AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene064059


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene064059.t1 MTR_6g092570 87.784 352 43 0 140 491 1 352 0.0 634
MS.gene064059.t1 MTR_4g125090 67.568 333 85 4 102 434 1 310 8.02e-152 436
MS.gene064059.t1 MTR_5g079830 63.142 331 116 3 144 469 3 332 3.91e-138 404
MS.gene064059.t1 MTR_8g085760 40.052 387 181 16 139 486 5 379 1.99e-71 232
MS.gene064059.t1 MTR_7g096720 42.204 372 172 15 150 487 16 378 5.06e-68 223
MS.gene064059.t1 MTR_4g088925 42.857 350 172 11 158 487 36 377 1.57e-65 216
MS.gene064059.t1 MTR_8g074610 34.565 379 193 13 143 482 21 383 8.91e-45 162
MS.gene064059.t1 MTR_2g041510 33.811 349 180 10 143 456 2 334 1.02e-44 161
MS.gene064059.t1 MTR_2g041510 33.621 348 182 9 143 456 22 354 1.54e-44 161
MS.gene064059.t1 MTR_8g074640 34.286 350 182 12 143 456 2 339 2.41e-43 157
MS.gene064059.t1 MTR_2g047180 25.858 379 223 16 145 483 2 362 8.84e-17 82.4
MS.gene064059.t1 MTR_1g026850 23.978 367 245 8 143 483 2 360 2.10e-16 81.3
MS.gene064059.t1 MTR_6g018400 23.483 379 236 15 144 483 2 365 2.12e-16 81.3
MS.gene064059.t1 MTR_1g016570 26.543 324 192 11 147 456 21 312 5.35e-16 80.1
MS.gene064059.t1 MTR_3g029840 25.449 334 208 13 145 456 3 317 5.85e-16 79.7
MS.gene064059.t1 MTR_3g030050 24.479 384 214 12 147 470 16 383 3.64e-15 77.8
MS.gene064059.t1 MTR_3g029650 26.176 340 199 13 147 460 5 318 1.48e-14 77.0
MS.gene064059.t1 MTR_3g030560 25.749 334 191 15 147 445 4 315 7.75e-14 73.6
MS.gene064059.t1 MTR_6g018390 24.866 374 232 12 145 483 3 362 1.27e-13 72.8
MS.gene064059.t1 MTR_3g030380 27.976 336 190 14 146 456 4 312 2.48e-12 68.6
MS.gene064059.t1 MTR_3g030080 25.672 335 207 12 147 456 7 324 5.39e-12 67.8
MS.gene064059.t1 MTR_3g029620 26.062 353 189 16 147 456 3 326 9.17e-12 67.0
MS.gene064059.t1 MTR_3g029950 25.272 368 222 13 145 477 3 352 4.35e-11 65.1
MS.gene064059.t1 MTR_6g018360 23.834 386 236 16 145 483 3 377 4.75e-11 65.1
MS.gene064059.t1 MTR_3g030440 25.215 349 219 13 147 476 6 331 5.21e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene064059.t1 AT2G17030 30.294 340 194 14 146 449 2 334 6.41e-24 103
MS.gene064059.t1 AT2G26160 25.672 335 203 11 147 456 5 318 1.96e-23 101
MS.gene064059.t1 AT1G65770 24.377 361 230 14 147 481 3 346 2.89e-22 98.6
MS.gene064059.t1 AT3G25750 26.543 324 201 10 147 456 5 305 3.61e-22 98.2
MS.gene064059.t1 AT4G35733 26.113 337 213 10 141 456 1 322 8.44e-22 97.1
MS.gene064059.t1 AT1G65740 27.195 353 194 15 146 456 2 333 1.64e-21 96.7
MS.gene064059.t1 AT3G25750 26.331 338 198 12 147 456 5 319 5.82e-21 94.7
MS.gene064059.t1 AT5G60060 28.313 332 195 18 148 448 11 330 6.18e-17 82.8
MS.gene064059.t1 AT1G44080 28.221 326 196 14 146 456 4 306 1.34e-16 81.6
MS.gene064059.t1 AT1G65760 27.195 353 180 16 147 456 5 323 2.34e-15 78.2
MS.gene064059.t1 AT2G17036 26.316 342 192 14 146 445 1 324 7.37e-15 77.0
MS.gene064059.t1 AT2G17036 26.316 342 192 14 146 445 2 325 7.68e-15 76.6

Find 84 sgRNAs with CRISPR-Local

Find 195 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCGAATGTATTCAAATTCT+TGG 0.182971 6.1:+79587063 None:intergenic
TTGTCTGCTAACGATTATTA+TGG 0.210484 6.1:-79586224 MS.gene064059:CDS
ATGGCTTCGTGTAACAAATT+TGG 0.214302 6.1:-79586288 MS.gene064059:CDS
TAATGATATAATCCTTTATA+TGG 0.215820 6.1:-79586540 MS.gene064059:CDS
ATAATTTATATTTACATATA+AGG 0.221617 6.1:+79587219 None:intergenic
TGCATCTACTTCTGTCTTAT+AGG 0.241603 6.1:-79586188 MS.gene064059:CDS
CGTTACAGCTTGAATAATTT+CGG 0.244558 6.1:-79586155 MS.gene064059:CDS
AAATTGCGAGTTTCCAATAT+TGG 0.249194 6.1:-79586605 MS.gene064059:CDS
TAAATCTTCCTCAAGAATTA+TGG 0.250424 6.1:-79587099 MS.gene064059:CDS
CCAGCTTGTTCTTCTAATAA+AGG 0.251998 6.1:-79586896 MS.gene064059:CDS
CTACTTTATAAACATCATTA+AGG 0.255244 6.1:+79586684 None:intergenic
TGGTTGTAGGCGAAATATTT+TGG 0.256246 6.1:+79586925 None:intergenic
CAAATTGTTATATCCAATAT+TGG 0.264586 6.1:+79586592 None:intergenic
GGGTGATGTTATGTTTGTTT+TGG 0.269131 6.1:-79586267 MS.gene064059:CDS
TTGTGGAGGTTACTGAAATA+AGG 0.318477 6.1:-79588375 MS.gene064059:intron
TGAACACTGAACCAACTTAA+AGG 0.326040 6.1:+79586463 None:intergenic
GATTTCCATGAGTAATTTGC+AGG 0.330388 6.1:+79586343 None:intergenic
GCAACAATTGTCAAGCATTC+AGG 0.334826 6.1:-79588961 MS.gene064059:intron
GAAGAACAAGCTGGCGATAA+TGG 0.339822 6.1:+79586905 None:intergenic
ATATAACAATTTGATTATAG+TGG 0.341519 6.1:-79586582 MS.gene064059:CDS
TTTCATGAACTTACGAGTTA+AGG 0.344479 6.1:-79586771 MS.gene064059:CDS
TGGCTTCGTGTAACAAATTT+GGG 0.345435 6.1:-79586287 MS.gene064059:CDS
CATAAACCTTCCCCATATAA+AGG 0.368215 6.1:+79586528 None:intergenic
GTCTTTGCTCTTCATAAAGA+TGG 0.375855 6.1:-79586629 MS.gene064059:CDS
CTTGCTACGATCATTACTTA+AGG 0.377181 6.1:+79586436 None:intergenic
TTGAAATCGTATGATCTTCA+TGG 0.381754 6.1:-79587277 MS.gene064059:CDS
TACTTTATAAACATCATTAA+GGG 0.399374 6.1:+79586685 None:intergenic
CAGCTTGTTCTTCTAATAAA+GGG 0.401402 6.1:-79586895 MS.gene064059:CDS
CAGACACTTCACATTCTAGA+TGG 0.415961 6.1:-79586971 MS.gene064059:CDS
GATATGGACTTCTGACTTGT+TGG 0.422344 6.1:+79587581 None:intergenic
TGAATACATTCGATGTTCTT+CGG 0.431165 6.1:-79587054 MS.gene064059:CDS
ACAATAAAGCACAGACACTA+TGG 0.438400 6.1:+79587029 None:intergenic
TGCTAACGATTATTATGGAT+TGG 0.442714 6.1:-79586219 MS.gene064059:CDS
AATTTGATTATAGTGGATGA+TGG 0.446265 6.1:-79586575 MS.gene064059:CDS
AATGATATAATCCTTTATAT+GGG 0.446464 6.1:-79586539 MS.gene064059:CDS
TAATAAAGGGTGGATCATAA+AGG 0.457385 6.1:-79586882 MS.gene064059:CDS
CAATTGTTCATCCTTTAAGT+TGG 0.460756 6.1:-79586474 MS.gene064059:CDS
AGAACGGGCAAAGTGGCAGC+AGG 0.461126 6.1:-79587184 MS.gene064059:CDS
TGTTGAGGGTCTCGGTCAGA+TGG 0.482503 6.1:-79586651 MS.gene064059:CDS
TTGATGGAGAATCAAGTAGA+TGG 0.487497 6.1:-79586307 MS.gene064059:CDS
TCTACTTCTGTCTTATAGGC+AGG 0.495082 6.1:-79586184 MS.gene064059:CDS
TGAGAAGGAGAAGGAAAAGG+AGG 0.495688 6.1:+79586992 None:intergenic
TATGGGGAAGGTTTATGTTG+TGG 0.499382 6.1:-79586522 MS.gene064059:CDS
AAGCTGGCGATAATGGTTGT+AGG 0.502575 6.1:+79586912 None:intergenic
TGATCGTAGCAAGAAGCGTT+TGG 0.502585 6.1:-79586426 MS.gene064059:CDS
GTCTGAGAAGGAGAAGGAAA+AGG 0.505628 6.1:+79586989 None:intergenic
GAGAAGGAGAAGGAAAAGGA+GGG 0.509068 6.1:+79586993 None:intergenic
CATATCATAGTGTACAGAAA+AGG 0.517702 6.1:-79587564 MS.gene064059:intron
TCTGATACACACTGTCAGAA+TGG 0.517750 6.1:+79586087 None:intergenic
GAAGGAGAAGGAAAAGGAGG+GGG 0.519305 6.1:+79586995 None:intergenic
ATTTGATTATAGTGGATGAT+GGG 0.520860 6.1:-79586574 MS.gene064059:CDS
TCTGTAGGCAAAGCAAATGA+TGG 0.530676 6.1:-79589071 MS.gene064059:intron
TATAATCCTTTATATGGGGA+AGG 0.532104 6.1:-79586534 MS.gene064059:CDS
TATGTATTGTAGAATGAAAG+AGG 0.534178 6.1:-79588418 MS.gene064059:intron
CTGTCAGAATGGAACAAAGT+TGG 0.537794 6.1:+79586098 None:intergenic
GTTTATGTTGTGGATAAGAG+TGG 0.537807 6.1:-79586512 MS.gene064059:CDS
TGAAGTGTCTGAGAAGGAGA+AGG 0.542283 6.1:+79586983 None:intergenic
AGAAGGAGAAGGAAAAGGAG+GGG 0.548922 6.1:+79586994 None:intergenic
GCTACGATCATTACTTAAGG+AGG 0.554126 6.1:+79586439 None:intergenic
TAGTCAGTTGAATTGCCTAC+TGG 0.563965 6.1:+79589020 None:intergenic
ACTTTATAAACATCATTAAG+GGG 0.567833 6.1:+79586686 None:intergenic
AGGCAATTCAACTGACTATG+TGG 0.569502 6.1:-79589015 MS.gene064059:CDS
CTTGTTCTTCTAATAAAGGG+TGG 0.574795 6.1:-79586892 MS.gene064059:CDS
GAATGCCTGCAAATTACTCA+TGG 0.579397 6.1:-79586348 MS.gene064059:CDS
AGAATGTGAAGTGTCTGAGA+AGG 0.579474 6.1:+79586977 None:intergenic
ATAACTAACCATAATTCTTG+AGG 0.584839 6.1:+79587091 None:intergenic
ATTGTTGCAGATGCTCTGCA+AGG 0.587191 6.1:+79588976 None:intergenic
CTACGATCATTACTTAAGGA+GGG 0.587399 6.1:+79586440 None:intergenic
GTGGCAGCAGGGACAGATGA+CGG 0.588587 6.1:-79587172 MS.gene064059:CDS
TCGTAGCAAGAAGCGTTTGG+TGG 0.589504 6.1:-79586423 MS.gene064059:CDS
AAGCGTTTGGTGGAGTCGCG+TGG 0.598639 6.1:-79586413 MS.gene064059:CDS
AAAGAAAAGAACGGGCAAAG+TGG 0.600992 6.1:-79587191 MS.gene064059:CDS
TGTGTTTAAACTGCTTATTG+TGG 0.606966 6.1:-79588392 MS.gene064059:CDS
GTTTAAACTGCTTATTGTGG+AGG 0.617461 6.1:-79588389 MS.gene064059:CDS
TGGATGATAACACGATTGAC+TGG 0.618348 6.1:-79587123 MS.gene064059:CDS
GAACGGGCAAAGTGGCAGCA+GGG 0.622907 6.1:-79587183 MS.gene064059:CDS
ATGATATAATCCTTTATATG+GGG 0.625054 6.1:-79586538 MS.gene064059:CDS
GGCAAAGCAAATGATGGAGA+GGG 0.625134 6.1:-79589065 MS.gene064059:CDS
CCTTTATTAGAAGAACAAGC+TGG 0.641448 6.1:+79586896 None:intergenic
AGGCAAAGCAAATGATGGAG+AGG 0.647610 6.1:-79589066 MS.gene064059:CDS
TTGTTGCAGATGCTCTGCAA+GGG 0.649515 6.1:+79588977 None:intergenic
ATATTCCGCAGTGCACCAGT+AGG 0.655583 6.1:-79589035 MS.gene064059:CDS
GAATGGAACAAAGTTGGACA+AGG 0.656486 6.1:+79586104 None:intergenic
AATTGCCTACTGGTGCACTG+CGG 0.784368 6.1:+79589030 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTCAATTATTTTCATTT+TGG - chr6.1:79587986-79588005 MS.gene064059:intron 10.0%
!! AATGATATAATCCTTTATAT+GGG - chr6.1:79588756-79588775 MS.gene064059:intron 15.0%
!! AATTAATGTCAAAATCATTA+AGG + chr6.1:79586522-79586541 None:intergenic 15.0%
!! ATATAACAATTTGATTATAG+TGG - chr6.1:79588713-79588732 MS.gene064059:intron 15.0%
!! TAAATGCTTATCTTAAAATT+TGG + chr6.1:79587064-79587083 None:intergenic 15.0%
!! TAATGATATAATCCTTTATA+TGG - chr6.1:79588755-79588774 MS.gene064059:intron 15.0%
!! TACTTTATAAACATCATTAA+GGG + chr6.1:79588613-79588632 None:intergenic 15.0%
!! TTATTCAAAAAAGAAAAGAA+CGG - chr6.1:79588095-79588114 MS.gene064059:intron 15.0%
!!! CTGTTTTTCAATAAAAATTT+GGG - chr6.1:79587875-79587894 MS.gene064059:intron 15.0%
!!! TAATGATTTTGACATTAATT+AGG - chr6.1:79586522-79586541 MS.gene064059:CDS 15.0%
!!! TAATTGTTATTATTACTACT+AGG - chr6.1:79586790-79586809 MS.gene064059:CDS 15.0%
!!! TTGTTTTTGATAAAGTTTTT+AGG - chr6.1:79586452-79586471 MS.gene064059:CDS 15.0%
!! ACTTTATAAACATCATTAAG+GGG + chr6.1:79588612-79588631 None:intergenic 20.0%
!! ATGATATAATCCTTTATATG+GGG - chr6.1:79588757-79588776 MS.gene064059:intron 20.0%
!! CAAATTGTTATATCCAATAT+TGG + chr6.1:79588706-79588725 None:intergenic 20.0%
!! CTACTTTATAAACATCATTA+AGG + chr6.1:79588614-79588633 None:intergenic 20.0%
!! GAAATCAATTTACTATAACA+AGG + chr6.1:79586163-79586182 None:intergenic 20.0%
!! TATACAAAAATGTTACTGAA+TGG + chr6.1:79586106-79586125 None:intergenic 20.0%
!! TATTCAAAAAAGAAAAGAAC+GGG - chr6.1:79588096-79588115 MS.gene064059:intron 20.0%
!!! AATTTTTATTGAAAAACAGG+AGG + chr6.1:79587874-79587893 None:intergenic 20.0%
!!! ATTTTTATTGAAAAACAGGA+GGG + chr6.1:79587873-79587892 None:intergenic 20.0%
!!! CCAAATTTTTATTGAAAAAC+AGG + chr6.1:79587877-79587896 None:intergenic 20.0%
!!! CCTGTTTTTCAATAAAAATT+TGG - chr6.1:79587874-79587893 MS.gene064059:intron 20.0%
! AAAATCAGTTTGTAAAGTCA+TGG + chr6.1:79587019-79587038 None:intergenic 25.0%
! AGATAAGTAAAATGCTGATA+GGG - chr6.1:79587153-79587172 MS.gene064059:CDS 25.0%
! ATAACTAACCATAATTCTTG+AGG + chr6.1:79588207-79588226 None:intergenic 25.0%
! ATCGAATGTATTCAAATTCT+TGG + chr6.1:79588235-79588254 None:intergenic 25.0%
! CCACATATAAATAACACTAA+GGG + chr6.1:79587114-79587133 None:intergenic 25.0%
! GCTTATCTTAAAATTTGGAT+TGG + chr6.1:79587059-79587078 None:intergenic 25.0%
! TAAATCTTCCTCAAGAATTA+TGG - chr6.1:79588196-79588215 MS.gene064059:intron 25.0%
! TAGATAAGTAAAATGCTGAT+AGG - chr6.1:79587152-79587171 MS.gene064059:CDS 25.0%
! TATGTATTGTAGAATGAAAG+AGG - chr6.1:79586877-79586896 MS.gene064059:CDS 25.0%
! TCTCATATGATGTTAGATTT+AGG + chr6.1:79587198-79587217 None:intergenic 25.0%
! TGAAGTTTATAACTATCTGT+AGG - chr6.1:79586209-79586228 MS.gene064059:CDS 25.0%
! TTGCTTTATACATATCTCAT+AGG + chr6.1:79587449-79587468 None:intergenic 25.0%
! TTTGACATTAATTAGGTGAT+TGG - chr6.1:79586529-79586548 MS.gene064059:CDS 25.0%
!! ATAAGAGTGGAATTATTTTC+TGG - chr6.1:79588796-79588815 MS.gene064059:intron 25.0%
!! TTTTTATTGAAAAACAGGAG+GGG + chr6.1:79587872-79587891 None:intergenic 25.0%
!!! AATTATTTTCATTTTGGTGC+AGG - chr6.1:79587992-79588011 MS.gene064059:intron 25.0%
!!! AATTTGATTATAGTGGATGA+TGG - chr6.1:79588720-79588739 MS.gene064059:intron 25.0%
!!! ACTTTACAAACTGATTTTGT+AGG - chr6.1:79587021-79587040 MS.gene064059:CDS 25.0%
!!! ATTTGATTATAGTGGATGAT+GGG - chr6.1:79588721-79588740 MS.gene064059:intron 25.0%
!!! CTTTACAAACTGATTTTGTA+GGG - chr6.1:79587022-79587041 MS.gene064059:CDS 25.0%
!!! TTGTTGCATTTTTTATTTGC+AGG - chr6.1:79587662-79587681 MS.gene064059:intron 25.0%
AAATATGCAAAATCCTGTCA+AGG - chr6.1:79586387-79586406 MS.gene064059:CDS 30.0%
AAATTGCGAGTTTCCAATAT+TGG - chr6.1:79588690-79588709 MS.gene064059:intron 30.0%
AAGGTTGAAAAATCGAAATC+TGG - chr6.1:79588432-79588451 MS.gene064059:intron 30.0%
AGACAAAGAATCTTTCTGAT+AGG - chr6.1:79587771-79587790 MS.gene064059:intron 30.0%
ATTATTACTACTAGGCGTTT+AGG - chr6.1:79586798-79586817 MS.gene064059:CDS 30.0%
CAATTGTTCATCCTTTAAGT+TGG - chr6.1:79588821-79588840 MS.gene064059:intron 30.0%
CATATCATAGTGTACAGAAA+AGG - chr6.1:79587731-79587750 MS.gene064059:intron 30.0%
CGTTACAGCTTGAATAATTT+CGG - chr6.1:79589140-79589159 MS.gene064059:intron 30.0%
GAGTATATAACCGTTACTAA+TGG + chr6.1:79587607-79587626 None:intergenic 30.0%
GCCACATATAAATAACACTA+AGG + chr6.1:79587115-79587134 None:intergenic 30.0%
TAATAAAGGGTGGATCATAA+AGG - chr6.1:79588413-79588432 MS.gene064059:intron 30.0%
TATAATCCTTTATATGGGGA+AGG - chr6.1:79588761-79588780 MS.gene064059:intron 30.0%
TCTGTTTGCAACTTAAAAGA+AGG + chr6.1:79586736-79586755 None:intergenic 30.0%
TCTTTCTGATAGGAAATCTT+TGG - chr6.1:79587781-79587800 MS.gene064059:intron 30.0%
TGAATACATTCGATGTTCTT+CGG - chr6.1:79588241-79588260 MS.gene064059:intron 30.0%
TGCTAACGATTATTATGGAT+TGG - chr6.1:79589076-79589095 MS.gene064059:intron 30.0%
TGTGTTTAAACTGCTTATTG+TGG - chr6.1:79586903-79586922 MS.gene064059:CDS 30.0%
TGTTATGCAAAAATATCTCG+TGG - chr6.1:79588050-79588069 MS.gene064059:intron 30.0%
TTGAAATCGTATGATCTTCA+TGG - chr6.1:79588018-79588037 MS.gene064059:intron 30.0%
TTGTCTGCTAACGATTATTA+TGG - chr6.1:79589071-79589090 MS.gene064059:intron 30.0%
TTTCATGAACTTACGAGTTA+AGG - chr6.1:79588524-79588543 MS.gene064059:intron 30.0%
! AGATTGATTGATTCAGATCT+TGG - chr6.1:79587630-79587649 MS.gene064059:intron 30.0%
! CAGCTTGTTCTTCTAATAAA+GGG - chr6.1:79588400-79588419 MS.gene064059:CDS 30.0%
! CTTTTCTGTACACTATGATA+TGG + chr6.1:79587733-79587752 None:intergenic 30.0%
! TTCTTGCTATAGCATTTAAG+TGG - chr6.1:79587218-79587237 MS.gene064059:CDS 30.0%
! TTTTGCTCTAATCACAATAG+CGG - chr6.1:79587558-79587577 MS.gene064059:intron 30.0%
!! ATCAGTGTTTTAAACGTTGA+TGG - chr6.1:79588972-79588991 MS.gene064059:CDS 30.0%
!! CCCTTAGTGTTATTTATATG+TGG - chr6.1:79587111-79587130 MS.gene064059:CDS 30.0%
!! GGTGATGTTATGTTTGTTTT+GGG - chr6.1:79589029-79589048 MS.gene064059:CDS 30.0%
!! TGGAACCTTTACTTTTGTTT+TGG - chr6.1:79586594-79586613 MS.gene064059:CDS 30.0%
!!! AGTACGTTGATGACATTTTT+TGG - chr6.1:79589168-79589187 MS.gene064059:intron 30.0%
!!! GAACCTTTACTTTTGTTTTG+GGG - chr6.1:79586596-79586615 MS.gene064059:CDS 30.0%
!!! GGAACCTTTACTTTTGTTTT+GGG - chr6.1:79586595-79586614 MS.gene064059:CDS 30.0%
!!! TAGGCGAAATATTTTGGTTT+CGG + chr6.1:79588367-79588386 None:intergenic 30.0%
AATTAAACCTTGTGCTATGC+AGG - chr6.1:79587467-79587486 MS.gene064059:intron 35.0%
ACAATAAAGCACAGACACTA+TGG + chr6.1:79588269-79588288 None:intergenic 35.0%
ACACCCCAAAACAAAAGTAA+AGG + chr6.1:79586602-79586621 None:intergenic 35.0%
ACAGAGTAGACCATTAGTAA+CGG - chr6.1:79587594-79587613 MS.gene064059:CDS 35.0%
ATGGCTTCGTGTAACAAATT+TGG - chr6.1:79589007-79589026 MS.gene064059:CDS 35.0%
ATTTACCCTTTGTTAGCAGA+TGG - chr6.1:79586760-79586779 MS.gene064059:CDS 35.0%
CAAGGTTGAATTGCTTCTAA+AGG - chr6.1:79586405-79586424 MS.gene064059:CDS 35.0%
CAGAAAGATTCTTTGTCTGA+AGG + chr6.1:79587769-79587788 None:intergenic 35.0%
CATAAACCTTCCCCATATAA+AGG + chr6.1:79588770-79588789 None:intergenic 35.0%
CCTTTATTAGAAGAACAAGC+TGG + chr6.1:79588402-79588421 None:intergenic 35.0%
CTACGATCATTACTTAAGGA+GGG + chr6.1:79588858-79588877 None:intergenic 35.0%
CTTGCTACGATCATTACTTA+AGG + chr6.1:79588862-79588881 None:intergenic 35.0%
CTTGTTCTTCTAATAAAGGG+TGG - chr6.1:79588403-79588422 MS.gene064059:CDS 35.0%
GCCATATTACTATATGTCGT+GGG + chr6.1:79586967-79586986 None:intergenic 35.0%
GCTCTTGACTACTTATCAAA+TGG - chr6.1:79587287-79587306 MS.gene064059:intron 35.0%
GTCTTTGCTCTTCATAAAGA+TGG - chr6.1:79588666-79588685 MS.gene064059:intron 35.0%
GTTTAAACTGCTTATTGTGG+AGG - chr6.1:79586906-79586925 MS.gene064059:CDS 35.0%
GTTTATGTTGTGGATAAGAG+TGG - chr6.1:79588783-79588802 MS.gene064059:intron 35.0%
TAAAATGCTGATAGGGACTT+TGG - chr6.1:79587160-79587179 MS.gene064059:CDS 35.0%
TATTTATCTGTAGAACCAGC+AGG + chr6.1:79587516-79587535 None:intergenic 35.0%
TCCCACGACATATAGTAATA+TGG - chr6.1:79586963-79586982 MS.gene064059:CDS 35.0%
TGAACACTGAACCAACTTAA+AGG + chr6.1:79588835-79588854 None:intergenic 35.0%
TGCAGAAAGTTACCTTGATT+TGG - chr6.1:79586571-79586590 MS.gene064059:CDS 35.0%
TGCATCTACTTCTGTCTTAT+AGG - chr6.1:79589107-79589126 MS.gene064059:intron 35.0%
TGGCTTCGTGTAACAAATTT+GGG - chr6.1:79589008-79589027 MS.gene064059:CDS 35.0%
TTCTGATAGGAAATCTTTGG+TGG - chr6.1:79587784-79587803 MS.gene064059:intron 35.0%
TTGATGGAGAATCAAGTAGA+TGG - chr6.1:79588988-79589007 MS.gene064059:CDS 35.0%
TTGTGGAGGTTACTGAAATA+AGG - chr6.1:79586920-79586939 MS.gene064059:CDS 35.0%
TTTATGCATGTGTTTCCTGA+GGG - chr6.1:79586661-79586680 MS.gene064059:CDS 35.0%
! CCAGCTTGTTCTTCTAATAA+AGG - chr6.1:79588399-79588418 MS.gene064059:CDS 35.0%
! CTTGACTCTTTGTTACTTGA+AGG + chr6.1:79587812-79587831 None:intergenic 35.0%
! GAAGAAAAAGTGTGTGATGA+TGG - chr6.1:79588152-79588171 MS.gene064059:intron 35.0%
! GATTTCCATGAGTAATTTGC+AGG + chr6.1:79588955-79588974 None:intergenic 35.0%
! GGGTGATGTTATGTTTGTTT+TGG - chr6.1:79589028-79589047 MS.gene064059:CDS 35.0%
! TGCTTTTATCAATTACCTGC+TGG - chr6.1:79587498-79587517 MS.gene064059:intron 35.0%
! TGGTTGTAGGCGAAATATTT+TGG + chr6.1:79588373-79588392 None:intergenic 35.0%
! TTTTATGCATGTGTTTCCTG+AGG - chr6.1:79586660-79586679 MS.gene064059:CDS 35.0%
!! AATAACACTAAGGGAGTGTT+TGG + chr6.1:79587105-79587124 None:intergenic 35.0%
!! ACTCTCAATTTTTCTAGCGA+TGG - chr6.1:79588564-79588583 MS.gene064059:intron 35.0%
!! AGAAAGTTACCTTGATTTGG+TGG - chr6.1:79586574-79586593 MS.gene064059:CDS 35.0%
!!! AGTAGTCTTGTTTTCTGTTG+AGG - chr6.1:79588629-79588648 MS.gene064059:intron 35.0%
!!! GTAGTCTTGTTTTCTGTTGA+GGG - chr6.1:79588630-79588649 MS.gene064059:intron 35.0%
AAAGAAAAGAACGGGCAAAG+TGG - chr6.1:79588104-79588123 MS.gene064059:intron 40.0%
AACTTCGCTGATCTTGTTGA+AGG - chr6.1:79586487-79586506 MS.gene064059:CDS 40.0%
ACTTCGCTGATCTTGTTGAA+GGG - chr6.1:79586488-79586507 MS.gene064059:CDS 40.0%
AGAAGCAATTCAACCTTGAC+AGG + chr6.1:79586403-79586422 None:intergenic 40.0%
AGGCAATTCAACTGACTATG+TGG - chr6.1:79586280-79586299 MS.gene064059:CDS 40.0%
ATACGACCATCTGCTAACAA+AGG + chr6.1:79586769-79586788 None:intergenic 40.0%
CAGACACTTCACATTCTAGA+TGG - chr6.1:79588324-79588343 MS.gene064059:intron 40.0%
CCAAAGTAGTGCTTACAAGT+TGG - chr6.1:79586986-79587005 MS.gene064059:CDS 40.0%
CCAACTTGTAAGCACTACTT+TGG + chr6.1:79586989-79587008 None:intergenic 40.0%
CTGTCAGAATGGAACAAAGT+TGG + chr6.1:79589200-79589219 None:intergenic 40.0%
GAATGCCTGCAAATTACTCA+TGG - chr6.1:79588947-79588966 MS.gene064059:intron 40.0%
GAATGGAACAAAGTTGGACA+AGG + chr6.1:79589194-79589213 None:intergenic 40.0%
GCAAAAATTTCCAATCCCTC+AGG + chr6.1:79586679-79586698 None:intergenic 40.0%
GCAACAATTGTCAAGCATTC+AGG - chr6.1:79586334-79586353 MS.gene064059:CDS 40.0%
GCTACGATCATTACTTAAGG+AGG + chr6.1:79588859-79588878 None:intergenic 40.0%
GCTATAGCATTTAAGTGGCT+TGG - chr6.1:79587223-79587242 MS.gene064059:CDS 40.0%
GGCCATATTACTATATGTCG+TGG + chr6.1:79586968-79586987 None:intergenic 40.0%
GGTTTCCAATGTCTCACAAA+GGG - chr6.1:79587323-79587342 MS.gene064059:intron 40.0%
GTAAAGGTTCCACCAAATCA+AGG + chr6.1:79586586-79586605 None:intergenic 40.0%
TACGACCATCTGCTAACAAA+GGG + chr6.1:79586768-79586787 None:intergenic 40.0%
TAGTCAGTTGAATTGCCTAC+TGG + chr6.1:79586278-79586297 None:intergenic 40.0%
TATGGGGAAGGTTTATGTTG+TGG - chr6.1:79588773-79588792 MS.gene064059:intron 40.0%
TATTCAAGCACTTGCGAATC+CGG + chr6.1:79587400-79587419 None:intergenic 40.0%
TCAAATGGTATCAGAGAGAC+TGG - chr6.1:79587302-79587321 MS.gene064059:intron 40.0%
TCTACTTCTGTCTTATAGGC+AGG - chr6.1:79589111-79589130 MS.gene064059:intron 40.0%
TCTGATACACACTGTCAGAA+TGG + chr6.1:79589211-79589230 None:intergenic 40.0%
TCTGTAGGCAAAGCAAATGA+TGG - chr6.1:79586224-79586243 MS.gene064059:CDS 40.0%
TGGATGATAACACGATTGAC+TGG - chr6.1:79588172-79588191 MS.gene064059:intron 40.0%
TGGTTTCCAATGTCTCACAA+AGG - chr6.1:79587322-79587341 MS.gene064059:intron 40.0%
TGTCAAGCATTCAGGTGAAT+AGG - chr6.1:79586342-79586361 MS.gene064059:CDS 40.0%
TTCAACAAGATCAGCGAAGT+TGG + chr6.1:79586488-79586507 None:intergenic 40.0%
! AAGTAGTGCTTACAAGTTGG+TGG - chr6.1:79586989-79587008 MS.gene064059:CDS 40.0%
! AGAATGTGAAGTGTCTGAGA+AGG + chr6.1:79588321-79588340 None:intergenic 40.0%
! GATATGGACTTCTGACTTGT+TGG + chr6.1:79587717-79587736 None:intergenic 40.0%
! TTGTTTTCTGTTGAGGGTCT+CGG - chr6.1:79588636-79588655 MS.gene064059:intron 40.0%
!! CTCAATTTTTCTAGCGATGG+AGG - chr6.1:79588567-79588586 MS.gene064059:intron 40.0%
!! GATAGGGACTTTGGTGTTAT+CGG - chr6.1:79587169-79587188 MS.gene064059:CDS 40.0%
!!! TTCTTGACAGCTGGCTTTTA+GGG - chr6.1:79587249-79587268 MS.gene064059:CDS 40.0%
AGAAGGAGAAGGAAAAGGAG+GGG + chr6.1:79588304-79588323 None:intergenic 45.0%
ATTGTTGCAGATGCTCTGCA+AGG + chr6.1:79586322-79586341 None:intergenic 45.0%
GAAGAACAAGCTGGCGATAA+TGG + chr6.1:79588393-79588412 None:intergenic 45.0%
GAGAAGGAGAAGGAAAAGGA+GGG + chr6.1:79588305-79588324 None:intergenic 45.0%
GTCTGAGAAGGAGAAGGAAA+AGG + chr6.1:79588309-79588328 None:intergenic 45.0%
TACAGAAAAGGTGAGCTGCT+TGG - chr6.1:79587743-79587762 MS.gene064059:intron 45.0%
TGAGAAGGAGAAGGAAAAGG+AGG + chr6.1:79588306-79588325 None:intergenic 45.0%
TGTAACTCCTGCATAGCACA+AGG + chr6.1:79587477-79587496 None:intergenic 45.0%
TTGTTGCAGATGCTCTGCAA+GGG + chr6.1:79586321-79586340 None:intergenic 45.0%
! AAGCTGGCGATAATGGTTGT+AGG + chr6.1:79588386-79588405 None:intergenic 45.0%
! AGGCAAAGCAAATGATGGAG+AGG - chr6.1:79586229-79586248 MS.gene064059:CDS 45.0%
! CAAGATCAGCGAAGTTGGTT+AGG + chr6.1:79586483-79586502 None:intergenic 45.0%
! GGCAAAGCAAATGATGGAGA+GGG - chr6.1:79586230-79586249 MS.gene064059:CDS 45.0%
! TGAAGTGTCTGAGAAGGAGA+AGG + chr6.1:79588315-79588334 None:intergenic 45.0%
!! TGATCGTAGCAAGAAGCGTT+TGG - chr6.1:79588869-79588888 MS.gene064059:intron 45.0%
!!! CTTCTTGACAGCTGGCTTTT+AGG - chr6.1:79587248-79587267 MS.gene064059:CDS 45.0%
!! ATAATTTATATTTACATATA+AGG + chr6.1:79588079-79588098 None:intergenic 5.0%
AATTGCCTACTGGTGCACTG+CGG + chr6.1:79586268-79586287 None:intergenic 50.0%
ACAAAGGGCTACCTCCAGAA+GGG - chr6.1:79587338-79587357 MS.gene064059:intron 50.0%
AGCTTTCCAGTTAGCCCTTC+TGG + chr6.1:79587355-79587374 None:intergenic 50.0%
ATATTCCGCAGTGCACCAGT+AGG - chr6.1:79586260-79586279 MS.gene064059:CDS 50.0%
GAAGGAGAAGGAAAAGGAGG+GGG + chr6.1:79588303-79588322 None:intergenic 50.0%
GCATGTGTTTCCTGAGGGAT+TGG - chr6.1:79586666-79586685 MS.gene064059:CDS 50.0%
GGTAGCCCTTTGTGAGACAT+TGG + chr6.1:79587331-79587350 None:intergenic 50.0%
GTAAAGCTTCGTTGTGCAGC+CGG - chr6.1:79587378-79587397 MS.gene064059:intron 50.0%
TTTCCAGTTAGCCCTTCTGG+AGG + chr6.1:79587352-79587371 None:intergenic 50.0%
! GCTTGGTTCTTCTTGACAGC+TGG - chr6.1:79587240-79587259 MS.gene064059:CDS 50.0%
! GTCGCGTGGAAGTCTTTTTG+TGG - chr6.1:79588896-79588915 MS.gene064059:intron 50.0%
!! AGGGACTTTGGTGTTATCGG+AGG - chr6.1:79587172-79587191 MS.gene064059:CDS 50.0%
!! TCGTAGCAAGAAGCGTTTGG+TGG - chr6.1:79588872-79588891 MS.gene064059:intron 50.0%
CACAAAGGGCTACCTCCAGA+AGG - chr6.1:79587337-79587356 MS.gene064059:intron 55.0%
CTACCTCCAGAAGGGCTAAC+TGG - chr6.1:79587346-79587365 MS.gene064059:intron 55.0%
TGTTGAGGGTCTCGGTCAGA+TGG - chr6.1:79588644-79588663 MS.gene064059:intron 55.0%
AGAACGGGCAAAGTGGCAGC+AGG - chr6.1:79588111-79588130 MS.gene064059:intron 60.0%
GAACGGGCAAAGTGGCAGCA+GGG - chr6.1:79588112-79588131 MS.gene064059:intron 60.0%
GTGGCAGCAGGGACAGATGA+CGG - chr6.1:79588123-79588142 MS.gene064059:intron 60.0%
! AAGCGTTTGGTGGAGTCGCG+TGG - chr6.1:79588882-79588901 MS.gene064059:intron 60.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 79586079 79589238 79586079 ID=MS.gene064059
chr6.1 mRNA 79586079 79589238 79586079 ID=MS.gene064059.t1;Parent=MS.gene064059
chr6.1 exon 79589223 79589238 79589223 ID=MS.gene064059.t1.exon1;Parent=MS.gene064059.t1
chr6.1 CDS 79589223 79589238 79589223 ID=cds.MS.gene064059.t1;Parent=MS.gene064059.t1
chr6.1 exon 79588962 79589086 79588962 ID=MS.gene064059.t1.exon2;Parent=MS.gene064059.t1
chr6.1 CDS 79588962 79589086 79588962 ID=cds.MS.gene064059.t1;Parent=MS.gene064059.t1
chr6.1 exon 79588376 79588428 79588376 ID=MS.gene064059.t1.exon3;Parent=MS.gene064059.t1
chr6.1 CDS 79588376 79588428 79588376 ID=cds.MS.gene064059.t1;Parent=MS.gene064059.t1
chr6.1 exon 79587565 79587633 79587565 ID=MS.gene064059.t1.exon4;Parent=MS.gene064059.t1
chr6.1 CDS 79587565 79587633 79587565 ID=cds.MS.gene064059.t1;Parent=MS.gene064059.t1
chr6.1 exon 79586079 79587303 79586079 ID=MS.gene064059.t1.exon5;Parent=MS.gene064059.t1
chr6.1 CDS 79586079 79587303 79586079 ID=cds.MS.gene064059.t1;Parent=MS.gene064059.t1
Gene Sequence

>MS.gene064059

ATGTCATTGTTCGAATGTAATAATCCATTCAGTAACATTTTTGTATATTGATGCAATTATACTTAGTTGAAAGTCGCATTGCCTTGTTATAGTAAATTGATTTCAGTGTTTACTCTTGTTTATTACATATTGAAGTTTATAACTATCTGTAGGCAAAGCAAATGATGGAGAGGGTTCAGATATATTCCGCAGTGCACCAGTAGGCAATTCAACTGACTATGTGGAGCTTTTAGCAGCAACCCTTGCAGAGCATCTGCAACAATTGTCAAGCATTCAGGTGAATAGGTGATGCATTAGAACATGTCTTAAAATATGCAAAATCCTGTCAAGGTTGAATTGCTTCTAAAGGCAGAATCATTTTATATTTGTCATGTTGTTTTTGATAAAGTTTTTAGGCAACTCCTAACCAACTTCGCTGATCTTGTTGAAGGGATTAATGTCCTTAATGATTTTGACATTAATTAGGTGATTGGTCTACTTTGAACTTGTATATGCAGAAAGTTACCTTGATTTGGTGGAACCTTTACTTTTGTTTTGGGGTGTTGTTTATGTGAGTATACAAATAGTTTTGTTTTTAGATCTTTTATGCATGTGTTTCCTGAGGGATTGGAAATTTTTGCTTTATATGTCTTGTCTCAGTGTTTGTCGACAGTACCTTCTTTTAAGTTGCAAACAGACTTTATTTACCCTTTGTTAGCAGATGGTCGTATATAATTGTTATTATTACTACTAGGCGTTTAGGTAAACTACTTAATTAAGCATTTACGCAAAAAAAACAATGCTTATCATTTAAGCACTTATGTATTGTAGAATGAAAGAGGTGATGTGTTTAAACTGCTTATTGTGGAGGTTACTGAAATAAGGTAAAAACAACTTGTTGAGAGTCCCACGACATATAGTAATATGGCCAAAGTAGTGCTTACAAGTTGGTGGATATCCATGACTTTACAAACTGATTTTGTAGGGTTGAGTTAGAGCCAATCCAAATTTTAAGATAAGCATTTAAACAAGTTATAAGCTATTCCAAACACTCCCTTAGTGTTATTTATATGTGGCTTATTTGTTAATGCAAGTAGATAAGTAAAATGCTGATAGGGACTTTGGTGTTATCGGAGGCCTAAATCTAACATCATATGAGATTCTTGCTATAGCATTTAAGTGGCTTGGTTCTTCTTGACAGCTGGCTTTTAGGGAGATTTCTCTTAAGTGCTCTTGACTACTTATCAAATGGTATCAGAGAGACTGGTTTCCAATGTCTCACAAAGGGCTACCTCCAGAAGGGCTAACTGGAAAGCTCAAGTAAAGCTTCGTTGTGCAGCCGGATTCGCAAGTGCTTGAATACTTGTCAAATAACTAGTTAACTTTTTCCTATGAGATATGTATAAAGCAATTAAACCTTGTGCTATGCAGGAGTTACATTGCTTTTATCAATTACCTGCTGGTTCTACAGATAAATATTCATATATAGTTGAATGTGTCTTTTGCTCTAATCACAATAGCGGTTTAGTATCTTATACAGAGTAGACCATTAGTAACGGTTATATACTCGAAAGATTGATTGATTCAGATCTTGGAATTTCACATTGTTGCATTTTTTATTTGCAGGTGTTTATTAACTGACTCAAAGACATTGTGCCAACAAGTCAGAAGTCCATATCATAGTGTACAGAAAAGGTGAGCTGCTTGGCCTTCAGACAAAGAATCTTTCTGATAGGAAATCTTTGGTGGCTCCTTCAAGTAACAAAGAGTCAAGTTCAGAAAGTGATTAAAGAGTGAGTAAATATTTGATGCCCCTCCTGTTTTTCAATAAAAATTTGGGATATTTGTTGCTATGTTTGTTTACATTTCATATCAGTTTTTATTGTATTCAATGCATATGATGATGATAATGATAGAAATCATTCAATTTTTTCAATTATTTTCATTTTGGTGCAGGCTATTGAAATCGTATGATCTTCATGGTGTATTCAATGTTATGCAAAAATATCTCGTGGATTCCTTATATGTAAATATAAATTATTCAAAAAAGAAAAGAACGGGCAAAGTGGCAGCAGGGACAGATGACGGAGACTTGAAGAAAAAGTGTGTGATGATGGATGATAACACGATTGACTGGCTAAATCTTCCTCAAGAATTATGGTTAGTTATTATATCCAAGAATTTGAATACATTCGATGTTCTTCGGTTCCATAGTGTCTGTGCTTTATTGTGCTCTATTCTTCCCCCTCCTTTTCCTTCTCCTTCTCAGACACTTCACATTCTAGATGGTAAGTTTTTGCTATTCACCGAAACCAAAATATTTCGCCTACAACCATTATCGCCAGCTTGTTCTTCTAATAAAGGGTGGATCATAAAGGTTGAAAAATCGAAATCTGGCAGATTTCGTCACTTAGATATTGTCACTAACACTCATATCTCACACACATTCTCATCTAATGTGTTAGATTTCATGAACTTACGAGTTAAGGAATTGTTTCAAACATATACTCTCAATTTTTCTAGCGATGGAGGTGATTTAATTGCATTTGAGCCCCTTAATGATGTTTATAAAGTAGTCTTGTTTTCTGTTGAGGGTCTCGGTCAGATGGTCTTTGCTCTTCATAAAGATGGAAAATTGCGAGTTTCCAATATTGGATATAACAATTTGATTATAGTGGATGATGGGAATAGAATCTATAATGATATAATCCTTTATATGGGGAAGGTTTATGTTGTGGATAAGAGTGGAATTATTTTCTGGATCAATTGTTCATCCTTTAAGTTGGTTCAGTGTTCACCCTCCTTAAGTAATGATCGTAGCAAGAAGCGTTTGGTGGAGTCGCGTGGAAGTCTTTTTGTGGTTGAAATGTATTCTAGAAGAACTAGTGTGAATGCCTGCAAATTACTCATGGAAATCAGTGTTTTAAACGTTGATGGAGAATCAAGTAGATGGCTTCGTGTAACAAATTTGGGTGATGTTATGTTTGTTTTGGGCAAAAACTTAAACTTTTCATTGTCTGCTAACGATTATTATGGATTGGAAAGAAATTGCATCTACTTCTGTCTTATAGGCAGGACTGCTCGTTACAGCTTGAATAATTTCGGATTTAAGTACGTTGATGACATTTTTTGGCCTTGTCCAACTTTGTTCCATTCTGACAGTGTGTATCAGATCCAGTGA

Protein sequence

>MS.gene064059.t1

MSLFECKANDGEGSDIFRSAPVGNSTDYVELLAATLAEHLQQLSSIQNERGDVFKLLIVEVTEIRCLLTDSKTLCQQVRSPYHSVQKRLLKSYDLHGVFNVMQKYLVDSLYVNINYSKKKRTGKVAAGTDDGDLKKKCVMMDDNTIDWLNLPQELWLVIISKNLNTFDVLRFHSVCALLCSILPPPFPSPSQTLHILDGKFLLFTETKIFRLQPLSPACSSNKGWIIKVEKSKSGRFRHLDIVTNTHISHTFSSNVLDFMNLRVKELFQTYTLNFSSDGGDLIAFEPLNDVYKVVLFSVEGLGQMVFALHKDGKLRVSNIGYNNLIIVDDGNRIYNDIILYMGKVYVVDKSGIIFWINCSSFKLVQCSPSLSNDRSKKRLVESRGSLFVVEMYSRRTSVNACKLLMEISVLNVDGESSRWLRVTNLGDVMFVLGKNLNFSLSANDYYGLERNCIYFCLIGRTARYSLNNFGFKYVDDIFWPCPTLFHSDSVYQIQ