Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08770.t1 | XP_003629719.2 | 91.5 | 386 | 31 | 1 | 1 | 386 | 1 | 384 | 3.40E-210 | 740.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08770.t1 | Q1PEZ8 | 30.3 | 346 | 201 | 8 | 13 | 351 | 5 | 317 | 2.9e-32 | 141.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08770.t1 | G7LIM0 | 91.5 | 386 | 31 | 1 | 1 | 386 | 1 | 384 | 2.4e-210 | 740.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene08770 | MS.gene017581 | PPI |
MS.gene39445 | MS.gene08770 | PPI |
MS.gene049886 | MS.gene08770 | PPI |
MS.gene23495 | MS.gene08770 | PPI |
MS.gene66307 | MS.gene08770 | PPI |
MS.gene017581 | MS.gene08770 | PPI |
MS.gene44191 | MS.gene08770 | PPI |
MS.gene012159 | MS.gene08770 | PPI |
MS.gene44190 | MS.gene08770 | PPI |
MS.gene97013 | MS.gene08770 | PPI |
MS.gene64423 | MS.gene08770 | PPI |
MS.gene012160 | MS.gene08770 | PPI |
MS.gene037197 | MS.gene08770 | PPI |
MS.gene017582 | MS.gene08770 | PPI |
MS.gene28903 | MS.gene08770 | PPI |
MS.gene018718 | MS.gene08770 | PPI |
MS.gene23497 | MS.gene08770 | PPI |
MS.gene30094 | MS.gene08770 | PPI |
MS.gene28904 | MS.gene08770 | PPI |
MS.gene91760 | MS.gene08770 | PPI |
MS.gene064059 | MS.gene08770 | PPI |
MS.gene023531 | MS.gene08770 | PPI |
MS.gene08770 | MS.gene018718 | PPI |
MS.gene025209 | MS.gene08770 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08770.t1 | MTR_8g085760 | 93.264 | 386 | 24 | 1 | 1 | 386 | 1 | 384 | 0.0 | 744 |
MS.gene08770.t1 | MTR_7g096720 | 52.393 | 397 | 157 | 11 | 4 | 385 | 2 | 381 | 1.78e-126 | 369 |
MS.gene08770.t1 | MTR_4g088925 | 50.404 | 371 | 152 | 9 | 21 | 384 | 34 | 379 | 3.72e-107 | 320 |
MS.gene08770.t1 | MTR_6g092570 | 41.582 | 392 | 170 | 15 | 6 | 382 | 1 | 348 | 8.81e-78 | 244 |
MS.gene08770.t1 | MTR_5g079830 | 40.162 | 371 | 170 | 12 | 10 | 367 | 3 | 334 | 1.11e-67 | 219 |
MS.gene08770.t1 | MTR_2g041510 | 35.550 | 391 | 196 | 14 | 9 | 377 | 2 | 358 | 3.77e-52 | 178 |
MS.gene08770.t1 | MTR_2g041510 | 35.550 | 391 | 196 | 14 | 9 | 377 | 22 | 378 | 4.07e-52 | 178 |
MS.gene08770.t1 | MTR_8g074610 | 34.103 | 390 | 209 | 13 | 9 | 377 | 21 | 383 | 1.43e-51 | 177 |
MS.gene08770.t1 | MTR_8g074640 | 32.727 | 385 | 199 | 12 | 9 | 366 | 2 | 353 | 5.00e-48 | 167 |
MS.gene08770.t1 | MTR_4g125090 | 36.119 | 335 | 150 | 13 | 5 | 333 | 37 | 313 | 1.39e-45 | 159 |
MS.gene08770.t1 | MTR_7g096760 | 56.989 | 93 | 37 | 3 | 234 | 324 | 2 | 93 | 3.45e-24 | 97.1 |
MS.gene08770.t1 | MTR_3g030050 | 23.266 | 447 | 225 | 17 | 9 | 378 | 12 | 417 | 3.45e-16 | 80.1 |
MS.gene08770.t1 | MTR_1g026850 | 24.619 | 394 | 232 | 14 | 12 | 378 | 5 | 360 | 6.37e-14 | 72.8 |
MS.gene08770.t1 | MTR_3g029620 | 23.866 | 419 | 218 | 19 | 11 | 378 | 1 | 369 | 6.83e-12 | 66.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08770.t1 | AT2G26160 | 30.347 | 346 | 201 | 8 | 13 | 351 | 5 | 317 | 2.74e-39 | 143 |
MS.gene08770.t1 | AT4G35733 | 27.177 | 379 | 237 | 8 | 14 | 383 | 7 | 355 | 8.27e-33 | 126 |
MS.gene08770.t1 | AT1G44080 | 27.095 | 358 | 215 | 8 | 12 | 365 | 4 | 319 | 2.51e-29 | 116 |
MS.gene08770.t1 | AT1G65770 | 27.390 | 387 | 198 | 13 | 11 | 366 | 1 | 335 | 1.71e-28 | 114 |
MS.gene08770.t1 | AT1G65740 | 26.542 | 373 | 231 | 12 | 11 | 366 | 1 | 347 | 4.72e-24 | 102 |
MS.gene08770.t1 | AT3G25750 | 26.934 | 349 | 214 | 13 | 12 | 352 | 4 | 319 | 7.31e-23 | 99.0 |
MS.gene08770.t1 | AT3G25750 | 27.326 | 344 | 205 | 14 | 12 | 352 | 4 | 305 | 9.88e-23 | 98.6 |
MS.gene08770.t1 | AT2G17030 | 26.374 | 364 | 199 | 13 | 11 | 340 | 1 | 329 | 2.69e-21 | 95.1 |
MS.gene08770.t1 | AT1G57906 | 28.755 | 233 | 129 | 8 | 138 | 343 | 6 | 228 | 5.77e-13 | 68.2 |
MS.gene08770.t1 | AT2G17036 | 23.011 | 352 | 213 | 11 | 11 | 336 | 1 | 320 | 6.64e-11 | 63.9 |
Find 70 sgRNAs with CRISPR-Local
Find 86 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAAGTGCATGTTTGCAATAT+TGG | 0.191961 | 4.2:+12714686 | MS.gene08770:CDS |
ACTTCAACTTCTTCTAATAA+AGG | 0.233510 | 4.2:+12714365 | MS.gene08770:CDS |
CAAGGCCTATTGTTTCAATT+TGG | 0.239371 | 4.2:+12715177 | MS.gene08770:CDS |
CTTGCAAATTATTTGATCAT+AGG | 0.244392 | 4.2:-12715256 | None:intergenic |
GGGTGAAGCTTTGTTTGTTT+TGG | 0.247417 | 4.2:+12715075 | MS.gene08770:CDS |
ATCATCATCATCCATTATTA+TGG | 0.249406 | 4.2:-12714723 | None:intergenic |
TATAACTAACCATAACTCTT+TGG | 0.271598 | 4.2:-12714162 | None:intergenic |
TTGTTAGCTCAAGGCTATTA+TGG | 0.272989 | 4.2:+12715118 | MS.gene08770:CDS |
TTGATCAAGAATGGGGTAAA+TGG | 0.295549 | 4.2:+12715035 | MS.gene08770:CDS |
TGTAGAAAATATTTAAGATA+TGG | 0.319060 | 4.2:-12714287 | None:intergenic |
GTAAGCCTGCCAACAGCTTT+TGG | 0.333990 | 4.2:+12715212 | MS.gene08770:CDS |
ATTCTCCAAATTGAAACAAT+AGG | 0.348900 | 4.2:-12715182 | None:intergenic |
ATCATAGGGTTGAACAAAGT+TGG | 0.349987 | 4.2:-12715241 | None:intergenic |
CTTTATGTTGTGGATGAAAA+CGG | 0.357862 | 4.2:+12714788 | MS.gene08770:CDS |
CTCCGGGGATGGATATGTCT+TGG | 0.358073 | 4.2:-12714453 | None:intergenic |
TAAGAAAACAACCATAATAA+TGG | 0.362578 | 4.2:+12714712 | MS.gene08770:CDS |
CTTCAACTTCTTCTAATAAA+GGG | 0.370190 | 4.2:+12714366 | MS.gene08770:CDS |
TTTATAAGCTTGATCAAGAA+TGG | 0.373053 | 4.2:+12715026 | MS.gene08770:CDS |
TTTGATGAACTTTCGATTTG+TGG | 0.374755 | 4.2:+12714529 | MS.gene08770:CDS |
ATGGTTTGATGTGCCAGATC+TGG | 0.383540 | 4.2:+12715054 | MS.gene08770:CDS |
CAATCCTTTGACTTTGAAGT+TGG | 0.391090 | 4.2:+12714826 | MS.gene08770:CDS |
GTGGCTCATAAAACTTGTTC+AGG | 0.397814 | 4.2:+12714388 | MS.gene08770:CDS |
ATAACTAACCATAACTCTTT+GGG | 0.402986 | 4.2:-12714161 | None:intergenic |
TTTATGTTGTGGATGAAAAC+GGG | 0.411799 | 4.2:+12714789 | MS.gene08770:CDS |
TCCGGGGATGGATATGTCTT+GGG | 0.419316 | 4.2:-12714452 | None:intergenic |
CAAAGTTGTACTGTTGTGAT+AGG | 0.419830 | 4.2:+12714861 | MS.gene08770:CDS |
TTTCAGTATGCACCGCTTAG+TGG | 0.421484 | 4.2:+12714608 | MS.gene08770:CDS |
ATAGGAATAAGCAGCACATA+TGG | 0.421633 | 4.2:+12714879 | MS.gene08770:CDS |
TAAATCTTCCCAAAGAGTTA+TGG | 0.424821 | 4.2:+12714153 | MS.gene08770:CDS |
GGGACAAGAGAGCGACATAA+AGG | 0.429347 | 4.2:-12714236 | None:intergenic |
TTGCAAATTATTTGATCATA+GGG | 0.438640 | 4.2:-12715255 | None:intergenic |
TTATAAGCTTGATCAAGAAT+GGG | 0.444146 | 4.2:+12715027 | MS.gene08770:CDS |
GTTTCAATTTGGAGAATTCA+AGG | 0.444647 | 4.2:+12715188 | MS.gene08770:CDS |
CGATTTGTGGAGTTGTTTGA+AGG | 0.445651 | 4.2:+12714542 | MS.gene08770:CDS |
CATAATTTCTCTAGATATCA+AGG | 0.448445 | 4.2:+12714578 | MS.gene08770:CDS |
CTATCACAACAGTACAACTT+TGG | 0.466620 | 4.2:-12714860 | None:intergenic |
ATGCGAGGTGTATGAGAGGA+AGG | 0.466661 | 4.2:-12714263 | None:intergenic |
TCATAGGGTTGAACAAAGTT+GGG | 0.470111 | 4.2:-12715240 | None:intergenic |
AACAAAGCTTCACCCAGATC+TGG | 0.480250 | 4.2:-12715067 | None:intergenic |
AGGCCTTGCCTTTAGAAAAG+AGG | 0.480556 | 4.2:-12715162 | None:intergenic |
CAAGGCCAAAAGCTGTTGGC+AGG | 0.480865 | 4.2:-12715217 | None:intergenic |
ACGATGATATAATTCTTCAC+AGG | 0.485882 | 4.2:+12714759 | MS.gene08770:CDS |
AAGCAGTTAGTAGAATATGA+TGG | 0.489008 | 4.2:+12714923 | MS.gene08770:CDS |
GACAAGTGGTGATGAGGTGC+TGG | 0.521829 | 4.2:-12714335 | None:intergenic |
AACTTCTCATTGTTAGCTCA+AGG | 0.527852 | 4.2:+12715109 | MS.gene08770:CDS |
CAGGGAACAACTTTATGTTG+TGG | 0.530035 | 4.2:+12714778 | MS.gene08770:CDS |
GGATGATGATGATGTATACA+TGG | 0.546547 | 4.2:+12714733 | MS.gene08770:CDS |
TGGTTTGATGTGCCAGATCT+GGG | 0.557600 | 4.2:+12715055 | MS.gene08770:CDS |
TGAACCAACTTCAAAGTCAA+AGG | 0.569063 | 4.2:-12714830 | None:intergenic |
GTGTATGAGAGGAAGGAGAA+GGG | 0.571011 | 4.2:-12714256 | None:intergenic |
GGTGTATGAGAGGAAGGAGA+AGG | 0.571544 | 4.2:-12714257 | None:intergenic |
TCATAAGCAATATTTATACA+AGG | 0.574589 | 4.2:+12714988 | MS.gene08770:CDS |
CGATGATATAATTCTTCACA+GGG | 0.575649 | 4.2:+12714760 | MS.gene08770:CDS |
TAGGAATAAGCAGCACATAT+GGG | 0.577725 | 4.2:+12714880 | MS.gene08770:CDS |
TCCCAAGACATATCCATCCC+CGG | 0.579489 | 4.2:+12714451 | MS.gene08770:CDS |
TGGAATGCGAGGTGTATGAG+AGG | 0.599874 | 4.2:-12714267 | None:intergenic |
CAACTTCTTCTAATAAAGGG+TGG | 0.603116 | 4.2:+12714369 | MS.gene08770:CDS |
TATAAGCTTGATCAAGAATG+GGG | 0.611541 | 4.2:+12715028 | MS.gene08770:CDS |
GATGAGGTGCTGGTTCAATA+CGG | 0.613928 | 4.2:-12714325 | None:intergenic |
TGGGCAAGGCCAAAAGCTGT+TGG | 0.617625 | 4.2:-12715221 | None:intergenic |
TATTTAAGATATGGAATGCG+AGG | 0.626977 | 4.2:-12714278 | None:intergenic |
TTGAAGTTGAAGTTGACAAG+TGG | 0.628065 | 4.2:-12714349 | None:intergenic |
GGGTTGAACAAAGTTGGGCA+AGG | 0.633410 | 4.2:-12715235 | None:intergenic |
GAAGTTGACAAGTGGTGATG+AGG | 0.653864 | 4.2:-12714341 | None:intergenic |
ATGATAACAAGATGGTGCAA+TGG | 0.658156 | 4.2:+12714129 | MS.gene08770:CDS |
TGTTATGTATGATAACAAGA+TGG | 0.674368 | 4.2:+12714121 | MS.gene08770:CDS |
GATGATGATGATGTATACAT+GGG | 0.676311 | 4.2:+12714734 | MS.gene08770:CDS |
ATAACTTTACAACCACTAAG+CGG | 0.718475 | 4.2:-12714620 | None:intergenic |
ATATGATGGAAGTCTCTATG+TGG | 0.736365 | 4.2:+12714937 | MS.gene08770:CDS |
AATTTCTCTAGATATCAAGG+TGG | 0.780792 | 4.2:+12714581 | MS.gene08770:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TGTAGAAAATATTTAAGATA+TGG | - | chr4.2:12714290-12714309 | None:intergenic | 15.0% |
!! | TAAGAAAACAACCATAATAA+TGG | + | chr4.2:12714712-12714731 | MS.gene08770:CDS | 20.0% |
!! | TCATAAGCAATATTTATACA+AGG | + | chr4.2:12714988-12715007 | MS.gene08770:CDS | 20.0% |
!!! | TCATCAAATTCAATACTTTT+TGG | - | chr4.2:12714517-12714536 | None:intergenic | 20.0% |
! | AAGATCAAAGAGAAAAAGTT+TGG | - | chr4.2:12714426-12714445 | None:intergenic | 25.0% |
! | ACTTCAACTTCTTCTAATAA+AGG | + | chr4.2:12714365-12714384 | MS.gene08770:CDS | 25.0% |
! | ATAACTAACCATAACTCTTT+GGG | - | chr4.2:12714164-12714183 | None:intergenic | 25.0% |
! | ATCATCATCATCCATTATTA+TGG | - | chr4.2:12714726-12714745 | None:intergenic | 25.0% |
! | ATTCTCCAAATTGAAACAAT+AGG | - | chr4.2:12715185-12715204 | None:intergenic | 25.0% |
! | CATAATTTCTCTAGATATCA+AGG | + | chr4.2:12714578-12714597 | MS.gene08770:CDS | 25.0% |
! | CTTCAACTTCTTCTAATAAA+GGG | + | chr4.2:12714366-12714385 | MS.gene08770:CDS | 25.0% |
! | TATAACTAACCATAACTCTT+TGG | - | chr4.2:12714165-12714184 | None:intergenic | 25.0% |
! | TGTTATGTATGATAACAAGA+TGG | + | chr4.2:12714121-12714140 | MS.gene08770:CDS | 25.0% |
! | TTATAAGCTTGATCAAGAAT+GGG | + | chr4.2:12715027-12715046 | MS.gene08770:CDS | 25.0% |
! | TTTATAAGCTTGATCAAGAA+TGG | + | chr4.2:12715026-12715045 | MS.gene08770:CDS | 25.0% |
!!! | CAATACGGTATATTTTAGTT+TGG | - | chr4.2:12714313-12714332 | None:intergenic | 25.0% |
AAAGTGCATGTTTGCAATAT+TGG | + | chr4.2:12714686-12714705 | MS.gene08770:CDS | 30.0% | |
AAGCAGTTAGTAGAATATGA+TGG | + | chr4.2:12714923-12714942 | MS.gene08770:CDS | 30.0% | |
AATTTCTCTAGATATCAAGG+TGG | + | chr4.2:12714581-12714600 | MS.gene08770:CDS | 30.0% | |
ACGATGATATAATTCTTCAC+AGG | + | chr4.2:12714759-12714778 | MS.gene08770:CDS | 30.0% | |
ATAACTTTACAACCACTAAG+CGG | - | chr4.2:12714623-12714642 | None:intergenic | 30.0% | |
ATCAAAGAGAAAAAGTTTGG+AGG | - | chr4.2:12714423-12714442 | None:intergenic | 30.0% | |
CGATGATATAATTCTTCACA+GGG | + | chr4.2:12714760-12714779 | MS.gene08770:CDS | 30.0% | |
CTTTATGTTGTGGATGAAAA+CGG | + | chr4.2:12714788-12714807 | MS.gene08770:CDS | 30.0% | |
GTTTCAATTTGGAGAATTCA+AGG | + | chr4.2:12715188-12715207 | MS.gene08770:CDS | 30.0% | |
TAAATCTTCCCAAAGAGTTA+TGG | + | chr4.2:12714153-12714172 | MS.gene08770:CDS | 30.0% | |
TATAAGCTTGATCAAGAATG+GGG | + | chr4.2:12715028-12715047 | MS.gene08770:CDS | 30.0% | |
TTTATGTTGTGGATGAAAAC+GGG | + | chr4.2:12714789-12714808 | MS.gene08770:CDS | 30.0% | |
! | GATGATGATGATGTATACAT+GGG | + | chr4.2:12714734-12714753 | MS.gene08770:CDS | 30.0% |
! | TATTTAAGATATGGAATGCG+AGG | - | chr4.2:12714281-12714300 | None:intergenic | 30.0% |
! | TGCATTTACCTCTTTTCTAA+AGG | + | chr4.2:12715154-12715173 | MS.gene08770:CDS | 30.0% |
! | TTTGATGAACTTTCGATTTG+TGG | + | chr4.2:12714529-12714548 | MS.gene08770:CDS | 30.0% |
! | TTTTTGGATAGTTTTCTCCT+GGG | - | chr4.2:12714501-12714520 | None:intergenic | 30.0% |
AACTTCTCATTGTTAGCTCA+AGG | + | chr4.2:12715109-12715128 | MS.gene08770:CDS | 35.0% | |
ATAGGAATAAGCAGCACATA+TGG | + | chr4.2:12714879-12714898 | MS.gene08770:CDS | 35.0% | |
ATCATAGGGTTGAACAAAGT+TGG | - | chr4.2:12715244-12715263 | None:intergenic | 35.0% | |
ATGATAACAAGATGGTGCAA+TGG | + | chr4.2:12714129-12714148 | MS.gene08770:CDS | 35.0% | |
CAAAGTTGTACTGTTGTGAT+AGG | + | chr4.2:12714861-12714880 | MS.gene08770:CDS | 35.0% | |
CAACTTCTTCTAATAAAGGG+TGG | + | chr4.2:12714369-12714388 | MS.gene08770:CDS | 35.0% | |
CAAGGCCTATTGTTTCAATT+TGG | + | chr4.2:12715177-12715196 | MS.gene08770:CDS | 35.0% | |
CTATCACAACAGTACAACTT+TGG | - | chr4.2:12714863-12714882 | None:intergenic | 35.0% | |
TAGGAATAAGCAGCACATAT+GGG | + | chr4.2:12714880-12714899 | MS.gene08770:CDS | 35.0% | |
TCATAGGGTTGAACAAAGTT+GGG | - | chr4.2:12715243-12715262 | None:intergenic | 35.0% | |
TGAACCAACTTCAAAGTCAA+AGG | - | chr4.2:12714833-12714852 | None:intergenic | 35.0% | |
TTGAAGTTGAAGTTGACAAG+TGG | - | chr4.2:12714352-12714371 | None:intergenic | 35.0% | |
TTGATCAAGAATGGGGTAAA+TGG | + | chr4.2:12715035-12715054 | MS.gene08770:CDS | 35.0% | |
TTGTTAGCTCAAGGCTATTA+TGG | + | chr4.2:12715118-12715137 | MS.gene08770:CDS | 35.0% | |
! | ATATGATGGAAGTCTCTATG+TGG | + | chr4.2:12714937-12714956 | MS.gene08770:CDS | 35.0% |
! | ATGAAAACGGGACAATTTTC+TGG | + | chr4.2:12714801-12714820 | MS.gene08770:CDS | 35.0% |
! | CTTTTTGGATAGTTTTCTCC+TGG | - | chr4.2:12714502-12714521 | None:intergenic | 35.0% |
! | GGATGATGATGATGTATACA+TGG | + | chr4.2:12714733-12714752 | MS.gene08770:CDS | 35.0% |
!! | CAATCCTTTGACTTTGAAGT+TGG | + | chr4.2:12714826-12714845 | MS.gene08770:CDS | 35.0% |
!! | TTACCTCTTTTCTAAAGGCA+AGG | + | chr4.2:12715159-12715178 | MS.gene08770:CDS | 35.0% |
!!! | GGTGAAGCTTTGTTTGTTTT+GGG | + | chr4.2:12715076-12715095 | MS.gene08770:CDS | 35.0% |
CAGGGAACAACTTTATGTTG+TGG | + | chr4.2:12714778-12714797 | MS.gene08770:CDS | 40.0% | |
CGATTTGTGGAGTTGTTTGA+AGG | + | chr4.2:12714542-12714561 | MS.gene08770:CDS | 40.0% | |
! | GTGGCTCATAAAACTTGTTC+AGG | + | chr4.2:12714388-12714407 | MS.gene08770:CDS | 40.0% |
! | TCTCCTGGGATGATACTTTT+TGG | - | chr4.2:12714487-12714506 | None:intergenic | 40.0% |
!! | CTCCTGGGATGATACTTTTT+GGG | - | chr4.2:12714486-12714505 | None:intergenic | 40.0% |
!!! | ACTTTTTGGGTGGTTTTCTC+CGG | - | chr4.2:12714473-12714492 | None:intergenic | 40.0% |
!!! | GGGTGAAGCTTTGTTTGTTT+TGG | + | chr4.2:12715075-12715094 | MS.gene08770:CDS | 40.0% |
AACAAAGCTTCACCCAGATC+TGG | - | chr4.2:12715070-12715089 | None:intergenic | 45.0% | |
ATGGTTTGATGTGCCAGATC+TGG | + | chr4.2:12715054-12715073 | MS.gene08770:CDS | 45.0% | |
GTGTATGAGAGGAAGGAGAA+GGG | - | chr4.2:12714259-12714278 | None:intergenic | 45.0% | |
TGGTTTGATGTGCCAGATCT+GGG | + | chr4.2:12715055-12715074 | MS.gene08770:CDS | 45.0% | |
TTTCAGTATGCACCGCTTAG+TGG | + | chr4.2:12714608-12714627 | MS.gene08770:CDS | 45.0% | |
! | AGGCCTTGCCTTTAGAAAAG+AGG | - | chr4.2:12715165-12715184 | None:intergenic | 45.0% |
! | GAAGTTGACAAGTGGTGATG+AGG | - | chr4.2:12714344-12714363 | None:intergenic | 45.0% |
!! | CACCCAAAAAGTATCATCCC+AGG | + | chr4.2:12714481-12714500 | MS.gene08770:CDS | 45.0% |
!! | CTGGGATGATACTTTTTGGG+TGG | - | chr4.2:12714483-12714502 | None:intergenic | 45.0% |
!! | GATGAGGTGCTGGTTCAATA+CGG | - | chr4.2:12714328-12714347 | None:intergenic | 45.0% |
!!! | CTTTTTGGGTGGTTTTCTCC+GGG | - | chr4.2:12714472-12714491 | None:intergenic | 45.0% |
!!! | TTTTTGGGTGGTTTTCTCCG+GGG | - | chr4.2:12714471-12714490 | None:intergenic | 45.0% |
ATGCGAGGTGTATGAGAGGA+AGG | - | chr4.2:12714266-12714285 | None:intergenic | 50.0% | |
GGGACAAGAGAGCGACATAA+AGG | - | chr4.2:12714239-12714258 | None:intergenic | 50.0% | |
GGGTTGAACAAAGTTGGGCA+AGG | - | chr4.2:12715238-12715257 | None:intergenic | 50.0% | |
GGTGTATGAGAGGAAGGAGA+AGG | - | chr4.2:12714260-12714279 | None:intergenic | 50.0% | |
TCCCAAGACATATCCATCCC+CGG | + | chr4.2:12714451-12714470 | MS.gene08770:CDS | 50.0% | |
TCCGGGGATGGATATGTCTT+GGG | - | chr4.2:12714455-12714474 | None:intergenic | 50.0% | |
TGGAATGCGAGGTGTATGAG+AGG | - | chr4.2:12714270-12714289 | None:intergenic | 50.0% | |
! | GTAAGCCTGCCAACAGCTTT+TGG | + | chr4.2:12715212-12715231 | MS.gene08770:CDS | 50.0% |
CAAGGCCAAAAGCTGTTGGC+AGG | - | chr4.2:12715220-12715239 | None:intergenic | 55.0% | |
CTCCGGGGATGGATATGTCT+TGG | - | chr4.2:12714456-12714475 | None:intergenic | 55.0% | |
TGGGCAAGGCCAAAAGCTGT+TGG | - | chr4.2:12715224-12715243 | None:intergenic | 55.0% | |
! | GACAAGTGGTGATGAGGTGC+TGG | - | chr4.2:12714338-12714357 | None:intergenic | 55.0% |
! | TGGGTGGTTTTCTCCGGGGA+TGG | - | chr4.2:12714467-12714486 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 12714110 | 12715270 | 12714110 | ID=MS.gene08770 |
chr4.2 | mRNA | 12714110 | 12715270 | 12714110 | ID=MS.gene08770.t1;Parent=MS.gene08770 |
chr4.2 | exon | 12714110 | 12715270 | 12714110 | ID=MS.gene08770.t1.exon1;Parent=MS.gene08770.t1 |
chr4.2 | CDS | 12714110 | 12715270 | 12714110 | ID=cds.MS.gene08770.t1;Parent=MS.gene08770.t1 |
Gene Sequence |
Protein sequence |