Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017581.t1 | XP_003629211.1 | 94.5 | 397 | 22 | 0 | 1 | 397 | 1 | 397 | 2.40E-227 | 797.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017581.t1 | Q3EBZ2 | 29.9 | 405 | 237 | 13 | 23 | 395 | 1 | 390 | 6.7e-37 | 156.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017581.t1 | G7LA96 | 94.5 | 397 | 22 | 0 | 1 | 397 | 1 | 397 | 1.7e-227 | 797.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene08770 | MS.gene017581 | PPI |
| MS.gene017582 | MS.gene017581 | PPI |
| MS.gene28903 | MS.gene017581 | PPI |
| MS.gene018718 | MS.gene017581 | PPI |
| MS.gene037197 | MS.gene017581 | PPI |
| MS.gene30094 | MS.gene017581 | PPI |
| MS.gene017581 | MS.gene08770 | PPI |
| MS.gene28904 | MS.gene017581 | PPI |
| MS.gene91760 | MS.gene017581 | PPI |
| MS.gene064059 | MS.gene017581 | PPI |
| MS.gene023531 | MS.gene017581 | PPI |
| MS.gene025209 | MS.gene017581 | PPI |
| MS.gene23497 | MS.gene017581 | PPI |
| MS.gene39445 | MS.gene017581 | PPI |
| MS.gene23495 | MS.gene017581 | PPI |
| MS.gene017581 | MS.gene018718 | PPI |
| MS.gene44191 | MS.gene017581 | PPI |
| MS.gene012159 | MS.gene017581 | PPI |
| MS.gene44190 | MS.gene017581 | PPI |
| MS.gene049886 | MS.gene017581 | PPI |
| MS.gene97013 | MS.gene017581 | PPI |
| MS.gene64423 | MS.gene017581 | PPI |
| MS.gene012160 | MS.gene017581 | PPI |
| MS.gene66307 | MS.gene017581 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017581.t1 | MTR_8g074610 | 94.458 | 397 | 22 | 0 | 1 | 397 | 1 | 397 | 0.0 | 759 |
| MS.gene017581.t1 | MTR_2g041510 | 76.000 | 400 | 85 | 5 | 1 | 397 | 1 | 392 | 0.0 | 589 |
| MS.gene017581.t1 | MTR_2g041510 | 75.526 | 380 | 83 | 4 | 20 | 397 | 1 | 372 | 0.0 | 578 |
| MS.gene017581.t1 | MTR_8g074640 | 73.351 | 379 | 98 | 3 | 20 | 397 | 1 | 377 | 0.0 | 573 |
| MS.gene017581.t1 | MTR_8g085760 | 33.162 | 389 | 212 | 12 | 21 | 383 | 9 | 375 | 3.25e-51 | 176 |
| MS.gene017581.t1 | MTR_6g092570 | 33.333 | 375 | 203 | 10 | 21 | 383 | 4 | 343 | 1.40e-48 | 169 |
| MS.gene017581.t1 | MTR_5g079830 | 33.427 | 356 | 184 | 9 | 20 | 359 | 1 | 319 | 9.54e-48 | 167 |
| MS.gene017581.t1 | MTR_7g096720 | 35.753 | 372 | 178 | 17 | 20 | 359 | 6 | 348 | 1.99e-47 | 166 |
| MS.gene017581.t1 | MTR_4g088925 | 33.780 | 373 | 191 | 12 | 33 | 383 | 34 | 372 | 2.45e-46 | 163 |
| MS.gene017581.t1 | MTR_3g030050 | 31.163 | 430 | 227 | 15 | 16 | 395 | 10 | 420 | 1.35e-44 | 159 |
| MS.gene017581.t1 | MTR_2g047180 | 29.427 | 384 | 238 | 12 | 24 | 395 | 3 | 365 | 1.21e-31 | 124 |
| MS.gene017581.t1 | MTR_1g016570 | 27.543 | 403 | 213 | 13 | 16 | 395 | 13 | 359 | 1.35e-30 | 120 |
| MS.gene017581.t1 | MTR_3g029650 | 28.571 | 357 | 188 | 11 | 24 | 359 | 4 | 314 | 1.80e-29 | 120 |
| MS.gene017581.t1 | MTR_3g029650 | 25.575 | 391 | 241 | 12 | 16 | 376 | 364 | 734 | 3.33e-22 | 99.4 |
| MS.gene017581.t1 | MTR_6g018390 | 29.609 | 358 | 194 | 14 | 23 | 359 | 3 | 323 | 3.50e-29 | 117 |
| MS.gene017581.t1 | MTR_1g026850 | 29.032 | 403 | 219 | 16 | 20 | 395 | 1 | 363 | 4.63e-28 | 114 |
| MS.gene017581.t1 | MTR_6g027100 | 27.941 | 408 | 224 | 16 | 24 | 396 | 4 | 376 | 1.15e-27 | 114 |
| MS.gene017581.t1 | MTR_1g007260 | 28.647 | 377 | 214 | 13 | 24 | 375 | 21 | 367 | 1.33e-27 | 112 |
| MS.gene017581.t1 | MTR_6g027040 | 27.612 | 402 | 235 | 16 | 24 | 397 | 4 | 377 | 2.09e-26 | 109 |
| MS.gene017581.t1 | MTR_3g058460 | 28.974 | 390 | 229 | 15 | 25 | 395 | 15 | 375 | 6.44e-26 | 108 |
| MS.gene017581.t1 | MTR_3g030360 | 27.273 | 396 | 219 | 15 | 22 | 395 | 2 | 350 | 1.01e-25 | 107 |
| MS.gene017581.t1 | MTR_4g125090 | 26.347 | 334 | 171 | 9 | 21 | 340 | 41 | 313 | 9.27e-25 | 103 |
| MS.gene017581.t1 | MTR_3g030380 | 27.005 | 374 | 218 | 12 | 24 | 379 | 4 | 340 | 2.91e-24 | 103 |
| MS.gene017581.t1 | MTR_6g018360 | 27.078 | 373 | 216 | 13 | 24 | 374 | 4 | 342 | 6.13e-24 | 102 |
| MS.gene017581.t1 | MTR_3g114990 | 28.571 | 357 | 218 | 12 | 24 | 363 | 22 | 358 | 8.17e-24 | 102 |
| MS.gene017581.t1 | MTR_3g029620 | 27.225 | 382 | 221 | 14 | 23 | 381 | 1 | 348 | 1.07e-23 | 101 |
| MS.gene017581.t1 | MTR_3g030080 | 27.119 | 354 | 207 | 12 | 25 | 361 | 7 | 326 | 1.70e-23 | 101 |
| MS.gene017581.t1 | MTR_1g049170 | 25.481 | 416 | 237 | 17 | 20 | 395 | 1 | 383 | 4.45e-23 | 100 |
| MS.gene017581.t1 | MTR_3g029640 | 27.415 | 383 | 207 | 16 | 24 | 381 | 3 | 339 | 1.13e-22 | 98.6 |
| MS.gene017581.t1 | MTR_3g030480 | 26.260 | 377 | 215 | 14 | 24 | 379 | 4 | 338 | 1.31e-22 | 98.2 |
| MS.gene017581.t1 | MTR_3g030355 | 26.877 | 413 | 220 | 17 | 20 | 382 | 1 | 381 | 8.13e-22 | 96.7 |
| MS.gene017581.t1 | MTR_3g030440 | 25.459 | 381 | 221 | 14 | 20 | 379 | 1 | 339 | 3.65e-21 | 94.4 |
| MS.gene017581.t1 | MTR_3g114970 | 25.000 | 380 | 221 | 14 | 24 | 382 | 3 | 339 | 4.62e-21 | 94.0 |
| MS.gene017581.t1 | MTR_3g037710 | 31.034 | 261 | 130 | 8 | 140 | 376 | 9 | 243 | 5.75e-21 | 92.0 |
| MS.gene017581.t1 | MTR_6g018400 | 26.536 | 358 | 202 | 10 | 22 | 357 | 2 | 320 | 1.21e-20 | 92.8 |
| MS.gene017581.t1 | MTR_3g091990 | 27.624 | 362 | 209 | 14 | 24 | 359 | 6 | 340 | 1.52e-20 | 93.2 |
| MS.gene017581.t1 | MTR_3g029670 | 26.952 | 397 | 225 | 14 | 24 | 382 | 4 | 373 | 1.54e-20 | 92.8 |
| MS.gene017581.t1 | MTR_3g030560 | 26.471 | 408 | 226 | 19 | 24 | 395 | 3 | 372 | 5.05e-20 | 91.3 |
| MS.gene017581.t1 | MTR_3g029840 | 26.211 | 351 | 209 | 13 | 25 | 361 | 5 | 319 | 1.04e-19 | 90.1 |
| MS.gene017581.t1 | MTR_3g029920 | 27.889 | 398 | 219 | 15 | 24 | 394 | 8 | 364 | 1.13e-19 | 90.1 |
| MS.gene017581.t1 | MTR_6g018315 | 26.873 | 387 | 220 | 16 | 44 | 396 | 9 | 366 | 2.46e-19 | 89.4 |
| MS.gene017581.t1 | MTR_3g029950 | 27.297 | 370 | 190 | 16 | 25 | 365 | 5 | 324 | 2.51e-18 | 86.3 |
| MS.gene017581.t1 | MTR_3g092000 | 25.679 | 405 | 216 | 18 | 24 | 381 | 6 | 372 | 3.85e-18 | 85.9 |
| MS.gene017581.t1 | MTR_3g029750 | 24.737 | 380 | 222 | 12 | 24 | 370 | 4 | 352 | 2.80e-17 | 83.2 |
| MS.gene017581.t1 | MTR_3g047980 | 28.191 | 376 | 219 | 14 | 25 | 395 | 30 | 359 | 6.01e-17 | 82.0 |
| MS.gene017581.t1 | MTR_3g029900 | 30.058 | 173 | 85 | 5 | 218 | 387 | 297 | 436 | 1.96e-13 | 72.0 |
| MS.gene017581.t1 | MTR_5g042230 | 32.895 | 152 | 88 | 5 | 210 | 359 | 13 | 152 | 9.61e-12 | 64.3 |
| MS.gene017581.t1 | MTR_1g007250 | 33.333 | 144 | 79 | 4 | 227 | 367 | 4 | 133 | 1.20e-11 | 63.2 |
| MS.gene017581.t1 | MTR_1g016540 | 29.101 | 189 | 104 | 6 | 225 | 395 | 2 | 178 | 1.45e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017581.t1 | AT2G17030 | 29.877 | 405 | 237 | 13 | 23 | 395 | 1 | 390 | 5.35e-41 | 150 |
| MS.gene017581.t1 | AT2G17036 | 28.186 | 408 | 234 | 16 | 23 | 395 | 1 | 384 | 1.95e-35 | 134 |
| MS.gene017581.t1 | AT2G17036 | 28.256 | 407 | 233 | 16 | 24 | 395 | 1 | 383 | 3.32e-35 | 134 |
| MS.gene017581.t1 | AT1G65770 | 28.883 | 367 | 211 | 13 | 23 | 372 | 1 | 334 | 3.62e-34 | 130 |
| MS.gene017581.t1 | AT4G35733 | 28.866 | 388 | 215 | 15 | 20 | 384 | 1 | 350 | 2.20e-32 | 125 |
| MS.gene017581.t1 | AT2G26160 | 30.028 | 353 | 194 | 14 | 25 | 361 | 5 | 320 | 2.90e-28 | 113 |
| MS.gene017581.t1 | AT1G44080 | 28.261 | 368 | 211 | 13 | 24 | 381 | 4 | 328 | 9.11e-28 | 112 |
| MS.gene017581.t1 | AT3G25750 | 27.151 | 372 | 222 | 11 | 22 | 376 | 2 | 341 | 4.49e-26 | 108 |
| MS.gene017581.t1 | AT3G25750 | 27.838 | 370 | 208 | 13 | 22 | 376 | 2 | 327 | 1.11e-24 | 103 |
| MS.gene017581.t1 | AT2G17690 | 28.673 | 422 | 216 | 15 | 25 | 379 | 3 | 406 | 2.57e-24 | 104 |
| MS.gene017581.t1 | AT5G60060 | 29.395 | 347 | 197 | 16 | 26 | 351 | 11 | 330 | 2.35e-23 | 100 |
| MS.gene017581.t1 | AT1G65740 | 27.660 | 376 | 216 | 14 | 23 | 372 | 1 | 346 | 1.10e-22 | 99.0 |
| MS.gene017581.t1 | AT1G65760 | 27.869 | 366 | 212 | 14 | 25 | 372 | 5 | 336 | 2.35e-22 | 97.8 |
| MS.gene017581.t1 | AT2G16290 | 26.485 | 404 | 234 | 17 | 23 | 383 | 1 | 384 | 3.63e-19 | 89.0 |
| MS.gene017581.t1 | AT5G24040 | 24.064 | 374 | 205 | 14 | 23 | 363 | 1 | 328 | 8.02e-14 | 72.8 |
| MS.gene017581.t1 | AT1G64840 | 24.650 | 357 | 216 | 14 | 25 | 361 | 4 | 327 | 2.25e-11 | 65.5 |
| MS.gene017581.t1 | AT2G16300 | 24.085 | 328 | 203 | 13 | 23 | 322 | 1 | 310 | 7.49e-11 | 63.2 |
Find 72 sgRNAs with CRISPR-Local
Find 79 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATGTTCGTATGTATAATT+TGG | 0.212475 | 8.3:+28590468 | MS.gene017581:CDS |
| TCACCTCCTTTGTGTGGATT+TGG | 0.230521 | 8.3:+28590160 | MS.gene017581:CDS |
| AAGGGAACTGCATCTACTTT+AGG | 0.247416 | 8.3:+28590437 | MS.gene017581:CDS |
| ATCTTTCAAGAGGGTAAATT+AGG | 0.254641 | 8.3:+28589983 | MS.gene017581:CDS |
| GTCTCAACTAAAGACTTAAT+TGG | 0.265830 | 8.3:+28590409 | MS.gene017581:CDS |
| TGGATGAAGAATGGGGAAAA+TGG | 0.270862 | 8.3:+28590326 | MS.gene017581:CDS |
| TTCCAAAGGTTGGCTGATTA+AGG | 0.291497 | 8.3:+28589718 | MS.gene017581:CDS |
| AATGGAAAAGAAGGAGAGTT+TGG | 0.332443 | 8.3:-28589575 | None:intergenic |
| AGGTGCTAAAGGTTCTAAAT+TGG | 0.350268 | 8.3:-28589690 | None:intergenic |
| ATAGGACTCAACAAACTTAC+AGG | 0.370665 | 8.3:-28589761 | None:intergenic |
| ATAAATGGGGAACTATTTCA+TGG | 0.373052 | 8.3:+28590104 | MS.gene017581:CDS |
| AGGGAACTGCATCTACTTTA+GGG | 0.379511 | 8.3:+28590438 | MS.gene017581:CDS |
| GAAGGAGAGTTTGGATGAGA+TGG | 0.382409 | 8.3:-28589566 | None:intergenic |
| CTCAACTTCCTATAGAACTA+TGG | 0.385206 | 8.3:+28589459 | MS.gene017581:CDS |
| CAATGATATAAACGGTTGAT+TGG | 0.387856 | 8.3:-28589643 | None:intergenic |
| ACACTAGTCCAAGGAGAGTT+AGG | 0.390020 | 8.3:-28589938 | None:intergenic |
| TTATAAGTTGGATGAAGAAT+GGG | 0.394790 | 8.3:+28590318 | MS.gene017581:CDS |
| TACCTTAATCAGCCAACCTT+TGG | 0.397147 | 8.3:-28589720 | None:intergenic |
| TTTATAAGTTGGATGAAGAA+TGG | 0.397683 | 8.3:+28590317 | MS.gene017581:CDS |
| CACCTTCTTCTTCCAAAGGT+TGG | 0.399560 | 8.3:+28589708 | MS.gene017581:CDS |
| TATGGAACTTGTTGGATCAT+AGG | 0.405981 | 8.3:+28589837 | MS.gene017581:CDS |
| AAAGACTTAATTGGATATCA+AGG | 0.406036 | 8.3:+28590418 | MS.gene017581:CDS |
| GGATGATCATAGAATCACTA+TGG | 0.406868 | 8.3:+28590489 | MS.gene017581:CDS |
| TGGAAACAAGAAGCATTTGA+TGG | 0.415140 | 8.3:+28590180 | MS.gene017581:CDS |
| TGTTCTATCCTAACTCTCCT+TGG | 0.421475 | 8.3:+28589930 | MS.gene017581:CDS |
| ATCTTAGGCCATAGTTCTAT+AGG | 0.430698 | 8.3:-28589467 | None:intergenic |
| TTGTTTAGCGAGTCGTAGAC+GGG | 0.437995 | 8.3:-28589611 | None:intergenic |
| AGTTGGTTCAATGATATAAA+CGG | 0.439030 | 8.3:-28589651 | None:intergenic |
| TACCATGCTATGGAACTTGT+TGG | 0.443560 | 8.3:+28589829 | MS.gene017581:CDS |
| ATCTGATTCTTCTTCATCCA+TGG | 0.450631 | 8.3:+28589418 | MS.gene017581:CDS |
| TGACGATGTTATTGTGTTCA+AGG | 0.452162 | 8.3:+28590063 | MS.gene017581:CDS |
| ATAGAACTATGGCCTAAGAT+AGG | 0.452927 | 8.3:+28589470 | MS.gene017581:CDS |
| CTTGTATTGACAAGACTTTG+TGG | 0.456773 | 8.3:+28590524 | MS.gene017581:CDS |
| ATGTTTCAAAGTTTATAAGT+TGG | 0.473392 | 8.3:+28590306 | MS.gene017581:CDS |
| GGATGAAGAATGGGGAAAAT+GGG | 0.473828 | 8.3:+28590327 | MS.gene017581:CDS |
| GTTGTTTAGCGAGTCGTAGA+CGG | 0.476920 | 8.3:-28589612 | None:intergenic |
| ACGGGGTGAGGTATTTGTAA+TGG | 0.478844 | 8.3:-28589593 | None:intergenic |
| GGAGAGTTTGGATGAGATGG+AGG | 0.480906 | 8.3:-28589563 | None:intergenic |
| CTTTGTGGTCTCGTTCACCT+TGG | 0.488154 | 8.3:+28590539 | MS.gene017581:CDS |
| CTGTGAAAGTAGTGAAGACA+TGG | 0.493157 | 8.3:+28590237 | MS.gene017581:CDS |
| AGCGAGTCGTAGACGGGGTG+AGG | 0.500814 | 8.3:-28589605 | None:intergenic |
| TTGGAAGAAGAAGGTGCTAA+AGG | 0.501406 | 8.3:-28589701 | None:intergenic |
| CACAAAGTCTTGTCAATACA+AGG | 0.513043 | 8.3:-28590523 | None:intergenic |
| GGTATTTGTAATGGAAAAGA+AGG | 0.516150 | 8.3:-28589584 | None:intergenic |
| TAAAGGTTCTAAATTGGAGT+TGG | 0.521984 | 8.3:-28589684 | None:intergenic |
| GAAGTGTTGTTACTGCTAAG+AGG | 0.538395 | 8.3:-28589806 | None:intergenic |
| CAATTCTCACCTCCTTTGTG+TGG | 0.538436 | 8.3:+28590154 | MS.gene017581:CDS |
| GTTTGGATGAGATGGAGGAA+TGG | 0.540037 | 8.3:-28589558 | None:intergenic |
| CCAATCAACTATCTCATCCA+TGG | 0.548037 | 8.3:-28589435 | None:intergenic |
| CCATGGATGAGATAGTTGAT+TGG | 0.548664 | 8.3:+28589435 | MS.gene017581:CDS |
| ACAACACTTCTACCATGCTA+TGG | 0.549319 | 8.3:+28589819 | MS.gene017581:CDS |
| TTAGCACCTTCTTCTTCCAA+AGG | 0.559083 | 8.3:+28589704 | MS.gene017581:CDS |
| AGCCAACCTTTGGAAGAAGA+AGG | 0.565959 | 8.3:-28589710 | None:intergenic |
| ATCCAACAAGTTCCATAGCA+TGG | 0.567906 | 8.3:-28589831 | None:intergenic |
| GACGATGTTATTGTGTTCAA+GGG | 0.569592 | 8.3:+28590064 | MS.gene017581:CDS |
| AAGTGTTGTTACTGCTAAGA+GGG | 0.570047 | 8.3:-28589805 | None:intergenic |
| TATAAGTTGGATGAAGAATG+GGG | 0.581944 | 8.3:+28590319 | MS.gene017581:CDS |
| GCCATCTAACATCTCATCCA+AGG | 0.582881 | 8.3:-28590556 | None:intergenic |
| CTCTCCTTGGACTAGTGTTG+AGG | 0.583954 | 8.3:+28589943 | MS.gene017581:CDS |
| GAGTTGGAACTTGCATCAGT+TGG | 0.584443 | 8.3:-28589668 | None:intergenic |
| AGCTTGTTGTATCTTTCAAG+AGG | 0.595503 | 8.3:+28589973 | MS.gene017581:CDS |
| AAGACTTAATTGGATATCAA+GGG | 0.598333 | 8.3:+28590419 | MS.gene017581:CDS |
| GCTTGTTGTATCTTTCAAGA+GGG | 0.601791 | 8.3:+28589974 | MS.gene017581:CDS |
| AAATTAGGATTCATGAAACA+TGG | 0.629944 | 8.3:+28589998 | MS.gene017581:CDS |
| TTTCCAAATCCACACAAAGG+AGG | 0.638096 | 8.3:-28590163 | None:intergenic |
| AAAGTAGTGAAGACATGGGA+AGG | 0.643211 | 8.3:+28590242 | MS.gene017581:CDS |
| CTACGATCGAGACACTGATG+TGG | 0.646731 | 8.3:+28590282 | MS.gene017581:CDS |
| CATTCCTCAACACTAGTCCA+AGG | 0.647862 | 8.3:-28589947 | None:intergenic |
| TTGTTTCCAAATCCACACAA+AGG | 0.650065 | 8.3:-28590166 | None:intergenic |
| AAGCATTTGATGGAGTCATG+TGG | 0.661502 | 8.3:+28590190 | MS.gene017581:CDS |
| TGTTTAGCGAGTCGTAGACG+GGG | 0.706428 | 8.3:-28589610 | None:intergenic |
| TGTGAAAGTAGTGAAGACAT+GGG | 0.714849 | 8.3:+28590238 | MS.gene017581:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGTTTCAAAGTTTATAAGT+TGG | + | chr8.3:28590306-28590325 | MS.gene017581:CDS | 20.0% |
| !!! | AGTTTTATGTTACTGATAAA+TGG | + | chr8.3:28590089-28590108 | MS.gene017581:CDS | 20.0% |
| !!! | GTTTTATGTTACTGATAAAT+GGG | + | chr8.3:28590090-28590109 | MS.gene017581:CDS | 20.0% |
| !!! | TTTTATGTTACTGATAAATG+GGG | + | chr8.3:28590091-28590110 | MS.gene017581:CDS | 20.0% |
| ! | AAAGACTTAATTGGATATCA+AGG | + | chr8.3:28590418-28590437 | MS.gene017581:CDS | 25.0% |
| ! | AAATTAGGATTCATGAAACA+TGG | + | chr8.3:28589998-28590017 | MS.gene017581:CDS | 25.0% |
| ! | AAGACTTAATTGGATATCAA+GGG | + | chr8.3:28590419-28590438 | MS.gene017581:CDS | 25.0% |
| ! | TGATGTTCGTATGTATAATT+TGG | + | chr8.3:28590468-28590487 | MS.gene017581:CDS | 25.0% |
| !! | AGTTGGTTCAATGATATAAA+CGG | - | chr8.3:28589654-28589673 | None:intergenic | 25.0% |
| !! | TCAAGATATTTTCCTATCTT+AGG | - | chr8.3:28589485-28589504 | None:intergenic | 25.0% |
| !! | TTATAAGTTGGATGAAGAAT+GGG | + | chr8.3:28590318-28590337 | MS.gene017581:CDS | 25.0% |
| !! | TTTATAAGTTGGATGAAGAA+TGG | + | chr8.3:28590317-28590336 | MS.gene017581:CDS | 25.0% |
| !!! | TAAGAGGGTATGATAATTTT+CGG | - | chr8.3:28589793-28589812 | None:intergenic | 25.0% |
| ATAAATGGGGAACTATTTCA+TGG | + | chr8.3:28590104-28590123 | MS.gene017581:CDS | 30.0% | |
| ATCTTTCAAGAGGGTAAATT+AGG | + | chr8.3:28589983-28590002 | MS.gene017581:CDS | 30.0% | |
| CAATGATATAAACGGTTGAT+TGG | - | chr8.3:28589646-28589665 | None:intergenic | 30.0% | |
| GTCTCAACTAAAGACTTAAT+TGG | + | chr8.3:28590409-28590428 | MS.gene017581:CDS | 30.0% | |
| ! | GGTATTTGTAATGGAAAAGA+AGG | - | chr8.3:28589587-28589606 | None:intergenic | 30.0% |
| ! | TATAAGTTGGATGAAGAATG+GGG | + | chr8.3:28590319-28590338 | MS.gene017581:CDS | 30.0% |
| ! | TGAAACATGGTGATGAAAAA+TGG | + | chr8.3:28590011-28590030 | MS.gene017581:CDS | 30.0% |
| !! | TAAAGGTTCTAAATTGGAGT+TGG | - | chr8.3:28589687-28589706 | None:intergenic | 30.0% |
| AATGGAAAAGAAGGAGAGTT+TGG | - | chr8.3:28589578-28589597 | None:intergenic | 35.0% | |
| ATAGAACTATGGCCTAAGAT+AGG | + | chr8.3:28589470-28589489 | MS.gene017581:CDS | 35.0% | |
| ATAGGACTCAACAAACTTAC+AGG | - | chr8.3:28589764-28589783 | None:intergenic | 35.0% | |
| ATCTGATTCTTCTTCATCCA+TGG | + | chr8.3:28589418-28589437 | MS.gene017581:CDS | 35.0% | |
| CTCAACTTCCTATAGAACTA+TGG | + | chr8.3:28589459-28589478 | MS.gene017581:CDS | 35.0% | |
| GACGATGTTATTGTGTTCAA+GGG | + | chr8.3:28590064-28590083 | MS.gene017581:CDS | 35.0% | |
| GGATGATCATAGAATCACTA+TGG | + | chr8.3:28590489-28590508 | MS.gene017581:CDS | 35.0% | |
| TGACGATGTTATTGTGTTCA+AGG | + | chr8.3:28590063-28590082 | MS.gene017581:CDS | 35.0% | |
| TGATGAAAAATGGACACTTG+TGG | + | chr8.3:28590021-28590040 | MS.gene017581:CDS | 35.0% | |
| TGTGAAAGTAGTGAAGACAT+GGG | + | chr8.3:28590238-28590257 | MS.gene017581:CDS | 35.0% | |
| TTGTTTCCAAATCCACACAA+AGG | - | chr8.3:28590169-28590188 | None:intergenic | 35.0% | |
| ! | AAGTGTTGTTACTGCTAAGA+GGG | - | chr8.3:28589808-28589827 | None:intergenic | 35.0% |
| ! | ATCTTAGGCCATAGTTCTAT+AGG | - | chr8.3:28589470-28589489 | None:intergenic | 35.0% |
| ! | CACAAAGTCTTGTCAATACA+AGG | - | chr8.3:28590526-28590545 | None:intergenic | 35.0% |
| ! | CTTGTATTGACAAGACTTTG+TGG | + | chr8.3:28590524-28590543 | MS.gene017581:CDS | 35.0% |
| ! | GATAATTTTCGGTCAGAGAT+AGG | - | chr8.3:28589782-28589801 | None:intergenic | 35.0% |
| !! | AGCTTGTTGTATCTTTCAAG+AGG | + | chr8.3:28589973-28589992 | MS.gene017581:CDS | 35.0% |
| !! | AGGTGCTAAAGGTTCTAAAT+TGG | - | chr8.3:28589693-28589712 | None:intergenic | 35.0% |
| !! | GCTTGTTGTATCTTTCAAGA+GGG | + | chr8.3:28589974-28589993 | MS.gene017581:CDS | 35.0% |
| !! | TATGGAACTTGTTGGATCAT+AGG | + | chr8.3:28589837-28589856 | MS.gene017581:CDS | 35.0% |
| !! | TGGAAACAAGAAGCATTTGA+TGG | + | chr8.3:28590180-28590199 | MS.gene017581:CDS | 35.0% |
| AAAGTAGTGAAGACATGGGA+AGG | + | chr8.3:28590242-28590261 | MS.gene017581:CDS | 40.0% | |
| AAGCATTTGATGGAGTCATG+TGG | + | chr8.3:28590190-28590209 | MS.gene017581:CDS | 40.0% | |
| AAGGGAACTGCATCTACTTT+AGG | + | chr8.3:28590437-28590456 | MS.gene017581:CDS | 40.0% | |
| ACAACACTTCTACCATGCTA+TGG | + | chr8.3:28589819-28589838 | MS.gene017581:CDS | 40.0% | |
| AGGGAACTGCATCTACTTTA+GGG | + | chr8.3:28590438-28590457 | MS.gene017581:CDS | 40.0% | |
| ATCCAACAAGTTCCATAGCA+TGG | - | chr8.3:28589834-28589853 | None:intergenic | 40.0% | |
| CCAATCAACTATCTCATCCA+TGG | - | chr8.3:28589438-28589457 | None:intergenic | 40.0% | |
| CCATGGATGAGATAGTTGAT+TGG | + | chr8.3:28589435-28589454 | MS.gene017581:CDS | 40.0% | |
| CTGTGAAAGTAGTGAAGACA+TGG | + | chr8.3:28590237-28590256 | MS.gene017581:CDS | 40.0% | |
| GGATGAAGAATGGGGAAAAT+GGG | + | chr8.3:28590327-28590346 | MS.gene017581:CDS | 40.0% | |
| TACCATGCTATGGAACTTGT+TGG | + | chr8.3:28589829-28589848 | MS.gene017581:CDS | 40.0% | |
| TACCTTAATCAGCCAACCTT+TGG | - | chr8.3:28589723-28589742 | None:intergenic | 40.0% | |
| TGGATGAAGAATGGGGAAAA+TGG | + | chr8.3:28590326-28590345 | MS.gene017581:CDS | 40.0% | |
| TGTTCTATCCTAACTCTCCT+TGG | + | chr8.3:28589930-28589949 | MS.gene017581:CDS | 40.0% | |
| TTAGCACCTTCTTCTTCCAA+AGG | + | chr8.3:28589704-28589723 | MS.gene017581:CDS | 40.0% | |
| TTTCCAAATCCACACAAAGG+AGG | - | chr8.3:28590166-28590185 | None:intergenic | 40.0% | |
| ! | TTCCAAAGGTTGGCTGATTA+AGG | + | chr8.3:28589718-28589737 | MS.gene017581:CDS | 40.0% |
| !! | GAAGTGTTGTTACTGCTAAG+AGG | - | chr8.3:28589809-28589828 | None:intergenic | 40.0% |
| !! | TTGGAAGAAGAAGGTGCTAA+AGG | - | chr8.3:28589704-28589723 | None:intergenic | 40.0% |
| ACACTAGTCCAAGGAGAGTT+AGG | - | chr8.3:28589941-28589960 | None:intergenic | 45.0% | |
| CAATTCTCACCTCCTTTGTG+TGG | + | chr8.3:28590154-28590173 | MS.gene017581:CDS | 45.0% | |
| CACCTTCTTCTTCCAAAGGT+TGG | + | chr8.3:28589708-28589727 | MS.gene017581:CDS | 45.0% | |
| CATTCCTCAACACTAGTCCA+AGG | - | chr8.3:28589950-28589969 | None:intergenic | 45.0% | |
| GAAGGAGAGTTTGGATGAGA+TGG | - | chr8.3:28589569-28589588 | None:intergenic | 45.0% | |
| GAGTTGGAACTTGCATCAGT+TGG | - | chr8.3:28589671-28589690 | None:intergenic | 45.0% | |
| GTTGTTTAGCGAGTCGTAGA+CGG | - | chr8.3:28589615-28589634 | None:intergenic | 45.0% | |
| GTTTGGATGAGATGGAGGAA+TGG | - | chr8.3:28589561-28589580 | None:intergenic | 45.0% | |
| TCACCTCCTTTGTGTGGATT+TGG | + | chr8.3:28590160-28590179 | MS.gene017581:CDS | 45.0% | |
| TTGTTTAGCGAGTCGTAGAC+GGG | - | chr8.3:28589614-28589633 | None:intergenic | 45.0% | |
| ! | ACGGGGTGAGGTATTTGTAA+TGG | - | chr8.3:28589596-28589615 | None:intergenic | 45.0% |
| ! | AGCCAACCTTTGGAAGAAGA+AGG | - | chr8.3:28589713-28589732 | None:intergenic | 45.0% |
| CTACGATCGAGACACTGATG+TGG | + | chr8.3:28590282-28590301 | MS.gene017581:CDS | 50.0% | |
| CTTTGTGGTCTCGTTCACCT+TGG | + | chr8.3:28590539-28590558 | MS.gene017581:CDS | 50.0% | |
| GGAGAGTTTGGATGAGATGG+AGG | - | chr8.3:28589566-28589585 | None:intergenic | 50.0% | |
| TGTTTAGCGAGTCGTAGACG+GGG | - | chr8.3:28589613-28589632 | None:intergenic | 50.0% | |
| !! | CTCTCCTTGGACTAGTGTTG+AGG | + | chr8.3:28589943-28589962 | MS.gene017581:CDS | 50.0% |
| AGCGAGTCGTAGACGGGGTG+AGG | - | chr8.3:28589608-28589627 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 28589380 | 28590573 | 28589380 | ID=MS.gene017581 |
| chr8.3 | mRNA | 28589380 | 28590573 | 28589380 | ID=MS.gene017581.t1;Parent=MS.gene017581 |
| chr8.3 | exon | 28589380 | 28590573 | 28589380 | ID=MS.gene017581.t1.exon1;Parent=MS.gene017581.t1 |
| chr8.3 | CDS | 28589380 | 28590573 | 28589380 | ID=cds.MS.gene017581.t1;Parent=MS.gene017581.t1 |
| Gene Sequence |
| Protein sequence |
