Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012160.t1 | XP_003629211.1 | 95.2 | 397 | 19 | 0 | 1 | 397 | 1 | 397 | 5.20E-230 | 806.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012160.t1 | Q3EBZ2 | 30.4 | 405 | 235 | 13 | 23 | 395 | 1 | 390 | 9.4e-39 | 162.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012160.t1 | G7LA96 | 95.2 | 397 | 19 | 0 | 1 | 397 | 1 | 397 | 3.7e-230 | 806.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene97013 | MS.gene012160 | PPI |
| MS.gene012160 | MS.gene017582 | PPI |
| MS.gene66307 | MS.gene012160 | PPI |
| MS.gene012160 | MS.gene064059 | PPI |
| MS.gene012159 | MS.gene012160 | PPI |
| MS.gene012160 | MS.gene025209 | PPI |
| MS.gene64423 | MS.gene012160 | PPI |
| MS.gene012160 | MS.gene39445 | PPI |
| MS.gene012160 | MS.gene08770 | PPI |
| MS.gene037197 | MS.gene012160 | PPI |
| MS.gene30094 | MS.gene012160 | PPI |
| MS.gene91760 | MS.gene012160 | PPI |
| MS.gene012160 | MS.gene66307 | PPI |
| MS.gene012160 | MS.gene023531 | PPI |
| MS.gene28903 | MS.gene012160 | PPI |
| MS.gene23497 | MS.gene012160 | PPI |
| MS.gene012160 | MS.gene018718 | PPI |
| MS.gene28904 | MS.gene012160 | PPI |
| MS.gene012160 | MS.gene017581 | PPI |
| MS.gene44191 | MS.gene012160 | PPI |
| MS.gene44190 | MS.gene012160 | PPI |
| MS.gene049886 | MS.gene012160 | PPI |
| MS.gene23495 | MS.gene012160 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012160.t1 | MTR_8g074610 | 95.214 | 397 | 19 | 0 | 1 | 397 | 1 | 397 | 0.0 | 768 |
| MS.gene012160.t1 | MTR_2g041510 | 76.500 | 400 | 83 | 5 | 1 | 397 | 1 | 392 | 0.0 | 595 |
| MS.gene012160.t1 | MTR_2g041510 | 76.053 | 380 | 81 | 4 | 20 | 397 | 1 | 372 | 0.0 | 585 |
| MS.gene012160.t1 | MTR_8g074640 | 74.142 | 379 | 95 | 3 | 20 | 397 | 1 | 377 | 0.0 | 581 |
| MS.gene012160.t1 | MTR_8g085760 | 33.162 | 389 | 212 | 12 | 21 | 383 | 9 | 375 | 2.11e-51 | 177 |
| MS.gene012160.t1 | MTR_6g092570 | 33.600 | 375 | 202 | 10 | 21 | 383 | 4 | 343 | 1.54e-49 | 171 |
| MS.gene012160.t1 | MTR_5g079830 | 34.181 | 354 | 184 | 10 | 20 | 359 | 1 | 319 | 5.58e-49 | 171 |
| MS.gene012160.t1 | MTR_4g088925 | 34.048 | 373 | 190 | 12 | 33 | 383 | 34 | 372 | 1.65e-46 | 164 |
| MS.gene012160.t1 | MTR_7g096720 | 34.153 | 366 | 192 | 14 | 20 | 359 | 6 | 348 | 1.65e-46 | 164 |
| MS.gene012160.t1 | MTR_3g030050 | 31.163 | 430 | 227 | 15 | 16 | 395 | 10 | 420 | 1.69e-43 | 157 |
| MS.gene012160.t1 | MTR_2g047180 | 29.948 | 384 | 236 | 12 | 24 | 395 | 3 | 365 | 1.64e-33 | 129 |
| MS.gene012160.t1 | MTR_1g016570 | 27.708 | 397 | 220 | 12 | 16 | 395 | 13 | 359 | 3.90e-32 | 125 |
| MS.gene012160.t1 | MTR_6g018390 | 29.609 | 358 | 194 | 14 | 23 | 359 | 3 | 323 | 7.70e-31 | 121 |
| MS.gene012160.t1 | MTR_1g026850 | 29.750 | 400 | 220 | 16 | 20 | 395 | 1 | 363 | 1.75e-30 | 120 |
| MS.gene012160.t1 | MTR_1g007260 | 28.760 | 379 | 211 | 13 | 24 | 375 | 21 | 367 | 6.66e-30 | 119 |
| MS.gene012160.t1 | MTR_6g027100 | 28.049 | 410 | 221 | 16 | 24 | 396 | 4 | 376 | 3.07e-29 | 118 |
| MS.gene012160.t1 | MTR_3g029650 | 28.291 | 357 | 189 | 11 | 24 | 359 | 4 | 314 | 7.36e-29 | 119 |
| MS.gene012160.t1 | MTR_3g029650 | 26.087 | 391 | 239 | 12 | 16 | 376 | 364 | 734 | 7.38e-24 | 104 |
| MS.gene012160.t1 | MTR_3g058460 | 29.487 | 390 | 227 | 15 | 25 | 395 | 15 | 375 | 4.87e-28 | 114 |
| MS.gene012160.t1 | MTR_6g027040 | 27.792 | 403 | 233 | 17 | 24 | 397 | 4 | 377 | 4.91e-28 | 114 |
| MS.gene012160.t1 | MTR_3g030360 | 27.778 | 396 | 217 | 15 | 22 | 395 | 2 | 350 | 7.24e-28 | 113 |
| MS.gene012160.t1 | MTR_6g018360 | 27.568 | 370 | 218 | 12 | 24 | 374 | 4 | 342 | 9.18e-26 | 108 |
| MS.gene012160.t1 | MTR_3g030080 | 26.796 | 362 | 198 | 12 | 25 | 361 | 7 | 326 | 4.29e-25 | 105 |
| MS.gene012160.t1 | MTR_1g049170 | 25.352 | 426 | 225 | 15 | 20 | 395 | 1 | 383 | 4.73e-25 | 105 |
| MS.gene012160.t1 | MTR_3g030380 | 27.005 | 374 | 218 | 12 | 24 | 379 | 4 | 340 | 7.45e-25 | 104 |
| MS.gene012160.t1 | MTR_3g029620 | 27.225 | 382 | 221 | 14 | 23 | 381 | 1 | 348 | 1.06e-24 | 104 |
| MS.gene012160.t1 | MTR_3g030480 | 26.260 | 377 | 215 | 14 | 24 | 379 | 4 | 338 | 1.85e-23 | 100 |
| MS.gene012160.t1 | MTR_3g029640 | 26.893 | 383 | 209 | 15 | 24 | 381 | 3 | 339 | 2.35e-23 | 100 |
| MS.gene012160.t1 | MTR_3g037710 | 31.418 | 261 | 129 | 8 | 140 | 376 | 9 | 243 | 2.53e-23 | 99.0 |
| MS.gene012160.t1 | MTR_4g125090 | 26.786 | 336 | 167 | 11 | 21 | 340 | 41 | 313 | 1.19e-22 | 97.8 |
| MS.gene012160.t1 | MTR_3g030355 | 27.361 | 413 | 218 | 17 | 20 | 382 | 1 | 381 | 1.28e-22 | 99.0 |
| MS.gene012160.t1 | MTR_3g091990 | 27.348 | 362 | 210 | 13 | 24 | 359 | 6 | 340 | 1.33e-22 | 99.0 |
| MS.gene012160.t1 | MTR_3g114990 | 27.451 | 357 | 222 | 12 | 24 | 363 | 22 | 358 | 2.10e-22 | 98.6 |
| MS.gene012160.t1 | MTR_3g030440 | 25.722 | 381 | 220 | 14 | 20 | 379 | 1 | 339 | 4.37e-22 | 97.1 |
| MS.gene012160.t1 | MTR_6g018400 | 26.536 | 358 | 202 | 10 | 22 | 357 | 2 | 320 | 6.03e-22 | 96.7 |
| MS.gene012160.t1 | MTR_3g029920 | 28.392 | 398 | 217 | 15 | 24 | 394 | 8 | 364 | 1.76e-21 | 95.5 |
| MS.gene012160.t1 | MTR_3g029840 | 26.316 | 361 | 196 | 15 | 25 | 361 | 5 | 319 | 2.07e-21 | 94.7 |
| MS.gene012160.t1 | MTR_3g029670 | 26.750 | 400 | 222 | 13 | 24 | 382 | 4 | 373 | 2.12e-21 | 95.1 |
| MS.gene012160.t1 | MTR_6g018315 | 25.888 | 394 | 229 | 14 | 37 | 396 | 2 | 366 | 6.23e-21 | 94.0 |
| MS.gene012160.t1 | MTR_3g029950 | 27.273 | 374 | 185 | 15 | 25 | 365 | 5 | 324 | 3.02e-20 | 91.7 |
| MS.gene012160.t1 | MTR_3g092000 | 25.862 | 406 | 214 | 17 | 24 | 381 | 6 | 372 | 3.64e-20 | 92.0 |
| MS.gene012160.t1 | MTR_3g114970 | 25.840 | 387 | 209 | 16 | 24 | 382 | 3 | 339 | 3.86e-20 | 91.3 |
| MS.gene012160.t1 | MTR_3g030560 | 26.716 | 408 | 225 | 19 | 24 | 395 | 3 | 372 | 1.33e-19 | 90.1 |
| MS.gene012160.t1 | MTR_3g029750 | 25.065 | 383 | 217 | 12 | 24 | 370 | 4 | 352 | 2.18e-18 | 86.7 |
| MS.gene012160.t1 | MTR_3g047980 | 28.191 | 376 | 219 | 14 | 25 | 395 | 30 | 359 | 2.25e-17 | 83.2 |
| MS.gene012160.t1 | MTR_3g029900 | 30.636 | 173 | 84 | 5 | 218 | 387 | 297 | 436 | 1.61e-14 | 75.5 |
| MS.gene012160.t1 | MTR_1g016540 | 29.947 | 187 | 101 | 6 | 227 | 395 | 4 | 178 | 9.68e-13 | 66.6 |
| MS.gene012160.t1 | MTR_1g007250 | 33.333 | 144 | 79 | 4 | 227 | 367 | 4 | 133 | 1.53e-11 | 62.8 |
| MS.gene012160.t1 | MTR_5g042230 | 32.895 | 152 | 88 | 5 | 210 | 359 | 13 | 152 | 1.94e-11 | 63.5 |
| MS.gene012160.t1 | MTR_6g018370 | 34.109 | 129 | 75 | 4 | 210 | 337 | 132 | 251 | 4.41e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012160.t1 | AT2G17030 | 30.370 | 405 | 235 | 13 | 23 | 395 | 1 | 390 | 2.92e-43 | 155 |
| MS.gene012160.t1 | AT2G17036 | 28.186 | 408 | 234 | 15 | 23 | 395 | 1 | 384 | 1.68e-36 | 137 |
| MS.gene012160.t1 | AT2G17036 | 28.256 | 407 | 233 | 15 | 24 | 395 | 1 | 383 | 3.01e-36 | 137 |
| MS.gene012160.t1 | AT1G65770 | 29.041 | 365 | 213 | 11 | 23 | 372 | 1 | 334 | 1.05e-34 | 132 |
| MS.gene012160.t1 | AT4G35733 | 29.563 | 389 | 211 | 16 | 20 | 384 | 1 | 350 | 9.29e-34 | 129 |
| MS.gene012160.t1 | AT1G44080 | 28.261 | 368 | 211 | 13 | 24 | 381 | 4 | 328 | 2.89e-29 | 116 |
| MS.gene012160.t1 | AT2G26160 | 30.769 | 351 | 194 | 15 | 25 | 361 | 5 | 320 | 8.18e-29 | 115 |
| MS.gene012160.t1 | AT3G25750 | 27.467 | 375 | 217 | 12 | 22 | 376 | 2 | 341 | 1.19e-26 | 109 |
| MS.gene012160.t1 | AT3G25750 | 27.346 | 373 | 206 | 12 | 22 | 376 | 2 | 327 | 5.54e-25 | 105 |
| MS.gene012160.t1 | AT2G17690 | 28.436 | 422 | 217 | 15 | 25 | 379 | 3 | 406 | 1.89e-24 | 104 |
| MS.gene012160.t1 | AT1G65740 | 27.926 | 376 | 215 | 14 | 23 | 372 | 1 | 346 | 1.73e-23 | 101 |
| MS.gene012160.t1 | AT1G65760 | 28.142 | 366 | 211 | 14 | 25 | 372 | 5 | 336 | 3.51e-23 | 100 |
| MS.gene012160.t1 | AT2G16290 | 26.733 | 404 | 233 | 17 | 23 | 383 | 1 | 384 | 7.24e-20 | 91.3 |
| MS.gene012160.t1 | AT5G24040 | 23.450 | 371 | 211 | 13 | 23 | 363 | 1 | 328 | 1.57e-14 | 74.7 |
| MS.gene012160.t1 | AT1G64840 | 24.370 | 357 | 217 | 13 | 25 | 361 | 4 | 327 | 4.11e-13 | 70.9 |
| MS.gene012160.t1 | AT2G16300 | 23.780 | 328 | 204 | 13 | 23 | 322 | 1 | 310 | 9.67e-11 | 63.2 |
Find 71 sgRNAs with CRISPR-Local
Find 79 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATGTTCGTATGTATAATT+TGG | 0.212475 | 8.4:+30183527 | MS.gene012160:CDS |
| AAGGGAACTGCATCTACTTT+AGG | 0.247416 | 8.4:+30183496 | MS.gene012160:CDS |
| ATCTTTCAAGAGGGTAAATT+AGG | 0.264749 | 8.4:+30183042 | MS.gene012160:CDS |
| GTCTCAACTAAAGACTTAAT+TGG | 0.265830 | 8.4:+30183468 | MS.gene012160:CDS |
| TGGATGAAGAATGGGGAAAA+TGG | 0.270862 | 8.4:+30183385 | MS.gene012160:CDS |
| TTCCAAAGGTTGGCTGATTA+AGG | 0.291497 | 8.4:+30182777 | MS.gene012160:CDS |
| TCACCTCCTTTGTGTGGTCT+TGG | 0.328023 | 8.4:+30183219 | MS.gene012160:CDS |
| AATGGAAAAGAAGGAGAGTT+TGG | 0.332443 | 8.4:-30182634 | None:intergenic |
| AGGTGCTAAAGGTTCTAAAT+TGG | 0.350268 | 8.4:-30182749 | None:intergenic |
| TATGGAACTTGTTGGATCAT+AGG | 0.360148 | 8.4:+30182896 | MS.gene012160:CDS |
| ATAGGACTCAACAAACTTAC+AGG | 0.370665 | 8.4:-30182820 | None:intergenic |
| ACAGTAGTCCAAGGAGAGTT+AGG | 0.371051 | 8.4:-30182997 | None:intergenic |
| ATAAATGGGGAACTATTTCA+TGG | 0.373052 | 8.4:+30183163 | MS.gene012160:CDS |
| AGGGAACTGCATCTACTTTA+GGG | 0.379511 | 8.4:+30183497 | MS.gene012160:CDS |
| GAAGGAGAGTTTGGATGAGA+TGG | 0.382409 | 8.4:-30182625 | None:intergenic |
| CTCAACTTCCTATAGAACTA+TGG | 0.385206 | 8.4:+30182518 | MS.gene012160:CDS |
| CAATGATATAAACGGTTGAT+TGG | 0.387856 | 8.4:-30182702 | None:intergenic |
| TTATAAGTTGGATGAAGAAT+GGG | 0.394790 | 8.4:+30183377 | MS.gene012160:CDS |
| TACCTTAATCAGCCAACCTT+TGG | 0.397147 | 8.4:-30182779 | None:intergenic |
| TTTATAAGTTGGATGAAGAA+TGG | 0.397683 | 8.4:+30183376 | MS.gene012160:CDS |
| CACCTTCTTCTTCCAAAGGT+TGG | 0.399560 | 8.4:+30182767 | MS.gene012160:CDS |
| AAAGACTTAATTGGATATCA+AGG | 0.406036 | 8.4:+30183477 | MS.gene012160:CDS |
| GGATGATCATAGAATCACTA+TGG | 0.406868 | 8.4:+30183548 | MS.gene012160:CDS |
| TGTTCTATCCTAACTCTCCT+TGG | 0.421475 | 8.4:+30182989 | MS.gene012160:CDS |
| TGGAAACAAGAAGCATTTGA+TGG | 0.422063 | 8.4:+30183239 | MS.gene012160:CDS |
| ATCTTAGGCCATAGTTCTAT+AGG | 0.430698 | 8.4:-30182526 | None:intergenic |
| AGTTGGTTCAATGATATAAA+CGG | 0.439030 | 8.4:-30182710 | None:intergenic |
| TACCATGCTATGGAACTTGT+TGG | 0.443560 | 8.4:+30182888 | MS.gene012160:CDS |
| ATCTGATTCTTCTTCATCCA+TGG | 0.450631 | 8.4:+30182477 | MS.gene012160:CDS |
| TGACGATGTTATTGTGTTCA+AGG | 0.452162 | 8.4:+30183122 | MS.gene012160:CDS |
| ATAGAACTATGGCCTAAGAT+AGG | 0.452927 | 8.4:+30182529 | MS.gene012160:CDS |
| TTGTTTAGCGAGTCGTAGAC+AGG | 0.454181 | 8.4:-30182670 | None:intergenic |
| CTTGTATTGACAAGACTTTG+TGG | 0.456773 | 8.4:+30183583 | MS.gene012160:CDS |
| ATGTTTCAAAGTTTATAAGT+TGG | 0.473392 | 8.4:+30183365 | MS.gene012160:CDS |
| GGATGAAGAATGGGGAAAAT+GGG | 0.473828 | 8.4:+30183386 | MS.gene012160:CDS |
| GGAGAGTTTGGATGAGATGG+AGG | 0.480906 | 8.4:-30182622 | None:intergenic |
| CTTTGTGGTCTCGTTCACCT+TGG | 0.488154 | 8.4:+30183598 | MS.gene012160:CDS |
| ATGGAACTTGTTGGATCATA+GGG | 0.493145 | 8.4:+30182897 | MS.gene012160:CDS |
| TTGGAAGAAGAAGGTGCTAA+AGG | 0.501406 | 8.4:-30182760 | None:intergenic |
| ACAGGGTGAGGTATTTGTAA+TGG | 0.505888 | 8.4:-30182652 | None:intergenic |
| CACAAAGTCTTGTCAATACA+AGG | 0.513043 | 8.4:-30183582 | None:intergenic |
| GGTATTTGTAATGGAAAAGA+AGG | 0.516150 | 8.4:-30182643 | None:intergenic |
| TAAAGGTTCTAAATTGGAGT+TGG | 0.521984 | 8.4:-30182743 | None:intergenic |
| GAAGTGTTGTTACTGCTAAG+AGG | 0.538395 | 8.4:-30182865 | None:intergenic |
| GTTTGGATGAGATGGAGGAA+TGG | 0.540037 | 8.4:-30182617 | None:intergenic |
| CTATGAAAGTAGTGAAGACA+TGG | 0.542033 | 8.4:+30183296 | MS.gene012160:CDS |
| CTCTCCTTGGACTACTGTTG+AGG | 0.542828 | 8.4:+30183002 | MS.gene012160:CDS |
| CCAATCAACTATCTCATCCA+TGG | 0.548037 | 8.4:-30182494 | None:intergenic |
| CCATGGATGAGATAGTTGAT+TGG | 0.548664 | 8.4:+30182494 | MS.gene012160:CDS |
| ACAACACTTCTACCATGCTA+TGG | 0.549319 | 8.4:+30182878 | MS.gene012160:CDS |
| TTAGCACCTTCTTCTTCCAA+AGG | 0.559083 | 8.4:+30182763 | MS.gene012160:CDS |
| AGCCAACCTTTGGAAGAAGA+AGG | 0.565959 | 8.4:-30182769 | None:intergenic |
| ATCCAACAAGTTCCATAGCA+TGG | 0.567906 | 8.4:-30182890 | None:intergenic |
| GACGATGTTATTGTGTTCAA+GGG | 0.569592 | 8.4:+30183123 | MS.gene012160:CDS |
| AAGTGTTGTTACTGCTAAGA+GGG | 0.570047 | 8.4:-30182864 | None:intergenic |
| AGCGAGTCGTAGACAGGGTG+AGG | 0.572671 | 8.4:-30182664 | None:intergenic |
| TATAAGTTGGATGAAGAATG+GGG | 0.581944 | 8.4:+30183378 | MS.gene012160:CDS |
| GCCATCTAACATCTCATCCA+AGG | 0.582881 | 8.4:-30183615 | None:intergenic |
| GAGTTGGAACTTGCATCAGT+TGG | 0.584443 | 8.4:-30182727 | None:intergenic |
| AGCTTGTTGTATCTTTCAAG+AGG | 0.595503 | 8.4:+30183032 | MS.gene012160:CDS |
| AAAGTAGTGAAGACATGGGA+AGG | 0.596556 | 8.4:+30183301 | MS.gene012160:CDS |
| AAGACTTAATTGGATATCAA+GGG | 0.598333 | 8.4:+30183478 | MS.gene012160:CDS |
| GCTTGTTGTATCTTTCAAGA+GGG | 0.601791 | 8.4:+30183033 | MS.gene012160:CDS |
| TGTTTAGCGAGTCGTAGACA+GGG | 0.623455 | 8.4:-30182669 | None:intergenic |
| CAATCCTCAACAGTAGTCCA+AGG | 0.640699 | 8.4:-30183006 | None:intergenic |
| CTACGATCGAGACACTGATG+TGG | 0.646731 | 8.4:+30183341 | MS.gene012160:CDS |
| AAATTAGGAATCATGAAACA+TGG | 0.647692 | 8.4:+30183057 | MS.gene012160:CDS |
| TTTCCAAGACCACACAAAGG+AGG | 0.655480 | 8.4:-30183222 | None:intergenic |
| AAGCATTTGATGGAGTCATG+TGG | 0.661502 | 8.4:+30183249 | MS.gene012160:CDS |
| TTGTTTCCAAGACCACACAA+AGG | 0.706863 | 8.4:-30183225 | None:intergenic |
| TATGAAAGTAGTGAAGACAT+GGG | 0.714849 | 8.4:+30183297 | MS.gene012160:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGTTTCAAAGTTTATAAGT+TGG | + | chr8.4:30183365-30183384 | MS.gene012160:CDS | 20.0% |
| !!! | AGTTTTATGTTACTGATAAA+TGG | + | chr8.4:30183148-30183167 | MS.gene012160:CDS | 20.0% |
| !!! | GTTTTATGTTACTGATAAAT+GGG | + | chr8.4:30183149-30183168 | MS.gene012160:CDS | 20.0% |
| !!! | TTTTATGTTACTGATAAATG+GGG | + | chr8.4:30183150-30183169 | MS.gene012160:CDS | 20.0% |
| ! | AAAGACTTAATTGGATATCA+AGG | + | chr8.4:30183477-30183496 | MS.gene012160:CDS | 25.0% |
| ! | AAATTAGGAATCATGAAACA+TGG | + | chr8.4:30183057-30183076 | MS.gene012160:CDS | 25.0% |
| ! | AAGACTTAATTGGATATCAA+GGG | + | chr8.4:30183478-30183497 | MS.gene012160:CDS | 25.0% |
| ! | TGATGTTCGTATGTATAATT+TGG | + | chr8.4:30183527-30183546 | MS.gene012160:CDS | 25.0% |
| !! | AGTTGGTTCAATGATATAAA+CGG | - | chr8.4:30182713-30182732 | None:intergenic | 25.0% |
| !! | TCAAGATATTTTCCTATCTT+AGG | - | chr8.4:30182544-30182563 | None:intergenic | 25.0% |
| !! | TTATAAGTTGGATGAAGAAT+GGG | + | chr8.4:30183377-30183396 | MS.gene012160:CDS | 25.0% |
| !! | TTTATAAGTTGGATGAAGAA+TGG | + | chr8.4:30183376-30183395 | MS.gene012160:CDS | 25.0% |
| !!! | TAAGAGGGTATGATAATTTT+CGG | - | chr8.4:30182852-30182871 | None:intergenic | 25.0% |
| ATAAATGGGGAACTATTTCA+TGG | + | chr8.4:30183163-30183182 | MS.gene012160:CDS | 30.0% | |
| ATCTTTCAAGAGGGTAAATT+AGG | + | chr8.4:30183042-30183061 | MS.gene012160:CDS | 30.0% | |
| CAATGATATAAACGGTTGAT+TGG | - | chr8.4:30182705-30182724 | None:intergenic | 30.0% | |
| GTCTCAACTAAAGACTTAAT+TGG | + | chr8.4:30183468-30183487 | MS.gene012160:CDS | 30.0% | |
| TATGAAAGTAGTGAAGACAT+GGG | + | chr8.4:30183297-30183316 | MS.gene012160:CDS | 30.0% | |
| ! | GGTATTTGTAATGGAAAAGA+AGG | - | chr8.4:30182646-30182665 | None:intergenic | 30.0% |
| ! | TATAAGTTGGATGAAGAATG+GGG | + | chr8.4:30183378-30183397 | MS.gene012160:CDS | 30.0% |
| ! | TGAAACATGGTGATGAAAAA+TGG | + | chr8.4:30183070-30183089 | MS.gene012160:CDS | 30.0% |
| !! | TAAAGGTTCTAAATTGGAGT+TGG | - | chr8.4:30182746-30182765 | None:intergenic | 30.0% |
| AATGGAAAAGAAGGAGAGTT+TGG | - | chr8.4:30182637-30182656 | None:intergenic | 35.0% | |
| ATAGAACTATGGCCTAAGAT+AGG | + | chr8.4:30182529-30182548 | MS.gene012160:CDS | 35.0% | |
| ATAGGACTCAACAAACTTAC+AGG | - | chr8.4:30182823-30182842 | None:intergenic | 35.0% | |
| ATCTGATTCTTCTTCATCCA+TGG | + | chr8.4:30182477-30182496 | MS.gene012160:CDS | 35.0% | |
| CTATGAAAGTAGTGAAGACA+TGG | + | chr8.4:30183296-30183315 | MS.gene012160:CDS | 35.0% | |
| CTCAACTTCCTATAGAACTA+TGG | + | chr8.4:30182518-30182537 | MS.gene012160:CDS | 35.0% | |
| GACGATGTTATTGTGTTCAA+GGG | + | chr8.4:30183123-30183142 | MS.gene012160:CDS | 35.0% | |
| GGATGATCATAGAATCACTA+TGG | + | chr8.4:30183548-30183567 | MS.gene012160:CDS | 35.0% | |
| TGACGATGTTATTGTGTTCA+AGG | + | chr8.4:30183122-30183141 | MS.gene012160:CDS | 35.0% | |
| TGATGAAAAATGGACACTTG+TGG | + | chr8.4:30183080-30183099 | MS.gene012160:CDS | 35.0% | |
| ! | AAGTGTTGTTACTGCTAAGA+GGG | - | chr8.4:30182867-30182886 | None:intergenic | 35.0% |
| ! | ATCTTAGGCCATAGTTCTAT+AGG | - | chr8.4:30182529-30182548 | None:intergenic | 35.0% |
| ! | CACAAAGTCTTGTCAATACA+AGG | - | chr8.4:30183585-30183604 | None:intergenic | 35.0% |
| ! | CTTGTATTGACAAGACTTTG+TGG | + | chr8.4:30183583-30183602 | MS.gene012160:CDS | 35.0% |
| ! | GATAATTTTCGGTCAGAGAT+AGG | - | chr8.4:30182841-30182860 | None:intergenic | 35.0% |
| !! | AGCTTGTTGTATCTTTCAAG+AGG | + | chr8.4:30183032-30183051 | MS.gene012160:CDS | 35.0% |
| !! | AGGTGCTAAAGGTTCTAAAT+TGG | - | chr8.4:30182752-30182771 | None:intergenic | 35.0% |
| !! | ATGGAACTTGTTGGATCATA+GGG | + | chr8.4:30182897-30182916 | MS.gene012160:CDS | 35.0% |
| !! | GCTTGTTGTATCTTTCAAGA+GGG | + | chr8.4:30183033-30183052 | MS.gene012160:CDS | 35.0% |
| !! | TATGGAACTTGTTGGATCAT+AGG | + | chr8.4:30182896-30182915 | MS.gene012160:CDS | 35.0% |
| !! | TGGAAACAAGAAGCATTTGA+TGG | + | chr8.4:30183239-30183258 | MS.gene012160:CDS | 35.0% |
| AAAGTAGTGAAGACATGGGA+AGG | + | chr8.4:30183301-30183320 | MS.gene012160:CDS | 40.0% | |
| AAGCATTTGATGGAGTCATG+TGG | + | chr8.4:30183249-30183268 | MS.gene012160:CDS | 40.0% | |
| AAGGGAACTGCATCTACTTT+AGG | + | chr8.4:30183496-30183515 | MS.gene012160:CDS | 40.0% | |
| ACAACACTTCTACCATGCTA+TGG | + | chr8.4:30182878-30182897 | MS.gene012160:CDS | 40.0% | |
| AGGGAACTGCATCTACTTTA+GGG | + | chr8.4:30183497-30183516 | MS.gene012160:CDS | 40.0% | |
| ATCCAACAAGTTCCATAGCA+TGG | - | chr8.4:30182893-30182912 | None:intergenic | 40.0% | |
| CCAATCAACTATCTCATCCA+TGG | - | chr8.4:30182497-30182516 | None:intergenic | 40.0% | |
| CCATGGATGAGATAGTTGAT+TGG | + | chr8.4:30182494-30182513 | MS.gene012160:CDS | 40.0% | |
| GGATGAAGAATGGGGAAAAT+GGG | + | chr8.4:30183386-30183405 | MS.gene012160:CDS | 40.0% | |
| TACCATGCTATGGAACTTGT+TGG | + | chr8.4:30182888-30182907 | MS.gene012160:CDS | 40.0% | |
| TACCTTAATCAGCCAACCTT+TGG | - | chr8.4:30182782-30182801 | None:intergenic | 40.0% | |
| TGGATGAAGAATGGGGAAAA+TGG | + | chr8.4:30183385-30183404 | MS.gene012160:CDS | 40.0% | |
| TGTTCTATCCTAACTCTCCT+TGG | + | chr8.4:30182989-30183008 | MS.gene012160:CDS | 40.0% | |
| TTAGCACCTTCTTCTTCCAA+AGG | + | chr8.4:30182763-30182782 | MS.gene012160:CDS | 40.0% | |
| TTGTTTCCAAGACCACACAA+AGG | - | chr8.4:30183228-30183247 | None:intergenic | 40.0% | |
| ! | ACAGGGTGAGGTATTTGTAA+TGG | - | chr8.4:30182655-30182674 | None:intergenic | 40.0% |
| ! | CAATTTTCACCTCCTTTGTG+TGG | + | chr8.4:30183213-30183232 | MS.gene012160:CDS | 40.0% |
| ! | TTCCAAAGGTTGGCTGATTA+AGG | + | chr8.4:30182777-30182796 | MS.gene012160:CDS | 40.0% |
| !! | GAAGTGTTGTTACTGCTAAG+AGG | - | chr8.4:30182868-30182887 | None:intergenic | 40.0% |
| !! | TTGGAAGAAGAAGGTGCTAA+AGG | - | chr8.4:30182763-30182782 | None:intergenic | 40.0% |
| ACAGTAGTCCAAGGAGAGTT+AGG | - | chr8.4:30183000-30183019 | None:intergenic | 45.0% | |
| CAATCCTCAACAGTAGTCCA+AGG | - | chr8.4:30183009-30183028 | None:intergenic | 45.0% | |
| CACCTTCTTCTTCCAAAGGT+TGG | + | chr8.4:30182767-30182786 | MS.gene012160:CDS | 45.0% | |
| GAAGGAGAGTTTGGATGAGA+TGG | - | chr8.4:30182628-30182647 | None:intergenic | 45.0% | |
| GAGTTGGAACTTGCATCAGT+TGG | - | chr8.4:30182730-30182749 | None:intergenic | 45.0% | |
| GTTTGGATGAGATGGAGGAA+TGG | - | chr8.4:30182620-30182639 | None:intergenic | 45.0% | |
| TGTTTAGCGAGTCGTAGACA+GGG | - | chr8.4:30182672-30182691 | None:intergenic | 45.0% | |
| TTGTTTAGCGAGTCGTAGAC+AGG | - | chr8.4:30182673-30182692 | None:intergenic | 45.0% | |
| TTTCCAAGACCACACAAAGG+AGG | - | chr8.4:30183225-30183244 | None:intergenic | 45.0% | |
| ! | AGCCAACCTTTGGAAGAAGA+AGG | - | chr8.4:30182772-30182791 | None:intergenic | 45.0% |
| CTACGATCGAGACACTGATG+TGG | + | chr8.4:30183341-30183360 | MS.gene012160:CDS | 50.0% | |
| CTCTCCTTGGACTACTGTTG+AGG | + | chr8.4:30183002-30183021 | MS.gene012160:CDS | 50.0% | |
| CTTTGTGGTCTCGTTCACCT+TGG | + | chr8.4:30183598-30183617 | MS.gene012160:CDS | 50.0% | |
| GGAGAGTTTGGATGAGATGG+AGG | - | chr8.4:30182625-30182644 | None:intergenic | 50.0% | |
| TCACCTCCTTTGTGTGGTCT+TGG | + | chr8.4:30183219-30183238 | MS.gene012160:CDS | 50.0% | |
| AGCGAGTCGTAGACAGGGTG+AGG | - | chr8.4:30182667-30182686 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 30182439 | 30183632 | 30182439 | ID=MS.gene012160 |
| chr8.4 | mRNA | 30182439 | 30183632 | 30182439 | ID=MS.gene012160.t1;Parent=MS.gene012160 |
| chr8.4 | exon | 30182439 | 30183632 | 30182439 | ID=MS.gene012160.t1.exon1;Parent=MS.gene012160.t1 |
| chr8.4 | CDS | 30182439 | 30183632 | 30182439 | ID=cds.MS.gene012160.t1;Parent=MS.gene012160.t1 |
| Gene Sequence |
| Protein sequence |
