Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44190.t1 | XP_003629211.1 | 94.7 | 397 | 21 | 0 | 1 | 397 | 1 | 397 | 3.70E-228 | 800.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44190.t1 | Q3EBZ2 | 29.9 | 405 | 237 | 13 | 23 | 395 | 1 | 390 | 3.0e-37 | 157.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44190.t1 | G7LA96 | 94.7 | 397 | 21 | 0 | 1 | 397 | 1 | 397 | 2.7e-228 | 800.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050645 | MS.gene44190 | 0.822937 | 1.81E-53 | -1.69E-46 |
| MS.gene052637 | MS.gene44190 | 0.827433 | 1.57E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene44190 | MS.gene28903 | PPI |
| MS.gene44190 | MS.gene025209 | PPI |
| MS.gene44190 | MS.gene28904 | PPI |
| MS.gene23495 | MS.gene44190 | PPI |
| MS.gene44190 | MS.gene44191 | PPI |
| MS.gene44190 | MS.gene30094 | PPI |
| MS.gene012159 | MS.gene44190 | PPI |
| MS.gene44190 | MS.gene08770 | PPI |
| MS.gene44190 | MS.gene64423 | PPI |
| MS.gene44190 | MS.gene66307 | PPI |
| MS.gene64423 | MS.gene44190 | PPI |
| MS.gene44190 | MS.gene023531 | PPI |
| MS.gene44190 | MS.gene23495 | PPI |
| MS.gene037197 | MS.gene44190 | PPI |
| MS.gene44190 | MS.gene018718 | PPI |
| MS.gene30094 | MS.gene44190 | PPI |
| MS.gene91760 | MS.gene44190 | PPI |
| MS.gene44190 | MS.gene049886 | PPI |
| MS.gene44190 | MS.gene97013 | PPI |
| MS.gene44190 | MS.gene017581 | PPI |
| MS.gene44190 | MS.gene91760 | PPI |
| MS.gene23497 | MS.gene44190 | PPI |
| MS.gene44190 | MS.gene037197 | PPI |
| MS.gene44190 | MS.gene012159 | PPI |
| MS.gene44190 | MS.gene012160 | PPI |
| MS.gene44190 | MS.gene017582 | PPI |
| MS.gene44190 | MS.gene39445 | PPI |
| MS.gene44190 | MS.gene064059 | PPI |
| MS.gene44190 | MS.gene23497 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44190.t1 | MTR_8g074610 | 94.710 | 397 | 21 | 0 | 1 | 397 | 1 | 397 | 0.0 | 761 |
| MS.gene44190.t1 | MTR_2g041510 | 76.500 | 400 | 83 | 5 | 1 | 397 | 1 | 392 | 0.0 | 592 |
| MS.gene44190.t1 | MTR_2g041510 | 76.053 | 380 | 81 | 4 | 20 | 397 | 1 | 372 | 0.0 | 581 |
| MS.gene44190.t1 | MTR_8g074640 | 74.142 | 379 | 95 | 3 | 20 | 397 | 1 | 377 | 0.0 | 579 |
| MS.gene44190.t1 | MTR_6g092570 | 33.333 | 375 | 203 | 10 | 21 | 383 | 4 | 343 | 1.90e-49 | 171 |
| MS.gene44190.t1 | MTR_8g085760 | 32.648 | 389 | 214 | 12 | 21 | 383 | 9 | 375 | 3.22e-49 | 171 |
| MS.gene44190.t1 | MTR_5g079830 | 33.427 | 356 | 184 | 9 | 20 | 359 | 1 | 319 | 1.38e-47 | 167 |
| MS.gene44190.t1 | MTR_7g096720 | 35.215 | 372 | 180 | 16 | 20 | 359 | 6 | 348 | 3.06e-46 | 163 |
| MS.gene44190.t1 | MTR_4g088925 | 33.780 | 373 | 191 | 12 | 33 | 383 | 34 | 372 | 3.75e-45 | 160 |
| MS.gene44190.t1 | MTR_3g030050 | 31.163 | 430 | 227 | 15 | 16 | 395 | 10 | 420 | 1.43e-43 | 157 |
| MS.gene44190.t1 | MTR_2g047180 | 29.427 | 384 | 238 | 12 | 24 | 395 | 3 | 365 | 7.84e-32 | 124 |
| MS.gene44190.t1 | MTR_1g016570 | 27.792 | 403 | 212 | 13 | 16 | 395 | 13 | 359 | 1.68e-30 | 120 |
| MS.gene44190.t1 | MTR_6g018390 | 29.330 | 358 | 195 | 14 | 23 | 359 | 3 | 323 | 3.18e-30 | 119 |
| MS.gene44190.t1 | MTR_3g029650 | 28.291 | 357 | 189 | 11 | 24 | 359 | 4 | 314 | 1.62e-29 | 121 |
| MS.gene44190.t1 | MTR_3g029650 | 26.703 | 367 | 228 | 11 | 16 | 361 | 364 | 710 | 4.45e-23 | 102 |
| MS.gene44190.t1 | MTR_1g007260 | 29.167 | 360 | 201 | 12 | 24 | 361 | 21 | 348 | 4.48e-29 | 117 |
| MS.gene44190.t1 | MTR_6g027100 | 28.606 | 409 | 220 | 18 | 24 | 396 | 4 | 376 | 7.16e-29 | 117 |
| MS.gene44190.t1 | MTR_1g026850 | 29.032 | 403 | 219 | 16 | 20 | 395 | 1 | 363 | 1.95e-28 | 114 |
| MS.gene44190.t1 | MTR_6g027040 | 27.543 | 403 | 234 | 17 | 24 | 397 | 4 | 377 | 2.76e-27 | 112 |
| MS.gene44190.t1 | MTR_3g058460 | 30.460 | 348 | 202 | 14 | 25 | 361 | 15 | 333 | 8.13e-27 | 110 |
| MS.gene44190.t1 | MTR_3g030360 | 27.273 | 396 | 219 | 15 | 22 | 395 | 2 | 350 | 4.91e-26 | 107 |
| MS.gene44190.t1 | MTR_3g030080 | 27.684 | 354 | 205 | 12 | 25 | 361 | 7 | 326 | 5.02e-25 | 105 |
| MS.gene44190.t1 | MTR_3g029620 | 27.340 | 406 | 228 | 15 | 23 | 395 | 1 | 372 | 7.92e-25 | 105 |
| MS.gene44190.t1 | MTR_6g018360 | 26.944 | 360 | 213 | 12 | 24 | 361 | 4 | 335 | 1.35e-24 | 104 |
| MS.gene44190.t1 | MTR_1g049170 | 25.721 | 416 | 236 | 17 | 20 | 395 | 1 | 383 | 4.11e-24 | 103 |
| MS.gene44190.t1 | MTR_3g029640 | 28.226 | 372 | 196 | 16 | 24 | 370 | 3 | 328 | 6.82e-24 | 102 |
| MS.gene44190.t1 | MTR_3g114990 | 28.291 | 357 | 219 | 12 | 24 | 363 | 22 | 358 | 7.21e-24 | 102 |
| MS.gene44190.t1 | MTR_3g030380 | 27.299 | 348 | 206 | 11 | 24 | 361 | 4 | 314 | 1.33e-23 | 101 |
| MS.gene44190.t1 | MTR_4g125090 | 26.347 | 334 | 171 | 10 | 21 | 340 | 41 | 313 | 8.04e-23 | 98.2 |
| MS.gene44190.t1 | MTR_3g030480 | 26.496 | 351 | 203 | 12 | 24 | 361 | 4 | 312 | 9.41e-23 | 98.6 |
| MS.gene44190.t1 | MTR_3g030355 | 27.361 | 413 | 218 | 17 | 20 | 382 | 1 | 381 | 2.34e-22 | 98.2 |
| MS.gene44190.t1 | MTR_3g091990 | 27.901 | 362 | 208 | 14 | 24 | 359 | 6 | 340 | 3.18e-22 | 98.2 |
| MS.gene44190.t1 | MTR_3g029670 | 27.456 | 397 | 223 | 14 | 24 | 382 | 4 | 373 | 1.87e-21 | 95.5 |
| MS.gene44190.t1 | MTR_3g114970 | 25.526 | 380 | 219 | 15 | 24 | 382 | 3 | 339 | 2.12e-21 | 94.7 |
| MS.gene44190.t1 | MTR_6g018400 | 26.257 | 358 | 203 | 10 | 22 | 357 | 2 | 320 | 3.01e-21 | 94.7 |
| MS.gene44190.t1 | MTR_3g030440 | 25.915 | 355 | 208 | 12 | 20 | 361 | 1 | 313 | 3.10e-21 | 94.4 |
| MS.gene44190.t1 | MTR_3g037710 | 32.489 | 237 | 119 | 7 | 140 | 361 | 9 | 219 | 3.55e-21 | 92.8 |
| MS.gene44190.t1 | MTR_3g029840 | 25.852 | 352 | 209 | 14 | 25 | 361 | 5 | 319 | 9.93e-21 | 92.8 |
| MS.gene44190.t1 | MTR_3g029920 | 28.429 | 401 | 213 | 16 | 24 | 394 | 8 | 364 | 1.18e-20 | 93.2 |
| MS.gene44190.t1 | MTR_3g092000 | 26.173 | 405 | 214 | 18 | 24 | 381 | 6 | 372 | 6.66e-20 | 91.3 |
| MS.gene44190.t1 | MTR_3g029950 | 27.297 | 370 | 190 | 16 | 25 | 365 | 5 | 324 | 3.05e-19 | 89.0 |
| MS.gene44190.t1 | MTR_6g018315 | 25.381 | 394 | 231 | 14 | 37 | 396 | 2 | 366 | 4.01e-19 | 89.0 |
| MS.gene44190.t1 | MTR_3g030560 | 26.225 | 408 | 227 | 19 | 24 | 395 | 3 | 372 | 9.13e-19 | 87.4 |
| MS.gene44190.t1 | MTR_3g029750 | 25.263 | 380 | 220 | 12 | 24 | 370 | 4 | 352 | 1.28e-18 | 87.0 |
| MS.gene44190.t1 | MTR_3g047980 | 27.926 | 376 | 220 | 14 | 25 | 395 | 30 | 359 | 1.27e-16 | 81.3 |
| MS.gene44190.t1 | MTR_3g029900 | 30.058 | 173 | 85 | 5 | 218 | 387 | 297 | 436 | 5.01e-14 | 73.9 |
| MS.gene44190.t1 | MTR_1g016540 | 29.947 | 187 | 101 | 6 | 227 | 395 | 4 | 178 | 1.44e-12 | 66.2 |
| MS.gene44190.t1 | MTR_6g018370 | 35.115 | 131 | 71 | 5 | 210 | 337 | 132 | 251 | 5.93e-12 | 65.9 |
| MS.gene44190.t1 | MTR_1g007250 | 33.333 | 144 | 79 | 4 | 227 | 367 | 4 | 133 | 1.46e-11 | 62.8 |
| MS.gene44190.t1 | MTR_5g042230 | 32.895 | 152 | 88 | 5 | 210 | 359 | 13 | 152 | 1.59e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44190.t1 | AT2G17030 | 29.877 | 405 | 237 | 13 | 23 | 395 | 1 | 390 | 3.16e-41 | 150 |
| MS.gene44190.t1 | AT2G17036 | 28.571 | 406 | 235 | 16 | 23 | 395 | 1 | 384 | 4.85e-36 | 136 |
| MS.gene44190.t1 | AT2G17036 | 28.642 | 405 | 234 | 16 | 24 | 395 | 1 | 383 | 7.76e-36 | 135 |
| MS.gene44190.t1 | AT1G65770 | 28.610 | 367 | 212 | 13 | 23 | 372 | 1 | 334 | 2.56e-34 | 130 |
| MS.gene44190.t1 | AT4G35733 | 29.124 | 388 | 214 | 15 | 20 | 384 | 1 | 350 | 1.88e-33 | 128 |
| MS.gene44190.t1 | AT2G26160 | 30.312 | 353 | 193 | 14 | 25 | 361 | 5 | 320 | 1.64e-29 | 117 |
| MS.gene44190.t1 | AT1G44080 | 28.533 | 368 | 210 | 13 | 24 | 381 | 4 | 328 | 2.25e-29 | 117 |
| MS.gene44190.t1 | AT3G25750 | 27.688 | 372 | 220 | 11 | 22 | 376 | 2 | 341 | 1.14e-27 | 112 |
| MS.gene44190.t1 | AT3G25750 | 28.378 | 370 | 206 | 13 | 22 | 376 | 2 | 327 | 2.03e-26 | 108 |
| MS.gene44190.t1 | AT2G17690 | 28.910 | 422 | 215 | 15 | 25 | 379 | 3 | 406 | 1.08e-25 | 108 |
| MS.gene44190.t1 | AT5G60060 | 29.683 | 347 | 196 | 16 | 26 | 351 | 11 | 330 | 1.26e-23 | 101 |
| MS.gene44190.t1 | AT1G65740 | 27.926 | 376 | 215 | 14 | 23 | 372 | 1 | 346 | 2.23e-23 | 100 |
| MS.gene44190.t1 | AT1G65760 | 28.142 | 366 | 211 | 14 | 25 | 372 | 5 | 336 | 9.45e-23 | 99.0 |
| MS.gene44190.t1 | AT2G16290 | 26.494 | 385 | 227 | 16 | 23 | 371 | 1 | 365 | 4.06e-19 | 89.0 |
| MS.gene44190.t1 | AT5G24040 | 24.936 | 393 | 213 | 16 | 23 | 381 | 1 | 345 | 1.89e-15 | 77.8 |
| MS.gene44190.t1 | AT1G64840 | 24.789 | 355 | 214 | 14 | 25 | 359 | 4 | 325 | 1.56e-12 | 68.9 |
Find 72 sgRNAs with CRISPR-Local
Find 79 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATGTTCGTATGTATAATT+TGG | 0.212475 | 8.1:+32152318 | MS.gene44190:CDS |
| TCACCTCCTTTGTGTGGATT+TGG | 0.230521 | 8.1:+32152010 | MS.gene44190:CDS |
| AAGGGAACTGCATCTACTTT+AGG | 0.247416 | 8.1:+32152287 | MS.gene44190:CDS |
| ATCTTTCAAGAGGGTAAATT+AGG | 0.254641 | 8.1:+32151833 | MS.gene44190:CDS |
| GTCTCAACTAAAGACTTAAT+TGG | 0.265830 | 8.1:+32152259 | MS.gene44190:CDS |
| TGGATGAAGAATGGGGAAAA+TGG | 0.270862 | 8.1:+32152176 | MS.gene44190:CDS |
| TTCCAAAGGTTGGCTGATTA+AGG | 0.291497 | 8.1:+32151568 | MS.gene44190:CDS |
| AATGGAAAAGAAGGAGAGTT+TGG | 0.332443 | 8.1:-32151425 | None:intergenic |
| AGGTGCTAAAGGTTCTAAAT+TGG | 0.350268 | 8.1:-32151540 | None:intergenic |
| TATGGAACTTGTTGGATCAT+AGG | 0.360148 | 8.1:+32151687 | MS.gene44190:CDS |
| ATAGGACTCAACAAACTTAC+AGG | 0.370665 | 8.1:-32151611 | None:intergenic |
| ATAAATGGGGAACTATTTCA+TGG | 0.373052 | 8.1:+32151954 | MS.gene44190:CDS |
| AGGGAACTGCATCTACTTTA+GGG | 0.379511 | 8.1:+32152288 | MS.gene44190:CDS |
| GAAGGAGAGTTTGGATGAGA+TGG | 0.382409 | 8.1:-32151416 | None:intergenic |
| CTCAACTTCCTATAGAACTA+TGG | 0.385206 | 8.1:+32151309 | MS.gene44190:CDS |
| CAATGATATAAACGGTTGAT+TGG | 0.387856 | 8.1:-32151493 | None:intergenic |
| ACACTAGTCCAAGGAGAGTT+AGG | 0.390020 | 8.1:-32151788 | None:intergenic |
| TTATAAGTTGGATGAAGAAT+GGG | 0.394790 | 8.1:+32152168 | MS.gene44190:CDS |
| TACCTTAATCAGCCAACCTT+TGG | 0.397147 | 8.1:-32151570 | None:intergenic |
| TTTATAAGTTGGATGAAGAA+TGG | 0.397683 | 8.1:+32152167 | MS.gene44190:CDS |
| CACCTTCTTCTTCCAAAGGT+TGG | 0.399560 | 8.1:+32151558 | MS.gene44190:CDS |
| AAAGACTTAATTGGATATCA+AGG | 0.406036 | 8.1:+32152268 | MS.gene44190:CDS |
| TGGAAACAAGAAGCATTTGA+TGG | 0.415140 | 8.1:+32152030 | MS.gene44190:CDS |
| TGTTCTATCCTAACTCTCCT+TGG | 0.421475 | 8.1:+32151780 | MS.gene44190:CDS |
| GGATGATCATAGCATCACTA+TGG | 0.424059 | 8.1:+32152339 | MS.gene44190:CDS |
| ATCTTAGGCCATAGTTCTAT+AGG | 0.430698 | 8.1:-32151317 | None:intergenic |
| AGTTGGTTCAATGATATAAA+CGG | 0.439030 | 8.1:-32151501 | None:intergenic |
| TACCATGCTATGGAACTTGT+TGG | 0.443560 | 8.1:+32151679 | MS.gene44190:CDS |
| ATCTGATTCTTCTTCATCCA+TGG | 0.450631 | 8.1:+32151268 | MS.gene44190:CDS |
| TGACGATGTTATTGTGTTCA+AGG | 0.452162 | 8.1:+32151913 | MS.gene44190:CDS |
| ATAGAACTATGGCCTAAGAT+AGG | 0.452927 | 8.1:+32151320 | MS.gene44190:CDS |
| TTGTTTAGCGAGTCGTAGAC+AGG | 0.454181 | 8.1:-32151461 | None:intergenic |
| CTTGTATTGACAAGACTTTG+TGG | 0.456773 | 8.1:+32152374 | MS.gene44190:CDS |
| ATGTTTCAAAGTTTATAAGT+TGG | 0.473392 | 8.1:+32152156 | MS.gene44190:CDS |
| GGATGAAGAATGGGGAAAAT+GGG | 0.473828 | 8.1:+32152177 | MS.gene44190:CDS |
| GGAGAGTTTGGATGAGATGG+AGG | 0.480906 | 8.1:-32151413 | None:intergenic |
| CTTTGTGGTCTCGTTCACCT+TGG | 0.488154 | 8.1:+32152389 | MS.gene44190:CDS |
| ATGGAACTTGTTGGATCATA+GGG | 0.493145 | 8.1:+32151688 | MS.gene44190:CDS |
| CTGTGAAAGTAGTGAAGACA+TGG | 0.493157 | 8.1:+32152087 | MS.gene44190:CDS |
| TTGGAAGAAGAAGGTGCTAA+AGG | 0.501406 | 8.1:-32151551 | None:intergenic |
| ACAGGGTGAGGTATTTGTAA+TGG | 0.505888 | 8.1:-32151443 | None:intergenic |
| CACAAAGTCTTGTCAATACA+AGG | 0.513043 | 8.1:-32152373 | None:intergenic |
| GGTATTTGTAATGGAAAAGA+AGG | 0.516150 | 8.1:-32151434 | None:intergenic |
| TAAAGGTTCTAAATTGGAGT+TGG | 0.521984 | 8.1:-32151534 | None:intergenic |
| GAAGTGTTGTTACTGCTAAG+AGG | 0.538395 | 8.1:-32151656 | None:intergenic |
| CAATTCTCACCTCCTTTGTG+TGG | 0.538436 | 8.1:+32152004 | MS.gene44190:CDS |
| GTTTGGATGAGATGGAGGAA+TGG | 0.540037 | 8.1:-32151408 | None:intergenic |
| CCAATCAACTATCTCATCCA+TGG | 0.548037 | 8.1:-32151285 | None:intergenic |
| CCATGGATGAGATAGTTGAT+TGG | 0.548664 | 8.1:+32151285 | MS.gene44190:CDS |
| ACAACACTTCTACCATGCTA+TGG | 0.549319 | 8.1:+32151669 | MS.gene44190:CDS |
| TTAGCACCTTCTTCTTCCAA+AGG | 0.559083 | 8.1:+32151554 | MS.gene44190:CDS |
| AGCCAACCTTTGGAAGAAGA+AGG | 0.565959 | 8.1:-32151560 | None:intergenic |
| ATCCAACAAGTTCCATAGCA+TGG | 0.567906 | 8.1:-32151681 | None:intergenic |
| GACGATGTTATTGTGTTCAA+GGG | 0.569592 | 8.1:+32151914 | MS.gene44190:CDS |
| AAGTGTTGTTACTGCTAAGA+GGG | 0.570047 | 8.1:-32151655 | None:intergenic |
| AGCGAGTCGTAGACAGGGTG+AGG | 0.572671 | 8.1:-32151455 | None:intergenic |
| TATAAGTTGGATGAAGAATG+GGG | 0.581944 | 8.1:+32152169 | MS.gene44190:CDS |
| GCCATCTAACATCTCATCCA+AGG | 0.582881 | 8.1:-32152406 | None:intergenic |
| CTCTCCTTGGACTAGTGTTG+AGG | 0.583954 | 8.1:+32151793 | MS.gene44190:CDS |
| GAGTTGGAACTTGCATCAGT+TGG | 0.584443 | 8.1:-32151518 | None:intergenic |
| AGCTTGTTGTATCTTTCAAG+AGG | 0.595503 | 8.1:+32151823 | MS.gene44190:CDS |
| AAGACTTAATTGGATATCAA+GGG | 0.598333 | 8.1:+32152269 | MS.gene44190:CDS |
| GCTTGTTGTATCTTTCAAGA+GGG | 0.601791 | 8.1:+32151824 | MS.gene44190:CDS |
| TGTTTAGCGAGTCGTAGACA+GGG | 0.623455 | 8.1:-32151460 | None:intergenic |
| AAATTAGGATTCATGAAACA+TGG | 0.629944 | 8.1:+32151848 | MS.gene44190:CDS |
| TTTCCAAATCCACACAAAGG+AGG | 0.638096 | 8.1:-32152013 | None:intergenic |
| AAAGTAGTGAAGACATGGGA+AGG | 0.643211 | 8.1:+32152092 | MS.gene44190:CDS |
| CTACGATCGAGACACTGATG+TGG | 0.646731 | 8.1:+32152132 | MS.gene44190:CDS |
| CATTCCTCAACACTAGTCCA+AGG | 0.647862 | 8.1:-32151797 | None:intergenic |
| TTGTTTCCAAATCCACACAA+AGG | 0.650065 | 8.1:-32152016 | None:intergenic |
| AAGCATTTGATGGAGTCATG+TGG | 0.661502 | 8.1:+32152040 | MS.gene44190:CDS |
| TGTGAAAGTAGTGAAGACAT+GGG | 0.714849 | 8.1:+32152088 | MS.gene44190:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGTTTCAAAGTTTATAAGT+TGG | + | chr8.1:32152156-32152175 | MS.gene44190:CDS | 20.0% |
| !!! | AGTTTTATGTTACTGATAAA+TGG | + | chr8.1:32151939-32151958 | MS.gene44190:CDS | 20.0% |
| !!! | GTTTTATGTTACTGATAAAT+GGG | + | chr8.1:32151940-32151959 | MS.gene44190:CDS | 20.0% |
| !!! | TTTTATGTTACTGATAAATG+GGG | + | chr8.1:32151941-32151960 | MS.gene44190:CDS | 20.0% |
| ! | AAAGACTTAATTGGATATCA+AGG | + | chr8.1:32152268-32152287 | MS.gene44190:CDS | 25.0% |
| ! | AAATTAGGATTCATGAAACA+TGG | + | chr8.1:32151848-32151867 | MS.gene44190:CDS | 25.0% |
| ! | AAGACTTAATTGGATATCAA+GGG | + | chr8.1:32152269-32152288 | MS.gene44190:CDS | 25.0% |
| ! | TGATGTTCGTATGTATAATT+TGG | + | chr8.1:32152318-32152337 | MS.gene44190:CDS | 25.0% |
| !! | AGTTGGTTCAATGATATAAA+CGG | - | chr8.1:32151504-32151523 | None:intergenic | 25.0% |
| !! | TCAAGATATTTTCCTATCTT+AGG | - | chr8.1:32151335-32151354 | None:intergenic | 25.0% |
| !! | TTATAAGTTGGATGAAGAAT+GGG | + | chr8.1:32152168-32152187 | MS.gene44190:CDS | 25.0% |
| !! | TTTATAAGTTGGATGAAGAA+TGG | + | chr8.1:32152167-32152186 | MS.gene44190:CDS | 25.0% |
| !!! | TAAGAGGGTATGATAATTTT+CGG | - | chr8.1:32151643-32151662 | None:intergenic | 25.0% |
| ATAAATGGGGAACTATTTCA+TGG | + | chr8.1:32151954-32151973 | MS.gene44190:CDS | 30.0% | |
| ATCTTTCAAGAGGGTAAATT+AGG | + | chr8.1:32151833-32151852 | MS.gene44190:CDS | 30.0% | |
| CAATGATATAAACGGTTGAT+TGG | - | chr8.1:32151496-32151515 | None:intergenic | 30.0% | |
| GTCTCAACTAAAGACTTAAT+TGG | + | chr8.1:32152259-32152278 | MS.gene44190:CDS | 30.0% | |
| ! | GGTATTTGTAATGGAAAAGA+AGG | - | chr8.1:32151437-32151456 | None:intergenic | 30.0% |
| ! | TATAAGTTGGATGAAGAATG+GGG | + | chr8.1:32152169-32152188 | MS.gene44190:CDS | 30.0% |
| ! | TGAAACATGGTGATGAAAAA+TGG | + | chr8.1:32151861-32151880 | MS.gene44190:CDS | 30.0% |
| !! | TAAAGGTTCTAAATTGGAGT+TGG | - | chr8.1:32151537-32151556 | None:intergenic | 30.0% |
| AATGGAAAAGAAGGAGAGTT+TGG | - | chr8.1:32151428-32151447 | None:intergenic | 35.0% | |
| ATAGAACTATGGCCTAAGAT+AGG | + | chr8.1:32151320-32151339 | MS.gene44190:CDS | 35.0% | |
| ATAGGACTCAACAAACTTAC+AGG | - | chr8.1:32151614-32151633 | None:intergenic | 35.0% | |
| ATCTGATTCTTCTTCATCCA+TGG | + | chr8.1:32151268-32151287 | MS.gene44190:CDS | 35.0% | |
| CTCAACTTCCTATAGAACTA+TGG | + | chr8.1:32151309-32151328 | MS.gene44190:CDS | 35.0% | |
| GACGATGTTATTGTGTTCAA+GGG | + | chr8.1:32151914-32151933 | MS.gene44190:CDS | 35.0% | |
| TGACGATGTTATTGTGTTCA+AGG | + | chr8.1:32151913-32151932 | MS.gene44190:CDS | 35.0% | |
| TGATGAAAAATGGACACTTG+TGG | + | chr8.1:32151871-32151890 | MS.gene44190:CDS | 35.0% | |
| TGTGAAAGTAGTGAAGACAT+GGG | + | chr8.1:32152088-32152107 | MS.gene44190:CDS | 35.0% | |
| TTGTTTCCAAATCCACACAA+AGG | - | chr8.1:32152019-32152038 | None:intergenic | 35.0% | |
| ! | AAGTGTTGTTACTGCTAAGA+GGG | - | chr8.1:32151658-32151677 | None:intergenic | 35.0% |
| ! | ATCTTAGGCCATAGTTCTAT+AGG | - | chr8.1:32151320-32151339 | None:intergenic | 35.0% |
| ! | CACAAAGTCTTGTCAATACA+AGG | - | chr8.1:32152376-32152395 | None:intergenic | 35.0% |
| ! | CTTGTATTGACAAGACTTTG+TGG | + | chr8.1:32152374-32152393 | MS.gene44190:CDS | 35.0% |
| ! | GATAATTTTCGGTCAGAGAT+AGG | - | chr8.1:32151632-32151651 | None:intergenic | 35.0% |
| !! | AGCTTGTTGTATCTTTCAAG+AGG | + | chr8.1:32151823-32151842 | MS.gene44190:CDS | 35.0% |
| !! | AGGTGCTAAAGGTTCTAAAT+TGG | - | chr8.1:32151543-32151562 | None:intergenic | 35.0% |
| !! | ATGGAACTTGTTGGATCATA+GGG | + | chr8.1:32151688-32151707 | MS.gene44190:CDS | 35.0% |
| !! | GCTTGTTGTATCTTTCAAGA+GGG | + | chr8.1:32151824-32151843 | MS.gene44190:CDS | 35.0% |
| !! | TATGGAACTTGTTGGATCAT+AGG | + | chr8.1:32151687-32151706 | MS.gene44190:CDS | 35.0% |
| !! | TGGAAACAAGAAGCATTTGA+TGG | + | chr8.1:32152030-32152049 | MS.gene44190:CDS | 35.0% |
| AAAGTAGTGAAGACATGGGA+AGG | + | chr8.1:32152092-32152111 | MS.gene44190:CDS | 40.0% | |
| AAGCATTTGATGGAGTCATG+TGG | + | chr8.1:32152040-32152059 | MS.gene44190:CDS | 40.0% | |
| AAGGGAACTGCATCTACTTT+AGG | + | chr8.1:32152287-32152306 | MS.gene44190:CDS | 40.0% | |
| ACAACACTTCTACCATGCTA+TGG | + | chr8.1:32151669-32151688 | MS.gene44190:CDS | 40.0% | |
| AGGGAACTGCATCTACTTTA+GGG | + | chr8.1:32152288-32152307 | MS.gene44190:CDS | 40.0% | |
| ATCCAACAAGTTCCATAGCA+TGG | - | chr8.1:32151684-32151703 | None:intergenic | 40.0% | |
| CCAATCAACTATCTCATCCA+TGG | - | chr8.1:32151288-32151307 | None:intergenic | 40.0% | |
| CCATGGATGAGATAGTTGAT+TGG | + | chr8.1:32151285-32151304 | MS.gene44190:CDS | 40.0% | |
| CTGTGAAAGTAGTGAAGACA+TGG | + | chr8.1:32152087-32152106 | MS.gene44190:CDS | 40.0% | |
| GGATGAAGAATGGGGAAAAT+GGG | + | chr8.1:32152177-32152196 | MS.gene44190:CDS | 40.0% | |
| GGATGATCATAGCATCACTA+TGG | + | chr8.1:32152339-32152358 | MS.gene44190:CDS | 40.0% | |
| TACCATGCTATGGAACTTGT+TGG | + | chr8.1:32151679-32151698 | MS.gene44190:CDS | 40.0% | |
| TACCTTAATCAGCCAACCTT+TGG | - | chr8.1:32151573-32151592 | None:intergenic | 40.0% | |
| TGGATGAAGAATGGGGAAAA+TGG | + | chr8.1:32152176-32152195 | MS.gene44190:CDS | 40.0% | |
| TGTTCTATCCTAACTCTCCT+TGG | + | chr8.1:32151780-32151799 | MS.gene44190:CDS | 40.0% | |
| TTAGCACCTTCTTCTTCCAA+AGG | + | chr8.1:32151554-32151573 | MS.gene44190:CDS | 40.0% | |
| TTTCCAAATCCACACAAAGG+AGG | - | chr8.1:32152016-32152035 | None:intergenic | 40.0% | |
| ! | ACAGGGTGAGGTATTTGTAA+TGG | - | chr8.1:32151446-32151465 | None:intergenic | 40.0% |
| ! | TTCCAAAGGTTGGCTGATTA+AGG | + | chr8.1:32151568-32151587 | MS.gene44190:CDS | 40.0% |
| !! | GAAGTGTTGTTACTGCTAAG+AGG | - | chr8.1:32151659-32151678 | None:intergenic | 40.0% |
| !! | TTGGAAGAAGAAGGTGCTAA+AGG | - | chr8.1:32151554-32151573 | None:intergenic | 40.0% |
| ACACTAGTCCAAGGAGAGTT+AGG | - | chr8.1:32151791-32151810 | None:intergenic | 45.0% | |
| CAATTCTCACCTCCTTTGTG+TGG | + | chr8.1:32152004-32152023 | MS.gene44190:CDS | 45.0% | |
| CACCTTCTTCTTCCAAAGGT+TGG | + | chr8.1:32151558-32151577 | MS.gene44190:CDS | 45.0% | |
| CATTCCTCAACACTAGTCCA+AGG | - | chr8.1:32151800-32151819 | None:intergenic | 45.0% | |
| GAAGGAGAGTTTGGATGAGA+TGG | - | chr8.1:32151419-32151438 | None:intergenic | 45.0% | |
| GAGTTGGAACTTGCATCAGT+TGG | - | chr8.1:32151521-32151540 | None:intergenic | 45.0% | |
| GTTTGGATGAGATGGAGGAA+TGG | - | chr8.1:32151411-32151430 | None:intergenic | 45.0% | |
| TCACCTCCTTTGTGTGGATT+TGG | + | chr8.1:32152010-32152029 | MS.gene44190:CDS | 45.0% | |
| TGTTTAGCGAGTCGTAGACA+GGG | - | chr8.1:32151463-32151482 | None:intergenic | 45.0% | |
| TTGTTTAGCGAGTCGTAGAC+AGG | - | chr8.1:32151464-32151483 | None:intergenic | 45.0% | |
| ! | AGCCAACCTTTGGAAGAAGA+AGG | - | chr8.1:32151563-32151582 | None:intergenic | 45.0% |
| CTACGATCGAGACACTGATG+TGG | + | chr8.1:32152132-32152151 | MS.gene44190:CDS | 50.0% | |
| CTTTGTGGTCTCGTTCACCT+TGG | + | chr8.1:32152389-32152408 | MS.gene44190:CDS | 50.0% | |
| GGAGAGTTTGGATGAGATGG+AGG | - | chr8.1:32151416-32151435 | None:intergenic | 50.0% | |
| !! | CTCTCCTTGGACTAGTGTTG+AGG | + | chr8.1:32151793-32151812 | MS.gene44190:CDS | 50.0% |
| AGCGAGTCGTAGACAGGGTG+AGG | - | chr8.1:32151458-32151477 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 32151230 | 32152423 | 32151230 | ID=MS.gene44190 |
| chr8.1 | mRNA | 32151230 | 32152423 | 32151230 | ID=MS.gene44190.t1;Parent=MS.gene44190 |
| chr8.1 | exon | 32151230 | 32152423 | 32151230 | ID=MS.gene44190.t1.exon1;Parent=MS.gene44190.t1 |
| chr8.1 | CDS | 32151230 | 32152423 | 32151230 | ID=cds.MS.gene44190.t1;Parent=MS.gene44190.t1 |
| Gene Sequence |
| Protein sequence |
