Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene025209.t1 | KEH37569.1 | 65.6 | 372 | 23 | 2 | 1 | 267 | 1 | 372 | 1.40E-133 | 485.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene025209.t1 | Q9SHX9 | 35.1 | 171 | 108 | 2 | 79 | 249 | 174 | 341 | 8.3e-23 | 109.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene025209.t1 | A0A072V678 | 65.6 | 372 | 23 | 2 | 1 | 267 | 1 | 372 | 9.8e-134 | 485.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene44190 | MS.gene025209 | PPI |
MS.gene049886 | MS.gene025209 | PPI |
MS.gene23495 | MS.gene025209 | PPI |
MS.gene97013 | MS.gene025209 | PPI |
MS.gene012160 | MS.gene025209 | PPI |
MS.gene66307 | MS.gene025209 | PPI |
MS.gene012159 | MS.gene025209 | PPI |
MS.gene025209 | MS.gene017581 | PPI |
MS.gene025209 | MS.gene023531 | PPI |
MS.gene64423 | MS.gene025209 | PPI |
MS.gene017582 | MS.gene025209 | PPI |
MS.gene025209 | MS.gene018718 | PPI |
MS.gene037197 | MS.gene025209 | PPI |
MS.gene30094 | MS.gene025209 | PPI |
MS.gene91760 | MS.gene025209 | PPI |
MS.gene023531 | MS.gene025209 | PPI |
MS.gene28903 | MS.gene025209 | PPI |
MS.gene23497 | MS.gene025209 | PPI |
MS.gene39445 | MS.gene025209 | PPI |
MS.gene28904 | MS.gene025209 | PPI |
MS.gene025209 | MS.gene017582 | PPI |
MS.gene025209 | MS.gene39445 | PPI |
MS.gene025209 | MS.gene064059 | PPI |
MS.gene025209 | MS.gene08770 | PPI |
MS.gene44191 | MS.gene025209 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene025209.t1 | MTR_2g041510 | 92.887 | 239 | 15 | 1 | 31 | 267 | 134 | 372 | 8.57e-164 | 459 |
MS.gene025209.t1 | MTR_2g041510 | 92.887 | 239 | 15 | 1 | 31 | 267 | 154 | 392 | 1.12e-163 | 459 |
MS.gene025209.t1 | MTR_8g074610 | 77.731 | 238 | 51 | 2 | 31 | 267 | 161 | 397 | 3.68e-135 | 387 |
MS.gene025209.t1 | MTR_8g074640 | 75.949 | 237 | 56 | 1 | 31 | 267 | 142 | 377 | 8.25e-129 | 370 |
MS.gene025209.t1 | MTR_4g088925 | 34.553 | 246 | 124 | 8 | 31 | 253 | 141 | 372 | 2.04e-31 | 120 |
MS.gene025209.t1 | MTR_8g085760 | 38.356 | 219 | 99 | 8 | 61 | 253 | 167 | 375 | 8.67e-31 | 118 |
MS.gene025209.t1 | MTR_7g096720 | 45.283 | 159 | 66 | 4 | 95 | 240 | 209 | 359 | 1.18e-29 | 115 |
MS.gene025209.t1 | MTR_5g079830 | 34.694 | 196 | 108 | 2 | 60 | 245 | 150 | 335 | 6.02e-26 | 105 |
MS.gene025209.t1 | MTR_6g092570 | 33.617 | 235 | 128 | 5 | 31 | 253 | 125 | 343 | 2.68e-25 | 103 |
MS.gene025209.t1 | MTR_3g037710 | 30.709 | 254 | 136 | 7 | 6 | 246 | 17 | 243 | 2.23e-21 | 90.9 |
MS.gene025209.t1 | MTR_3g030050 | 30.712 | 267 | 144 | 8 | 31 | 259 | 151 | 414 | 7.64e-20 | 88.6 |
MS.gene025209.t1 | MTR_6g027100 | 36.022 | 186 | 99 | 6 | 80 | 259 | 198 | 369 | 2.09e-19 | 87.4 |
MS.gene025209.t1 | MTR_1g026850 | 35.583 | 163 | 92 | 4 | 71 | 231 | 172 | 323 | 5.13e-19 | 85.9 |
MS.gene025209.t1 | MTR_6g027040 | 34.409 | 186 | 102 | 6 | 80 | 259 | 198 | 369 | 5.52e-18 | 82.8 |
MS.gene025209.t1 | MTR_6g018390 | 34.225 | 187 | 99 | 5 | 80 | 259 | 190 | 359 | 5.80e-18 | 82.8 |
MS.gene025209.t1 | MTR_4g125090 | 38.843 | 121 | 64 | 1 | 90 | 210 | 203 | 313 | 1.56e-17 | 80.9 |
MS.gene025209.t1 | MTR_2g047180 | 31.053 | 190 | 105 | 5 | 80 | 259 | 186 | 359 | 4.68e-17 | 80.1 |
MS.gene025209.t1 | MTR_1g007260 | 31.667 | 180 | 100 | 5 | 82 | 252 | 209 | 374 | 4.10e-16 | 77.8 |
MS.gene025209.t1 | MTR_3g029650 | 35.099 | 151 | 88 | 3 | 79 | 229 | 174 | 314 | 5.04e-16 | 78.2 |
MS.gene025209.t1 | MTR_3g029650 | 28.249 | 177 | 103 | 4 | 85 | 246 | 567 | 734 | 1.81e-12 | 67.4 |
MS.gene025209.t1 | MTR_3g030360 | 31.492 | 181 | 85 | 5 | 84 | 259 | 198 | 344 | 4.79e-15 | 74.3 |
MS.gene025209.t1 | MTR_3g030480 | 33.526 | 173 | 88 | 5 | 84 | 248 | 184 | 337 | 9.43e-15 | 73.6 |
MS.gene025209.t1 | MTR_6g018360 | 34.395 | 157 | 87 | 6 | 80 | 231 | 190 | 335 | 1.11e-14 | 73.6 |
MS.gene025209.t1 | MTR_6g018315 | 31.472 | 197 | 112 | 7 | 80 | 262 | 175 | 362 | 1.53e-14 | 73.2 |
MS.gene025209.t1 | MTR_1g016540 | 32.240 | 183 | 94 | 7 | 95 | 259 | 2 | 172 | 1.82e-14 | 70.1 |
MS.gene025209.t1 | MTR_3g030380 | 31.609 | 174 | 90 | 5 | 84 | 248 | 186 | 339 | 3.76e-14 | 71.6 |
MS.gene025209.t1 | MTR_3g030440 | 32.759 | 174 | 90 | 5 | 84 | 249 | 185 | 339 | 4.09e-14 | 71.6 |
MS.gene025209.t1 | MTR_3g029900 | 32.948 | 173 | 80 | 6 | 88 | 257 | 297 | 436 | 5.28e-14 | 71.6 |
MS.gene025209.t1 | MTR_3g029840 | 34.483 | 145 | 72 | 4 | 88 | 231 | 197 | 319 | 5.34e-14 | 71.2 |
MS.gene025209.t1 | MTR_5g042230 | 35.256 | 156 | 87 | 5 | 80 | 233 | 13 | 156 | 6.71e-14 | 68.9 |
MS.gene025209.t1 | MTR_6g018400 | 30.409 | 171 | 98 | 3 | 82 | 251 | 194 | 344 | 2.54e-13 | 69.3 |
MS.gene025209.t1 | MTR_3g058460 | 34.591 | 159 | 93 | 6 | 78 | 231 | 181 | 333 | 3.36e-13 | 68.9 |
MS.gene025209.t1 | MTR_3g029950 | 33.333 | 174 | 84 | 8 | 88 | 253 | 197 | 346 | 4.24e-13 | 68.9 |
MS.gene025209.t1 | MTR_3g029750 | 34.161 | 161 | 82 | 6 | 85 | 240 | 211 | 352 | 1.04e-12 | 67.8 |
MS.gene025209.t1 | MTR_3g029670 | 31.183 | 186 | 95 | 7 | 85 | 256 | 211 | 377 | 2.09e-12 | 66.6 |
MS.gene025209.t1 | MTR_3g030080 | 30.065 | 153 | 90 | 3 | 80 | 231 | 190 | 326 | 4.25e-12 | 65.9 |
MS.gene025209.t1 | MTR_3g114990 | 28.395 | 162 | 106 | 5 | 78 | 234 | 203 | 359 | 8.44e-12 | 65.1 |
MS.gene025209.t1 | MTR_3g091990 | 30.270 | 185 | 106 | 6 | 85 | 258 | 206 | 378 | 1.11e-11 | 64.7 |
MS.gene025209.t1 | MTR_3g029640 | 28.495 | 186 | 101 | 6 | 63 | 246 | 179 | 334 | 4.19e-11 | 62.8 |
MS.gene025209.t1 | MTR_3g029920 | 32.796 | 186 | 97 | 7 | 80 | 259 | 196 | 359 | 6.34e-11 | 62.4 |
MS.gene025209.t1 | MTR_3g029620 | 29.697 | 165 | 96 | 5 | 84 | 246 | 197 | 343 | 8.62e-11 | 62.0 |
MS.gene025209.t1 | MTR_7g096760 | 43.434 | 99 | 37 | 4 | 115 | 201 | 2 | 93 | 8.76e-11 | 58.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene025209.t1 | AT1G65770 | 35.976 | 164 | 101 | 3 | 86 | 249 | 182 | 341 | 2.18e-24 | 100 |
MS.gene025209.t1 | AT1G44080 | 36.872 | 179 | 96 | 5 | 82 | 251 | 158 | 328 | 1.29e-21 | 92.8 |
MS.gene025209.t1 | AT4G35733 | 34.483 | 174 | 98 | 4 | 83 | 248 | 176 | 341 | 1.42e-21 | 92.8 |
MS.gene025209.t1 | AT2G26160 | 33.333 | 216 | 113 | 8 | 32 | 236 | 128 | 323 | 9.73e-21 | 90.1 |
MS.gene025209.t1 | AT2G17030 | 34.545 | 165 | 96 | 6 | 85 | 242 | 192 | 351 | 1.31e-19 | 87.8 |
MS.gene025209.t1 | AT3G25750 | 32.955 | 176 | 95 | 5 | 82 | 246 | 178 | 341 | 1.27e-17 | 81.6 |
MS.gene025209.t1 | AT3G25750 | 33.143 | 175 | 94 | 5 | 83 | 246 | 165 | 327 | 1.88e-17 | 81.3 |
MS.gene025209.t1 | AT2G17036 | 32.692 | 156 | 98 | 4 | 100 | 250 | 205 | 358 | 3.78e-16 | 77.8 |
MS.gene025209.t1 | AT2G17036 | 32.692 | 156 | 98 | 4 | 100 | 250 | 206 | 359 | 4.13e-16 | 77.8 |
MS.gene025209.t1 | AT1G65740 | 34.177 | 158 | 93 | 5 | 97 | 248 | 200 | 352 | 9.57e-16 | 76.6 |
MS.gene025209.t1 | AT1G57906 | 32.121 | 165 | 75 | 5 | 86 | 218 | 67 | 226 | 3.63e-14 | 70.5 |
MS.gene025209.t1 | AT2G17690 | 27.523 | 218 | 100 | 6 | 88 | 248 | 189 | 405 | 4.67e-12 | 65.9 |
MS.gene025209.t1 | AT1G65760 | 34.579 | 107 | 66 | 2 | 142 | 248 | 240 | 342 | 6.75e-12 | 65.1 |
MS.gene025209.t1 | AT2G16290 | 31.667 | 180 | 98 | 9 | 88 | 253 | 216 | 384 | 4.21e-11 | 63.2 |
Find 49 sgRNAs with CRISPR-Local
Find 85 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGGGAATTGCATCTACTTTA+AGG | 0.156851 | 2.2:+46256968 | MS.gene025209:CDS |
TATAAAATTGAAAAGATTAA+AGG | 0.167135 | 2.2:+46256411 | MS.gene025209:CDS |
TAATGTTCGTATGTATAATT+TGG | 0.171010 | 2.2:+46256998 | MS.gene025209:CDS |
GTTTCGGCTAAAGAATTAAT+TGG | 0.188705 | 2.2:+46256939 | MS.gene025209:CDS |
TCACCTCCTTTGTGTGGTTT+TGG | 0.214421 | 2.2:+46256690 | MS.gene025209:CDS |
ATCTTTCAAGAAGATATAAT+AGG | 0.368485 | 2.2:+46256513 | MS.gene025209:CDS |
ATAAATGGGGAACTATTTCA+TGG | 0.373052 | 2.2:+46256634 | MS.gene025209:CDS |
TAGTTGTAACTTCTCCGTTT+CGG | 0.375415 | 2.2:+46256923 | MS.gene025209:CDS |
TAAAACATGGTGATGAGAAA+TGG | 0.387502 | 2.2:+46256541 | MS.gene025209:CDS |
ACACTACTCCAAGGAGAGTT+AGG | 0.387864 | 2.2:-46256468 | None:intergenic |
CGATGATATTATTGTGTTCA+AGG | 0.406745 | 2.2:+46256593 | MS.gene025209:CDS |
CTCAACTCCCTACAGAACTA+TGG | 0.406799 | 2.2:+46255999 | MS.gene025209:CDS |
AAAGAATTAATTGGATATCA+AGG | 0.411865 | 2.2:+46256948 | MS.gene025209:CDS |
TGTTCTATCCTAACTCTCCT+TGG | 0.425110 | 2.2:+46256460 | MS.gene025209:CDS |
CTTGCATCGACAACACTTTG+TGG | 0.427663 | 2.2:+46257054 | MS.gene025209:CDS |
CTATAAGTTGGATGAAGAAT+GGG | 0.428624 | 2.2:+46256848 | MS.gene025209:CDS |
AACATTTGGTGGAATCTTGT+GGG | 0.442266 | 2.2:+46256721 | MS.gene025209:CDS |
ACAGAACTATGGCCTAAGAT+AGG | 0.442853 | 2.2:+46256010 | MS.gene025209:CDS |
TCTATAAGTTGGATGAAGAA+TGG | 0.449108 | 2.2:+46256847 | MS.gene025209:CDS |
AATTAATTCTTTAGCCGAAA+CGG | 0.462912 | 2.2:-46256937 | None:intergenic |
CCACAACCATGTATCGATCT+TGG | 0.479712 | 2.2:-46256812 | None:intergenic |
AAACATTTGGTGGAATCTTG+TGG | 0.483180 | 2.2:+46256720 | MS.gene025209:CDS |
ATCTTAGGCCATAGTTCTGT+AGG | 0.489468 | 2.2:-46256007 | None:intergenic |
TAGAACACAACTTTCTTCAC+AGG | 0.530312 | 2.2:-46256444 | None:intergenic |
CCAATCTACTTTGTCATCCA+TGG | 0.530503 | 2.2:-46255975 | None:intergenic |
GTGTTTCAAAGTCTATAAGT+TGG | 0.530775 | 2.2:+46256836 | MS.gene025209:CDS |
ACAACTAGGGCTCAAAATGA+AGG | 0.531781 | 2.2:-46256907 | None:intergenic |
CCATGGATGACAAAGTAGAT+TGG | 0.533654 | 2.2:+46255975 | None:intergenic |
CTCTCCTTGGAGTAGTGTTG+AGG | 0.544030 | 2.2:+46256473 | MS.gene025209:CDS |
TGGAAACAAGAAACATTTGG+TGG | 0.554210 | 2.2:+46256710 | MS.gene025209:CDS |
CACAAAGTGTTGTCGATGCA+AGG | 0.554548 | 2.2:-46257053 | None:intergenic |
AACGTGAGAAGGAACTATGT+TGG | 0.556354 | 2.2:+46256780 | MS.gene025209:CDS |
GATGATATTATTGTGTTCAA+GGG | 0.560408 | 2.2:+46256594 | MS.gene025209:CDS |
AAGAATTAATTGGATATCAA+GGG | 0.561141 | 2.2:+46256949 | MS.gene025209:CDS |
TCTTAGGCCATAGTTCTGTA+GGG | 0.578657 | 2.2:-46256006 | None:intergenic |
TATAAGTTGGATGAAGAATG+GGG | 0.579436 | 2.2:+46256849 | MS.gene025209:CDS |
CCAAGATCGATACATGGTTG+TGG | 0.587033 | 2.2:+46256812 | MS.gene025209:CDS |
GAAACGGAGAAGTTACAACT+AGG | 0.595840 | 2.2:-46256921 | None:intergenic |
GTCTTCTAACATCTCTGCCG+AGG | 0.598711 | 2.2:-46257086 | None:intergenic |
ACGAAAGCGAAAACGTGAGA+AGG | 0.630900 | 2.2:+46256769 | MS.gene025209:CDS |
CTTTGTGGTGTCATGCACCT+CGG | 0.641274 | 2.2:+46257069 | MS.gene025209:CDS |
CAATCCTCAACACTACTCCA+AGG | 0.642424 | 2.2:-46256477 | None:intergenic |
TTTCCAAAACCACACAAAGG+AGG | 0.646363 | 2.2:-46256693 | None:intergenic |
AAACGGAGAAGTTACAACTA+GGG | 0.649640 | 2.2:-46256920 | None:intergenic |
ATAATAGGATTCATAAAACA+TGG | 0.653150 | 2.2:+46256528 | MS.gene025209:CDS |
GATGCAAGGATTAAAATCAA+CGG | 0.664976 | 2.2:-46257039 | None:intergenic |
TTGTTTCCAAAACCACACAA+AGG | 0.670548 | 2.2:-46256696 | None:intergenic |
ATAAGTTGGATGAAGAATGG+GGG | 0.674708 | 2.2:+46256850 | MS.gene025209:CDS |
AAGACACCAAGATCGATACA+TGG | 0.680495 | 2.2:+46256806 | MS.gene025209:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TATAAAATTGAAAAGATTAA+AGG | + | chr2.2:46256411-46256430 | MS.gene025209:CDS | 10.0% |
!! | AAAGAATTAATTGGATATCA+AGG | + | chr2.2:46256948-46256967 | MS.gene025209:CDS | 20.0% |
!! | AAGAATTAATTGGATATCAA+GGG | + | chr2.2:46256949-46256968 | MS.gene025209:CDS | 20.0% |
!! | ATAATAGGATTCATAAAACA+TGG | + | chr2.2:46256528-46256547 | MS.gene025209:CDS | 20.0% |
!! | ATCTTTCAAGAAGATATAAT+AGG | + | chr2.2:46256513-46256532 | MS.gene025209:CDS | 20.0% |
!! | TAATGTTCGTATGTATAATT+TGG | + | chr2.2:46256998-46257017 | MS.gene025209:CDS | 20.0% |
!!! | AGGATATGATAATTTTCTTT+CGG | - | chr2.2:46256319-46256338 | None:intergenic | 20.0% |
!!! | AGTTTTATGTTACTGATAAA+TGG | + | chr2.2:46256619-46256638 | MS.gene025209:CDS | 20.0% |
!!! | GTTTTATGTTACTGATAAAT+GGG | + | chr2.2:46256620-46256639 | MS.gene025209:CDS | 20.0% |
!!! | TTTTATGTTACTGATAAATG+GGG | + | chr2.2:46256621-46256640 | MS.gene025209:CDS | 20.0% |
! | AATTAATTCTTTAGCCGAAA+CGG | - | chr2.2:46256940-46256959 | None:intergenic | 25.0% |
! | AGTTGGTTGAATAAGATAAA+TGG | - | chr2.2:46256181-46256200 | None:intergenic | 25.0% |
! | GAATAAGATAAATGGTTGAT+TGG | - | chr2.2:46256173-46256192 | None:intergenic | 25.0% |
! | GATGATATTATTGTGTTCAA+GGG | + | chr2.2:46256594-46256613 | MS.gene025209:CDS | 25.0% |
!! | TCAAGATATTTTCCTATCTT+AGG | - | chr2.2:46256025-46256044 | None:intergenic | 25.0% |
!!! | TTTTGGAAACAAGAAACATT+TGG | + | chr2.2:46256707-46256726 | MS.gene025209:CDS | 25.0% |
AAAGGAAAAGAAGGAGAATT+TGG | - | chr2.2:46256108-46256127 | None:intergenic | 30.0% | |
AATTATCATATCCTCTTAGC+AGG | + | chr2.2:46256325-46256344 | MS.gene025209:intron | 30.0% | |
ATAAATGGGGAACTATTTCA+TGG | + | chr2.2:46256634-46256653 | MS.gene025209:CDS | 30.0% | |
ATAGGATTCAACAAACTCAA+AGG | - | chr2.2:46256294-46256313 | None:intergenic | 30.0% | |
ATGGAACATGTTGGATTATA+GGG | + | chr2.2:46256368-46256387 | MS.gene025209:intron | 30.0% | |
CGATGATATTATTGTGTTCA+AGG | + | chr2.2:46256593-46256612 | MS.gene025209:CDS | 30.0% | |
GATGCAAGGATTAAAATCAA+CGG | - | chr2.2:46257042-46257061 | None:intergenic | 30.0% | |
GTGTTTCAAAGTCTATAAGT+TGG | + | chr2.2:46256836-46256855 | MS.gene025209:CDS | 30.0% | |
GTTTCGGCTAAAGAATTAAT+TGG | + | chr2.2:46256939-46256958 | MS.gene025209:CDS | 30.0% | |
TATGGAACATGTTGGATTAT+AGG | + | chr2.2:46256367-46256386 | MS.gene025209:intron | 30.0% | |
! | CTATAAGTTGGATGAAGAAT+GGG | + | chr2.2:46256848-46256867 | MS.gene025209:CDS | 30.0% |
! | GATAATTTTCTTTCGGTGAT+AGG | - | chr2.2:46256312-46256331 | None:intergenic | 30.0% |
! | TAAAACATGGTGATGAGAAA+TGG | + | chr2.2:46256541-46256560 | MS.gene025209:CDS | 30.0% |
! | TATAAGTTGGATGAAGAATG+GGG | + | chr2.2:46256849-46256868 | MS.gene025209:CDS | 30.0% |
! | TCTATAAGTTGGATGAAGAA+TGG | + | chr2.2:46256847-46256866 | MS.gene025209:CDS | 30.0% |
AAACGGAGAAGTTACAACTA+GGG | - | chr2.2:46256923-46256942 | None:intergenic | 35.0% | |
AGGGAATTGCATCTACTTTA+AGG | + | chr2.2:46256968-46256987 | MS.gene025209:CDS | 35.0% | |
CAACATGTTCCATATCATCA+GGG | - | chr2.2:46256361-46256380 | None:intergenic | 35.0% | |
GAAGAAGAAGAAGAAGAAGA+AGG | - | chr2.2:46256231-46256250 | None:intergenic | 35.0% | |
GGTATTTGCAAAGGAAAAGA+AGG | - | chr2.2:46256117-46256136 | None:intergenic | 35.0% | |
TACCTTAATCAACCAACCTT+TGG | - | chr2.2:46256253-46256272 | None:intergenic | 35.0% | |
TAGAACACAACTTTCTTCAC+AGG | - | chr2.2:46256447-46256466 | None:intergenic | 35.0% | |
TAGTTGTAACTTCTCCGTTT+CGG | + | chr2.2:46256923-46256942 | MS.gene025209:CDS | 35.0% | |
TCTTCTTCTTCTTCTTCCAA+AGG | + | chr2.2:46256234-46256253 | MS.gene025209:intron | 35.0% | |
TGGAAACAAGAAACATTTGG+TGG | + | chr2.2:46256710-46256729 | MS.gene025209:CDS | 35.0% | |
TTGTTTCCAAAACCACACAA+AGG | - | chr2.2:46256699-46256718 | None:intergenic | 35.0% | |
! | AAACATTTGGTGGAATCTTG+TGG | + | chr2.2:46256720-46256739 | MS.gene025209:CDS | 35.0% |
! | AACATTTGGTGGAATCTTGT+GGG | + | chr2.2:46256721-46256740 | MS.gene025209:CDS | 35.0% |
! | ATAAGTTGGATGAAGAATGG+GGG | + | chr2.2:46256850-46256869 | MS.gene025209:CDS | 35.0% |
! | GATAAATGGTTGATTGGTTG+AGG | - | chr2.2:46256167-46256186 | None:intergenic | 35.0% |
! | TCTTTTCCTTTGCAAATACC+TGG | + | chr2.2:46256117-46256136 | MS.gene025209:intron | 35.0% |
! | TTCCAAAGGTTGGTTGATTA+AGG | + | chr2.2:46256248-46256267 | MS.gene025209:intron | 35.0% |
AACGTGAGAAGGAACTATGT+TGG | + | chr2.2:46256780-46256799 | MS.gene025209:CDS | 40.0% | |
AAGACACCAAGATCGATACA+TGG | + | chr2.2:46256806-46256825 | MS.gene025209:CDS | 40.0% | |
ACAACACTTCCCTGATGATA+TGG | + | chr2.2:46256349-46256368 | MS.gene025209:intron | 40.0% | |
ACAACTAGGGCTCAAAATGA+AGG | - | chr2.2:46256910-46256929 | None:intergenic | 40.0% | |
ACAGAACTATGGCCTAAGAT+AGG | + | chr2.2:46256010-46256029 | MS.gene025209:CDS | 40.0% | |
ATTTGGAAGAGAAGGAGGAA+CGG | - | chr2.2:46256091-46256110 | None:intergenic | 40.0% | |
CCAACATGTTCCATATCATC+AGG | - | chr2.2:46256362-46256381 | None:intergenic | 40.0% | |
CCTGATGATATGGAACATGT+TGG | + | chr2.2:46256359-46256378 | MS.gene025209:intron | 40.0% | |
CTTCTTCTTCTTCCAAAGGT+TGG | + | chr2.2:46256238-46256257 | MS.gene025209:intron | 40.0% | |
GAAACGGAGAAGTTACAACT+AGG | - | chr2.2:46256924-46256943 | None:intergenic | 40.0% | |
GAAGGAGAATTTGGAAGAGA+AGG | - | chr2.2:46256099-46256118 | None:intergenic | 40.0% | |
TGTTCTATCCTAACTCTCCT+TGG | + | chr2.2:46256460-46256479 | MS.gene025209:CDS | 40.0% | |
TTGATGCCAGGTATTTGCAA+AGG | - | chr2.2:46256126-46256145 | None:intergenic | 40.0% | |
TTGGTTGAGGTAGTTGTTTG+TGG | - | chr2.2:46256154-46256173 | None:intergenic | 40.0% | |
TTTCCAAAACCACACAAAGG+AGG | - | chr2.2:46256696-46256715 | None:intergenic | 40.0% | |
! | ATCTTAGGCCATAGTTCTGT+AGG | - | chr2.2:46256010-46256029 | None:intergenic | 40.0% |
! | CAATTTTCACCTCCTTTGTG+TGG | + | chr2.2:46256684-46256703 | MS.gene025209:CDS | 40.0% |
! | TCTTAGGCCATAGTTCTGTA+GGG | - | chr2.2:46256009-46256028 | None:intergenic | 40.0% |
!! | AGAAGAAGAAGGTGCTAAAC+TGG | - | chr2.2:46256220-46256239 | None:intergenic | 40.0% |
ACACTACTCCAAGGAGAGTT+AGG | - | chr2.2:46256471-46256490 | None:intergenic | 45.0% | |
ACGAAAGCGAAAACGTGAGA+AGG | + | chr2.2:46256769-46256788 | MS.gene025209:CDS | 45.0% | |
CAATCCTCAACACTACTCCA+AGG | - | chr2.2:46256480-46256499 | None:intergenic | 45.0% | |
CCAAGATCGATACATGGTTG+TGG | + | chr2.2:46256812-46256831 | MS.gene025209:CDS | 45.0% | |
CTCAACTCCCTACAGAACTA+TGG | + | chr2.2:46255999-46256018 | MS.gene025209:CDS | 45.0% | |
GAGTTGGAACTTGCATCAGT+TGG | - | chr2.2:46256198-46256217 | None:intergenic | 45.0% | |
GGAGAATTTGGAAGAGAAGG+AGG | - | chr2.2:46256096-46256115 | None:intergenic | 45.0% | |
GGATGAAGAATGGGGGAAAT+GGG | + | chr2.2:46256857-46256876 | MS.gene025209:CDS | 45.0% | |
TGGATGAAGAATGGGGGAAA+TGG | + | chr2.2:46256856-46256875 | MS.gene025209:CDS | 45.0% | |
TTTGTGGAGATGTTGATGCC+AGG | - | chr2.2:46256138-46256157 | None:intergenic | 45.0% | |
! | CCACAACCATGTATCGATCT+TGG | - | chr2.2:46256815-46256834 | None:intergenic | 45.0% |
! | CTTGCATCGACAACACTTTG+TGG | + | chr2.2:46257054-46257073 | MS.gene025209:CDS | 45.0% |
! | TCACCTCCTTTGTGTGGTTT+TGG | + | chr2.2:46256690-46256709 | MS.gene025209:CDS | 45.0% |
!! | AGAAGGTGCTAAACTGGAGT+TGG | - | chr2.2:46256214-46256233 | None:intergenic | 45.0% |
!! | CACAAAGTGTTGTCGATGCA+AGG | - | chr2.2:46257056-46257075 | None:intergenic | 45.0% |
!! | GAAGTGTTGTTCCTGCTAAG+AGG | - | chr2.2:46256339-46256358 | None:intergenic | 45.0% |
CTCTCCTTGGAGTAGTGTTG+AGG | + | chr2.2:46256473-46256492 | MS.gene025209:CDS | 50.0% | |
!! | CTTTGTGGTGTCATGCACCT+CGG | + | chr2.2:46257069-46257088 | MS.gene025209:CDS | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.2 | gene | 46255977 | 46257103 | 46255977 | ID=MS.gene025209 |
chr2.2 | mRNA | 46255977 | 46257103 | 46255977 | ID=MS.gene025209.t1;Parent=MS.gene025209 |
chr2.2 | exon | 46255977 | 46256065 | 46255977 | ID=MS.gene025209.t1.exon1;Parent=MS.gene025209.t1 |
chr2.2 | CDS | 46255977 | 46256065 | 46255977 | ID=cds.MS.gene025209.t1;Parent=MS.gene025209.t1 |
chr2.2 | exon | 46256389 | 46257103 | 46256389 | ID=MS.gene025209.t1.exon2;Parent=MS.gene025209.t1 |
chr2.2 | CDS | 46256389 | 46257103 | 46256389 | ID=cds.MS.gene025209.t1;Parent=MS.gene025209.t1 |
Gene Sequence |
Protein sequence |