TGG + chr6_4:33392563-33392582 None:intergenic 20.0%
!! TGATGTTATTCAAATATAAG+AGG - chr6_4:33392620-33392639 Msa0985980:CDS 20.0%
! ATTATTTACGTTCCAGAATT+TGG + chr6_4:33390471-33390490 None:intergenic 25.0%
!!! TTTCTTTAAGAGAGTTTTTG+AGG - chr6_4:33390661-33390680 Msa0985980:CDS 25.0%
!!! CTTTTGTTTTAAAGAGTGTA+TGG - chr6_4:33390844-33390863 Msa0985980:CDS 25.0%
! TGATGTCCACTTATTAAAAT+GGG + chr6_4:33390901-33390920 None:intergenic 25.0%
! TTAAAGCATACATAAGTATG+TGG + chr6_4:33390960-33390979 None:intergenic 25.0%
! TATGATACAATCGTAGAATT+TGG - chr6_4:33391342-33391361 Msa0985980:intron 25.0%
!! CAATTTTGTAAGGTTAAGTT+AGG + chr6_4:33391374-33391393 None:intergenic 25.0%
! CTAACTTAACCTTACAAAAT+TGG - chr6_4:33391372-33391391 Msa0985980:intron 25.0%
!! GATTTTCACAATCCAAATTA+TGG + chr6_4:33391524-33391543 None:intergenic 25.0%
! GAGAAAATAACTTAGAGTTA+TGG + chr6_4:33392159-33392178 None:intergenic 25.0%
! ATTTGGATAGAAGATAATGA+TGG + chr6_4:33392298-33392317 None:intergenic 25.0%
! TATCTTCTATCCAAATTAAG+AGG - chr6_4:33392302-33392321 Msa0985980:intron 25.0%
! AAAGAATACAAGATTCCTAA+AGG - chr6_4:33392335-33392354 Msa0985980:CDS 25.0%
! ATGATCTCAAAAAGATAATG+AGG + chr6_4:33392386-33392405 None:intergenic 25.0%
!!! CATTATCTTTTTGAGATCAT+AGG - chr6_4:33392386-33392405 Msa0985980:CDS 25.0%
!! TGATTTTCCTAAGAATGTTA+AGG - chr6_4:33392529-33392548 Msa0985980:CDS 25.0%
!! ATAATAGCCTTAACATTCTT+AGG + chr6_4:33392539-33392558 None:intergenic 25.0%
! GTTATTCAAATATAAGAGGT+AGG - chr6_4:33392624-33392643 Msa0985980:CDS 25.0%
! ATTATTTACGTTCCAGAATT+TGG + chr6_4:33390471-33390490 None:intergenic 25.0%
!!! TTTCTTTAAGAGAGTTTTTG+AGG - chr6_4:33390661-33390680 Msa0985980:CDS 25.0%
!!! CTTTTGTTTTAAAGAGTGTA+TGG - chr6_4:33390844-33390863 Msa0985980:CDS 25.0%
! TGATGTCCACTTATTAAAAT+GGG + chr6_4:33390901-33390920 None:intergenic 25.0%
! TTAAAGCATACATAAGTATG+TGG + chr6_4:33390960-33390979 None:intergenic 25.0%
! TATGATACAATCGTAGAATT+TGG - chr6_4:33391342-33391361 Msa0985980:intron 25.0%
!! CAATTTTGTAAGGTTAAGTT+AGG + chr6_4:33391374-33391393 None:intergenic 25.0%
! CTAACTTAACCTTACAAAAT+TGG - chr6_4:33391372-33391391 Msa0985980:intron 25.0%
!! GATTTTCACAATCCAAATTA+TGG + chr6_4:33391524-33391543 None:intergenic 25.0%
! GAGAAAATAACTTAGAGTTA+TGG + chr6_4:33392159-33392178 None:intergenic 25.0%
! ATTTGGATAGAAGATAATGA+TGG + chr6_4:33392298-33392317 None:intergenic 25.0%
! TATCTTCTATCCAAATTAAG+AGG - chr6_4:33392302-33392321 Msa0985980:intron 25.0%
! AAAGAATACAAGATTCCTAA+AGG - chr6_4:33392335-33392354 Msa0985980:CDS 25.0%
! ATGATCTCAAAAAGATAATG+AGG + chr6_4:33392386-33392405 None:intergenic 25.0%
!!! CATTATCTTTTTGAGATCAT+AGG - chr6_4:33392386-33392405 Msa0985980:CDS 25.0%
!! TGATTTTCCTAAGAATGTTA+AGG - chr6_4:33392529-33392548 Msa0985980:CDS 25.0%
!! ATAATAGCCTTAACATTCTT+AGG + chr6_4:33392539-33392558 None:intergenic 25.0%
! GTTATTCAAATATAAGAGGT+AGG - chr6_4:33392624-33392643 Msa0985980:CDS 25.0%
!!! CATGGTTTTTTTGTTTTGTG+TGG + chr6_4:33390315-33390334 None:intergenic 30.0%
ATGAAATTGTCGAGTAAAAG+TGG - chr6_4:33390530-33390549 Msa0985980:CDS 30.0%
! AAAGATCTAAAACCATCATC+AGG + chr6_4:33390614-33390633 None:intergenic 30.0%
!!! TGATGATGGTTTTAGATCTT+TGG - chr6_4:33390613-33390632 Msa0985980:CDS 30.0%
!! TTTAGATCTTTGGTTCTTCA+AGG - chr6_4:33390623-33390642 Msa0985980:CDS 30.0%
TTGAGGTAATGTATAACCTA+TGG - chr6_4:33390678-33390697 Msa0985980:CDS 30.0%
ATCTCACATCATTAAACCAT+AGG + chr6_4:33390697-33390716 None:intergenic 30.0%
! TGTATGGCGAAATTCTATTT+TGG - chr6_4:33390860-33390879 Msa0985980:CDS 30.0%
GTGATGTCCACTTATTAAAA+TGG + chr6_4:33390902-33390921 None:intergenic 30.0%
TTATACACAACCGAAATAGT+GGG + chr6_4:33390933-33390952 None:intergenic 30.0%
ATTATACACAACCGAAATAG+TGG + chr6_4:33390934-33390953 None:intergenic 30.0%
!! TATGCTTTAAAGTTTAGGAG+AGG - chr6_4:33390970-33390989 Msa0985980:intron 30.0%
AACTATGTCTCTCTAATTGT+TGG - chr6_4:33391023-33391042 Msa0985980:intron 30.0%
! CTGATACCATGTAAGAATTT+TGG - chr6_4:33391079-33391098 Msa0985980:intron 30.0%
!!! ACCATGTAAGAATTTTGGTT+TGG - chr6_4:33391084-33391103 Msa0985980:intron 30.0%
!!! CCATGTAAGAATTTTGGTTT+GGG - chr6_4:33391085-33391104 Msa0985980:intron 30.0%
!!! CATTACATACCGATTTTGTA+AGG + chr6_4:33391123-33391142 None:intergenic 30.0%
CAAAATCGGTATGTAATGTT+AGG - chr6_4:33391125-33391144 Msa0985980:intron 30.0%
TTAAATTAAGAGTCTCACGT+TGG + chr6_4:33391195-33391214 None:intergenic 30.0%
! ACATACAAGCCAATTTTGTA+AGG + chr6_4:33391384-33391403 None:intergenic 30.0%
TACCTACATTAGAAGAGATA+TGG + chr6_4:33391438-33391457 None:intergenic 30.0%
GTACAAACCTACAATTAATG+CGG - chr6_4:33391489-33391508 Msa0985980:intron 30.0%
TTTGTTCCTAAGTATTTCGT+GGG - chr6_4:33391858-33391877 Msa0985980:intron 30.0%
CACTCAATATACACAAAATC+TGG + chr6_4:33392010-33392029 None:intergenic 30.0%
CTATTTGTCCACAAATATAG+TGG - chr6_4:33392107-33392126 Msa0985980:intron 30.0%
TACAAGAAACAATGTGATTC+CGG + chr6_4:33392255-33392274 None:intergenic 30.0%
CTATCCAAATTAAGAGGAAA+AGG - chr6_4:33392308-33392327 Msa0985980:intron 30.0%
! TTCACCTTTTCCTCTTAATT+TGG + chr6_4:33392315-33392334 None:intergenic 30.0%
!! TTTGAGATCATAGGGTTTTA+TGG - chr6_4:33392395-33392414 Msa0985980:CDS 30.0%
ATACAATGTCTGAGAAATGA+AGG + chr6_4:33392426-33392445 None:intergenic 30.0%
! TCTTCTAAATTTTGCAAGCT+AGG - chr6_4:33392567-33392586 Msa0985980:CDS 30.0%
!!! CATGGTTTTTTTGTTTTGTG+TGG + chr6_4:33390315-33390334 None:intergenic 30.0%
ATGAAATTGTCGAGTAAAAG+TGG - chr6_4:33390530-33390549 Msa0985980:CDS 30.0%
! AAAGATCTAAAACCATCATC+AGG + chr6_4:33390614-33390633 None:intergenic 30.0%
!!! TGATGATGGTTTTAGATCTT+TGG - chr6_4:33390613-33390632 Msa0985980:CDS 30.0%
!! TTTAGATCTTTGGTTCTTCA+AGG - chr6_4:33390623-33390642 Msa0985980:CDS 30.0%
TTGAGGTAATGTATAACCTA+TGG - chr6_4:33390678-33390697 Msa0985980:CDS 30.0%
ATCTCACATCATTAAACCAT+AGG + chr6_4:33390697-33390716 None:intergenic 30.0%
! TGTATGGCGAAATTCTATTT+TGG - chr6_4:33390860-33390879 Msa0985980:CDS 30.0%
GTGATGTCCACTTATTAAAA+TGG + chr6_4:33390902-33390921 None:intergenic 30.0%
TTATACACAACCGAAATAGT+GGG + chr6_4:33390933-33390952 None:intergenic 30.0%
ATTATACACAACCGAAATAG+TGG + chr6_4:33390934-33390953 None:intergenic 30.0%
!! TATGCTTTAAAGTTTAGGAG+AGG - chr6_4:33390970-33390989 Msa0985980:intron 30.0%
AACTATGTCTCTCTAATTGT+TGG - chr6_4:33391023-33391042 Msa0985980:intron 30.0%
! CTGATACCATGTAAGAATTT+TGG - chr6_4:33391079-33391098 Msa0985980:intron 30.0%
!!! ACCATGTAAGAATTTTGGTT+TGG - chr6_4:33391084-33391103 Msa0985980:intron 30.0%
!!! CCATGTAAGAATTTTGGTTT+GGG - chr6_4:33391085-33391104 Msa0985980:intron 30.0%
!!! CATTACATACCGATTTTGTA+AGG + chr6_4:33391123-33391142 None:intergenic 30.0%
CAAAATCGGTATGTAATGTT+AGG - chr6_4:33391125-33391144 Msa0985980:intron 30.0%
TTAAATTAAGAGTCTCACGT+TGG + chr6_4:33391195-33391214 None:intergenic 30.0%
! ACATACAAGCCAATTTTGTA+AGG + chr6_4:33391384-33391403 None:intergenic 30.0%
TACCTACATTAGAAGAGATA+TGG + chr6_4:33391438-33391457 None:intergenic 30.0%
GTACAAACCTACAATTAATG+CGG - chr6_4:33391489-33391508 Msa0985980:intron 30.0%
TTTGTTCCTAAGTATTTCGT+GGG - chr6_4:33391858-33391877 Msa0985980:intron 30.0%
CACTCAATATACACAAAATC+TGG + chr6_4:33392010-33392029 None:intergenic 30.0%
CTATTTGTCCACAAATATAG+TGG - chr6_4:33392107-33392126 Msa0985980:intron 30.0%
TACAAGAAACAATGTGATTC+CGG + chr6_4:33392255-33392274 None:intergenic 30.0%
CTATCCAAATTAAGAGGAAA+AGG - chr6_4:33392308-33392327 Msa0985980:intron 30.0%
! TTCACCTTTTCCTCTTAATT+TGG + chr6_4:33392315-33392334 None:intergenic 30.0%
!! TTTGAGATCATAGGGTTTTA+TGG - chr6_4:33392395-33392414 Msa0985980:CDS 30.0%
ATACAATGTCTGAGAAATGA+AGG + chr6_4:33392426-33392445 None:intergenic 30.0%
! TCTTCTAAATTTTGCAAGCT+AGG - chr6_4:33392567-33392586 Msa0985980:CDS 30.0%
!!! TGTGGTTTTCTGTGTTGTTT+TGG + chr6_4:33390297-33390316 None:intergenic 35.0%
!!! TTTTTGGTGTTTCCTGATGA+TGG - chr6_4:33390599-33390618 Msa0985980:CDS 35.0%
!! TGTGGACCCATTTTAATAAG+TGG - chr6_4:33390892-33390911 Msa0985980:intron 35.0%
CCCAAACCAAAATTCTTACA+TGG + chr6_4:33391088-33391107 None:intergenic 35.0%
AGTCTCACGTTGGATAAAAA+TGG + chr6_4:33391185-33391204 None:intergenic 35.0%
TGCTATTAAGTTTCCGCTAT+CGG + chr6_4:33391296-33391315 None:intergenic 35.0%
!! CAAAATTGGCTTGTATGTTG+AGG - chr6_4:33391386-33391405 Msa0985980:intron 35.0%
AGCCATATCTCTTCTAATGT+AGG - chr6_4:33391433-33391452 Msa0985980:intron 35.0%
TAATCCACCGCATTAATTGT+AGG + chr6_4:33391499-33391518 None:intergenic 35.0%
TGAAACCATACCTAATGCAA+TGG - chr6_4:33391546-33391565 Msa0985980:intron 35.0%
TCAATCCATTGCATTAGGTA+TGG + chr6_4:33391554-33391573 None:intergenic 35.0%
TCAACTCAATCCATTGCATT+AGG + chr6_4:33391559-33391578 None:intergenic 35.0%
TGTAATCTGTCAAAGTAGCA+AGG - chr6_4:33391634-33391653 Msa0985980:intron 35.0%
GTTTGTTCCTAAGTATTTCG+TGG - chr6_4:33391857-33391876 Msa0985980:intron 35.0%
CATAATCCCACGAAATACTT+AGG + chr6_4:33391867-33391886 None:intergenic 35.0%
! ATGTTTCTACTCTACTGTGT+AGG - chr6_4:33392082-33392101 Msa0985980:intron 35.0%
CCATAGAACCACTATATTTG+TGG + chr6_4:33392118-33392137 None:intergenic 35.0%
! CCACAAATATAGTGGTTCTA+TGG - chr6_4:33392115-33392134 Msa0985980:intron 35.0%
ACAAGAAACAATGTGATTCC+GGG + chr6_4:33392254-33392273 None:intergenic 35.0%
! GGAATCACATTGTTTCTTGT+AGG - chr6_4:33392254-33392273 Msa0985980:intron 35.0%
ATAATGATGGTAGAAGTTGC+CGG + chr6_4:33392285-33392304 None:intergenic 35.0%
GAATACAAGATTCCTAAAGG+TGG - chr6_4:33392338-33392357 Msa0985980:CDS 35.0%
AAATCAAACAAGCCACCTTT+AGG + chr6_4:33392353-33392372 None:intergenic 35.0%
AAGGTACAAAGTAGTACCTA+TGG + chr6_4:33392462-33392481 None:intergenic 35.0%
CAAATATAAGAGGTAGGTAG+TGG - chr6_4:33392630-33392649 Msa0985980:CDS 35.0%
!!! TGTGGTTTTCTGTGTTGTTT+TGG + chr6_4:33390297-33390316 None:intergenic 35.0%
!!! TTTTTGGTGTTTCCTGATGA+TGG - chr6_4:33390599-33390618 Msa0985980:CDS 35.0%
!! TGTGGACCCATTTTAATAAG+TGG - chr6_4:33390892-33390911 Msa0985980:intron 35.0%
CCCAAACCAAAATTCTTACA+TGG + chr6_4:33391088-33391107 None:intergenic 35.0%
AGTCTCACGTTGGATAAAAA+TGG + chr6_4:33391185-33391204 None:intergenic 35.0%
TGCTATTAAGTTTCCGCTAT+CGG + chr6_4:33391296-33391315 None:intergenic 35.0%
!! CAAAATTGGCTTGTATGTTG+AGG - chr6_4:33391386-33391405 Msa0985980:intron 35.0%
AGCCATATCTCTTCTAATGT+AGG - chr6_4:33391433-33391452 Msa0985980:intron 35.0%
TAATCCACCGCATTAATTGT+AGG + chr6_4:33391499-33391518 None:intergenic 35.0%
TGAAACCATACCTAATGCAA+TGG - chr6_4:33391546-33391565 Msa0985980:intron 35.0%
TCAATCCATTGCATTAGGTA+TGG + chr6_4:33391554-33391573 None:intergenic 35.0%
TCAACTCAATCCATTGCATT+AGG + chr6_4:33391559-33391578 None:intergenic 35.0%
TGTAATCTGTCAAAGTAGCA+AGG - chr6_4:33391634-33391653 Msa0985980:intron 35.0%
GTTTGTTCCTAAGTATTTCG+TGG - chr6_4:33391857-33391876 Msa0985980:intron 35.0%
CATAATCCCACGAAATACTT+AGG + chr6_4:33391867-33391886 None:intergenic 35.0%
! ATGTTTCTACTCTACTGTGT+AGG - chr6_4:33392082-33392101 Msa0985980:intron 35.0%
CCATAGAACCACTATATTTG+TGG + chr6_4:33392118-33392137 None:intergenic 35.0%
! CCACAAATATAGTGGTTCTA+TGG - chr6_4:33392115-33392134 Msa0985980:intron 35.0%
ACAAGAAACAATGTGATTCC+GGG + chr6_4:33392254-33392273 None:intergenic 35.0%
! GGAATCACATTGTTTCTTGT+AGG - chr6_4:33392254-33392273 Msa0985980:intron 35.0%
ATAATGATGGTAGAAGTTGC+CGG + chr6_4:33392285-33392304 None:intergenic 35.0%
GAATACAAGATTCCTAAAGG+TGG - chr6_4:33392338-33392357 Msa0985980:CDS 35.0%
AAATCAAACAAGCCACCTTT+AGG + chr6_4:33392353-33392372 None:intergenic 35.0%
AAGGTACAAAGTAGTACCTA+TGG + chr6_4:33392462-33392481 None:intergenic 35.0%
CAAATATAAGAGGTAGGTAG+TGG - chr6_4:33392630-33392649 Msa0985980:CDS 35.0%
!!! GTTGTTTTGGAACTGTGCTT+TGG + chr6_4:33390284-33390303 None:intergenic 40.0%
GAATAGGAAGTTTAGGAACG+TGG + chr6_4:33390345-33390364 None:intergenic 40.0%
! TGGTGATGAATAGTGATGGT+GGG + chr6_4:33390373-33390392 None:intergenic 40.0%
! ATGGTGGTGATGAATAGTGA+TGG + chr6_4:33390377-33390396 None:intergenic 40.0%
ACATGTTATGACAGACATGG+TGG + chr6_4:33390393-33390412 None:intergenic 40.0%
GACACATGTTATGACAGACA+TGG + chr6_4:33390396-33390415 None:intergenic 40.0%
CAGGTATCAACGAAGTTAGA+GGG - chr6_4:33390429-33390448 Msa0985980:CDS 40.0%
!! TATACTCCTGCTTTTGTTGC+TGG - chr6_4:33390566-33390585 Msa0985980:CDS 40.0%
!! ATCTTTGGTTCTTCAAGGTG+CGG - chr6_4:33390628-33390647 Msa0985980:CDS 40.0%
GGGAATTGACATTGTTACGT+AGG - chr6_4:33390784-33390803 Msa0985980:CDS 40.0%
TAATAAGTGGACATCACTCG+TGG - chr6_4:33390905-33390924 Msa0985980:intron 40.0%
AGTAAGCGTGTCCAACAATT+CGG - chr6_4:33391054-33391073 Msa0985980:intron 40.0%
TAACACATAGTCTCGTACCA+AGG - chr6_4:33391241-33391260 Msa0985980:intron 40.0%
GCTATTAAGTTTCCGCTATC+GGG + chr6_4:33391295-33391314 None:intergenic 40.0%
AGCGGAAACTTAATAGCAAG+TGG - chr6_4:33391298-33391317 Msa0985980:intron 40.0%
CTTAATAGCAAGTGGCCAAA+CGG - chr6_4:33391306-33391325 Msa0985980:intron 40.0%
TAGGTTTGTACTTACTGCTG+AGG + chr6_4:33391480-33391499 None:intergenic 40.0%
CAAACCTACAATTAATGCGG+TGG - chr6_4:33391492-33391511 Msa0985980:intron 40.0%
!! CGGTGGATTAGACCATAATT+TGG - chr6_4:33391509-33391528 Msa0985980:intron 40.0%
! AATAGATCGATTGGTGGTTC+TGG + chr6_4:33392227-33392246 None:intergenic 40.0%
GGATACAATAGATCGATTGG+TGG + chr6_4:33392233-33392252 None:intergenic 40.0%
CCAATCGATCTATTGTATCC+CGG - chr6_4:33392233-33392252 Msa0985980:intron 40.0%
! TTGTTTCTTGTAGGCATCAC+CGG - chr6_4:33392263-33392282 Msa0985980:intron 40.0%
TATTCGTTCTCTTTCGCCAT+AGG - chr6_4:33392443-33392462 Msa0985980:CDS 40.0%
AGGTACTACTTTGTACCTTC+TGG - chr6_4:33392463-33392482 Msa0985980:CDS 40.0%
GGTACTACTTTGTACCTTCT+GGG - chr6_4:33392464-33392483 Msa0985980:CDS 40.0%
GGAGTTATGCAACTAGAGAA+TGG - chr6_4:33392489-33392508 Msa0985980:CDS 40.0%
!! GGTAGTGGACTTATTTCAGT+TGG - chr6_4:33392645-33392664 Msa0985980:CDS 40.0%
!!! GTTGTTTTGGAACTGTGCTT+TGG + chr6_4:33390284-33390303 None:intergenic 40.0%
GAATAGGAAGTTTAGGAACG+TGG + chr6_4:33390345-33390364 None:intergenic 40.0%
! TGGTGATGAATAGTGATGGT+GGG + chr6_4:33390373-33390392 None:intergenic 40.0%
! ATGGTGGTGATGAATAGTGA+TGG + chr6_4:33390377-33390396 None:intergenic 40.0%
ACATGTTATGACAGACATGG+TGG + chr6_4:33390393-33390412 None:intergenic 40.0%
GACACATGTTATGACAGACA+TGG + chr6_4:33390396-33390415 None:intergenic 40.0%
CAGGTATCAACGAAGTTAGA+GGG - chr6_4:33390429-33390448 Msa0985980:CDS 40.0%
!! TATACTCCTGCTTTTGTTGC+TGG - chr6_4:33390566-33390585 Msa0985980:CDS 40.0%
!! ATCTTTGGTTCTTCAAGGTG+CGG - chr6_4:33390628-33390647 Msa0985980:CDS 40.0%
GGGAATTGACATTGTTACGT+AGG - chr6_4:33390784-33390803 Msa0985980:CDS 40.0%
TAATAAGTGGACATCACTCG+TGG - chr6_4:33390905-33390924 Msa0985980:intron 40.0%
AGTAAGCGTGTCCAACAATT+CGG - chr6_4:33391054-33391073 Msa0985980:intron 40.0%
TAACACATAGTCTCGTACCA+AGG - chr6_4:33391241-33391260 Msa0985980:intron 40.0%
GCTATTAAGTTTCCGCTATC+GGG + chr6_4:33391295-33391314 None:intergenic 40.0%
AGCGGAAACTTAATAGCAAG+TGG - chr6_4:33391298-33391317 Msa0985980:intron 40.0%
CTTAATAGCAAGTGGCCAAA+CGG - chr6_4:33391306-33391325 Msa0985980:intron 40.0%
TAGGTTTGTACTTACTGCTG+AGG + chr6_4:33391480-33391499 None:intergenic 40.0%
CAAACCTACAATTAATGCGG+TGG - chr6_4:33391492-33391511 Msa0985980:intron 40.0%
!! CGGTGGATTAGACCATAATT+TGG - chr6_4:33391509-33391528 Msa0985980:intron 40.0%
! AATAGATCGATTGGTGGTTC+TGG + chr6_4:33392227-33392246 None:intergenic 40.0%
GGATACAATAGATCGATTGG+TGG + chr6_4:33392233-33392252 None:intergenic 40.0%
CCAATCGATCTATTGTATCC+CGG - chr6_4:33392233-33392252 Msa0985980:intron 40.0%
! TTGTTTCTTGTAGGCATCAC+CGG - chr6_4:33392263-33392282 Msa0985980:intron 40.0%
TATTCGTTCTCTTTCGCCAT+AGG - chr6_4:33392443-33392462 Msa0985980:CDS 40.0%
AGGTACTACTTTGTACCTTC+TGG - chr6_4:33392463-33392482 Msa0985980:CDS 40.0%
GGTACTACTTTGTACCTTCT+GGG - chr6_4:33392464-33392483 Msa0985980:CDS 40.0%
GGAGTTATGCAACTAGAGAA+TGG - chr6_4:33392489-33392508 Msa0985980:CDS 40.0%
!! GGTAGTGGACTTATTTCAGT+TGG - chr6_4:33392645-33392664 Msa0985980:CDS 40.0%
TAGGAACGTGGAGAATGTCA+TGG + chr6_4:33390333-33390352 None:intergenic 45.0%
!! GTGATGAATAGTGATGGTGG+GGG + chr6_4:33390371-33390390 None:intergenic 45.0%
! GGTGATGAATAGTGATGGTG+GGG + chr6_4:33390372-33390391 None:intergenic 45.0%
! GTGGTGATGAATAGTGATGG+TGG + chr6_4:33390374-33390393 None:intergenic 45.0%
GCAGGTATCAACGAAGTTAG+AGG - chr6_4:33390428-33390447 Msa0985980:CDS 45.0%
ACTCGTGGATCCCACTATTT+CGG - chr6_4:33390920-33390939 Msa0985980:intron 45.0%
TGGTATCAGAGCCGAATTGT+TGG + chr6_4:33391068-33391087 None:intergenic 45.0%
TAGCCTATCCAAGATCCGTT+TGG + chr6_4:33391324-33391343 None:intergenic 45.0%
CCGGGATACAATAGATCGAT+TGG + chr6_4:33392236-33392255 None:intergenic 45.0%
CTACTTTGTACCTTCTGGGT+AGG - chr6_4:33392468-33392487 Msa0985980:CDS 45.0%
TTGCATAACTCCTACCCAGA+AGG + chr6_4:33392481-33392500 None:intergenic 45.0%
TAGGAACGTGGAGAATGTCA+TGG + chr6_4:33390333-33390352 None:intergenic 45.0%
!! GTGATGAATAGTGATGGTGG+GGG + chr6_4:33390371-33390390 None:intergenic 45.0%
! GGTGATGAATAGTGATGGTG+GGG + chr6_4:33390372-33390391 None:intergenic 45.0%
! GTGGTGATGAATAGTGATGG+TGG + chr6_4:33390374-33390393 None:intergenic 45.0%
GCAGGTATCAACGAAGTTAG+AGG - chr6_4:33390428-33390447 Msa0985980:CDS 45.0%
ACTCGTGGATCCCACTATTT+CGG - chr6_4:33390920-33390939 Msa0985980:intron 45.0%
TGGTATCAGAGCCGAATTGT+TGG + chr6_4:33391068-33391087 None:intergenic 45.0%
TAGCCTATCCAAGATCCGTT+TGG + chr6_4:33391324-33391343 None:intergenic 45.0%
CCGGGATACAATAGATCGAT+TGG + chr6_4:33392236-33392255 None:intergenic 45.0%
CTACTTTGTACCTTCTGGGT+AGG - chr6_4:33392468-33392487 Msa0985980:CDS 45.0%
TTGCATAACTCCTACCCAGA+AGG + chr6_4:33392481-33392500 None:intergenic 45.0%
GGGGTGGGAATAGGAAGTTT+AGG + chr6_4:33390352-33390371 None:intergenic 50.0%
!! TGAATAGTGATGGTGGGGGT+GGG + chr6_4:33390367-33390386 None:intergenic 50.0%
!! ATGAATAGTGATGGTGGGGG+TGG + chr6_4:33390368-33390387 None:intergenic 50.0%
TGTGTCTCACTTGCAAACGC+AGG - chr6_4:33390410-33390429 Msa0985980:exon 50.0%
GGTTCTTCAAGGTGCGGTTA+CGG - chr6_4:33390634-33390653 Msa0985980:CDS 50.0%
CATAGTCTCGTACCAAGGAC+TGG - chr6_4:33391246-33391265 Msa0985980:intron 50.0%
ACACTCTGATGTCCAGTCCT+TGG + chr6_4:33391261-33391280 None:intergenic 50.0%
TAACCCGATTGACCCGATAG+CGG - chr6_4:33391280-33391299 Msa0985980:intron 50.0%
TTTCCGCTATCGGGTCAATC+GGG + chr6_4:33391286-33391305 None:intergenic 50.0%
GTTTCCGCTATCGGGTCAAT+CGG + chr6_4:33391287-33391306 None:intergenic 50.0%
TGGCCAAACGGATCTTGGAT+AGG - chr6_4:33391318-33391337 Msa0985980:intron 50.0%
!! GTTCTGGAAGATTCGACGTG+AGG + chr6_4:33392211-33392230 None:intergenic 50.0%
GGGGTGGGAATAGGAAGTTT+AGG + chr6_4:33390352-33390371 None:intergenic 50.0%
!! TGAATAGTGATGGTGGGGGT+GGG + chr6_4:33390367-33390386 None:intergenic 50.0%
!! ATGAATAGTGATGGTGGGGG+TGG + chr6_4:33390368-33390387 None:intergenic 50.0%
TGTGTCTCACTTGCAAACGC+AGG - chr6_4:33390410-33390429 Msa0985980:exon 50.0%
GGTTCTTCAAGGTGCGGTTA+CGG - chr6_4:33390634-33390653 Msa0985980:CDS 50.0%
CATAGTCTCGTACCAAGGAC+TGG - chr6_4:33391246-33391265 Msa0985980:intron 50.0%
ACACTCTGATGTCCAGTCCT+TGG + chr6_4:33391261-33391280 None:intergenic 50.0%
TAACCCGATTGACCCGATAG+CGG - chr6_4:33391280-33391299 Msa0985980:intron 50.0%
TTTCCGCTATCGGGTCAATC+GGG + chr6_4:33391286-33391305 None:intergenic 50.0%
GTTTCCGCTATCGGGTCAAT+CGG + chr6_4:33391287-33391306 None:intergenic 50.0%
TGGCCAAACGGATCTTGGAT+AGG - chr6_4:33391318-33391337 Msa0985980:intron 50.0%
!! GTTCTGGAAGATTCGACGTG+AGG + chr6_4:33392211-33392230 None:intergenic 50.0%
GCAGCACCAGCAACAAAAGC+AGG + chr6_4:33390575-33390594 None:intergenic 55.0%
!!! TGCTGGTGCTGCGTCGTTTT+TGG - chr6_4:33390583-33390602 Msa0985980:CDS 55.0%
GCAAGTGGCCAAACGGATCT+TGG - chr6_4:33391313-33391332 Msa0985980:intron 55.0%
GCAGCACCAGCAACAAAAGC+AGG + chr6_4:33390575-33390594 None:intergenic 55.0%
!!! TGCTGGTGCTGCGTCGTTTT+TGG - chr6_4:33390583-33390602 Msa0985980:CDS 55.0%
GCAAGTGGCCAAACGGATCT+TGG - chr6_4:33391313-33391332 Msa0985980:intron 55.0%
!! GTGATGGTGGGGGTGGGAAT+AGG + chr6_4:33390361-33390380 None:intergenic 60.0%
!! GTGATGGTGGGGGTGGGAAT+AGG + chr6_4:33390361-33390380 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 33390276 33392721 33390276 ID=Msa0985980;Name=Msa0985980
chr6_4 mRNA 33390276 33392721 33390276 ID=Msa0985980-mRNA-1;Parent=Msa0985980;Name=Msa0985980-mRNA-1;_AED=0.02;_eAED=0.02;_QI=56|1|1|1|1|1|2|147|273
chr6_4 exon 33390276 33390893 33390276 ID=Msa0985980-mRNA-1:exon:8767;Parent=Msa0985980-mRNA-1
chr6_4 exon 33392315 33392721 33392315 ID=Msa0985980-mRNA-1:exon:8766;Parent=Msa0985980-mRNA-1
chr6_4 five_prime_UTR 33392666 33392721 33392666 ID=Msa0985980-mRNA-1:five_prime_utr;Parent=Msa0985980-mRNA-1
chr6_4 CDS 33392315 33392665 33392315 ID=Msa0985980-mRNA-1:cds;Parent=Msa0985980-mRNA-1
chr6_4 CDS 33390423 33390893 33390423 ID=Msa0985980-mRNA-1:cds;Parent=Msa0985980-mRNA-1
chr6_4 three_prime_UTR 33390276 33390422 33390276 ID=Msa0985980-mRNA-1:three_prime_utr;Parent=Msa0985980-mRNA-1
Gene Sequence

>Msa0985980

ATGACATTCTCCACGTTCCTAAACTTCCTATTCCCACCCCCACCATCACTATTCATCACCACCATGTCTGTCATAACATGTGTCTCACTTGCAAACGCAGGTATCAACGAAGTTAGAGGGAAGCATTTAAACTATTCCAAATTCTGGAACGTAAATAATAACAATGATGAAAAAAAGAAGAAGAAGAAGAAGAAGATGATGAAATTGTCGAGTAAAAGTGGTATGTTGTTGTTGTATACTCCTGCTTTTGTTGCTGGTGCTGCGTCGTTTTTGGTGTTTCCTGATGATGGTTTTAGATCTTTGGTTCTTCAAGGTGCGGTTACGGTTCATTTCTTTAAGAGAGTTTTTGAGGTTCTATTTGTCCACAAATATAGTGGTTCTATGGCTCTTGAAACTGCAATTCCCATAACTCTAAGTTATTTTCTCTCATCTGCAACTATGATTTATACTCAACACCTCACGTCGAATCTTCCAGAACCACCAATCGATCTATTGTATCCCGGAATCACATTGTTTCTTGTAGGCATCACCGGCAACTTCTACCATCATTATCTTCTATCCAAATTAAGAGGAAAAGGTGAAAAAGAATACAAGATTCCTAAAGGTGGCTTGTTTGATTTTGTGATATGTCCTCATTATCTTTTTGAGATCATAGGGTTTTATGGTTTTTCCTTCATTTCTCAGACATTGTATTCGTTCTCTTTCGCCATAGGTACTACTTTGTACCTTCTGGGTAGGAGTTATGCAACTAGAGAATGGTATCTCTCTAAATTTGATGATTTTCCTAAGAATGTTAAGGCTATTATTCCATTTTTCTTCTAA

Protein sequence

>Msa0985980

MTFSTFLNFLFPPPPSLFITTMSVITCVSLANAGINEVRGKHLNYSKFWNVNNNNDEKKKKKKKKMMKLSSKSGMLLLYTPAFVAGAASFLVFPDDGFRSLVLQGAVTVHFFKRVFEVLFVHKYSGSMALETAIPITLSYFLSSATMIYTQHLTSNLPEPPIDLLYPGITLFLVGITGNFYHHYLLSKLRGKGEKEYKIPKGGLFDFVICPHYLFEIIGFYGFSFISQTLYSFSFAIGTTLYLLGRSYATREWYLSKFDDFPKNVKAIIPFFF*