AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene91760

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene91760.t1 MTR_2g041510 89.974 379 29 3 1 377 21 392 0.0 685
MS.gene91760.t1 MTR_2g041510 89.974 379 29 3 1 377 1 372 0.0 684
MS.gene91760.t1 MTR_8g074610 78.892 379 77 3 1 377 20 397 0.0 617
MS.gene91760.t1 MTR_8g074640 74.074 378 96 2 1 377 1 377 0.0 565
MS.gene91760.t1 MTR_8g085760 34.343 396 197 14 2 363 9 375 5.32e-53 180
MS.gene91760.t1 MTR_6g092570 35.027 374 197 10 2 363 4 343 5.86e-51 174
MS.gene91760.t1 MTR_5g079830 33.242 364 173 9 1 339 1 319 7.50e-48 167
MS.gene91760.t1 MTR_7g096720 35.027 374 183 13 8 350 15 359 9.66e-47 164
MS.gene91760.t1 MTR_4g088925 33.957 374 188 12 14 363 34 372 3.06e-46 162
MS.gene91760.t1 MTR_3g030050 30.097 412 229 11 5 369 15 414 7.70e-41 149
MS.gene91760.t1 MTR_6g018390 32.295 353 188 14 5 339 4 323 1.10e-32 126
MS.gene91760.t1 MTR_1g026850 30.447 358 197 14 1 341 1 323 4.26e-32 124
MS.gene91760.t1 MTR_2g047180 28.238 386 227 13 5 369 3 359 5.14e-32 124
MS.gene91760.t1 MTR_6g027100 29.925 401 210 16 5 369 4 369 4.69e-31 122
MS.gene91760.t1 MTR_1g007260 28.496 379 211 15 5 355 21 367 3.33e-30 119
MS.gene91760.t1 MTR_3g058460 33.046 348 192 16 6 341 15 333 3.57e-28 114
MS.gene91760.t1 MTR_6g027040 27.889 398 222 16 5 369 4 369 7.53e-28 113
MS.gene91760.t1 MTR_3g030360 28.941 387 211 12 3 369 2 344 7.73e-28 112
MS.gene91760.t1 MTR_3g029650 27.717 368 176 10 5 339 4 314 1.21e-27 115
MS.gene91760.t1 MTR_3g029650 25.320 391 228 13 4 356 370 734 4.36e-25 107
MS.gene91760.t1 MTR_3g029640 28.534 382 205 13 4 361 2 339 6.61e-27 110
MS.gene91760.t1 MTR_3g030380 28.455 369 218 11 4 358 3 339 3.58e-26 108
MS.gene91760.t1 MTR_6g018360 27.822 381 202 15 5 354 4 342 4.39e-26 108
MS.gene91760.t1 MTR_6g018400 27.297 381 217 13 3 361 2 344 9.27e-26 107
MS.gene91760.t1 MTR_3g029620 28.272 382 214 14 5 361 2 348 1.08e-25 107
MS.gene91760.t1 MTR_1g016570 27.532 385 206 13 6 369 21 353 7.93e-25 104
MS.gene91760.t1 MTR_3g030480 27.957 372 212 14 5 358 4 337 8.53e-25 104
MS.gene91760.t1 MTR_4g125090 28.267 329 170 10 2 320 41 313 2.80e-24 102
MS.gene91760.t1 MTR_3g030355 28.495 372 218 15 1 343 1 353 4.35e-24 102
MS.gene91760.t1 MTR_3g030440 27.128 376 218 14 1 358 1 338 1.66e-23 100
MS.gene91760.t1 MTR_3g030080 27.841 352 206 12 6 341 7 326 2.11e-23 100
MS.gene91760.t1 MTR_1g049170 26.536 407 231 17 1 369 1 377 2.64e-23 100
MS.gene91760.t1 MTR_3g114970 25.203 369 233 12 5 362 3 339 4.25e-23 99.4
MS.gene91760.t1 MTR_3g029840 27.198 364 190 14 5 341 4 319 1.88e-22 97.4
MS.gene91760.t1 MTR_3g029920 29.426 401 200 18 4 369 7 359 4.05e-22 97.1
MS.gene91760.t1 MTR_3g114990 26.111 360 224 11 5 344 22 359 1.39e-21 95.9
MS.gene91760.t1 MTR_3g091990 25.450 389 227 15 4 356 5 366 2.38e-21 95.1
MS.gene91760.t1 MTR_3g029950 28.032 371 187 16 5 345 4 324 4.35e-21 94.0
MS.gene91760.t1 MTR_3g030560 26.823 384 218 14 4 356 2 353 4.63e-21 94.0
MS.gene91760.t1 MTR_3g037710 32.381 210 117 6 161 356 45 243 5.34e-21 92.0
MS.gene91760.t1 MTR_3g029670 26.214 412 216 17 5 366 4 377 1.65e-20 92.4
MS.gene91760.t1 MTR_6g018370 28.875 329 140 13 4 317 2 251 3.77e-20 89.4
MS.gene91760.t1 MTR_6g018315 25.641 390 226 13 18 372 2 362 5.05e-20 91.3
MS.gene91760.t1 MTR_3g029750 25.587 383 214 13 5 350 4 352 8.52e-20 90.5
MS.gene91760.t1 MTR_3g047980 30.769 377 195 18 6 369 30 353 1.79e-16 80.5
MS.gene91760.t1 MTR_3g029820 27.136 398 171 17 4 373 7 313 1.77e-15 77.0
MS.gene91760.t1 MTR_3g029900 32.370 173 81 5 198 367 297 436 1.87e-14 75.1
MS.gene91760.t1 MTR_5g042230 35.526 152 84 5 190 339 13 152 1.33e-13 69.7
MS.gene91760.t1 MTR_1g016540 32.240 183 94 7 205 369 2 172 2.34e-13 68.6
MS.gene91760.t1 MTR_1g007250 33.333 144 79 4 207 347 4 133 1.61e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene91760.t1 AT2G17030 31.169 385 215 16 5 360 2 365 5.37e-39 144
MS.gene91760.t1 AT1G65770 30.084 359 214 11 5 352 2 334 2.74e-38 141
MS.gene91760.t1 AT4G35733 28.608 395 206 13 1 364 1 350 4.50e-38 140
MS.gene91760.t1 AT2G26160 31.755 359 193 15 3 346 2 323 2.46e-34 129
MS.gene91760.t1 AT3G25750 29.223 373 212 13 3 356 2 341 4.67e-33 127
MS.gene91760.t1 AT3G25750 29.380 371 200 13 3 356 2 327 4.14e-32 124
MS.gene91760.t1 AT2G17036 28.232 379 228 13 5 360 2 359 2.27e-31 123
MS.gene91760.t1 AT2G17036 28.232 379 228 13 5 360 1 358 2.37e-31 123
MS.gene91760.t1 AT1G44080 29.620 368 207 11 4 361 3 328 5.63e-31 121
MS.gene91760.t1 AT1G65740 30.220 364 219 14 5 352 2 346 3.12e-28 114
MS.gene91760.t1 AT1G65760 29.396 364 208 14 6 352 5 336 3.28e-26 108
MS.gene91760.t1 AT2G17690 27.896 423 215 16 6 358 3 405 4.40e-23 100
MS.gene91760.t1 AT2G16290 26.290 407 228 16 5 363 2 384 8.81e-21 93.6
MS.gene91760.t1 AT5G60060 28.926 363 200 19 7 344 11 340 2.17e-19 89.0
MS.gene91760.t1 AT2G24250 27.577 359 183 19 6 339 15 321 2.78e-17 82.8
MS.gene91760.t1 AT2G24250 27.577 359 183 19 6 339 15 321 2.78e-17 82.8
MS.gene91760.t1 AT5G24040 24.665 373 197 14 5 341 2 326 1.57e-15 77.8
MS.gene91760.t1 AT1G57906 31.515 165 76 5 196 328 67 226 3.34e-13 68.9

Find 75 sgRNAs with CRISPR-Local

Find 83 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGGAATTGCATCTACTTTA+AGG 0.156851 2.1:-49597694 MS.gene91760:CDS
TATAAAATTGAAAAGATTAA+AGG 0.167135 2.1:-49598251 MS.gene91760:CDS
TAATGTTCGTATGTATAATT+TGG 0.171010 2.1:-49597664 MS.gene91760:CDS
CCACAACCTCGTATCGATTT+TGG 0.173420 2.1:+49597850 None:intergenic
GTTTCGGCTAAAGAATTAAT+TGG 0.188705 2.1:-49597723 MS.gene91760:CDS
TCACCTCCTTTGTGTGGTTT+TGG 0.214421 2.1:-49597972 MS.gene91760:CDS
AAAGGAAAAGAAGGAGAATT+TGG 0.264948 2.1:+49598554 None:intergenic
CTCCAAAGGTTGGTTGATTA+AGG 0.266894 2.1:-49598414 MS.gene91760:CDS
TATGGAACATGTTGGATTAT+AGG 0.282617 2.1:-49598295 MS.gene91760:CDS
AGAAGAAGAAGGTGCTAAAC+TGG 0.284874 2.1:+49598442 None:intergenic
ATGGAACATGTTGGATTATA+GGG 0.306390 2.1:-49598294 MS.gene91760:CDS
ACAACACTTCCCTGATGATA+TGG 0.323704 2.1:-49598313 MS.gene91760:CDS
AGTTGGTTGAATAAGATAAA+TGG 0.329748 2.1:+49598481 None:intergenic
TACCTTAATCAACCAACCTT+TGG 0.351902 2.1:+49598412 None:intergenic
ATCTTTCAAGAAGATATAAT+AGG 0.368485 2.1:-49598149 MS.gene91760:CDS
ATAAATGGGGAACTATTTCA+TGG 0.373052 2.1:-49598028 MS.gene91760:CDS
TAGTTGTAACTTCTCCGTTT+CGG 0.375415 2.1:-49597739 MS.gene91760:CDS
CTTCTTCTTCCTCCAAAGGT+TGG 0.385229 2.1:-49598424 MS.gene91760:CDS
TAAAACATGGTGATGAGAAA+TGG 0.387502 2.1:-49598121 MS.gene91760:CDS
ACACTACTCCAAGGAGAGTT+AGG 0.387864 2.1:+49598194 None:intergenic
CGATGATATTATTGTGTTCA+AGG 0.406745 2.1:-49598069 MS.gene91760:CDS
CTCAACTCCCTACAGAACTA+TGG 0.406799 2.1:-49598670 MS.gene91760:CDS
AAAGAATTAATTGGATATCA+AGG 0.411865 2.1:-49597714 MS.gene91760:CDS
GAATAAGATAAATGGTTGAT+TGG 0.414572 2.1:+49598489 None:intergenic
TGTTCTATCCTAACTCTCCT+TGG 0.425110 2.1:-49598202 MS.gene91760:CDS
CTTGCATCGACAACACTTTG+TGG 0.427663 2.1:-49597608 MS.gene91760:CDS
CTATAAGTTGGATGAAGAAT+GGG 0.428624 2.1:-49597814 MS.gene91760:CDS
CTTAATCAACCAACCTTTGG+AGG 0.434359 2.1:+49598415 None:intergenic
CCAACATGTTCCATATCATC+AGG 0.435629 2.1:+49598303 None:intergenic
TTGGTTGAGGTAGTTGTTTG+TGG 0.440994 2.1:+49598508 None:intergenic
ACAGAACTATGGCCTAAGAT+AGG 0.442853 2.1:-49598659 MS.gene91760:CDS
TCTTCTTCTTCTTCCTCCAA+AGG 0.442881 2.1:-49598428 MS.gene91760:CDS
AACATTTGGTAGAATCTTGT+GGG 0.446835 2.1:-49597941 MS.gene91760:CDS
TCTATAAGTTGGATGAAGAA+TGG 0.449108 2.1:-49597815 MS.gene91760:CDS
AATTAATTCTTTAGCCGAAA+CGG 0.462912 2.1:+49597725 None:intergenic
GATAAATGGTTGATTGGTTG+AGG 0.469906 2.1:+49598495 None:intergenic
AATTATCATATCCTCTTAGC+AGG 0.479331 2.1:-49598337 MS.gene91760:CDS
ATCTTAGGCCATAGTTCTGT+AGG 0.489468 2.1:+49598662 None:intergenic
GGAGAATTTGGAAGAGAATG+AGG 0.493609 2.1:+49598566 None:intergenic
AAACATTTGGTAGAATCTTG+TGG 0.496494 2.1:-49597942 MS.gene91760:CDS
AGAAGGTGCTAAACTGGAGT+TGG 0.502318 2.1:+49598448 None:intergenic
GGTATTTGCAAAGGAAAAGA+AGG 0.529929 2.1:+49598545 None:intergenic
TAGAACACAACTTTCTTCAC+AGG 0.530312 2.1:+49598218 None:intergenic
TTTGTGGAGATGTTGATGCC+AGG 0.530799 2.1:+49598524 None:intergenic
ACAACTAGGGCTCAAAATGA+AGG 0.531781 2.1:+49597755 None:intergenic
CCAATCTACTTTCTCATCCA+TGG 0.539558 2.1:+49598694 None:intergenic
CTCTCCTTGGAGTAGTGTTG+AGG 0.544030 2.1:-49598189 MS.gene91760:CDS
ATTTGGAAGAGAATGAGGAA+TGG 0.545115 2.1:+49598571 None:intergenic
ATGTTTCAAAGTCTATAAGT+TGG 0.546929 2.1:-49597826 MS.gene91760:CDS
CACAAAGTGTTGTCGATGCA+AGG 0.554548 2.1:+49597609 None:intergenic
CCTGATGATATGGAACATGT+TGG 0.555978 2.1:-49598303 MS.gene91760:CDS
AACGTGAGAAGGAACTATGT+TGG 0.556354 2.1:-49597882 MS.gene91760:CDS
CCAAAATCGATACGAGGTTG+TGG 0.558139 2.1:-49597850 MS.gene91760:CDS
GATGATATTATTGTGTTCAA+GGG 0.560408 2.1:-49598068 MS.gene91760:CDS
AAGAATTAATTGGATATCAA+GGG 0.561141 2.1:-49597713 MS.gene91760:CDS
CCATGGATGAGAAAGTAGAT+TGG 0.566456 2.1:-49598694 MS.gene91760:CDS
GAAGTGTTGTTCCTGCTAAG+AGG 0.569462 2.1:+49598326 None:intergenic
TCTTAGGCCATAGTTCTGTA+GGG 0.578657 2.1:+49598663 None:intergenic
TATAAGTTGGATGAAGAATG+GGG 0.579436 2.1:-49597813 MS.gene91760:CDS
GAAACGGAGAAGTTACAACT+AGG 0.595840 2.1:+49597741 None:intergenic
ATAGGATTCAACAAACTCAA+AGG 0.597227 2.1:+49598371 None:intergenic
GTCTTCTAACATCTCTGCCG+AGG 0.598711 2.1:+49597576 None:intergenic
TTGGAGGAAGAAGAAGAAGA+AGG 0.602855 2.1:+49598431 None:intergenic
TTGATGCCAGGTATTTGCAA+AGG 0.610176 2.1:+49598536 None:intergenic
ACGAAAGCGAAAACGTGAGA+AGG 0.630900 2.1:-49597893 MS.gene91760:CDS
CTTTGTGGTGTCATGCACCT+CGG 0.641274 2.1:-49597593 MS.gene91760:CDS
GAGTTGGAACTTGCATCAGT+TGG 0.641493 2.1:+49598464 None:intergenic
CAACATGTTCCATATCATCA+GGG 0.642106 2.1:+49598304 None:intergenic
CAATCCTCAACACTACTCCA+AGG 0.642424 2.1:+49598185 None:intergenic
TTTCCAAAACCACACAAAGG+AGG 0.646363 2.1:+49597969 None:intergenic
AAACGGAGAAGTTACAACTA+GGG 0.649640 2.1:+49597742 None:intergenic
ATAATAGGATTCATAAAACA+TGG 0.653150 2.1:-49598134 MS.gene91760:CDS
TTGTTTCCAAAACCACACAA+AGG 0.670548 2.1:+49597966 None:intergenic
ATAAGTTGGATGAAGAATGG+GGG 0.674708 2.1:-49597812 MS.gene91760:CDS
AAGACACCAAAATCGATACG+AGG 0.748663 2.1:-49597856 MS.gene91760:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAAAATTGAAAAGATTAA+AGG - chr2.1:49598022-49598041 MS.gene91760:CDS 10.0%
!! AAAGAATTAATTGGATATCA+AGG - chr2.1:49598559-49598578 MS.gene91760:CDS 20.0%
!! AAGAATTAATTGGATATCAA+GGG - chr2.1:49598560-49598579 MS.gene91760:CDS 20.0%
!! ATAATAGGATTCATAAAACA+TGG - chr2.1:49598139-49598158 MS.gene91760:CDS 20.0%
!! ATCTTTCAAGAAGATATAAT+AGG - chr2.1:49598124-49598143 MS.gene91760:CDS 20.0%
!! TAATGTTCGTATGTATAATT+TGG - chr2.1:49598609-49598628 MS.gene91760:CDS 20.0%
!!! AGGATATGATAATTTTCTTT+CGG + chr2.1:49597930-49597949 None:intergenic 20.0%
!!! AGTTTTATGTTACTGATAAA+TGG - chr2.1:49598230-49598249 MS.gene91760:CDS 20.0%
!!! GTTTTATGTTACTGATAAAT+GGG - chr2.1:49598231-49598250 MS.gene91760:CDS 20.0%
!!! TTTTATGTTACTGATAAATG+GGG - chr2.1:49598232-49598251 MS.gene91760:CDS 20.0%
! AATTAATTCTTTAGCCGAAA+CGG + chr2.1:49598551-49598570 None:intergenic 25.0%
! AGTTGGTTGAATAAGATAAA+TGG + chr2.1:49597795-49597814 None:intergenic 25.0%
! ATGTTTCAAAGTCTATAAGT+TGG - chr2.1:49598447-49598466 MS.gene91760:CDS 25.0%
! GAATAAGATAAATGGTTGAT+TGG + chr2.1:49597787-49597806 None:intergenic 25.0%
! GATGATATTATTGTGTTCAA+GGG - chr2.1:49598205-49598224 MS.gene91760:CDS 25.0%
!! TCAAGATATTTTCCTATCTT+AGG + chr2.1:49597629-49597648 None:intergenic 25.0%
!!! TTTTGGAAACAAGAAACATT+TGG - chr2.1:49598318-49598337 MS.gene91760:CDS 25.0%
AAACATTTGGTAGAATCTTG+TGG - chr2.1:49598331-49598350 MS.gene91760:CDS 30.0%
AAAGGAAAAGAAGGAGAATT+TGG + chr2.1:49597722-49597741 None:intergenic 30.0%
AACATTTGGTAGAATCTTGT+GGG - chr2.1:49598332-49598351 MS.gene91760:CDS 30.0%
AATTATCATATCCTCTTAGC+AGG - chr2.1:49597936-49597955 MS.gene91760:CDS 30.0%
ATAAATGGGGAACTATTTCA+TGG - chr2.1:49598245-49598264 MS.gene91760:CDS 30.0%
ATAGGATTCAACAAACTCAA+AGG + chr2.1:49597905-49597924 None:intergenic 30.0%
ATGGAACATGTTGGATTATA+GGG - chr2.1:49597979-49597998 MS.gene91760:CDS 30.0%
CGATGATATTATTGTGTTCA+AGG - chr2.1:49598204-49598223 MS.gene91760:CDS 30.0%
GTTTCGGCTAAAGAATTAAT+TGG - chr2.1:49598550-49598569 MS.gene91760:CDS 30.0%
TATGGAACATGTTGGATTAT+AGG - chr2.1:49597978-49597997 MS.gene91760:CDS 30.0%
! CTATAAGTTGGATGAAGAAT+GGG - chr2.1:49598459-49598478 MS.gene91760:CDS 30.0%
! GATAATTTTCTTTCGGTGAT+AGG + chr2.1:49597923-49597942 None:intergenic 30.0%
! TAAAACATGGTGATGAGAAA+TGG - chr2.1:49598152-49598171 MS.gene91760:CDS 30.0%
! TATAAGTTGGATGAAGAATG+GGG - chr2.1:49598460-49598479 MS.gene91760:CDS 30.0%
! TCTATAAGTTGGATGAAGAA+TGG - chr2.1:49598458-49598477 MS.gene91760:CDS 30.0%
AAACGGAGAAGTTACAACTA+GGG + chr2.1:49598534-49598553 None:intergenic 35.0%
AGGGAATTGCATCTACTTTA+AGG - chr2.1:49598579-49598598 MS.gene91760:CDS 35.0%
ATTTGGAAGAGAATGAGGAA+TGG + chr2.1:49597705-49597724 None:intergenic 35.0%
CAACATGTTCCATATCATCA+GGG + chr2.1:49597972-49597991 None:intergenic 35.0%
GGTATTTGCAAAGGAAAAGA+AGG + chr2.1:49597731-49597750 None:intergenic 35.0%
TACCTTAATCAACCAACCTT+TGG + chr2.1:49597864-49597883 None:intergenic 35.0%
TAGAACACAACTTTCTTCAC+AGG + chr2.1:49598058-49598077 None:intergenic 35.0%
TAGTTGTAACTTCTCCGTTT+CGG - chr2.1:49598534-49598553 MS.gene91760:CDS 35.0%
TTGTTTCCAAAACCACACAA+AGG + chr2.1:49598310-49598329 None:intergenic 35.0%
! ATAAGTTGGATGAAGAATGG+GGG - chr2.1:49598461-49598480 MS.gene91760:CDS 35.0%
! GATAAATGGTTGATTGGTTG+AGG + chr2.1:49597781-49597800 None:intergenic 35.0%
! TCTTTTCCTTTGCAAATACC+TGG - chr2.1:49597731-49597750 MS.gene91760:CDS 35.0%
AACGTGAGAAGGAACTATGT+TGG - chr2.1:49598391-49598410 MS.gene91760:CDS 40.0%
AAGACACCAAAATCGATACG+AGG - chr2.1:49598417-49598436 MS.gene91760:CDS 40.0%
ACAACACTTCCCTGATGATA+TGG - chr2.1:49597960-49597979 MS.gene91760:CDS 40.0%
ACAACTAGGGCTCAAAATGA+AGG + chr2.1:49598521-49598540 None:intergenic 40.0%
ACAGAACTATGGCCTAAGAT+AGG - chr2.1:49597614-49597633 MS.gene91760:CDS 40.0%
CCAACATGTTCCATATCATC+AGG + chr2.1:49597973-49597992 None:intergenic 40.0%
CCTGATGATATGGAACATGT+TGG - chr2.1:49597970-49597989 MS.gene91760:CDS 40.0%
CTTAATCAACCAACCTTTGG+AGG + chr2.1:49597861-49597880 None:intergenic 40.0%
GAAACGGAGAAGTTACAACT+AGG + chr2.1:49598535-49598554 None:intergenic 40.0%
GGAGAATTTGGAAGAGAATG+AGG + chr2.1:49597710-49597729 None:intergenic 40.0%
TCTTCTTCTTCTTCCTCCAA+AGG - chr2.1:49597845-49597864 MS.gene91760:CDS 40.0%
TGTTCTATCCTAACTCTCCT+TGG - chr2.1:49598071-49598090 MS.gene91760:CDS 40.0%
TTGATGCCAGGTATTTGCAA+AGG + chr2.1:49597740-49597759 None:intergenic 40.0%
TTGGAGGAAGAAGAAGAAGA+AGG + chr2.1:49597845-49597864 None:intergenic 40.0%
TTGGTTGAGGTAGTTGTTTG+TGG + chr2.1:49597768-49597787 None:intergenic 40.0%
TTTCCAAAACCACACAAAGG+AGG + chr2.1:49598307-49598326 None:intergenic 40.0%
! ATCTTAGGCCATAGTTCTGT+AGG + chr2.1:49597614-49597633 None:intergenic 40.0%
! CAATTTTCACCTCCTTTGTG+TGG - chr2.1:49598295-49598314 MS.gene91760:CDS 40.0%
! CTCCAAAGGTTGGTTGATTA+AGG - chr2.1:49597859-49597878 MS.gene91760:CDS 40.0%
! TCTTAGGCCATAGTTCTGTA+GGG + chr2.1:49597613-49597632 None:intergenic 40.0%
!! AGAAGAAGAAGGTGCTAAAC+TGG + chr2.1:49597834-49597853 None:intergenic 40.0%
ACACTACTCCAAGGAGAGTT+AGG + chr2.1:49598082-49598101 None:intergenic 45.0%
ACGAAAGCGAAAACGTGAGA+AGG - chr2.1:49598380-49598399 MS.gene91760:CDS 45.0%
CAATCCTCAACACTACTCCA+AGG + chr2.1:49598091-49598110 None:intergenic 45.0%
CCAAAATCGATACGAGGTTG+TGG - chr2.1:49598423-49598442 MS.gene91760:CDS 45.0%
CTCAACTCCCTACAGAACTA+TGG - chr2.1:49597603-49597622 MS.gene91760:CDS 45.0%
CTTCTTCTTCCTCCAAAGGT+TGG - chr2.1:49597849-49597868 MS.gene91760:CDS 45.0%
GAGTTGGAACTTGCATCAGT+TGG + chr2.1:49597812-49597831 None:intergenic 45.0%
GGATGAAGAATGGGGGAAAT+GGG - chr2.1:49598468-49598487 MS.gene91760:CDS 45.0%
TGGATGAAGAATGGGGGAAA+TGG - chr2.1:49598467-49598486 MS.gene91760:CDS 45.0%
TTTGTGGAGATGTTGATGCC+AGG + chr2.1:49597752-49597771 None:intergenic 45.0%
! CTTGCATCGACAACACTTTG+TGG - chr2.1:49598665-49598684 MS.gene91760:CDS 45.0%
! TCACCTCCTTTGTGTGGTTT+TGG - chr2.1:49598301-49598320 MS.gene91760:CDS 45.0%
!! AGAAGGTGCTAAACTGGAGT+TGG + chr2.1:49597828-49597847 None:intergenic 45.0%
!! CACAAAGTGTTGTCGATGCA+AGG + chr2.1:49598667-49598686 None:intergenic 45.0%
!! GAAGTGTTGTTCCTGCTAAG+AGG + chr2.1:49597950-49597969 None:intergenic 45.0%
!!! CCACAACCTCGTATCGATTT+TGG + chr2.1:49598426-49598445 None:intergenic 45.0%
CTCTCCTTGGAGTAGTGTTG+AGG - chr2.1:49598084-49598103 MS.gene91760:CDS 50.0%
!! CTTTGTGGTGTCATGCACCT+CGG - chr2.1:49598680-49598699 MS.gene91760:CDS 50.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 49597581 49598714 49597581 ID=MS.gene91760
chr2.1 mRNA 49597581 49598714 49597581 ID=MS.gene91760.t1;Parent=MS.gene91760
chr2.1 exon 49597581 49598714 49597581 ID=MS.gene91760.t1.exon1;Parent=MS.gene91760.t1
chr2.1 CDS 49597581 49598714 49597581 ID=cds.MS.gene91760.t1;Parent=MS.gene91760.t1
Gene Sequence

>MS.gene91760

ATGGATGAGAAAGTAGATTGGTCTCAACTCCCTACAGAACTATGGCCTAAGATAGGAAAATATCTTGATAATCACATAGATGTTCTCAGATTTCGCAGTGTATGCGAATCATTTCGTTCTTCCATTCCTCATTCTCTTCCAAATTCTCCTTCTTTTCCTTTGCAAATACCTGGCATCAACATCTCCACAAACAACTACCTCAACCAATCAACCATTTATCTTATTCAACCAACTGATGCAAGTTCCAACTCCAGTTTAGCACCTTCTTCTTCTTCTTCCTCCAAAGGTTGGTTGATTAAGGTAGAAGAATCTAAGAATCAACCTTTGAGTTTGTTGAATCCTATCACCGAAAGAAAATTATCATATCCTCTTAGCAGGAACAACACTTCCCTGATGATATGGAACATGTTGGATTATAGGGTCATTGAGCTATGCAAATCATATAAAATTGAAAAGATTAAAGGTTTTGCAAGTCCTGTGAAGAAAGTTGTGTTCTATCCTAACTCTCCTTGGAGTAGTGTTGAGGATTGTGTTTCTTGTTGTATCTTTCAAGAAGATATAATAGGATTCATAAAACATGGTGATGAGAAATGGAAACTTGTCGATGAAAACAATTTCTACTACGATGATATTATTGTGTTCAAGGGTCAGTTTTATGTTACTGATAAATGGGGAACTATTTCATGGATTGATATTTCTTCTTTGAAGTTGATACAATTTTCACCTCCTTTGTGTGGTTTTGGAAACAAGAAACATTTGGTAGAATCTTGTGGGAATCTTTATGTCGTTGATAGATACTACGAAAGCGAAAACGTGAGAAGGAACTATGTTGGAAGAAGACACCAAAATCGATACGAGGTTGTGGAATGTTTCAAAGTCTATAAGTTGGATGAAGAATGGGGGAAATGGGTTGATGTGAAAAATTTGAAAGATAGAGCCTTCATTTTGAGCCCTAGTTGTAACTTCTCCGTTTCGGCTAAAGAATTAATTGGATATCAAGGGAATTGCATCTACTTTAAGGATTCTTTTAATGTTCGTATGTATAATTTGGACGATCATAGAATTACTATTGTTGATTTTAATCCTTGCATCGACAACACTTTGTGGTGTCATGCACCTCGGCAGAGATGTTAG
Protein sequence

>MS.gene91760.t1

MDEKVDWSQLPTELWPKIGKYLDNHIDVLRFRSVCESFRSSIPHSLPNSPSFPLQIPGINISTNNYLNQSTIYLIQPTDASSNSSLAPSSSSSSKGWLIKVEESKNQPLSLLNPITERKLSYPLSRNNTSLMIWNMLDYRVIELCKSYKIEKIKGFASPVKKVVFYPNSPWSSVEDCVSCCIFQEDIIGFIKHGDEKWKLVDENNFYYDDIIVFKGQFYVTDKWGTISWIDISSLKLIQFSPPLCGFGNKKHLVESCGNLYVVDRYYESENVRRNYVGRRHQNRYEVVECFKVYKLDEEWGKWVDVKNLKDRAFILSPSCNFSVSAKELIGYQGNCIYFKDSFNVRMYNLDDHRITIVDFNPCIDNTLWCHAPRQRC