AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0940400


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0940400 MtrunA17_Chr6g0456031 98.148 486 9 0 1 486 1 486 0.0 982
Msa0940400 MtrunA17_Chr1g0204511 75.887 423 102 0 60 482 38 460 0.0 683
Msa0940400 MtrunA17_Chr6g0456021 96.000 75 3 0 412 486 10 84 8.02e-48 159
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0940400 AT1G19920.1 76.132 486 106 2 1 486 1 476 0.0 773
Msa0940400 AT3G22890.1 77.273 418 93 1 56 473 34 449 0.0 679
Msa0940400 AT4G14680.1 69.783 460 136 1 26 482 1 460 0.0 673
Msa0940400 AT5G43780.1 76.134 419 96 2 59 476 41 456 0.0 666
Msa0940400 AT4G14680.2 69.811 424 125 1 26 446 1 424 0.0 618

Find 153 sgRNAs with CRISPR-Local

Find 315 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATAAAATTTGATTCTTAAA+AGG 0.151066 6_3:+12774173 None:intergenic
AATAAACTGCAAACAATTTA+TGG 0.166202 6_3:-12768939 Msa0940400:three_prime_UTR
CCAGCTGGAAATTGGCTTAT+TGG 0.189416 6_3:-12771774 Msa0940400:CDS
AGAAACTAATTGTAACTTAA+TGG 0.217487 6_3:+12773788 None:intergenic
CTTAATGGTTAGAGACATTA+TGG 0.240392 6_3:+12773803 None:intergenic
AAGTTCTTCTACATAACTTA+TGG 0.273185 6_3:+12769047 None:intergenic
TCATTACCCCAGCTGGAAAT+TGG 0.286151 6_3:-12771782 Msa0940400:CDS
TGTATTGGTGGGACCATAAT+TGG 0.287618 6_3:+12774072 None:intergenic
TTAACAAGGCATGACCATTA+TGG 0.305379 6_3:+12771613 None:intergenic
AGATGCATCAAAATATGAAT+TGG 0.307760 6_3:+12774103 None:intergenic
ACACTATCTACTAGAACTTA+TGG 0.314779 6_3:+12768978 None:intergenic
ATAACAACCACCTATGACTA+TGG 0.315948 6_3:+12773940 None:intergenic
TTGGCTTATTGGAGGAGATT+TGG 0.324311 6_3:-12771763 Msa0940400:CDS
TAATGAGTTTAGGCCTTGTT+TGG 0.326623 6_3:-12769204 Msa0940400:three_prime_UTR
GAATTCTTCACGAAGTTGTT+TGG 0.332061 6_3:+12771686 None:intergenic
AAGTTATGTAGAAGAACTTA+TGG 0.336318 6_3:-12769043 Msa0940400:three_prime_UTR
TGAAAATGAAAGAGAATCTA+AGG 0.339569 6_3:-12773535 Msa0940400:CDS
TTTCATTTCCTAATGAGTTT+AGG 0.340392 6_3:-12769214 Msa0940400:three_prime_UTR
GATCAAGAACTCCATCTTCT+AGG 0.341116 6_3:+12770950 None:intergenic
CGCCTTTCAGTTAAGAAATC+CGG 0.363354 6_3:-12771637 Msa0940400:CDS
TTTCTTCCAAAACCCACTTT+TGG 0.368462 6_3:-12773684 Msa0940400:CDS
GTGGAGCAGGGTGAGAATAT+TGG 0.374902 6_3:+12774134 None:intergenic
AGACCATCATTGTATTTGAT+AGG 0.381497 6_3:+12771729 None:intergenic
AATTCTTCACGAAGTTGTTT+GGG 0.383556 6_3:+12771687 None:intergenic
ATATTGTTGGTATTCTTAGA+AGG 0.384953 6_3:-12773248 Msa0940400:intron
TAATGAATTGTTACCAAAAG+TGG 0.391056 6_3:+12773671 None:intergenic
TTGTTACCAAAAGTGGGTTT+TGG 0.393057 6_3:+12773678 None:intergenic
AAACAAGGCCTAAACTCATT+AGG 0.402457 6_3:+12769206 None:intergenic
GATGAGACTAAAGAGAGAAT+TGG 0.403307 6_3:-12773309 Msa0940400:CDS
CAACATCTCGATCAAGAATT+CGG 0.404393 6_3:-12769282 Msa0940400:three_prime_UTR
GATTGTTAAGAGTAAAACTT+AGG 0.405988 6_3:-12769332 Msa0940400:three_prime_UTR
GAGACATTATGGGAAATTGA+TGG 0.406457 6_3:+12773814 None:intergenic
TTGGATCTTCTTCTAATGTT+GGG 0.411009 6_3:-12773290 Msa0940400:CDS
TGCATGTGATTGGTGAAGGT+TGG 0.412816 6_3:-12773455 Msa0940400:CDS
GCATGTGATTGGTGAAGGTT+GGG 0.416423 6_3:-12773454 Msa0940400:CDS
TCCTCGACGTAAGGCAATCC+TGG 0.418206 6_3:+12771807 None:intergenic
TGGTCGCGATCCCGCTGGTA+TGG 0.419632 6_3:-12770815 Msa0940400:CDS
GGGTGTATTAGTAGATCTTA+TGG 0.425869 6_3:-12773562 Msa0940400:CDS
ATTGGATCTTCTTCTAATGT+TGG 0.426404 6_3:-12773291 Msa0940400:CDS
TCCTGGAGCGGTTGTTCCCC+AGG 0.427533 6_3:+12771824 None:intergenic
TTATGGGAAATTGATGGTTA+TGG 0.427762 6_3:+12773820 None:intergenic
ACGATGTTCCGTTAGATGTC+AGG 0.428955 6_3:-12771503 Msa0940400:CDS
TTATTGCTTCATCCTCTTGG+AGG 0.441232 6_3:-12771540 Msa0940400:CDS
TCTTCATAGGTCCTAGAAGA+TGG 0.441665 6_3:-12770961 Msa0940400:intron
AGAGGATGAAGCAATAAAAT+CGG 0.442710 6_3:+12771546 None:intergenic
TCCCTCATGAAACCCTTCAA+TGG 0.443998 6_3:+12773426 None:intergenic
TTAAAAGATGCAATTTGTAT+TGG 0.444130 6_3:+12774057 None:intergenic
GATGCATCAAAATATGAATT+GGG 0.445762 6_3:+12774104 None:intergenic
TCTTCTAATGTTGGGTTGAT+CGG 0.448631 6_3:-12773282 Msa0940400:CDS
AAAGATGCAATTTGTATTGG+TGG 0.449349 6_3:+12774060 None:intergenic
TTTGAATGGGTGCATGTGAT+TGG 0.451287 6_3:-12773465 Msa0940400:CDS
ATAGAAACTATGGTCGTCTC+AGG 0.463779 6_3:+12770928 None:intergenic
TCATCAATAGACAAAACAAT+AGG 0.464015 6_3:+12773330 None:intergenic
GAAATTGATGGTTATGGTGT+TGG 0.467521 6_3:+12773826 None:intergenic
GGTCGCGATCCCGCTGGTAT+GGG 0.473901 6_3:-12770814 Msa0940400:CDS
TGGGTCACCCAACCGAGAAA+AGG 0.474264 6_3:-12770795 Msa0940400:CDS
GGTGCCAACTTCTATATTGT+TGG 0.475062 6_3:-12770835 Msa0940400:CDS
AGAGAGAAAGAGAAGAACGT+GGG 0.480312 6_3:+12773851 None:intergenic
AATTCACTTAGGTTGAATGA+TGG 0.481658 6_3:-12773375 Msa0940400:CDS
ACCTGGGGAACAACCGCTCC+AGG 0.486179 6_3:-12771825 Msa0940400:CDS
GTGAGAATATTGGACTGAAA+AGG 0.487906 6_3:+12774144 None:intergenic
TGATGGAAATATAGAAACTA+TGG 0.488108 6_3:+12770918 None:intergenic
ATATGAATTGGGACTGAAAG+TGG 0.491966 6_3:+12774115 None:intergenic
CCAATAAGCCAATTTCCAGC+TGG 0.501071 6_3:+12771774 None:intergenic
CTTGGGCACATAAATCCATC+TGG 0.501128 6_3:+12769486 None:intergenic
GACTTGTATGACCCTGATCA+TGG 0.501622 6_3:-12770772 Msa0940400:CDS
TTAATGGTTAGAGACATTAT+GGG 0.501942 6_3:+12773804 None:intergenic
CGAATTCTTGATCGAGATGT+TGG 0.502053 6_3:+12769283 None:intergenic
AACATGTTCGCCATAGTCAT+AGG 0.503235 6_3:-12773950 Msa0940400:five_prime_UTR
ATTGTTGGTCGCGATCCCGC+TGG 0.504920 6_3:-12770820 Msa0940400:CDS
AGGTTGGGCTAGTCCATTGA+AGG 0.507084 6_3:-12773439 Msa0940400:CDS
AAGATGCAATTTGTATTGGT+GGG 0.507311 6_3:+12774061 None:intergenic
AAACCTATCAAATACAATGA+TGG 0.508307 6_3:-12771732 Msa0940400:CDS
AAGAAAGAATAGCTAGAACC+TGG 0.509563 6_3:-12771842 Msa0940400:CDS
GGGTCACCCAACCGAGAAAA+GGG 0.511039 6_3:-12770794 Msa0940400:CDS
GCATGCCATTGAACTTCAGT+TGG 0.512655 6_3:+12770877 None:intergenic
TTAAGAAATCCGGTCCATAA+TGG 0.512744 6_3:-12771627 Msa0940400:CDS
GGACCTGATGGAGATATTGT+TGG 0.513183 6_3:-12773261 Msa0940400:CDS
ACAAGAACTTTCCATCCACT+TGG 0.514482 6_3:+12769468 None:intergenic
CAATAAGCCAATTTCCAGCT+GGG 0.515649 6_3:+12771775 None:intergenic
GAGAGAAAGAGAAGAACGTG+GGG 0.518619 6_3:+12773852 None:intergenic
CAGGTCCAACTGAAGTTCAA+TGG 0.520945 6_3:-12770882 Msa0940400:CDS
AATGAATTGTTACCAAAAGT+GGG 0.521221 6_3:+12773672 None:intergenic
TGGATTGGATTCACAAGAAG+TGG 0.523625 6_3:+12773972 None:intergenic
GCTGGAAATTGGCTTATTGG+AGG 0.523653 6_3:-12771771 Msa0940400:CDS
CCATCACCTATGCATTATGC+AGG 0.524244 6_3:-12770901 Msa0940400:CDS
GAGGAGGTCATTACCCCAGC+TGG 0.525207 6_3:-12771789 Msa0940400:CDS
ATACCAACAATATCTCCATC+AGG 0.526353 6_3:+12773258 None:intergenic
ATGATGGTCTTGATAACTAC+AGG 0.527746 6_3:-12771716 Msa0940400:CDS
AGTTATGTAGAAGAACTTAT+GGG 0.532307 6_3:-12769042 Msa0940400:three_prime_UTR
GCGAAGGCACGGATAAATGC+AGG 0.536255 6_3:-12770856 Msa0940400:CDS
AGAAAGAATAGCTAGAACCT+GGG 0.539463 6_3:-12771841 Msa0940400:CDS
ATGTTAAGCTTCTCGAGACC+AGG 0.540824 6_3:+12770727 None:intergenic
CTATGGCGAACATGTTGGAT+TGG 0.542474 6_3:+12773957 None:intergenic
GAAAATCTTTAGCACGGCTA+GGG 0.547824 6_3:+12770176 None:intergenic
GCTCTTTGATAGAACCAGAT+GGG 0.548424 6_3:-12773584 Msa0940400:CDS
TTCAATGGCATGCGAAGGCA+CGG 0.550427 6_3:-12770867 Msa0940400:CDS
GATTTATGTGCCCAAGTGGA+TGG 0.551324 6_3:-12769479 Msa0940400:CDS
TCTCTTTATATCTGGAACCA+AGG 0.552725 6_3:-12770155 Msa0940400:intron
CAAGAACTTTCCATCCACTT+GGG 0.554086 6_3:+12769469 None:intergenic
AAGGTGCTTAGCATGGCTCC+TGG 0.555425 6_3:-12770745 Msa0940400:CDS
ATTGGGACTGAAAGTGGAGC+AGG 0.555886 6_3:+12774121 None:intergenic
TATGACTATGGCGAACATGT+TGG 0.556711 6_3:+12773952 None:intergenic
ATTGTTAAGAGTAAAACTTA+GGG 0.556928 6_3:-12769331 Msa0940400:three_prime_UTR
TGAAGCTAAGTCACTACCTA+AGG 0.557937 6_3:-12773508 Msa0940400:CDS
GCGACCAACAATATAGAAGT+TGG 0.559340 6_3:+12770831 None:intergenic
AAAGTTAAGAGAAGAATGCA+AGG 0.565798 6_3:-12773624 Msa0940400:CDS
GTAATGACCTCCTCGACGTA+AGG 0.566010 6_3:+12771798 None:intergenic
GACCGGATTTCTTAACTGAA+AGG 0.569641 6_3:+12771635 None:intergenic
TGCTCCATCCTGACATCTAA+CGG 0.570183 6_3:+12771495 None:intergenic
CTCTTTGATAGAACCAGATG+GGG 0.576508 6_3:-12773583 Msa0940400:CDS
AGAAAATCTTTAGCACGGCT+AGG 0.576934 6_3:+12770175 None:intergenic
GGTTGCAGCTTATGACACTA+AGG 0.577228 6_3:-12770221 Msa0940400:CDS
GCAATACTACTTACCCTGAA+AGG 0.578442 6_3:+12770700 None:intergenic
ACGAGTATCGTTCATTAACA+AGG 0.579648 6_3:+12771599 None:intergenic
GTTGGGTTGATCGGACCTGA+TGG 0.579904 6_3:-12773273 Msa0940400:CDS
GAGAGAGAAAGAGAAGAACG+TGG 0.584513 6_3:+12773850 None:intergenic
GTCCATTGAAGGGTTTCATG+AGG 0.585950 6_3:-12773428 Msa0940400:CDS
TAAAGAGAAAATCTTTAGCA+CGG 0.586779 6_3:+12770170 None:intergenic
AGTGGAGAGAATCCACCAGA+TGG 0.593721 6_3:-12769501 Msa0940400:CDS
TCCATTGAAGGGTTTCATGA+GGG 0.593890 6_3:-12773427 Msa0940400:CDS
GTTGGGTGACCCATACCAGC+GGG 0.598195 6_3:+12770805 None:intergenic
TGACACTAAGGTAAACAAGA+TGG 0.598361 6_3:-12770209 Msa0940400:CDS
TCGTCAACGTCTATTAGACA+TGG 0.599665 6_3:-12771580 Msa0940400:CDS
TGGGTGCATGTGATTGGTGA+AGG 0.599785 6_3:-12773459 Msa0940400:CDS
AAATGTTTATTACATACTAG+TGG 0.603688 6_3:-12769151 Msa0940400:three_prime_UTR
CCTGCATAATGCATAGGTGA+TGG 0.607380 6_3:+12770901 None:intergenic
GTTGGACCTGCATAATGCAT+AGG 0.607566 6_3:+12770895 None:intergenic
AAGGCATGACCATTATGGAC+CGG 0.612091 6_3:+12771618 None:intergenic
GGTTGGGCTAGTCCATTGAA+GGG 0.615476 6_3:-12773438 Msa0940400:CDS
CAGGATGGAGCAACATAGCA+AGG 0.622612 6_3:-12771484 Msa0940400:intron
AGCTCTTTGATAGAACCAGA+TGG 0.623127 6_3:-12773585 Msa0940400:CDS
TCCAGGATTGCCTTACGTCG+AGG 0.628216 6_3:-12771808 Msa0940400:CDS
TGAAGTTCAATGGCATGCGA+AGG 0.632102 6_3:-12770872 Msa0940400:CDS
GAAAGAATAGCTAGAACCTG+GGG 0.638025 6_3:-12771840 Msa0940400:CDS
AACTTCGTGAAGAATTCGAT+AGG 0.647589 6_3:-12771680 Msa0940400:CDS
AATAAGCCAATTTCCAGCTG+GGG 0.648869 6_3:+12771776 None:intergenic
TCCTCTTGGAGGTTTCACAA+AGG 0.657993 6_3:-12771529 Msa0940400:CDS
TTGTGTGGATGAGAGAAGTG+TGG 0.662064 6_3:+12774019 None:intergenic
ATGTTCGCCATAGTCATAGG+TGG 0.662506 6_3:-12773947 Msa0940400:five_prime_UTR
TATGTCTAAGCAGATAACAC+AGG 0.664654 6_3:+12769402 None:intergenic
GACGTAAGGCAATCCTGGAG+CGG 0.664765 6_3:+12771812 None:intergenic
GGTTGGGTGACCCATACCAG+CGG 0.665716 6_3:+12770804 None:intergenic
CGTCAACGTCTATTAGACAT+GGG 0.666925 6_3:-12771579 Msa0940400:CDS
GGGCACATAAATCCATCTGG+TGG 0.669860 6_3:+12769489 None:intergenic
TGTTCCGTTAGATGTCAGGA+TGG 0.672939 6_3:-12771499 Msa0940400:CDS
GATGGATTTATGTGCCCAAG+TGG 0.673535 6_3:-12769483 Msa0940400:CDS
AGGATTGCCTTACGTCGAGG+AGG 0.684280 6_3:-12771805 Msa0940400:CDS
TTAAACTGTATATCCAAACA+AGG 0.694285 6_3:+12769191 None:intergenic
TTGGGACTGAAAGTGGAGCA+GGG 0.703184 6_3:+12774122 None:intergenic
ACCTTTGTGAAACCTCCAAG+AGG 0.706301 6_3:+12771528 None:intergenic
AGAGAAAGAGAAGAACGTGG+GGG 0.725295 6_3:+12773853 None:intergenic
TCTTTGATAGAACCAGATGG+GGG 0.759790 6_3:-12773582 Msa0940400:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTTTAAATTAATTTTAT+TGG - chr6_3:12770030-12770049 Msa0940400:intron 0.0%
!! AATAAAATTTGATTCTTAAA+AGG + chr6_3:12769004-12769023 None:intergenic 10.0%
!!! AAATTAATTTTATTGGTAAT+TGG - chr6_3:12770037-12770056 Msa0940400:intron 10.0%
!!! ATTCAATTTTTGAATTACAA+TGG - chr6_3:12771195-12771214 Msa0940400:intron 15.0%
!!! TCGTTGTTTTTTTTTTTTTT+TGG - chr6_3:12773616-12773635 Msa0940400:CDS 15.0%
!! TTAAAAGATGCAATTTGTAT+TGG + chr6_3:12769120-12769139 None:intergenic 20.0%
!!! ATTATGTTTTTTTGATTGTG+TGG + chr6_3:12769173-12769192 None:intergenic 20.0%
!! AGAAACTAATTGTAACTTAA+TGG + chr6_3:12769389-12769408 None:intergenic 20.0%
!!! TTTTGATTAATTTGTTTGCA+TGG + chr6_3:12769438-12769457 None:intergenic 20.0%
!!! AAAAACAAAAACAACACTTT+TGG - chr6_3:12769454-12769473 Msa0940400:CDS 20.0%
!!! TAACAAAAGTTGATTTTGAA+TGG - chr6_3:12769695-12769714 Msa0940400:intron 20.0%
!!! AACAAAAGTTGATTTTGAAT+GGG - chr6_3:12769696-12769715 Msa0940400:intron 20.0%
!! AATGGAAAAATTAATCAACT+GGG + chr6_3:12770068-12770087 None:intergenic 20.0%
!!! TTTTTCCATTGTTATTATCA+TGG - chr6_3:12770078-12770097 Msa0940400:intron 20.0%
!! TTAAACCATGATAATAACAA+TGG + chr6_3:12770086-12770105 None:intergenic 20.0%
!!! ACATTTTCTCAATCTATTAT+GGG + chr6_3:12770145-12770164 None:intergenic 20.0%
!!! TACATTTTCTCAATCTATTA+TGG + chr6_3:12770146-12770165 None:intergenic 20.0%
!! AAATTATTTGACATCAATTG+CGG - chr6_3:12770297-12770316 Msa0940400:intron 20.0%
!! AATTCTTTACATAGCAAATT+GGG + chr6_3:12770555-12770574 None:intergenic 20.0%
!! AAATTCTTTACATAGCAAAT+TGG + chr6_3:12770556-12770575 None:intergenic 20.0%
!! AAACTATTCAAATTTCAAAC+TGG - chr6_3:12771082-12771101 Msa0940400:intron 20.0%
!! AAATTGAATGTGTTAACAAA+CGG + chr6_3:12771184-12771203 None:intergenic 20.0%
!! AAATGAATAGATAGATGAAA+AGG + chr6_3:12772014-12772033 None:intergenic 20.0%
!! AAACTTTGTACAAAACAAAT+GGG + chr6_3:12772727-12772746 None:intergenic 20.0%
!!! CAATTTATCAGCAAAATTTT+AGG + chr6_3:12772888-12772907 None:intergenic 20.0%
!!! AAAGATTTTCTCTTTATATC+TGG - chr6_3:12773011-12773030 Msa0940400:intron 20.0%
!! TGTATCATATATTAGTATGT+TGG - chr6_3:12773195-12773214 Msa0940400:intron 20.0%
!! GAACAATATTTAAAAGATAC+TGG - chr6_3:12773307-12773326 Msa0940400:CDS 20.0%
!!! AGTGTCGAATTTAAAAAAAT+TGG - chr6_3:12773474-12773493 Msa0940400:CDS 20.0%
!!! AAAAAATTGGTTTGTTACTT+AGG - chr6_3:12773487-12773506 Msa0940400:CDS 20.0%
!! ATAATGAAATTCGATCTTAA+GGG + chr6_3:12773572-12773591 None:intergenic 20.0%
!! TATAATGAAATTCGATCTTA+AGG + chr6_3:12773573-12773592 None:intergenic 20.0%
!! ATTGTTAAGAGTAAAACTTA+GGG - chr6_3:12773843-12773862 Msa0940400:five_prime_UTR 20.0%
!! AAATGTTTATTACATACTAG+TGG - chr6_3:12774023-12774042 Msa0940400:five_prime_UTR 20.0%
!! AATAAACTGCAAACAATTTA+TGG - chr6_3:12774235-12774254 Msa0940400:five_prime_UTR 20.0%
! GATGCATCAAAATATGAATT+GGG + chr6_3:12769073-12769092 None:intergenic 25.0%
! AGATGCATCAAAATATGAAT+TGG + chr6_3:12769074-12769093 None:intergenic 25.0%
!!! CATATTTTGATGCATCTTTT+TGG - chr6_3:12769077-12769096 Msa0940400:three_prime_UTR 25.0%
! TTAATGGTTAGAGACATTAT+GGG + chr6_3:12769373-12769392 None:intergenic 25.0%
! AATGAATTGTTACCAAAAGT+GGG + chr6_3:12769505-12769524 None:intergenic 25.0%
! TAATGAATTGTTACCAAAAG+TGG + chr6_3:12769506-12769525 None:intergenic 25.0%
!! TTAGATTCTCTTTCATTTTC+AGG + chr6_3:12769640-12769659 None:intergenic 25.0%
! TGAAAATGAAAGAGAATCTA+AGG - chr6_3:12769639-12769658 Msa0940400:intron 25.0%
!!! GTTTGCATTTTAATTCACTT+AGG - chr6_3:12769788-12769807 Msa0940400:intron 25.0%
! TCATCAATAGACAAAACAAT+AGG + chr6_3:12769847-12769866 None:intergenic 25.0%
! ATATTGTTGGTATTCTTAGA+AGG - chr6_3:12769926-12769945 Msa0940400:intron 25.0%
!! GCATTAATTTTGTGGTTAAT+TGG - chr6_3:12769969-12769988 Msa0940400:intron 25.0%
! CAATGGAAAAATTAATCAAC+TGG + chr6_3:12770069-12770088 None:intergenic 25.0%
!! TATCATGGTTTAACATTTTG+TGG - chr6_3:12770093-12770112 Msa0940400:intron 25.0%
! ACTTGTAAATACACTATACA+GGG + chr6_3:12770385-12770404 None:intergenic 25.0%
!!! AGTTAGAAGATAATGGAATA+AGG - chr6_3:12770493-12770512 Msa0940400:intron 25.0%
!!! GTTAGAAGATAATGGAATAA+GGG - chr6_3:12770494-12770513 Msa0940400:intron 25.0%
! ATATAAGGATTGAATATCGT+AGG + chr6_3:12770946-12770965 None:intergenic 25.0%
! TCAAGTTAAAGCAACATATA+AGG + chr6_3:12770961-12770980 None:intergenic 25.0%
! AAACCTATCAAATACAATGA+TGG - chr6_3:12771442-12771461 Msa0940400:intron 25.0%
! TTGAACTAAATAAAGAAACG+CGG + chr6_3:12771815-12771834 None:intergenic 25.0%
!!! TTTTTAGCATCTACTGTTAT+AGG + chr6_3:12771958-12771977 None:intergenic 25.0%
! TGCTAAAAAAAATATGTCCT+TGG - chr6_3:12771969-12771988 Msa0940400:intron 25.0%
!!! AGGTTAATTTTTCAAAGCAT+TGG - chr6_3:12772160-12772179 Msa0940400:intron 25.0%
!! AAATTCGTTTTCTTCTTCAT+AGG - chr6_3:12772200-12772219 Msa0940400:intron 25.0%
! TGATGGAAATATAGAAACTA+TGG + chr6_3:12772259-12772278 None:intergenic 25.0%
!!! TTGCTTTTACACATGAATTT+AGG - chr6_3:12772493-12772512 Msa0940400:intron 25.0%
! AAGAACATATCTCATATTGA+AGG + chr6_3:12772524-12772543 None:intergenic 25.0%
! TTGAATTGGATCTGTTTATT+CGG + chr6_3:12772572-12772591 None:intergenic 25.0%
! TGCTATTATAATCTTTGGAT+CGG - chr6_3:12772637-12772656 Msa0940400:intron 25.0%
!!! TTCAGATTTTATCGATTTTG+AGG + chr6_3:12772674-12772693 None:intergenic 25.0%
! GAAACTTTGTACAAAACAAA+TGG + chr6_3:12772728-12772747 None:intergenic 25.0%
! TAAAGAGAAAATCTTTAGCA+CGG + chr6_3:12773007-12773026 None:intergenic 25.0%
!! CATGACAAAGTTTAGATTTT+TGG + chr6_3:12773089-12773108 None:intergenic 25.0%
! TATATTAGTATGTTGGAACA+TGG - chr6_3:12773202-12773221 Msa0940400:intron 25.0%
! GATTGTTAAGAGTAAAACTT+AGG - chr6_3:12773842-12773861 Msa0940400:five_prime_UTR 25.0%
! TTTCATTTCCTAATGAGTTT+AGG - chr6_3:12773960-12773979 Msa0940400:five_prime_UTR 25.0%
! TTAAACTGTATATCCAAACA+AGG + chr6_3:12773986-12774005 None:intergenic 25.0%
! AAGTTCTTCTACATAACTTA+TGG + chr6_3:12774130-12774149 None:intergenic 25.0%
! AAGTTATGTAGAAGAACTTA+TGG - chr6_3:12774131-12774150 Msa0940400:five_prime_UTR 25.0%
! AGTTATGTAGAAGAACTTAT+GGG - chr6_3:12774132-12774151 Msa0940400:five_prime_UTR 25.0%
! AAGATGCAATTTGTATTGGT+GGG + chr6_3:12769116-12769135 None:intergenic 30.0%
AAAGATGCAATTTGTATTGG+TGG + chr6_3:12769117-12769136 None:intergenic 30.0%
! TTATGGGAAATTGATGGTTA+TGG + chr6_3:12769357-12769376 None:intergenic 30.0%
CTTAATGGTTAGAGACATTA+TGG + chr6_3:12769374-12769393 None:intergenic 30.0%
AAAGTTAAGAGAAGAATGCA+AGG - chr6_3:12769550-12769569 Msa0940400:intron 30.0%
!! ACTTTTGTTAGTTTCACCTT+AGG + chr6_3:12769685-12769704 None:intergenic 30.0%
!! AATTCACTTAGGTTGAATGA+TGG - chr6_3:12769799-12769818 Msa0940400:intron 30.0%
ATTGGATCTTCTTCTAATGT+TGG - chr6_3:12769883-12769902 Msa0940400:intron 30.0%
TTGGATCTTCTTCTAATGTT+GGG - chr6_3:12769884-12769903 Msa0940400:intron 30.0%
!! TCTTTCTGGCATTAATTTTG+TGG - chr6_3:12769961-12769980 Msa0940400:intron 30.0%
CACTTGTAAATACACTATAC+AGG + chr6_3:12770386-12770405 None:intergenic 30.0%
ACTGTCTATTACCTTATGTT+GGG - chr6_3:12770456-12770475 Msa0940400:intron 30.0%
GTGAAAGAGTTAGAAGATAA+TGG - chr6_3:12770486-12770505 Msa0940400:intron 30.0%
TCTTCAATTCAGTGTATGTT+TGG + chr6_3:12770837-12770856 None:intergenic 30.0%
!!! CAATGTTTTAGAAATCGAAC+CGG - chr6_3:12771016-12771035 Msa0940400:intron 30.0%
ATTTAAGTAAACTCCTGTCA+TGG - chr6_3:12771226-12771245 Msa0940400:intron 30.0%
GAAGTTAGATTAATGGTCAT+TGG + chr6_3:12771279-12771298 None:intergenic 30.0%
CTGCAAAGAAGTTAGATTAA+TGG + chr6_3:12771286-12771305 None:intergenic 30.0%
AGACCATCATTGTATTTGAT+AGG + chr6_3:12771448-12771467 None:intergenic 30.0%
AATTCTTCACGAAGTTGTTT+GGG + chr6_3:12771490-12771509 None:intergenic 30.0%
AGAGGATGAAGCAATAAAAT+CGG + chr6_3:12771631-12771650 None:intergenic 30.0%
! ATTTTATTGCTTCATCCTCT+TGG - chr6_3:12771631-12771650 Msa0940400:CDS 30.0%
!!! TTCCATCGTTTTTTCTCATA+TGG - chr6_3:12771717-12771736 Msa0940400:CDS 30.0%
AAAAAATATGTCCTTGGAAG+TGG - chr6_3:12771975-12771994 Msa0940400:intron 30.0%
TGGTTAAACTTCTTTAAACC+AGG + chr6_3:12772111-12772130 None:intergenic 30.0%
CAATTCAAACTGCACTTAAA+CGG - chr6_3:12772584-12772603 Msa0940400:intron 30.0%
AACGTCAATAATAAGAGACA+TGG + chr6_3:12772800-12772819 None:intergenic 30.0%
ACTTTGTGTACTAAAGAACA+AGG + chr6_3:12772839-12772858 None:intergenic 30.0%
!! TTCTGAAACACATTAGTGAA+CGG + chr6_3:12773059-12773078 None:intergenic 30.0%
TAGTTTACAATGACTGATCT+TGG - chr6_3:12773125-12773144 Msa0940400:intron 30.0%
TTAAATTCGACACTGTTAAG+AGG + chr6_3:12773468-12773487 None:intergenic 30.0%
!!! GTGATTTGTTTTTTCAGATG+AGG - chr6_3:12773638-12773657 Msa0940400:CDS 30.0%
ACACTATCTACTAGAACTTA+TGG + chr6_3:12774199-12774218 None:intergenic 30.0%
GTGAGAATATTGGACTGAAA+AGG + chr6_3:12769033-12769052 None:intergenic 35.0%
ATATGAATTGGGACTGAAAG+TGG + chr6_3:12769062-12769081 None:intergenic 35.0%
!! CATCTTTTTGGCACCAATTA+TGG - chr6_3:12769089-12769108 Msa0940400:three_prime_UTR 35.0%
ATAACAACCACCTATGACTA+TGG + chr6_3:12769237-12769256 None:intergenic 35.0%
! GAAATTGATGGTTATGGTGT+TGG + chr6_3:12769351-12769370 None:intergenic 35.0%
GAGACATTATGGGAAATTGA+TGG + chr6_3:12769363-12769382 None:intergenic 35.0%
! TTTCTTCCAAAACCCACTTT+TGG - chr6_3:12769490-12769509 Msa0940400:CDS 35.0%
!! TTGTTACCAAAAGTGGGTTT+TGG + chr6_3:12769499-12769518 None:intergenic 35.0%
GGGTGTATTAGTAGATCTTA+TGG - chr6_3:12769612-12769631 Msa0940400:intron 35.0%
GATGAGACTAAAGAGAGAAT+TGG - chr6_3:12769865-12769884 Msa0940400:intron 35.0%
!! TCTTCTAATGTTGGGTTGAT+CGG - chr6_3:12769892-12769911 Msa0940400:intron 35.0%
ATACCAACAATATCTCCATC+AGG + chr6_3:12769919-12769938 None:intergenic 35.0%
GGTTAGTATAGTCTTCTTTC+TGG - chr6_3:12769947-12769966 Msa0940400:intron 35.0%
ATGACTTCAACCTGAAATGT+CGG - chr6_3:12770224-12770243 Msa0940400:intron 35.0%
GCTATATAGGTCACGATATT+TGG - chr6_3:12770248-12770267 Msa0940400:intron 35.0%
CATTAAAAACCTTGATGTCG+AGG - chr6_3:12770329-12770348 Msa0940400:intron 35.0%
GACTGTCTATTACCTTATGT+TGG - chr6_3:12770455-12770474 Msa0940400:intron 35.0%
TCACAAACATACCCAACATA+AGG + chr6_3:12770470-12770489 None:intergenic 35.0%
GACTTTGTCAACGAATTCAT+AGG - chr6_3:12770648-12770667 Msa0940400:intron 35.0%
! CTTTTATCACCTTCCAATTG+AGG + chr6_3:12770682-12770701 None:intergenic 35.0%
CTCAATTGGAAGGTGATAAA+AGG - chr6_3:12770680-12770699 Msa0940400:intron 35.0%
ACAAAATCACGATATCACCA+TGG + chr6_3:12770744-12770763 None:intergenic 35.0%
TTTGGCAAAAGCTACACTTT+AGG + chr6_3:12770772-12770791 None:intergenic 35.0%
CCATAAGTTAGGCAAAATCA+TGG + chr6_3:12770809-12770828 None:intergenic 35.0%
! CCATGATTTTGCCTAACTTA+TGG - chr6_3:12770806-12770825 Msa0940400:CDS 35.0%
GTTTGGATTGACCATAAGTT+AGG + chr6_3:12770820-12770839 None:intergenic 35.0%
AGCGTTTCGATGAACTATAA+TGG - chr6_3:12770864-12770883 Msa0940400:CDS 35.0%
GAAATTGAACTATGACTCAG+AGG + chr6_3:12771059-12771078 None:intergenic 35.0%
TGAATGTGTTAACAAACGGA+CGG + chr6_3:12771180-12771199 None:intergenic 35.0%
AAGAAAGAATAGCTAGAACC+TGG - chr6_3:12771332-12771351 Msa0940400:intron 35.0%
AGAAAGAATAGCTAGAACCT+GGG - chr6_3:12771333-12771352 Msa0940400:intron 35.0%
! ATGATGGTCTTGATAACTAC+AGG - chr6_3:12771458-12771477 Msa0940400:intron 35.0%
GAATTCTTCACGAAGTTGTT+TGG + chr6_3:12771491-12771510 None:intergenic 35.0%
AACTTCGTGAAGAATTCGAT+AGG - chr6_3:12771494-12771513 Msa0940400:CDS 35.0%
TTAAGAAATCCGGTCCATAA+TGG - chr6_3:12771547-12771566 Msa0940400:CDS 35.0%
TTAACAAGGCATGACCATTA+TGG + chr6_3:12771564-12771583 None:intergenic 35.0%
! ACGAGTATCGTTCATTAACA+AGG + chr6_3:12771578-12771597 None:intergenic 35.0%
CACCATATGAGAAAAAACGA+TGG + chr6_3:12771722-12771741 None:intergenic 35.0%
CTATTTGAGAAGTTCAACTG+TGG - chr6_3:12772079-12772098 Msa0940400:intron 35.0%
AGCAAACAAGCAAGATCTAT+AGG + chr6_3:12772137-12772156 None:intergenic 35.0%
! AGCTTAACATTTTGCCTTTC+AGG - chr6_3:12772460-12772479 Msa0940400:intron 35.0%
! GCTTAACATTTTGCCTTTCA+GGG - chr6_3:12772461-12772480 Msa0940400:intron 35.0%
CGTTTAAGTGCAGTTTGAAT+TGG + chr6_3:12772586-12772605 None:intergenic 35.0%
GATTATAATAGCACGCAGTT+CGG + chr6_3:12772630-12772649 None:intergenic 35.0%
! CTGCGTGCTATTATAATCTT+TGG - chr6_3:12772632-12772651 Msa0940400:intron 35.0%
GGCAGTGTTATGAAGATTAA+GGG + chr6_3:12772706-12772725 None:intergenic 35.0%
TGTTTGCCATTGTACATTAC+AGG - chr6_3:12772932-12772951 Msa0940400:intron 35.0%
TGACACTAAGGTAAACAAGA+TGG - chr6_3:12772965-12772984 Msa0940400:intron 35.0%
! TCTCTTTATATCTGGAACCA+AGG - chr6_3:12773019-12773038 Msa0940400:intron 35.0%
CGGTTGAGAATAAAATACCT+TGG + chr6_3:12773039-12773058 None:intergenic 35.0%
!! AGGTGTCTAACATGTTTTGA+AGG + chr6_3:12773448-12773467 None:intergenic 35.0%
ATGTTCAAGACATGTGTAAC+AGG + chr6_3:12773516-12773535 None:intergenic 35.0%
! ATGAGGTCTTATGCAAAAAG+TGG - chr6_3:12773655-12773674 Msa0940400:CDS 35.0%
TATGTCTAAGCAGATAACAC+AGG + chr6_3:12773775-12773794 None:intergenic 35.0%
GGAAGACCATGCATAAAAAT+TGG + chr6_3:12773873-12773892 None:intergenic 35.0%
CAACATCTCGATCAAGAATT+CGG - chr6_3:12773892-12773911 Msa0940400:five_prime_UTR 35.0%
AAACAAGGCCTAAACTCATT+AGG + chr6_3:12773971-12773990 None:intergenic 35.0%
!! TAATGAGTTTAGGCCTTGTT+TGG - chr6_3:12773970-12773989 Msa0940400:five_prime_UTR 35.0%
! TGTATTGGTGGGACCATAAT+TGG + chr6_3:12769105-12769124 None:intergenic 40.0%
! TGGATTGGATTCACAAGAAG+TGG + chr6_3:12769205-12769224 None:intergenic 40.0%
TATGACTATGGCGAACATGT+TGG + chr6_3:12769225-12769244 None:intergenic 40.0%
AACATGTTCGCCATAGTCAT+AGG - chr6_3:12769224-12769243 Msa0940400:three_prime_UTR 40.0%
AGAGAGAAAGAGAAGAACGT+GGG + chr6_3:12769326-12769345 None:intergenic 40.0%
AGCTCTTTGATAGAACCAGA+TGG - chr6_3:12769589-12769608 Msa0940400:intron 40.0%
GCTCTTTGATAGAACCAGAT+GGG - chr6_3:12769590-12769609 Msa0940400:intron 40.0%
CTCTTTGATAGAACCAGATG+GGG - chr6_3:12769591-12769610 Msa0940400:intron 40.0%
TCTTTGATAGAACCAGATGG+GGG - chr6_3:12769592-12769611 Msa0940400:intron 40.0%
TGAAGCTAAGTCACTACCTA+AGG - chr6_3:12769666-12769685 Msa0940400:intron 40.0%
TTTGAATGGGTGCATGTGAT+TGG - chr6_3:12769709-12769728 Msa0940400:intron 40.0%
TCCATTGAAGGGTTTCATGA+GGG - chr6_3:12769747-12769766 Msa0940400:intron 40.0%
!! CTATATAGCACCGACATTTC+AGG + chr6_3:12770237-12770256 None:intergenic 40.0%
!! CTGAAATGTCGGTGCTATAT+AGG - chr6_3:12770235-12770254 Msa0940400:intron 40.0%
TTTGACATCAATTGCGGTCA+TGG - chr6_3:12770303-12770322 Msa0940400:intron 40.0%
ATAGGTCCAAGAACCTCAAT+TGG - chr6_3:12770666-12770685 Msa0940400:intron 40.0%
CAGTAAGTTTGATGAAGCCA+TGG - chr6_3:12770724-12770743 Msa0940400:CDS 40.0%
! GTGTAGCTTTTGCCAAAATC+AGG - chr6_3:12770775-12770794 Msa0940400:CDS 40.0%
! AGCTTTTGCCAAAATCAGGA+TGG - chr6_3:12770779-12770798 Msa0940400:CDS 40.0%
! ATGGTGTTCCATCCTGATTT+TGG + chr6_3:12770790-12770809 None:intergenic 40.0%
TTATTTGGGTGGTTCAACTG+CGG + chr6_3:12771115-12771134 None:intergenic 40.0%
!! TATCTCCGGTTCGGTTATTT+GGG + chr6_3:12771129-12771148 None:intergenic 40.0%
!! TTATCTCCGGTTCGGTTATT+TGG + chr6_3:12771130-12771149 None:intergenic 40.0%
AACTGAGATTATCTCCGGTT+CGG + chr6_3:12771138-12771157 None:intergenic 40.0%
CCATGAACTGAGATTATCTC+CGG + chr6_3:12771143-12771162 None:intergenic 40.0%
GAAAGAATAGCTAGAACCTG+GGG - chr6_3:12771334-12771353 Msa0940400:intron 40.0%
AATAAGCCAATTTCCAGCTG+GGG + chr6_3:12771401-12771420 None:intergenic 40.0%
CAATAAGCCAATTTCCAGCT+GGG + chr6_3:12771402-12771421 None:intergenic 40.0%
TTGGCTTATTGGAGGAGATT+TGG - chr6_3:12771411-12771430 Msa0940400:intron 40.0%
CGCCTTTCAGTTAAGAAATC+CGG - chr6_3:12771537-12771556 Msa0940400:CDS 40.0%
GACCGGATTTCTTAACTGAA+AGG + chr6_3:12771542-12771561 None:intergenic 40.0%
TCGTCAACGTCTATTAGACA+TGG - chr6_3:12771594-12771613 Msa0940400:CDS 40.0%
CGTCAACGTCTATTAGACAT+GGG - chr6_3:12771595-12771614 Msa0940400:CDS 40.0%
TTATTGCTTCATCCTCTTGG+AGG - chr6_3:12771634-12771653 Msa0940400:CDS 40.0%
ACATCGATGCTATAGAGTGA+AGG - chr6_3:12771766-12771785 Msa0940400:CDS 40.0%
TTACAGTTCATCCACTTCCA+AGG + chr6_3:12771989-12772008 None:intergenic 40.0%
CAAGCAAGATCTATAGGTCA+TGG + chr6_3:12772131-12772150 None:intergenic 40.0%
TCTTCATAGGTCCTAGAAGA+TGG - chr6_3:12772213-12772232 Msa0940400:intron 40.0%
GATCAAGAACTCCATCTTCT+AGG + chr6_3:12772227-12772246 None:intergenic 40.0%
ATAGAAACTATGGTCGTCTC+AGG + chr6_3:12772249-12772268 None:intergenic 40.0%
GGTGCCAACTTCTATATTGT+TGG - chr6_3:12772339-12772358 Msa0940400:intron 40.0%
GCGACCAACAATATAGAAGT+TGG + chr6_3:12772346-12772365 None:intergenic 40.0%
! GTCATACAAGTCCCTTTTCT+CGG + chr6_3:12772394-12772413 None:intergenic 40.0%
TGACCCTGATCATGGAAAAA+AGG - chr6_3:12772410-12772429 Msa0940400:intron 40.0%
GCAATACTACTTACCCTGAA+AGG + chr6_3:12772477-12772496 None:intergenic 40.0%
GGGCAGTGTTATGAAGATTA+AGG + chr6_3:12772707-12772726 None:intergenic 40.0%
CTGCAACCTGTAATGTACAA+TGG + chr6_3:12772941-12772960 None:intergenic 40.0%
GAAAATCTTTAGCACGGCTA+GGG + chr6_3:12773001-12773020 None:intergenic 40.0%
AGAAAATCTTTAGCACGGCT+AGG + chr6_3:12773002-12773021 None:intergenic 40.0%
CAAGAACTTTCCATCCACTT+GGG + chr6_3:12773708-12773727 None:intergenic 40.0%
ACAAGAACTTTCCATCCACT+TGG + chr6_3:12773709-12773728 None:intergenic 40.0%
!! GGAGTGCCAATTTTTATGCA+TGG - chr6_3:12773864-12773883 Msa0940400:five_prime_UTR 40.0%
CGAATTCTTGATCGAGATGT+TGG + chr6_3:12773894-12773913 None:intergenic 40.0%
TTGTGTGGATGAGAGAAGTG+TGG + chr6_3:12769158-12769177 None:intergenic 45.0%
CTATGGCGAACATGTTGGAT+TGG + chr6_3:12769220-12769239 None:intergenic 45.0%
ATGTTCGCCATAGTCATAGG+TGG - chr6_3:12769227-12769246 Msa0940400:three_prime_UTR 45.0%
AGAGAAAGAGAAGAACGTGG+GGG + chr6_3:12769324-12769343 None:intergenic 45.0%
GAGAGAAAGAGAAGAACGTG+GGG + chr6_3:12769325-12769344 None:intergenic 45.0%
GAGAGAGAAAGAGAAGAACG+TGG + chr6_3:12769327-12769346 None:intergenic 45.0%
TCTACTAATACACCCCCATC+TGG + chr6_3:12769607-12769626 None:intergenic 45.0%
TGCATGTGATTGGTGAAGGT+TGG - chr6_3:12769719-12769738 Msa0940400:intron 45.0%
GCATGTGATTGGTGAAGGTT+GGG - chr6_3:12769720-12769739 Msa0940400:intron 45.0%
GTCCATTGAAGGGTTTCATG+AGG - chr6_3:12769746-12769765 Msa0940400:intron 45.0%
TCCCTCATGAAACCCTTCAA+TGG + chr6_3:12769751-12769770 None:intergenic 45.0%
GGACCTGATGGAGATATTGT+TGG - chr6_3:12769913-12769932 Msa0940400:intron 45.0%
CAATTTGAGCCTCGACATCA+AGG + chr6_3:12770341-12770360 None:intergenic 45.0%
GTCCAAGAACCTCAATTGGA+AGG - chr6_3:12770670-12770689 Msa0940400:intron 45.0%
CACCTTCCAATTGAGGTTCT+TGG + chr6_3:12770675-12770694 None:intergenic 45.0%
GGCTGAGTGCATGTTTAGAT+TGG - chr6_3:12770701-12770720 Msa0940400:intron 45.0%
AACCACCCAAATAACCGAAC+CGG - chr6_3:12771121-12771140 Msa0940400:intron 45.0%
CCGGAGATAATCTCAGTTCA+TGG - chr6_3:12771140-12771159 Msa0940400:intron 45.0%
AAACTCCTGTCATGGTGTCT+CGG - chr6_3:12771234-12771253 Msa0940400:intron 45.0%
TCATTACCCCAGCTGGAAAT+TGG - chr6_3:12771392-12771411 Msa0940400:intron 45.0%
CCAATAAGCCAATTTCCAGC+TGG + chr6_3:12771403-12771422 None:intergenic 45.0%
! CCAGCTGGAAATTGGCTTAT+TGG - chr6_3:12771400-12771419 Msa0940400:intron 45.0%
! GCTGGAAATTGGCTTATTGG+AGG - chr6_3:12771403-12771422 Msa0940400:intron 45.0%
AAGGCATGACCATTATGGAC+CGG + chr6_3:12771559-12771578 None:intergenic 45.0%
TCCTCTTGGAGGTTTCACAA+AGG - chr6_3:12771645-12771664 Msa0940400:CDS 45.0%
ACCTTTGTGAAACCTCCAAG+AGG + chr6_3:12771649-12771668 None:intergenic 45.0%
ACGATGTTCCGTTAGATGTC+AGG - chr6_3:12771671-12771690 Msa0940400:CDS 45.0%
TGTTCCGTTAGATGTCAGGA+TGG - chr6_3:12771675-12771694 Msa0940400:CDS 45.0%
TGCTCCATCCTGACATCTAA+CGG + chr6_3:12771682-12771701 None:intergenic 45.0%
GCTATGCAACAGTTCTACAG+CGG + chr6_3:12771864-12771883 None:intergenic 45.0%
!! GATCTTGCTTGTTTGCTGTG+AGG - chr6_3:12772140-12772159 Msa0940400:intron 45.0%
CCTGCATAATGCATAGGTGA+TGG + chr6_3:12772276-12772295 None:intergenic 45.0%
CCATCACCTATGCATTATGC+AGG - chr6_3:12772273-12772292 Msa0940400:intron 45.0%
GTTGGACCTGCATAATGCAT+AGG + chr6_3:12772282-12772301 None:intergenic 45.0%
CAGGTCCAACTGAAGTTCAA+TGG - chr6_3:12772292-12772311 Msa0940400:intron 45.0%
GCATGCCATTGAACTTCAGT+TGG + chr6_3:12772300-12772319 None:intergenic 45.0%
TGAAGTTCAATGGCATGCGA+AGG - chr6_3:12772302-12772321 Msa0940400:intron 45.0%
! ACAAGTCCCTTTTCTCGGTT+GGG + chr6_3:12772389-12772408 None:intergenic 45.0%
! TACAAGTCCCTTTTCTCGGT+TGG + chr6_3:12772390-12772409 None:intergenic 45.0%
GACTTGTATGACCCTGATCA+TGG - chr6_3:12772402-12772421 Msa0940400:intron 45.0%
ATGTTAAGCTTCTCGAGACC+AGG + chr6_3:12772450-12772469 None:intergenic 45.0%
TAATAGCACGCAGTTCGGAT+TGG + chr6_3:12772625-12772644 None:intergenic 45.0%
GGTTGCAGCTTATGACACTA+AGG - chr6_3:12772953-12772972 Msa0940400:intron 45.0%
CTGATCTTGGTTCCTACATC+TGG - chr6_3:12773138-12773157 Msa0940400:intron 45.0%
GCTGTGATAAAGCCAGATGT+AGG + chr6_3:12773153-12773172 None:intergenic 45.0%
ACGCAGAAACAACACTTTGG+AGG + chr6_3:12773387-12773406 None:intergenic 45.0%
GACACGCAGAAACAACACTT+TGG + chr6_3:12773390-12773409 None:intergenic 45.0%
TCTGCGTGTCAGACACATTT+CGG - chr6_3:12773400-12773419 Msa0940400:CDS 45.0%
! AAGGTGTGTCTGAGAAGTGT+CGG + chr6_3:12773429-12773448 None:intergenic 45.0%
TTGAACATGCACCAAGAGAC+TGG - chr6_3:12773528-12773547 Msa0940400:CDS 45.0%
TGAACATGCACCAAGAGACT+GGG - chr6_3:12773529-12773548 Msa0940400:CDS 45.0%
CTTGGGCACATAAATCCATC+TGG + chr6_3:12773691-12773710 None:intergenic 45.0%
! GATGGATTTATGTGCCCAAG+TGG - chr6_3:12773691-12773710 Msa0940400:CDS 45.0%
GATTTATGTGCCCAAGTGGA+TGG - chr6_3:12773695-12773714 Msa0940400:CDS 45.0%
GTGGAGCAGGGTGAGAATAT+TGG + chr6_3:12769043-12769062 None:intergenic 50.0%
TTGGGACTGAAAGTGGAGCA+GGG + chr6_3:12769055-12769074 None:intergenic 50.0%
ATTGGGACTGAAAGTGGAGC+AGG + chr6_3:12769056-12769075 None:intergenic 50.0%
TGGGTGCATGTGATTGGTGA+AGG - chr6_3:12769715-12769734 Msa0940400:intron 50.0%
!! AGGTTGGGCTAGTCCATTGA+AGG - chr6_3:12769735-12769754 Msa0940400:intron 50.0%
!! GGTTGGGCTAGTCCATTGAA+GGG - chr6_3:12769736-12769755 Msa0940400:intron 50.0%
GGTCTCGTCAGTTTGATGTC+CGG + chr6_3:12771038-12771057 None:intergenic 50.0%
AAACTCCGAGACACCATGAC+AGG + chr6_3:12771242-12771261 None:intergenic 50.0%
GTAATGACCTCCTCGACGTA+AGG + chr6_3:12771379-12771398 None:intergenic 50.0%
CAGGATGGAGCAACATAGCA+AGG - chr6_3:12771690-12771709 Msa0940400:CDS 50.0%
GTTCAACTGTGGTTTCGTCC+TGG - chr6_3:12772090-12772109 Msa0940400:intron 50.0%
TTCAATGGCATGCGAAGGCA+CGG - chr6_3:12772307-12772326 Msa0940400:intron 50.0%
AGTGGAGAGAATCCACCAGA+TGG - chr6_3:12773673-12773692 Msa0940400:CDS 50.0%
GGGCACATAAATCCATCTGG+TGG + chr6_3:12773688-12773707 None:intergenic 50.0%
!! GTTGGGTTGATCGGACCTGA+TGG - chr6_3:12769901-12769920 Msa0940400:intron 55.0%
!! CTCCGGTTCGGTTATTTGGG+TGG + chr6_3:12771126-12771145 None:intergenic 55.0%
GACGTAAGGCAATCCTGGAG+CGG + chr6_3:12771365-12771384 None:intergenic 55.0%
TCCAGGATTGCCTTACGTCG+AGG - chr6_3:12771366-12771385 Msa0940400:intron 55.0%
TCCTCGACGTAAGGCAATCC+TGG + chr6_3:12771370-12771389 None:intergenic 55.0%
AGGATTGCCTTACGTCGAGG+AGG - chr6_3:12771369-12771388 Msa0940400:intron 55.0%
!! GCGCTATTTTCCGCGATCTG+CGG - chr6_3:12771900-12771919 Msa0940400:intron 55.0%
! GCGAAGGCACGGATAAATGC+AGG - chr6_3:12772318-12772337 Msa0940400:intron 55.0%
TGGGTCACCCAACCGAGAAA+AGG - chr6_3:12772379-12772398 Msa0940400:intron 55.0%
GGGTCACCCAACCGAGAAAA+GGG - chr6_3:12772380-12772399 Msa0940400:intron 55.0%
!! TGGAGGTGTCTGTGCTTCTG+AGG + chr6_3:12773370-12773389 None:intergenic 55.0%
GAGGAGGTCATTACCCCAGC+TGG - chr6_3:12771385-12771404 Msa0940400:intron 60.0%
CTGCTGTCAACCGCAGATCG+CGG + chr6_3:12771913-12771932 None:intergenic 60.0%
CGATCTGCGGTTGACAGCAG+TGG - chr6_3:12771913-12771932 Msa0940400:intron 60.0%
ATTGTTGGTCGCGATCCCGC+TGG - chr6_3:12772354-12772373 Msa0940400:intron 60.0%
GTTGGGTGACCCATACCAGC+GGG + chr6_3:12772372-12772391 None:intergenic 60.0%
GGTTGGGTGACCCATACCAG+CGG + chr6_3:12772373-12772392 None:intergenic 60.0%
TAAGGGCCCTGACCAGGTGT+CGG + chr6_3:12773555-12773574 None:intergenic 60.0%
CGATCTTAAGGGCCCTGACC+AGG + chr6_3:12773561-12773580 None:intergenic 60.0%
ACCTGGGGAACAACCGCTCC+AGG - chr6_3:12771349-12771368 Msa0940400:intron 65.0%
TCCTGGAGCGGTTGTTCCCC+AGG + chr6_3:12771353-12771372 None:intergenic 65.0%
TGGTCGCGATCCCGCTGGTA+TGG - chr6_3:12772359-12772378 Msa0940400:intron 65.0%
GGTCGCGATCCCGCTGGTAT+GGG - chr6_3:12772360-12772379 Msa0940400:intron 65.0%
!! CAGGTGTCGGCCCAGTCTCT+TGG + chr6_3:12773542-12773561 None:intergenic 65.0%
CAAGAGACTGGGCCGACACC+TGG - chr6_3:12773540-12773559 Msa0940400:CDS 65.0%
ACTGGGCCGACACCTGGTCA+GGG - chr6_3:12773546-12773565 Msa0940400:CDS 65.0%
GACTGGGCCGACACCTGGTC+AGG - chr6_3:12773545-12773564 Msa0940400:CDS 70.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 12768934 12774262 12768934 ID=Msa0940400;Name=Msa0940400
chr6_3 mRNA 12768934 12774262 12768934 ID=Msa0940400-mRNA-1;Parent=Msa0940400;Name=Msa0940400-mRNA-1;_AED=0.02;_eAED=0.02;_QI=442|1|1|1|1|1|5|473|486
chr6_3 exon 12768934 12769541 12768934 ID=Msa0940400-mRNA-1:exon:4173;Parent=Msa0940400-mRNA-1
chr6_3 exon 12770156 12770242 12770156 ID=Msa0940400-mRNA-1:exon:4172;Parent=Msa0940400-mRNA-1
chr6_3 exon 12770714 12770974 12770714 ID=Msa0940400-mRNA-1:exon:4171;Parent=Msa0940400-mRNA-1
chr6_3 exon 12771485 12771890 12771485 ID=Msa0940400-mRNA-1:exon:4170;Parent=Msa0940400-mRNA-1
chr6_3 exon 12773249 12774262 12773249 ID=Msa0940400-mRNA-1:exon:4169;Parent=Msa0940400-mRNA-1
chr6_3 five_prime_UTR 12773821 12774262 12773821 ID=Msa0940400-mRNA-1:five_prime_utr;Parent=Msa0940400-mRNA-1
chr6_3 CDS 12773249 12773820 12773249 ID=Msa0940400-mRNA-1:cds;Parent=Msa0940400-mRNA-1
chr6_3 CDS 12771485 12771890 12771485 ID=Msa0940400-mRNA-1:cds;Parent=Msa0940400-mRNA-1
chr6_3 CDS 12770714 12770974 12770714 ID=Msa0940400-mRNA-1:cds;Parent=Msa0940400-mRNA-1
chr6_3 CDS 12770156 12770242 12770156 ID=Msa0940400-mRNA-1:cds;Parent=Msa0940400-mRNA-1
chr6_3 CDS 12769407 12769541 12769407 ID=Msa0940400-mRNA-1:cds;Parent=Msa0940400-mRNA-1
chr6_3 three_prime_UTR 12768934 12769406 12768934 ID=Msa0940400-mRNA-1:three_prime_utr;Parent=Msa0940400-mRNA-1
Gene Sequence

>Msa0940400

ATGTCTCTAACCATTAAGTTACAATTAGTTTCTCATCTTAACATCAATCACAACAAAAACCATGCAAACAAATTAATCAAAAACAAAAACAACACTTTTGGTAACACTTTAAAGTTTCTTCCAAAACCCACTTTTGGTAACAATTCATTAACTGTTACTAAAAAGTATCATAATAAAGTTAAGAGAAGAATGCAAGGAAATTTCATGATCAAAAGCTCTTTGATAGAACCAGATGGGGGTGTATTAGTAGATCTTATGGTGCCTGAAAATGAAAGAGAATCTAAGGTACTTGAAGCTAAGTCACTACCTAAGGTGAAACTAACAAAAGTTGATTTTGAATGGGTGCATGTGATTGGTGAAGGTTGGGCTAGTCCATTGAAGGGTTTCATGAGGGAAAATGAATATCTTCAAAGTTTGCATTTTAATTCACTTAGGTTGAATGATGGTTCTTTTGTTAATATGTCACTTCCTATTGTTTTGTCTATTGATGATGAGACTAAAGAGAGAATTGGATCTTCTTCTAATGTTGGGTTGATCGGACCTGATGGAGATATTGTTGGTATTCTTAGAAGCATTGAAATCTACAAGCATAACAAAGAAGAAAGAATAGCTAGAACCTGGGGAACAACCGCTCCAGGATTGCCTTACGTCGAGGAGGTCATTACCCCAGCTGGAAATTGGCTTATTGGAGGAGATTTGGAAGTGCTAAAACCTATCAAATACAATGATGGTCTTGATAACTACAGGCTCTCTCCCAAACAACTTCGTGAAGAATTCGATAGGCGTAAAGCTGATGCAGTTTTCGCCTTTCAGTTAAGAAATCCGGTCCATAATGGTCATGCCTTGTTAATGAACGATACTCGTCAACGTCTATTAGACATGGGTTACAAAAATCCGATTTTATTGCTTCATCCTCTTGGAGGTTTCACAAAGGTTGACGATGTTCCGTTAGATGTCAGGATGGAGCAACATAGCAAGGTCCTAGAAGATGGAGTTCTTGATCCTGAGACGACCATAGTTTCTATATTTCCATCACCTATGCATTATGCAGGTCCAACTGAAGTTCAATGGCATGCGAAGGCACGGATAAATGCAGGTGCCAACTTCTATATTGTTGGTCGCGATCCCGCTGGTATGGGTCACCCAACCGAGAAAAGGGACTTGTATGACCCTGATCATGGAAAAAAGGTGCTTAGCATGGCTCCTGGTCTCGAGAAGCTTAACATTTTGCCTTTCAGGGTTGCAGCTTATGACACTAAGGTAAACAAGATGGCATTTTTCGACCCTAGCCGTGCTAAAGATTTTCTCTTTATATCTGGAACCAAGATGAGGTCTTATGCAAAAAGTGGAGAGAATCCACCAGATGGATTTATGTGCCCAAGTGGATGGAAAGTTCTTGTCAATTATTATGAAAGTTTGCAGACAGAAGAAGCATCACAACAGCCTGTGTTATCTGCTTAG

Protein sequence

>Msa0940400

MSLTIKLQLVSHLNINHNKNHANKLIKNKNNTFGNTLKFLPKPTFGNNSLTVTKKYHNKVKRRMQGNFMIKSSLIEPDGGVLVDLMVPENERESKVLEAKSLPKVKLTKVDFEWVHVIGEGWASPLKGFMRENEYLQSLHFNSLRLNDGSFVNMSLPIVLSIDDETKERIGSSSNVGLIGPDGDIVGILRSIEIYKHNKEERIARTWGTTAPGLPYVEEVITPAGNWLIGGDLEVLKPIKYNDGLDNYRLSPKQLREEFDRRKADAVFAFQLRNPVHNGHALLMNDTRQRLLDMGYKNPILLLHPLGGFTKVDDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMAPGLEKLNILPFRVAAYDTKVNKMAFFDPSRAKDFLFISGTKMRSYAKSGENPPDGFMCPSGWKVLVNYYESLQTEEASQQPVLSA*