Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23495.t1 | XP_013449881.1 | 67.6 | 377 | 110 | 5 | 1 | 367 | 6 | 380 | 4.80E-137 | 497.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23495.t1 | Q9C6X9 | 29.4 | 344 | 207 | 8 | 10 | 348 | 7 | 319 | 3.6e-32 | 140.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23495.t1 | A0A072U2J1 | 67.6 | 377 | 110 | 5 | 1 | 367 | 6 | 380 | 3.4e-137 | 497.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene23495 | MS.gene39445 | PPI |
| MS.gene037197 | MS.gene23495 | PPI |
| MS.gene23495 | MS.gene08770 | PPI |
| MS.gene23495 | MS.gene025209 | PPI |
| MS.gene91760 | MS.gene23495 | PPI |
| MS.gene23495 | MS.gene64423 | PPI |
| MS.gene23495 | MS.gene44190 | PPI |
| MS.gene23495 | MS.gene28904 | PPI |
| MS.gene23495 | MS.gene66307 | PPI |
| MS.gene23495 | MS.gene44191 | PPI |
| MS.gene23495 | MS.gene30094 | PPI |
| MS.gene23497 | MS.gene23495 | PPI |
| MS.gene30094 | MS.gene23495 | PPI |
| MS.gene23495 | MS.gene049886 | PPI |
| MS.gene23495 | MS.gene017581 | PPI |
| MS.gene23495 | MS.gene023531 | PPI |
| MS.gene44190 | MS.gene23495 | PPI |
| MS.gene23495 | MS.gene018718 | PPI |
| MS.gene23495 | MS.gene97013 | PPI |
| MS.gene012159 | MS.gene23495 | PPI |
| MS.gene23495 | MS.gene064059 | PPI |
| MS.gene23495 | MS.gene23497 | PPI |
| MS.gene23495 | MS.gene28903 | PPI |
| MS.gene23495 | MS.gene91760 | PPI |
| MS.gene23495 | MS.gene037197 | PPI |
| MS.gene64423 | MS.gene23495 | PPI |
| MS.gene23495 | MS.gene012159 | PPI |
| MS.gene23495 | MS.gene012160 | PPI |
| MS.gene23495 | MS.gene017582 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23495.t1 | MTR_7g096720 | 67.810 | 379 | 110 | 5 | 1 | 369 | 6 | 382 | 3.94e-175 | 492 |
| MS.gene23495.t1 | MTR_4g088925 | 63.128 | 358 | 118 | 6 | 16 | 369 | 34 | 381 | 5.78e-143 | 410 |
| MS.gene23495.t1 | MTR_8g085760 | 54.688 | 384 | 150 | 8 | 1 | 367 | 6 | 382 | 9.68e-131 | 380 |
| MS.gene23495.t1 | MTR_6g092570 | 46.027 | 365 | 158 | 14 | 12 | 365 | 12 | 348 | 2.48e-81 | 253 |
| MS.gene23495.t1 | MTR_5g079830 | 43.207 | 368 | 165 | 14 | 12 | 362 | 10 | 350 | 1.32e-72 | 231 |
| MS.gene23495.t1 | MTR_8g074640 | 36.559 | 372 | 192 | 12 | 1 | 348 | 1 | 352 | 1.94e-55 | 186 |
| MS.gene23495.t1 | MTR_8g074610 | 37.731 | 379 | 186 | 15 | 10 | 360 | 27 | 383 | 1.97e-55 | 187 |
| MS.gene23495.t1 | MTR_2g041510 | 36.292 | 383 | 196 | 13 | 1 | 360 | 1 | 358 | 8.03e-53 | 179 |
| MS.gene23495.t1 | MTR_2g041510 | 36.719 | 384 | 193 | 14 | 1 | 360 | 21 | 378 | 1.47e-52 | 179 |
| MS.gene23495.t1 | MTR_4g125090 | 39.809 | 314 | 135 | 13 | 12 | 318 | 49 | 315 | 5.60e-49 | 167 |
| MS.gene23495.t1 | MTR_7g096760 | 81.915 | 94 | 16 | 1 | 216 | 308 | 1 | 94 | 1.24e-44 | 150 |
| MS.gene23495.t1 | MTR_3g030050 | 25.472 | 424 | 220 | 16 | 10 | 361 | 18 | 417 | 2.61e-21 | 95.1 |
| MS.gene23495.t1 | MTR_3g058460 | 25.714 | 385 | 224 | 14 | 10 | 361 | 17 | 372 | 5.42e-21 | 93.6 |
| MS.gene23495.t1 | MTR_3g029650 | 28.736 | 348 | 194 | 14 | 6 | 335 | 3 | 314 | 3.87e-18 | 86.7 |
| MS.gene23495.t1 | MTR_2g047180 | 23.724 | 392 | 224 | 14 | 10 | 361 | 6 | 362 | 7.06e-18 | 84.3 |
| MS.gene23495.t1 | MTR_1g026850 | 25.995 | 377 | 230 | 15 | 10 | 361 | 8 | 360 | 1.42e-17 | 83.6 |
| MS.gene23495.t1 | MTR_6g018400 | 25.419 | 358 | 189 | 12 | 10 | 333 | 7 | 320 | 1.54e-17 | 83.6 |
| MS.gene23495.t1 | MTR_3g030080 | 24.937 | 397 | 216 | 17 | 10 | 361 | 9 | 368 | 6.78e-16 | 78.6 |
| MS.gene23495.t1 | MTR_3g029920 | 24.857 | 350 | 204 | 12 | 12 | 335 | 13 | 329 | 7.56e-13 | 69.7 |
| MS.gene23495.t1 | MTR_3g114990 | 24.507 | 355 | 225 | 13 | 10 | 339 | 25 | 361 | 1.04e-12 | 69.3 |
| MS.gene23495.t1 | MTR_3g029800 | 23.988 | 346 | 207 | 11 | 10 | 335 | 6 | 315 | 1.44e-11 | 65.5 |
| MS.gene23495.t1 | MTR_3g029640 | 23.096 | 394 | 224 | 14 | 10 | 362 | 6 | 361 | 7.94e-11 | 63.2 |
| MS.gene23495.t1 | MTR_3g030560 | 23.796 | 353 | 210 | 12 | 10 | 335 | 6 | 326 | 9.29e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23495.t1 | AT1G44080 | 29.360 | 344 | 207 | 8 | 10 | 348 | 7 | 319 | 1.79e-33 | 127 |
| MS.gene23495.t1 | AT1G65770 | 28.453 | 362 | 204 | 12 | 10 | 348 | 5 | 334 | 7.45e-33 | 126 |
| MS.gene23495.t1 | AT2G26160 | 28.571 | 343 | 221 | 8 | 10 | 347 | 7 | 330 | 2.52e-32 | 124 |
| MS.gene23495.t1 | AT1G65740 | 27.577 | 359 | 223 | 9 | 10 | 348 | 5 | 346 | 1.53e-31 | 122 |
| MS.gene23495.t1 | AT3G25750 | 30.088 | 339 | 184 | 13 | 10 | 335 | 7 | 305 | 1.23e-29 | 117 |
| MS.gene23495.t1 | AT3G25750 | 28.824 | 340 | 201 | 11 | 10 | 335 | 7 | 319 | 2.69e-28 | 114 |
| MS.gene23495.t1 | AT4G35733 | 28.000 | 350 | 215 | 10 | 10 | 346 | 8 | 333 | 1.88e-27 | 111 |
| MS.gene23495.t1 | AT1G65760 | 27.701 | 361 | 190 | 11 | 6 | 335 | 3 | 323 | 2.15e-27 | 111 |
| MS.gene23495.t1 | AT2G17030 | 28.158 | 380 | 205 | 16 | 10 | 351 | 5 | 354 | 2.68e-23 | 100 |
| MS.gene23495.t1 | AT2G17690 | 26.316 | 285 | 163 | 10 | 10 | 272 | 5 | 264 | 4.12e-15 | 76.6 |
| MS.gene23495.t1 | AT2G17036 | 24.242 | 396 | 233 | 16 | 12 | 361 | 6 | 380 | 4.28e-14 | 73.6 |
| MS.gene23495.t1 | AT2G17036 | 24.242 | 396 | 233 | 16 | 12 | 361 | 7 | 381 | 4.97e-14 | 73.2 |
| MS.gene23495.t1 | AT1G57906 | 28.279 | 244 | 122 | 12 | 110 | 326 | 11 | 228 | 2.56e-11 | 63.5 |
Find 57 sgRNAs with CRISPR-Local
Find 72 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTTATGTTGTGGATAAAA+TGG | 0.170692 | 7.3:+14582392 | MS.gene23495:CDS |
| CATATCTTCCTGAAGAATTA+TGG | 0.174102 | 7.3:+14581794 | MS.gene23495:CDS |
| ACTTCTTCTTGTTCTAATAA+AGG | 0.211089 | 7.3:+14582006 | MS.gene23495:CDS |
| TCCACCATCATCCTTTAATA+TGG | 0.252077 | 7.3:-14582328 | None:intergenic |
| GGGTGATGTTTCGTTTGTTT+TGG | 0.269127 | 7.3:+14582680 | MS.gene23495:CDS |
| ATGGTTAGATGTAAAAGATT+TGG | 0.281291 | 7.3:+14582659 | MS.gene23495:CDS |
| TTTCAACTTGGAGAATTTAG+AGG | 0.305854 | 7.3:+14582794 | MS.gene23495:CDS |
| CTTCTTCTTGTTCTAATAAA+GGG | 0.306699 | 7.3:+14582007 | MS.gene23495:CDS |
| ATAATTTCCCATAATTCTTC+AGG | 0.324466 | 7.3:-14581802 | None:intergenic |
| TTGATCAAGAATGGGGTAAA+TGG | 0.326226 | 7.3:+14582640 | MS.gene23495:CDS |
| TTCATCAAATTCAACACTTT+AGG | 0.328588 | 7.3:-14582126 | None:intergenic |
| AGACTCAAACATTGCATTGT+TGG | 0.341865 | 7.3:+14582707 | MS.gene23495:CDS |
| TGGTTAGATGTAAAAGATTT+GGG | 0.347718 | 7.3:+14582660 | MS.gene23495:CDS |
| TGGTTGAATGCGGTATATTT+TGG | 0.350450 | 7.3:-14581959 | None:intergenic |
| CAATGCTTTGTCTTTGAAGT+TGG | 0.363091 | 7.3:+14582431 | MS.gene23495:CDS |
| TTAGAACAAGAAGAAGTTGA+TGG | 0.363611 | 7.3:-14582000 | None:intergenic |
| ATATCTTCCTGAAGAATTAT+GGG | 0.363732 | 7.3:+14581795 | MS.gene23495:CDS |
| TCCGCAGTACTTGTAGTTCA+TGG | 0.380067 | 7.3:+14581863 | MS.gene23495:CDS |
| CAGGACTTCTTGTTTCAACT+TGG | 0.381282 | 7.3:+14582782 | MS.gene23495:CDS |
| TTTATAAGCTTGATCAAGAA+TGG | 0.392244 | 7.3:+14582631 | MS.gene23495:CDS |
| GATGAATATGAATGACAAAA+AGG | 0.393608 | 7.3:+14581759 | None:intergenic |
| CTTTATGTTGTGGATAAAAT+GGG | 0.396836 | 7.3:+14582393 | MS.gene23495:CDS |
| AAGTTGAAAGTGTCTAATAT+TGG | 0.417696 | 7.3:+14582291 | MS.gene23495:CDS |
| TCGTGAGAGAGAGGTGGAGG+AGG | 0.431799 | 7.3:-14581898 | None:intergenic |
| TTATAAGCTTGATCAAGAAT+GGG | 0.450966 | 7.3:+14582632 | MS.gene23495:CDS |
| TTCTGTTGAGGGTCGTCGCA+TGG | 0.464033 | 7.3:+14582245 | MS.gene23495:CDS |
| TGATGATATAATACTTTACA+AGG | 0.467606 | 7.3:+14582365 | MS.gene23495:CDS |
| ATTTGTATATTGACGATGAA+AGG | 0.475996 | 7.3:+14582565 | MS.gene23495:CDS |
| ATCAAAGAGATAAAATTTGA+AGG | 0.482053 | 7.3:-14582061 | None:intergenic |
| CAAATTGGGTCACATATTGA+AGG | 0.498468 | 7.3:+14582593 | MS.gene23495:CDS |
| AGGTCGTGAGAGAGAGGTGG+AGG | 0.524922 | 7.3:-14581901 | None:intergenic |
| GACCTTTGCATTCCACATCA+AGG | 0.529468 | 7.3:+14581919 | MS.gene23495:CDS |
| CAAGGGACAACTTTATGTTG+TGG | 0.530035 | 7.3:+14582383 | MS.gene23495:CDS |
| GTGACAGGATGGAACAAAGT+TGG | 0.530217 | 7.3:-14582846 | None:intergenic |
| AATACCATATTAAAGGATGA+TGG | 0.535242 | 7.3:+14582324 | MS.gene23495:CDS |
| TTTGATGAACATTCGAGTTG+TGG | 0.535981 | 7.3:+14582140 | MS.gene23495:CDS |
| CATATTGAAGGCTATTTGTG+TGG | 0.549161 | 7.3:+14582605 | MS.gene23495:CDS |
| CTTCTTGTTCTAATAAAGGG+TGG | 0.561460 | 7.3:+14582010 | MS.gene23495:CDS |
| AAACAATTAGTAGAGTCTGA+TGG | 0.567913 | 7.3:+14582525 | MS.gene23495:CDS |
| GGTTCGTGATCATGCAATGA+TGG | 0.577634 | 7.3:-14581979 | None:intergenic |
| CAAGATTACTACGGATGTGA+AGG | 0.582722 | 7.3:+14582732 | MS.gene23495:CDS |
| TCTACTTCTATTGTGAAGAC+AGG | 0.586419 | 7.3:+14582763 | MS.gene23495:CDS |
| CAAATTAACTCGTGACAGGA+TGG | 0.587347 | 7.3:-14582857 | None:intergenic |
| ATCCTTGATGTGGAATGCAA+AGG | 0.593156 | 7.3:-14581921 | None:intergenic |
| CTTACAAATTAACTCGTGAC+AGG | 0.596567 | 7.3:-14582861 | None:intergenic |
| AGTAGAACAAATCCTTGATG+TGG | 0.613692 | 7.3:-14581931 | None:intergenic |
| ATGCAAAGGTCGTGAGAGAG+AGG | 0.614624 | 7.3:-14581907 | None:intergenic |
| CAAAGGTCGTGAGAGAGAGG+TGG | 0.624486 | 7.3:-14581904 | None:intergenic |
| TTGTTGGCTCAAGATTACTA+CGG | 0.627281 | 7.3:+14582723 | MS.gene23495:CDS |
| TATAAGCTTGATCAAGAATG+GGG | 0.627945 | 7.3:+14582633 | MS.gene23495:CDS |
| GATGATATAATACTTTACAA+GGG | 0.643392 | 7.3:+14582366 | MS.gene23495:CDS |
| ACCATATTAAAGGATGATGG+TGG | 0.644107 | 7.3:+14582327 | MS.gene23495:CDS |
| TAATAAGAGACTCCTATCGA+AGG | 0.647154 | 7.3:+14582092 | MS.gene23495:CDS |
| GGATGGAACAAAGTTGGACA+AGG | 0.682403 | 7.3:-14582840 | None:intergenic |
| GTCTGATGGAAATCTCTATG+TGG | 0.689360 | 7.3:+14582539 | MS.gene23495:CDS |
| GCCATGAACTACAAGTACTG+CGG | 0.714603 | 7.3:-14581864 | None:intergenic |
| CATGCAATGATGGTTGAATG+CGG | 0.773749 | 7.3:-14581969 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATGTCATAATTTTGATTTT+CGG | + | chr7.3:14582184-14582203 | MS.gene23495:CDS | 15.0% |
| !! | ACAGAAAAATACCATATTAA+AGG | + | chr7.3:14582317-14582336 | MS.gene23495:CDS | 20.0% |
| !! | ATCAAAGAGATAAAATTTGA+AGG | - | chr7.3:14582064-14582083 | None:intergenic | 20.0% |
| !! | GATGATATAATACTTTACAA+GGG | + | chr7.3:14582366-14582385 | MS.gene23495:CDS | 20.0% |
| !! | TGATGATATAATACTTTACA+AGG | + | chr7.3:14582365-14582384 | MS.gene23495:CDS | 20.0% |
| ! | AATACCATATTAAAGGATGA+TGG | + | chr7.3:14582324-14582343 | MS.gene23495:CDS | 25.0% |
| ! | ACTTCTTCTTGTTCTAATAA+AGG | + | chr7.3:14582006-14582025 | MS.gene23495:CDS | 25.0% |
| ! | ACTTTATGTTGTGGATAAAA+TGG | + | chr7.3:14582392-14582411 | MS.gene23495:CDS | 25.0% |
| ! | ATAATTTCCCATAATTCTTC+AGG | - | chr7.3:14581805-14581824 | None:intergenic | 25.0% |
| ! | ATATCTTCCTGAAGAATTAT+GGG | + | chr7.3:14581795-14581814 | MS.gene23495:CDS | 25.0% |
| ! | ATGGTTAGATGTAAAAGATT+TGG | + | chr7.3:14582659-14582678 | MS.gene23495:CDS | 25.0% |
| ! | ATTTGTATATTGACGATGAA+AGG | + | chr7.3:14582565-14582584 | MS.gene23495:CDS | 25.0% |
| ! | CTTCTTCTTGTTCTAATAAA+GGG | + | chr7.3:14582007-14582026 | MS.gene23495:CDS | 25.0% |
| ! | CTTTATGTTGTGGATAAAAT+GGG | + | chr7.3:14582393-14582412 | MS.gene23495:CDS | 25.0% |
| ! | TAAAAAGAGTAATATCTGGA+AGG | + | chr7.3:14582485-14582504 | MS.gene23495:CDS | 25.0% |
| ! | TGGTTAGATGTAAAAGATTT+GGG | + | chr7.3:14582660-14582679 | MS.gene23495:CDS | 25.0% |
| ! | TTATAAGCTTGATCAAGAAT+GGG | + | chr7.3:14582632-14582651 | MS.gene23495:CDS | 25.0% |
| ! | TTCATCAAATTCAACACTTT+AGG | - | chr7.3:14582129-14582148 | None:intergenic | 25.0% |
| ! | TTTATAAGCTTGATCAAGAA+TGG | + | chr7.3:14582631-14582650 | MS.gene23495:CDS | 25.0% |
| !! | ATAAAATGGGAACAATTTTC+TGG | + | chr7.3:14582406-14582425 | MS.gene23495:CDS | 25.0% |
| !! | GATGAAAGGTTTTACAAATT+GGG | + | chr7.3:14582579-14582598 | MS.gene23495:CDS | 25.0% |
| !!! | AAGTTGAAAGTGTCTAATAT+TGG | + | chr7.3:14582291-14582310 | MS.gene23495:CDS | 25.0% |
| !!! | TTACCACAACATAAGTTTTT+TGG | - | chr7.3:14582468-14582487 | None:intergenic | 25.0% |
| AAACAATTAGTAGAGTCTGA+TGG | + | chr7.3:14582525-14582544 | MS.gene23495:CDS | 30.0% | |
| CATATCTTCCTGAAGAATTA+TGG | + | chr7.3:14581794-14581813 | MS.gene23495:CDS | 30.0% | |
| GTGGTAAAAAGAGTAATATC+TGG | + | chr7.3:14582481-14582500 | MS.gene23495:CDS | 30.0% | |
| TATAAGCTTGATCAAGAATG+GGG | + | chr7.3:14582633-14582652 | MS.gene23495:CDS | 30.0% | |
| TCACCAAAAAACTTATGTTG+TGG | + | chr7.3:14582462-14582481 | MS.gene23495:CDS | 30.0% | |
| TTAGAACAAGAAGAAGTTGA+TGG | - | chr7.3:14582003-14582022 | None:intergenic | 30.0% | |
| TTTCAACTTGGAGAATTTAG+AGG | + | chr7.3:14582794-14582813 | MS.gene23495:CDS | 30.0% | |
| ! | CGATGAAAGGTTTTACAAAT+TGG | + | chr7.3:14582578-14582597 | MS.gene23495:CDS | 30.0% |
| ! | GATTTTCGGTTAAAACATGT+TGG | + | chr7.3:14582198-14582217 | MS.gene23495:CDS | 30.0% |
| !!! | AGTAATCTTGTTTTCTGTTG+AGG | + | chr7.3:14582233-14582252 | MS.gene23495:CDS | 30.0% |
| !!! | GTAATCTTGTTTTCTGTTGA+GGG | + | chr7.3:14582234-14582253 | MS.gene23495:CDS | 30.0% |
| AGACTCAAACATTGCATTGT+TGG | + | chr7.3:14582707-14582726 | MS.gene23495:CDS | 35.0% | |
| AGTAGAACAAATCCTTGATG+TGG | - | chr7.3:14581934-14581953 | None:intergenic | 35.0% | |
| CAAATTGGGTCACATATTGA+AGG | + | chr7.3:14582593-14582612 | MS.gene23495:CDS | 35.0% | |
| CATATTGAAGGCTATTTGTG+TGG | + | chr7.3:14582605-14582624 | MS.gene23495:CDS | 35.0% | |
| CTTCTTGTTCTAATAAAGGG+TGG | + | chr7.3:14582010-14582029 | MS.gene23495:CDS | 35.0% | |
| TAATAAGAGACTCCTATCGA+AGG | + | chr7.3:14582092-14582111 | MS.gene23495:CDS | 35.0% | |
| TCCACCATCATCCTTTAATA+TGG | - | chr7.3:14582331-14582350 | None:intergenic | 35.0% | |
| TCTACTTCTATTGTGAAGAC+AGG | + | chr7.3:14582763-14582782 | MS.gene23495:CDS | 35.0% | |
| TTGATCAAGAATGGGGTAAA+TGG | + | chr7.3:14582640-14582659 | MS.gene23495:CDS | 35.0% | |
| ! | ACCATATTAAAGGATGATGG+TGG | + | chr7.3:14582327-14582346 | MS.gene23495:CDS | 35.0% |
| ! | GTGGCTCATTAAAGTTTTTC+AGG | + | chr7.3:14582029-14582048 | MS.gene23495:CDS | 35.0% |
| ! | TGGTTGAATGCGGTATATTT+TGG | - | chr7.3:14581962-14581981 | None:intergenic | 35.0% |
| !! | CAATGCTTTGTCTTTGAAGT+TGG | + | chr7.3:14582431-14582450 | MS.gene23495:CDS | 35.0% |
| !! | GGTGATGTTTCGTTTGTTTT+GGG | + | chr7.3:14582681-14582700 | MS.gene23495:CDS | 35.0% |
| !! | TTGTTGGCTCAAGATTACTA+CGG | + | chr7.3:14582723-14582742 | MS.gene23495:CDS | 35.0% |
| !! | TTTGATGAACATTCGAGTTG+TGG | + | chr7.3:14582140-14582159 | MS.gene23495:CDS | 35.0% |
| !!! | CTAAGCCAGCTAACATTTTT+TGG | + | chr7.3:14582817-14582836 | MS.gene23495:CDS | 35.0% |
| !!! | GAATGCGGTATATTTTGGTT+TGG | - | chr7.3:14581957-14581976 | None:intergenic | 35.0% |
| !!! | GTGTAGTTTTATCCTTCGAT+AGG | - | chr7.3:14582107-14582126 | None:intergenic | 35.0% |
| ATCCTTGATGTGGAATGCAA+AGG | - | chr7.3:14581924-14581943 | None:intergenic | 40.0% | |
| CAAGATTACTACGGATGTGA+AGG | + | chr7.3:14582732-14582751 | MS.gene23495:CDS | 40.0% | |
| CAAGGCCAAAAAATGTTAGC+TGG | - | chr7.3:14582825-14582844 | None:intergenic | 40.0% | |
| CAAGGGACAACTTTATGTTG+TGG | + | chr7.3:14582383-14582402 | MS.gene23495:CDS | 40.0% | |
| CATGCAATGATGGTTGAATG+CGG | - | chr7.3:14581972-14581991 | None:intergenic | 40.0% | |
| GTCTGATGGAAATCTCTATG+TGG | + | chr7.3:14582539-14582558 | MS.gene23495:CDS | 40.0% | |
| ! | CAGGACTTCTTGTTTCAACT+TGG | + | chr7.3:14582782-14582801 | MS.gene23495:CDS | 40.0% |
| ! | GGGTGATGTTTCGTTTGTTT+TGG | + | chr7.3:14582680-14582699 | MS.gene23495:CDS | 40.0% |
| GACCTTTGCATTCCACATCA+AGG | + | chr7.3:14581919-14581938 | MS.gene23495:CDS | 45.0% | |
| GGATGGAACAAAGTTGGACA+AGG | - | chr7.3:14582843-14582862 | None:intergenic | 45.0% | |
| GGTTCGTGATCATGCAATGA+TGG | - | chr7.3:14581982-14582001 | None:intergenic | 45.0% | |
| GTGACAGGATGGAACAAAGT+TGG | - | chr7.3:14582849-14582868 | None:intergenic | 45.0% | |
| TCCGCAGTACTTGTAGTTCA+TGG | + | chr7.3:14581863-14581882 | MS.gene23495:CDS | 45.0% | |
| ! | GCCATGAACTACAAGTACTG+CGG | - | chr7.3:14581867-14581886 | None:intergenic | 45.0% |
| ATGCAAAGGTCGTGAGAGAG+AGG | - | chr7.3:14581910-14581929 | None:intergenic | 50.0% | |
| CAAAGGTCGTGAGAGAGAGG+TGG | - | chr7.3:14581907-14581926 | None:intergenic | 55.0% | |
| TTCTGTTGAGGGTCGTCGCA+TGG | + | chr7.3:14582245-14582264 | MS.gene23495:CDS | 55.0% | |
| AGGTCGTGAGAGAGAGGTGG+AGG | - | chr7.3:14581904-14581923 | None:intergenic | 60.0% | |
| TCGTGAGAGAGAGGTGGAGG+AGG | - | chr7.3:14581901-14581920 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 14581766 | 14582875 | 14581766 | ID=MS.gene23495 |
| chr7.3 | mRNA | 14581766 | 14582875 | 14581766 | ID=MS.gene23495.t1;Parent=MS.gene23495 |
| chr7.3 | exon | 14581766 | 14582875 | 14581766 | ID=MS.gene23495.t1.exon1;Parent=MS.gene23495.t1 |
| chr7.3 | CDS | 14581766 | 14582875 | 14581766 | ID=cds.MS.gene23495.t1;Parent=MS.gene23495.t1 |
| Gene Sequence |
| Protein sequence |
