AlfalfaGEDB | MS.gene28904

M. sativa cultivar XinJiangDaYe / MS.gene28904

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF03478.21

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28904.t1	XP_003629211.1	95	378	19	0	1	378	20	397	1.20E-220	775.4

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28904.t1	Q3EBZ2	30.4	405	235	13	4	376	1	390	6.9e-39	162.9

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28904.t1	G7LA96	95.0	378	19	0	1	378	20	397	8.7e-221	775.4

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049567	MS.gene28904	0.803242	3.83E-49	-1.69E-46
MS.gene049958	MS.gene28904	0.802353	5.84E-49	-1.69E-46
MS.gene050780	MS.gene28904	0.811722	6.07E-51	-1.69E-46
MS.gene051207	MS.gene28904	0.801059	1.08E-48	-1.69E-46
MS.gene051492	MS.gene28904	0.80712	5.90E-50	-1.69E-46
MS.gene052208	MS.gene28904	0.807402	5.14E-50	-1.69E-46
MS.gene052333	MS.gene28904	0.810148	1.33E-50	-1.69E-46
MS.gene053094	MS.gene28904	0.80345	3.47E-49	-1.69E-46
MS.gene053643	MS.gene28904	0.801065	1.07E-48	-1.69E-46
MS.gene053647	MS.gene28904	0.81904	1.43E-52	-1.69E-46

Showing 1 to 10 of 18 entries

Previous1 2Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
MS.gene012159	MS.gene28904	PPI
MS.gene037197	MS.gene28904	PPI
MS.gene049886	MS.gene28904	PPI
MS.gene23495	MS.gene28904	PPI
MS.gene23497	MS.gene28904	PPI
MS.gene28903	MS.gene28904	PPI
MS.gene28904	MS.gene017581	PPI
MS.gene28904	MS.gene023531	PPI
MS.gene28904	MS.gene018718	PPI
MS.gene28904	MS.gene012160	PPI

Showing 1 to 10 of 22 entries

Previous1 2 3Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28904.t1	MTR_8g074610	94.974	378	19	0	1	378	20	397	0.0	750
MS.gene28904.t1	MTR_2g041510	76.316	380	80	4	1	378	21	392	0.0	585
MS.gene28904.t1	MTR_2g041510	76.316	380	80	4	1	378	1	372	0.0	584
MS.gene28904.t1	MTR_8g074640	74.142	379	95	3	1	378	1	377	0.0	580
MS.gene28904.t1	MTR_8g085760	33.162	389	212	12	2	364	9	375	1.41e-51	177
MS.gene28904.t1	MTR_6g092570	34.133	375	200	10	2	364	4	343	6.61e-51	174
MS.gene28904.t1	MTR_5g079830	34.746	354	182	10	1	340	1	319	2.23e-50	174
MS.gene28904.t1	MTR_7g096720	34.973	366	189	14	1	340	6	348	8.96e-48	166
MS.gene28904.t1	MTR_4g088925	34.853	373	187	12	14	364	34	372	1.51e-47	166
MS.gene28904.t1	MTR_3g030050	30.969	423	226	14	4	376	14	420	3.13e-44	158

Showing 1 to 10 of 50 entries

Previous1 2 3 4 5Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28904.t1	AT2G17030	30.370	405	235	13	4	376	1	390	1.90e-43	155
MS.gene28904.t1	AT2G17036	28.431	408	233	15	4	376	1	384	1.82e-37	139
MS.gene28904.t1	AT2G17036	28.079	406	235	14	5	376	1	383	3.14e-37	139
MS.gene28904.t1	AT1G65770	28.954	373	203	12	4	353	1	334	4.59e-35	132
MS.gene28904.t1	AT4G35733	28.608	388	216	15	1	365	1	350	4.57e-33	127
MS.gene28904.t1	AT1G44080	27.717	368	213	12	5	362	4	328	8.26e-30	117
MS.gene28904.t1	AT2G26160	29.745	353	195	14	6	342	5	320	5.44e-29	115
MS.gene28904.t1	AT3G25750	26.146	371	227	11	3	357	2	341	1.74e-26	108
MS.gene28904.t1	AT3G25750	27.838	370	208	13	3	357	2	327	2.86e-25	105
MS.gene28904.t1	AT2G17690	28.436	422	217	15	6	360	3	406	1.86e-24	104

Showing 1 to 10 of 15 entries

Previous1 2Next

Find 72 sgRNAs with CRISPR-Local

Find 77 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGACTTAATTGGATATCA+AGG	0.406036	8.2:+30154165	MS.gene28904:CDS
AAAGTAGTGAAGACATGGGA+AGG	0.596556	8.2:+30153989	MS.gene28904:CDS
AAATTAGGAATCATGAAACA+TGG	0.647692	8.2:+30153745	MS.gene28904:CDS
AAGACTTAATTGGATATCAA+GGG	0.598333	8.2:+30154166	MS.gene28904:CDS
AAGCATTTGATGGAGTCATG+TGG	0.661502	8.2:+30153937	MS.gene28904:CDS
AAGGGAACTGCATCTACTTT+AGG	0.247416	8.2:+30154184	MS.gene28904:CDS
AAGTGTTGTTACTGCTAAGA+GGG	0.570047	8.2:-30153552	None:intergenic
AATGGAAAAGAAGGAGAATT+TGG	0.229744	8.2:-30153322	None:intergenic
ACAACACTTCTACCATGCTA+TGG	0.549319	8.2:+30153566	MS.gene28904:CDS
ACACTAGTCCAAGGAGAGTT+AGG	0.390020	8.2:-30153685	None:intergenic

Showing 1 to 10 of 72 entries

Previous1 2 3 4 5…8Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AATGGAAAAGAAGGAGAATT+TGG	-	chr8.2:30153325-30153344	None:intergenic	30.0%
ATAAATGGGGAACTATTTCA+TGG	+	chr8.2:30153851-30153870	MS.gene28904:CDS	30.0%
ATCTTTCAAGAGGGTAAATT+AGG	+	chr8.2:30153730-30153749	MS.gene28904:CDS	30.0%
CAATGATATAAACGGTTGAT+TGG	-	chr8.2:30153393-30153412	None:intergenic	30.0%
GTCTCAACTAAAGACTTAAT+TGG	+	chr8.2:30154156-30154175	MS.gene28904:CDS	30.0%
TATGAAAGTAGTGAAGACAT+GGG	+	chr8.2:30153985-30154004	MS.gene28904:CDS	30.0%
ATAGGACTCAACAAACTTAC+AGG	-	chr8.2:30153511-30153530	None:intergenic	35.0%
CTATGAAAGTAGTGAAGACA+TGG	+	chr8.2:30153984-30154003	MS.gene28904:CDS	35.0%
GACGATGTTATTGTGTTCAA+GGG	+	chr8.2:30153811-30153830	MS.gene28904:CDS	35.0%
GGATGATCATAGAATCACTA+TGG	+	chr8.2:30154236-30154255	MS.gene28904:CDS	35.0%

Showing 1 to 10 of 77 entries

Previous1 2 3 4 5…8Next

Chromosome	Type	Strat	End	Strand	Name
chr8.2	gene	30153184	30154320	30153184	ID=MS.gene28904
chr8.2	mRNA	30153184	30154320	30153184	ID=MS.gene28904.t1;Parent=MS.gene28904
chr8.2	exon	30153184	30154320	30153184	ID=MS.gene28904.t1.exon1;Parent=MS.gene28904.t1
chr8.2	CDS	30153184	30154320	30153184	ID=cds.MS.gene28904.t1;Parent=MS.gene28904.t1

Gene Sequence

>MS.gene28904

ATGGATGAGATAGTTGATTGGTCTCAACTTCCTATAGAGCTATGGCCTAAGATAGGAAAATATCTTGATAAACACATAGATGTTCTCAGATTTCGCAGTGTCTGCGAATCATTTCGTTCTTCCATTCCTCCATCTCATCCAAATTCTCCTTCTTTTCCATTACAAATACCTCACCCCGTCTATGACTCGCTAAACAACTACATCAACCAATCAACCGTTTATATCATTGAACCAACTGATGCAAGTTCCAACTCCAATTTAGAACCTTTAGCACCTTCTTCTTCCAAAGGTTGGCTGATTAAGGTAGAAGAAACAAAGAATCAACCTGTAAGTTTGTTGAGTCCTATCTCTGACCGAAAATTATCATACCCTCTTAGCAGTAACAACACTTCTACCATGCTATGGAACTTGATGGATCATAGGGTCGTTGAGCTATGCAAATCATATAAAATTGAAAAAACTACACGTTTCTCTAGTTCTGCTATCAAAGTCGTGTTCTATCCTAACTCTCCTTGGACTAGTGTTGAGGAATGTGTAGCTTGTTGTATCTTTCAAGAGGGTAAATTAGGAATCATGAAACATGGTGATGAAAAATGGACACTTGTGGATGACAAGAATTTCTACTATGACGATGTTATTGTGTTCAAGGGTCAGTTTTATGTTACTGATAAATGGGGAACTATTTCATGGATTGATGTTTCTTCTTTGAGATTGATACAATTCTCACCTCCTTTGTGTGGATTTGGAAACAAGAAGCATTTGATGGAGTCATGTGGAAGTCTTTACGTCGTTGACAGATACTATGAAAGTAGTGAAGACATGGGAAGGAACTATGTTAGAAGACGCTACGATCGAGACACTGATGTGGAATGTTTCAAAGTTTATAAGTTGGATGAAGAATGGGGAAAATGGGTTGATGTGAAAAGCTTGAGAGATAGAGCTTTCATTTTGAGCGACAGTTGTAACTTCTCTGTCTCAACTAAAGACTTAATTGGATATCAAGGGAACTGCATCTACTTTAGGGATACTTATGATGTTCGTATGTATAATTTGGATGATCATAGAATCACTATGGTTAATTTTAATCCTTGCATTGACAAGACTTTGTGGTCTCGTTCACCTTGGATGAGATGTTAG

Protein sequence

>MS.gene28904.t1

MDEIVDWSQLPIELWPKIGKYLDKHIDVLRFRSVCESFRSSIPPSHPNSPSFPLQIPHPVYDSLNNYINQSTVYIIEPTDASSNSNLEPLAPSSSKGWLIKVEETKNQPVSLLSPISDRKLSYPLSSNNTSTMLWNLMDHRVVELCKSYKIEKTTRFSSSAIKVVFYPNSPWTSVEECVACCIFQEGKLGIMKHGDEKWTLVDDKNFYYDDVIVFKGQFYVTDKWGTISWIDVSSLRLIQFSPPLCGFGNKKHLMESCGSLYVVDRYYESSEDMGRNYVRRRYDRDTDVECFKVYKLDEEWGKWVDVKSLRDRAFILSDSCNFSVSTKDLIGYQGNCIYFRDTYDVRMYNLDDHRITMVNFNPCIDKTLWSRSPWMRC