Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049886.t1 | XP_003629719.2 | 92 | 376 | 28 | 1 | 1 | 376 | 11 | 384 | 3.80E-206 | 727.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049886.t1 | Q1PEZ8 | 30.3 | 346 | 201 | 8 | 3 | 341 | 5 | 317 | 9.5e-33 | 142.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049886.t1 | G7LIM0 | 92.0 | 376 | 28 | 1 | 1 | 376 | 11 | 384 | 2.7e-206 | 727.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene049886 | MS.gene39445 | PPI |
| MS.gene64423 | MS.gene049886 | PPI |
| MS.gene049886 | MS.gene064059 | PPI |
| MS.gene049886 | MS.gene08770 | PPI |
| MS.gene049886 | MS.gene025209 | PPI |
| MS.gene037197 | MS.gene049886 | PPI |
| MS.gene30094 | MS.gene049886 | PPI |
| MS.gene049886 | MS.gene28904 | PPI |
| MS.gene049886 | MS.gene66307 | PPI |
| MS.gene91760 | MS.gene049886 | PPI |
| MS.gene28903 | MS.gene049886 | PPI |
| MS.gene23497 | MS.gene049886 | PPI |
| MS.gene23495 | MS.gene049886 | PPI |
| MS.gene049886 | MS.gene023531 | PPI |
| MS.gene44191 | MS.gene049886 | PPI |
| MS.gene049886 | MS.gene018718 | PPI |
| MS.gene44190 | MS.gene049886 | PPI |
| MS.gene049886 | MS.gene017581 | PPI |
| MS.gene97013 | MS.gene049886 | PPI |
| MS.gene012159 | MS.gene049886 | PPI |
| MS.gene049886 | MS.gene012160 | PPI |
| MS.gene049886 | MS.gene017582 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049886.t1 | MTR_8g085760 | 93.883 | 376 | 21 | 1 | 1 | 376 | 11 | 384 | 0.0 | 733 |
| MS.gene049886.t1 | MTR_7g096720 | 53.264 | 383 | 149 | 10 | 6 | 375 | 16 | 381 | 7.30e-127 | 370 |
| MS.gene049886.t1 | MTR_4g088925 | 50.135 | 371 | 153 | 9 | 11 | 374 | 34 | 379 | 1.06e-106 | 318 |
| MS.gene049886.t1 | MTR_6g092570 | 41.710 | 386 | 166 | 15 | 2 | 372 | 7 | 348 | 1.85e-76 | 241 |
| MS.gene049886.t1 | MTR_5g079830 | 40.270 | 370 | 169 | 12 | 1 | 357 | 4 | 334 | 2.36e-68 | 221 |
| MS.gene049886.t1 | MTR_2g041510 | 35.825 | 388 | 193 | 14 | 2 | 367 | 5 | 358 | 3.42e-52 | 178 |
| MS.gene049886.t1 | MTR_2g041510 | 35.825 | 388 | 193 | 14 | 2 | 367 | 25 | 378 | 4.56e-52 | 178 |
| MS.gene049886.t1 | MTR_8g074610 | 34.278 | 388 | 207 | 13 | 1 | 367 | 23 | 383 | 6.60e-52 | 178 |
| MS.gene049886.t1 | MTR_8g074640 | 32.984 | 382 | 196 | 12 | 2 | 356 | 5 | 353 | 1.92e-48 | 168 |
| MS.gene049886.t1 | MTR_4g125090 | 35.976 | 328 | 146 | 13 | 2 | 323 | 44 | 313 | 2.26e-43 | 153 |
| MS.gene049886.t1 | MTR_7g096760 | 56.989 | 93 | 37 | 3 | 224 | 314 | 2 | 93 | 2.83e-24 | 97.1 |
| MS.gene049886.t1 | MTR_3g030050 | 23.371 | 445 | 223 | 17 | 1 | 368 | 14 | 417 | 4.14e-16 | 79.7 |
| MS.gene049886.t1 | MTR_1g026850 | 24.365 | 394 | 233 | 14 | 2 | 368 | 5 | 360 | 7.11e-14 | 72.4 |
| MS.gene049886.t1 | MTR_3g029620 | 23.558 | 416 | 223 | 18 | 1 | 368 | 1 | 369 | 4.69e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049886.t1 | AT2G26160 | 30.347 | 346 | 201 | 8 | 3 | 341 | 5 | 317 | 5.60e-40 | 144 |
| MS.gene049886.t1 | AT4G35733 | 27.177 | 379 | 237 | 8 | 4 | 373 | 7 | 355 | 3.04e-33 | 127 |
| MS.gene049886.t1 | AT1G44080 | 27.095 | 358 | 215 | 8 | 2 | 355 | 4 | 319 | 9.56e-30 | 117 |
| MS.gene049886.t1 | AT1G65770 | 27.649 | 387 | 197 | 13 | 1 | 356 | 1 | 335 | 2.83e-29 | 116 |
| MS.gene049886.t1 | AT1G65740 | 26.810 | 373 | 230 | 12 | 1 | 356 | 1 | 347 | 5.34e-25 | 105 |
| MS.gene049886.t1 | AT3G25750 | 26.934 | 349 | 214 | 13 | 2 | 342 | 4 | 319 | 3.04e-23 | 100 |
| MS.gene049886.t1 | AT3G25750 | 26.453 | 344 | 208 | 12 | 2 | 342 | 4 | 305 | 1.12e-22 | 98.2 |
| MS.gene049886.t1 | AT2G17030 | 26.374 | 364 | 199 | 13 | 1 | 330 | 1 | 329 | 1.88e-21 | 95.5 |
| MS.gene049886.t1 | AT1G57906 | 28.755 | 233 | 129 | 8 | 128 | 333 | 6 | 228 | 6.48e-13 | 68.2 |
| MS.gene049886.t1 | AT2G17036 | 23.011 | 352 | 213 | 11 | 1 | 326 | 1 | 320 | 4.92e-11 | 64.3 |
Find 68 sgRNAs with CRISPR-Local
Find 85 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGTGCATGTTTGCAATAT+TGG | 0.191961 | 4.3:-15105931 | MS.gene049886:CDS |
| ACTTCAACTTCTTCTAATAA+AGG | 0.233510 | 4.3:-15106252 | MS.gene049886:CDS |
| CAAGGCCTATTGTTTCAATT+TGG | 0.239371 | 4.3:-15105440 | MS.gene049886:CDS |
| CTTGCAAATTATTTGATCAT+AGG | 0.244392 | 4.3:+15105361 | None:intergenic |
| GGGTGAAGCTTTGTTTGTTT+TGG | 0.247417 | 4.3:-15105542 | MS.gene049886:CDS |
| ATCATCATCATCCATTATTA+TGG | 0.249406 | 4.3:+15105894 | None:intergenic |
| TATAACTAACCATAACTCTT+TGG | 0.271598 | 4.3:+15106455 | None:intergenic |
| TTGTTAGCTCAAGGCTATTA+TGG | 0.272989 | 4.3:-15105499 | MS.gene049886:CDS |
| TTGATCAAGAATGGGGTAAA+TGG | 0.295549 | 4.3:-15105582 | MS.gene049886:CDS |
| TGTAGAAAATATTTAAGATA+TGG | 0.319060 | 4.3:+15106330 | None:intergenic |
| GTAAGCCTGCCAACAGCTTT+TGG | 0.333990 | 4.3:-15105405 | MS.gene049886:CDS |
| ATTCTCCAAATTGAAACAAT+AGG | 0.348900 | 4.3:+15105435 | None:intergenic |
| ATCATAGGGTTGAACAAAGT+TGG | 0.349987 | 4.3:+15105376 | None:intergenic |
| CTTTATGTTGTGGATGAAAA+CGG | 0.357862 | 4.3:-15105829 | MS.gene049886:CDS |
| CTCCGGGGATGGATATGTCT+TGG | 0.358073 | 4.3:+15106164 | None:intergenic |
| TAAGAAAACAACCATAATAA+TGG | 0.362578 | 4.3:-15105905 | MS.gene049886:CDS |
| CTTCAACTTCTTCTAATAAA+GGG | 0.370190 | 4.3:-15106251 | MS.gene049886:CDS |
| TTTATAAGCTTGATCAAGAA+TGG | 0.373053 | 4.3:-15105591 | MS.gene049886:CDS |
| TTTGATGAACTTTCGATTTG+TGG | 0.374755 | 4.3:-15106088 | MS.gene049886:CDS |
| ATGGTTTGATGTGCCAGATC+TGG | 0.383540 | 4.3:-15105563 | MS.gene049886:CDS |
| CAATCCTTTGACTTTGAAGT+TGG | 0.391090 | 4.3:-15105791 | MS.gene049886:CDS |
| GTGGCTCATAAAACTTGTTC+AGG | 0.397814 | 4.3:-15106229 | MS.gene049886:CDS |
| ATAACTAACCATAACTCTTT+GGG | 0.402986 | 4.3:+15106456 | None:intergenic |
| TTTATGTTGTGGATGAAAAC+GGG | 0.411799 | 4.3:-15105828 | MS.gene049886:CDS |
| TCCGGGGATGGATATGTCTT+GGG | 0.419316 | 4.3:+15106165 | None:intergenic |
| CAAAGTTGTACTGTTGTGAT+AGG | 0.419830 | 4.3:-15105756 | MS.gene049886:CDS |
| TTTCAGTATGCACCGCTTAG+TGG | 0.421484 | 4.3:-15106009 | MS.gene049886:CDS |
| ATAGGAATAAGCAGCACATA+TGG | 0.421633 | 4.3:-15105738 | MS.gene049886:CDS |
| TAAATCTTCCCAAAGAGTTA+TGG | 0.424821 | 4.3:-15106464 | MS.gene049886:CDS |
| TTGCAAATTATTTGATCATA+GGG | 0.438640 | 4.3:+15105362 | None:intergenic |
| TTATAAGCTTGATCAAGAAT+GGG | 0.444146 | 4.3:-15105590 | MS.gene049886:CDS |
| GTTTCAATTTGGAGAATTCA+AGG | 0.444647 | 4.3:-15105429 | MS.gene049886:CDS |
| CGATTTGTGGAGTTGTTTGA+AGG | 0.445651 | 4.3:-15106075 | MS.gene049886:CDS |
| CATAATTTCTCTAGATATCA+AGG | 0.448445 | 4.3:-15106039 | MS.gene049886:CDS |
| CTATCACAACAGTACAACTT+TGG | 0.466620 | 4.3:+15105757 | None:intergenic |
| ATGCGAGGTGTATGAGAGGA+AGG | 0.466661 | 4.3:+15106354 | None:intergenic |
| TCATAGGGTTGAACAAAGTT+GGG | 0.470111 | 4.3:+15105377 | None:intergenic |
| GACAAGTGGTGATGTGGTGC+TGG | 0.477374 | 4.3:+15106282 | None:intergenic |
| AACAAAGCTTCACCCAGATC+TGG | 0.480250 | 4.3:+15105550 | None:intergenic |
| AGGCCTTGCCTTTAGAAAAG+AGG | 0.480556 | 4.3:+15105455 | None:intergenic |
| CAAGGCCAAAAGCTGTTGGC+AGG | 0.480865 | 4.3:+15105400 | None:intergenic |
| ACGATGATATAATTCTTCAC+AGG | 0.485882 | 4.3:-15105858 | MS.gene049886:CDS |
| AAGCAGTTAGTAGAATATGA+TGG | 0.489008 | 4.3:-15105694 | MS.gene049886:CDS |
| AACTTCTCATTGTTAGCTCA+AGG | 0.527852 | 4.3:-15105508 | MS.gene049886:CDS |
| CAGGGAACAACTTTATGTTG+TGG | 0.530035 | 4.3:-15105839 | MS.gene049886:CDS |
| GGATGATGATGATGTATACA+TGG | 0.546547 | 4.3:-15105884 | MS.gene049886:CDS |
| TGGTTTGATGTGCCAGATCT+GGG | 0.557600 | 4.3:-15105562 | MS.gene049886:CDS |
| TGAACCAACTTCAAAGTCAA+AGG | 0.569063 | 4.3:+15105787 | None:intergenic |
| GTGTATGAGAGGAAGGAGAA+GGG | 0.571011 | 4.3:+15106361 | None:intergenic |
| GGTGTATGAGAGGAAGGAGA+AGG | 0.571544 | 4.3:+15106360 | None:intergenic |
| TCATAAGCAATATTTATACA+AGG | 0.574589 | 4.3:-15105629 | MS.gene049886:CDS |
| CGATGATATAATTCTTCACA+GGG | 0.575649 | 4.3:-15105857 | MS.gene049886:CDS |
| TAGGAATAAGCAGCACATAT+GGG | 0.577725 | 4.3:-15105737 | MS.gene049886:CDS |
| TCCCAAGACATATCCATCCC+CGG | 0.579489 | 4.3:-15106166 | MS.gene049886:CDS |
| TGGAATGCGAGGTGTATGAG+AGG | 0.599874 | 4.3:+15106350 | None:intergenic |
| CAACTTCTTCTAATAAAGGG+TGG | 0.603116 | 4.3:-15106248 | MS.gene049886:CDS |
| TATAAGCTTGATCAAGAATG+GGG | 0.611541 | 4.3:-15105589 | MS.gene049886:CDS |
| TGGGCAAGGCCAAAAGCTGT+TGG | 0.617625 | 4.3:+15105396 | None:intergenic |
| TATTTAAGATATGGAATGCG+AGG | 0.626977 | 4.3:+15106339 | None:intergenic |
| TTGAAGTTGAAGTTGACAAG+TGG | 0.628065 | 4.3:+15106268 | None:intergenic |
| GATGTGGTGCTGGTTCAATA+CGG | 0.633371 | 4.3:+15106292 | None:intergenic |
| GGGTTGAACAAAGTTGGGCA+AGG | 0.633410 | 4.3:+15105382 | None:intergenic |
| GAAGTTGACAAGTGGTGATG+TGG | 0.649377 | 4.3:+15106276 | None:intergenic |
| ATGATAACAAGATGGTGCAA+TGG | 0.658156 | 4.3:-15106488 | None:intergenic |
| GATGATGATGATGTATACAT+GGG | 0.676311 | 4.3:-15105883 | MS.gene049886:CDS |
| ATAACTTTGCAACCACTAAG+CGG | 0.690267 | 4.3:+15105997 | None:intergenic |
| ATATGATGGAAGTCTCTATG+TGG | 0.736365 | 4.3:-15105680 | MS.gene049886:CDS |
| AATTTCTCTAGATATCAAGG+TGG | 0.780792 | 4.3:-15106036 | MS.gene049886:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTAGAAAATATTTAAGATA+TGG | + | chr4.3:15105519-15105538 | None:intergenic | 15.0% |
| !! | TAAGAAAACAACCATAATAA+TGG | - | chr4.3:15105941-15105960 | MS.gene049886:CDS | 20.0% |
| !! | TCATAAGCAATATTTATACA+AGG | - | chr4.3:15106217-15106236 | MS.gene049886:CDS | 20.0% |
| !!! | TCATCAAATTCAATACTTTT+TGG | + | chr4.3:15105746-15105765 | None:intergenic | 20.0% |
| ! | AAGATCAAAGAGAAAAAGTT+TGG | + | chr4.3:15105655-15105674 | None:intergenic | 25.0% |
| ! | ACTTCAACTTCTTCTAATAA+AGG | - | chr4.3:15105594-15105613 | MS.gene049886:CDS | 25.0% |
| ! | ATAACTAACCATAACTCTTT+GGG | + | chr4.3:15105393-15105412 | None:intergenic | 25.0% |
| ! | ATCATCATCATCCATTATTA+TGG | + | chr4.3:15105955-15105974 | None:intergenic | 25.0% |
| ! | ATTCTCCAAATTGAAACAAT+AGG | + | chr4.3:15106414-15106433 | None:intergenic | 25.0% |
| ! | CATAATTTCTCTAGATATCA+AGG | - | chr4.3:15105807-15105826 | MS.gene049886:CDS | 25.0% |
| ! | CTTCAACTTCTTCTAATAAA+GGG | - | chr4.3:15105595-15105614 | MS.gene049886:CDS | 25.0% |
| ! | TATAACTAACCATAACTCTT+TGG | + | chr4.3:15105394-15105413 | None:intergenic | 25.0% |
| ! | TTATAAGCTTGATCAAGAAT+GGG | - | chr4.3:15106256-15106275 | MS.gene049886:CDS | 25.0% |
| ! | TTTATAAGCTTGATCAAGAA+TGG | - | chr4.3:15106255-15106274 | MS.gene049886:CDS | 25.0% |
| !!! | ACATTATTTTTACACTGCAT+AGG | - | chr4.3:15105886-15105905 | MS.gene049886:CDS | 25.0% |
| !!! | CAATACGGTATATTTTAGTT+TGG | + | chr4.3:15105542-15105561 | None:intergenic | 25.0% |
| !!! | CATTATTTTTACACTGCATA+GGG | - | chr4.3:15105887-15105906 | MS.gene049886:CDS | 25.0% |
| AAAGTGCATGTTTGCAATAT+TGG | - | chr4.3:15105915-15105934 | MS.gene049886:CDS | 30.0% | |
| AAGCAGTTAGTAGAATATGA+TGG | - | chr4.3:15106152-15106171 | MS.gene049886:CDS | 30.0% | |
| AATTTCTCTAGATATCAAGG+TGG | - | chr4.3:15105810-15105829 | MS.gene049886:CDS | 30.0% | |
| ACGATGATATAATTCTTCAC+AGG | - | chr4.3:15105988-15106007 | MS.gene049886:CDS | 30.0% | |
| ATCAAAGAGAAAAAGTTTGG+AGG | + | chr4.3:15105652-15105671 | None:intergenic | 30.0% | |
| CGATGATATAATTCTTCACA+GGG | - | chr4.3:15105989-15106008 | MS.gene049886:CDS | 30.0% | |
| CTTTATGTTGTGGATGAAAA+CGG | - | chr4.3:15106017-15106036 | MS.gene049886:CDS | 30.0% | |
| GTTTCAATTTGGAGAATTCA+AGG | - | chr4.3:15106417-15106436 | MS.gene049886:CDS | 30.0% | |
| TAAATCTTCCCAAAGAGTTA+TGG | - | chr4.3:15105382-15105401 | MS.gene049886:CDS | 30.0% | |
| TATAAGCTTGATCAAGAATG+GGG | - | chr4.3:15106257-15106276 | MS.gene049886:CDS | 30.0% | |
| TTTATGTTGTGGATGAAAAC+GGG | - | chr4.3:15106018-15106037 | MS.gene049886:CDS | 30.0% | |
| ! | GATGATGATGATGTATACAT+GGG | - | chr4.3:15105963-15105982 | MS.gene049886:CDS | 30.0% |
| ! | TATTTAAGATATGGAATGCG+AGG | + | chr4.3:15105510-15105529 | None:intergenic | 30.0% |
| ! | TGCATTTACCTCTTTTCTAA+AGG | - | chr4.3:15106383-15106402 | MS.gene049886:CDS | 30.0% |
| ! | TTTGATGAACTTTCGATTTG+TGG | - | chr4.3:15105758-15105777 | MS.gene049886:CDS | 30.0% |
| ! | TTTTTGGATAGTTTTCTCCT+GGG | + | chr4.3:15105730-15105749 | None:intergenic | 30.0% |
| AACTTCTCATTGTTAGCTCA+AGG | - | chr4.3:15106338-15106357 | MS.gene049886:CDS | 35.0% | |
| ATAACTTTGCAACCACTAAG+CGG | + | chr4.3:15105852-15105871 | None:intergenic | 35.0% | |
| ATAGGAATAAGCAGCACATA+TGG | - | chr4.3:15106108-15106127 | MS.gene049886:CDS | 35.0% | |
| ATCATAGGGTTGAACAAAGT+TGG | + | chr4.3:15106473-15106492 | None:intergenic | 35.0% | |
| CAAAGTTGTACTGTTGTGAT+AGG | - | chr4.3:15106090-15106109 | MS.gene049886:CDS | 35.0% | |
| CAACTTCTTCTAATAAAGGG+TGG | - | chr4.3:15105598-15105617 | MS.gene049886:CDS | 35.0% | |
| CAAGGCCTATTGTTTCAATT+TGG | - | chr4.3:15106406-15106425 | MS.gene049886:CDS | 35.0% | |
| CTATCACAACAGTACAACTT+TGG | + | chr4.3:15106092-15106111 | None:intergenic | 35.0% | |
| TAGGAATAAGCAGCACATAT+GGG | - | chr4.3:15106109-15106128 | MS.gene049886:CDS | 35.0% | |
| TCATAGGGTTGAACAAAGTT+GGG | + | chr4.3:15106472-15106491 | None:intergenic | 35.0% | |
| TGAACCAACTTCAAAGTCAA+AGG | + | chr4.3:15106062-15106081 | None:intergenic | 35.0% | |
| TTGAAGTTGAAGTTGACAAG+TGG | + | chr4.3:15105581-15105600 | None:intergenic | 35.0% | |
| TTGATCAAGAATGGGGTAAA+TGG | - | chr4.3:15106264-15106283 | MS.gene049886:CDS | 35.0% | |
| TTGTTAGCTCAAGGCTATTA+TGG | - | chr4.3:15106347-15106366 | MS.gene049886:CDS | 35.0% | |
| ! | ATATGATGGAAGTCTCTATG+TGG | - | chr4.3:15106166-15106185 | MS.gene049886:CDS | 35.0% |
| ! | ATGAAAACGGGACAATTTTC+TGG | - | chr4.3:15106030-15106049 | MS.gene049886:CDS | 35.0% |
| ! | CTTTTTGGATAGTTTTCTCC+TGG | + | chr4.3:15105731-15105750 | None:intergenic | 35.0% |
| ! | GGATGATGATGATGTATACA+TGG | - | chr4.3:15105962-15105981 | MS.gene049886:CDS | 35.0% |
| !! | CAATCCTTTGACTTTGAAGT+TGG | - | chr4.3:15106055-15106074 | MS.gene049886:CDS | 35.0% |
| !! | TTACCTCTTTTCTAAAGGCA+AGG | - | chr4.3:15106388-15106407 | MS.gene049886:CDS | 35.0% |
| !!! | GGTGAAGCTTTGTTTGTTTT+GGG | - | chr4.3:15106305-15106324 | MS.gene049886:CDS | 35.0% |
| CAGGGAACAACTTTATGTTG+TGG | - | chr4.3:15106007-15106026 | MS.gene049886:CDS | 40.0% | |
| CGATTTGTGGAGTTGTTTGA+AGG | - | chr4.3:15105771-15105790 | MS.gene049886:CDS | 40.0% | |
| ! | GTGGCTCATAAAACTTGTTC+AGG | - | chr4.3:15105617-15105636 | MS.gene049886:CDS | 40.0% |
| ! | TCTCCTGGGATGATACTTTT+TGG | + | chr4.3:15105716-15105735 | None:intergenic | 40.0% |
| !! | CTCCTGGGATGATACTTTTT+GGG | + | chr4.3:15105715-15105734 | None:intergenic | 40.0% |
| !!! | ACTTTTTGGGTGGTTTTCTC+CGG | + | chr4.3:15105702-15105721 | None:intergenic | 40.0% |
| !!! | GGGTGAAGCTTTGTTTGTTT+TGG | - | chr4.3:15106304-15106323 | MS.gene049886:CDS | 40.0% |
| AACAAAGCTTCACCCAGATC+TGG | + | chr4.3:15106299-15106318 | None:intergenic | 45.0% | |
| ATGGTTTGATGTGCCAGATC+TGG | - | chr4.3:15106283-15106302 | MS.gene049886:CDS | 45.0% | |
| GTGTATGAGAGGAAGGAGAA+GGG | + | chr4.3:15105488-15105507 | None:intergenic | 45.0% | |
| TGGTTTGATGTGCCAGATCT+GGG | - | chr4.3:15106284-15106303 | MS.gene049886:CDS | 45.0% | |
| TTTCAGTATGCACCGCTTAG+TGG | - | chr4.3:15105837-15105856 | MS.gene049886:CDS | 45.0% | |
| ! | AGGCCTTGCCTTTAGAAAAG+AGG | + | chr4.3:15106394-15106413 | None:intergenic | 45.0% |
| ! | GAAGTTGACAAGTGGTGATG+TGG | + | chr4.3:15105573-15105592 | None:intergenic | 45.0% |
| !! | CACCCAAAAAGTATCATCCC+AGG | - | chr4.3:15105710-15105729 | MS.gene049886:CDS | 45.0% |
| !! | CTGGGATGATACTTTTTGGG+TGG | + | chr4.3:15105712-15105731 | None:intergenic | 45.0% |
| !! | GATGTGGTGCTGGTTCAATA+CGG | + | chr4.3:15105557-15105576 | None:intergenic | 45.0% |
| !!! | CTTTTTGGGTGGTTTTCTCC+GGG | + | chr4.3:15105701-15105720 | None:intergenic | 45.0% |
| !!! | TTTTTGGGTGGTTTTCTCCG+GGG | + | chr4.3:15105700-15105719 | None:intergenic | 45.0% |
| ATGCGAGGTGTATGAGAGGA+AGG | + | chr4.3:15105495-15105514 | None:intergenic | 50.0% | |
| GGGTTGAACAAAGTTGGGCA+AGG | + | chr4.3:15106467-15106486 | None:intergenic | 50.0% | |
| GGTGTATGAGAGGAAGGAGA+AGG | + | chr4.3:15105489-15105508 | None:intergenic | 50.0% | |
| TCCCAAGACATATCCATCCC+CGG | - | chr4.3:15105680-15105699 | MS.gene049886:CDS | 50.0% | |
| TCCGGGGATGGATATGTCTT+GGG | + | chr4.3:15105684-15105703 | None:intergenic | 50.0% | |
| TGGAATGCGAGGTGTATGAG+AGG | + | chr4.3:15105499-15105518 | None:intergenic | 50.0% | |
| ! | GTAAGCCTGCCAACAGCTTT+TGG | - | chr4.3:15106441-15106460 | MS.gene049886:CDS | 50.0% |
| CAAGGCCAAAAGCTGTTGGC+AGG | + | chr4.3:15106449-15106468 | None:intergenic | 55.0% | |
| CTCCGGGGATGGATATGTCT+TGG | + | chr4.3:15105685-15105704 | None:intergenic | 55.0% | |
| TGGGCAAGGCCAAAAGCTGT+TGG | + | chr4.3:15106453-15106472 | None:intergenic | 55.0% | |
| ! | GACAAGTGGTGATGTGGTGC+TGG | + | chr4.3:15105567-15105586 | None:intergenic | 55.0% |
| ! | TGGGTGGTTTTCTCCGGGGA+TGG | + | chr4.3:15105696-15105715 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 15105369 | 15106499 | 15105369 | ID=MS.gene049886 |
| chr4.3 | mRNA | 15105369 | 15106499 | 15105369 | ID=MS.gene049886.t1;Parent=MS.gene049886 |
| chr4.3 | exon | 15105369 | 15106499 | 15105369 | ID=MS.gene049886.t1.exon1;Parent=MS.gene049886.t1 |
| chr4.3 | CDS | 15105369 | 15106499 | 15105369 | ID=cds.MS.gene049886.t1;Parent=MS.gene049886.t1 |
| Gene Sequence |
| Protein sequence |
