Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30094.t1 | XP_013449881.1 | 73.2 | 377 | 93 | 3 | 1 | 371 | 6 | 380 | 1.60E-153 | 552.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30094.t1 | Q9C6X9 | 31.2 | 349 | 191 | 9 | 11 | 349 | 8 | 317 | 8.6e-34 | 146.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30094.t1 | A0A072U2J1 | 73.2 | 377 | 93 | 3 | 1 | 371 | 6 | 380 | 1.2e-153 | 552.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene30094 | MS.gene018718 | PPI |
| MS.gene30094 | MS.gene049886 | PPI |
| MS.gene30094 | MS.gene017581 | PPI |
| MS.gene44190 | MS.gene30094 | PPI |
| MS.gene23495 | MS.gene30094 | PPI |
| MS.gene30094 | MS.gene91760 | PPI |
| MS.gene30094 | MS.gene23495 | PPI |
| MS.gene30094 | MS.gene037197 | PPI |
| MS.gene30094 | MS.gene012159 | PPI |
| MS.gene012159 | MS.gene30094 | PPI |
| MS.gene30094 | MS.gene012160 | PPI |
| MS.gene30094 | MS.gene97013 | PPI |
| MS.gene30094 | MS.gene017582 | PPI |
| MS.gene30094 | MS.gene064059 | PPI |
| MS.gene30094 | MS.gene23497 | PPI |
| MS.gene30094 | MS.gene28903 | PPI |
| MS.gene30094 | MS.gene025209 | PPI |
| MS.gene64423 | MS.gene30094 | PPI |
| MS.gene30094 | MS.gene44190 | PPI |
| MS.gene30094 | MS.gene28904 | PPI |
| MS.gene30094 | MS.gene39445 | PPI |
| MS.gene037197 | MS.gene30094 | PPI |
| MS.gene91760 | MS.gene30094 | PPI |
| MS.gene30094 | MS.gene08770 | PPI |
| MS.gene30094 | MS.gene64423 | PPI |
| MS.gene30094 | MS.gene66307 | PPI |
| MS.gene23497 | MS.gene30094 | PPI |
| MS.gene30094 | MS.gene023531 | PPI |
| MS.gene30094 | MS.gene44191 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30094.t1 | MTR_7g096720 | 73.740 | 377 | 91 | 3 | 1 | 371 | 6 | 380 | 0.0 | 552 |
| MS.gene30094.t1 | MTR_4g088925 | 65.922 | 358 | 112 | 4 | 16 | 373 | 34 | 381 | 2.54e-151 | 432 |
| MS.gene30094.t1 | MTR_8g085760 | 54.400 | 375 | 143 | 11 | 11 | 368 | 16 | 379 | 1.35e-118 | 349 |
| MS.gene30094.t1 | MTR_6g092570 | 44.658 | 365 | 169 | 13 | 11 | 369 | 11 | 348 | 1.05e-71 | 228 |
| MS.gene30094.t1 | MTR_5g079830 | 44.318 | 352 | 161 | 14 | 11 | 353 | 9 | 334 | 2.64e-69 | 223 |
| MS.gene30094.t1 | MTR_8g074610 | 35.097 | 359 | 193 | 11 | 15 | 351 | 32 | 372 | 7.07e-54 | 183 |
| MS.gene30094.t1 | MTR_2g041510 | 37.566 | 378 | 178 | 15 | 1 | 351 | 1 | 347 | 2.31e-53 | 181 |
| MS.gene30094.t1 | MTR_2g041510 | 37.566 | 378 | 178 | 15 | 1 | 351 | 21 | 367 | 4.08e-53 | 181 |
| MS.gene30094.t1 | MTR_8g074640 | 33.333 | 381 | 197 | 14 | 1 | 352 | 1 | 353 | 3.81e-49 | 170 |
| MS.gene30094.t1 | MTR_4g125090 | 37.931 | 319 | 135 | 14 | 11 | 319 | 48 | 313 | 3.30e-44 | 155 |
| MS.gene30094.t1 | MTR_7g096760 | 70.213 | 94 | 26 | 2 | 218 | 310 | 1 | 93 | 3.12e-35 | 126 |
| MS.gene30094.t1 | MTR_3g030050 | 24.742 | 388 | 203 | 12 | 12 | 340 | 20 | 377 | 2.13e-19 | 89.4 |
| MS.gene30094.t1 | MTR_1g026850 | 24.642 | 349 | 210 | 12 | 12 | 341 | 10 | 324 | 2.42e-16 | 80.1 |
| MS.gene30094.t1 | MTR_3g058460 | 22.222 | 342 | 228 | 9 | 12 | 341 | 19 | 334 | 7.21e-15 | 75.5 |
| MS.gene30094.t1 | MTR_3g029650 | 24.789 | 355 | 190 | 13 | 12 | 338 | 9 | 314 | 3.24e-14 | 74.7 |
| MS.gene30094.t1 | MTR_6g018400 | 23.636 | 330 | 196 | 10 | 28 | 336 | 26 | 320 | 1.36e-13 | 71.6 |
| MS.gene30094.t1 | MTR_3g029800 | 23.200 | 375 | 221 | 12 | 11 | 359 | 7 | 340 | 8.50e-13 | 69.3 |
| MS.gene30094.t1 | MTR_3g030380 | 23.343 | 347 | 213 | 10 | 11 | 342 | 8 | 316 | 1.70e-12 | 68.6 |
| MS.gene30094.t1 | MTR_3g029950 | 23.446 | 354 | 205 | 10 | 12 | 342 | 11 | 321 | 4.84e-11 | 63.9 |
| MS.gene30094.t1 | MTR_3g029620 | 22.195 | 401 | 211 | 14 | 11 | 359 | 6 | 357 | 5.04e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30094.t1 | AT1G44080 | 31.054 | 351 | 193 | 9 | 11 | 351 | 8 | 319 | 4.32e-39 | 142 |
| MS.gene30094.t1 | AT1G65770 | 28.375 | 363 | 204 | 11 | 19 | 359 | 14 | 342 | 7.50e-38 | 139 |
| MS.gene30094.t1 | AT2G26160 | 29.217 | 332 | 210 | 7 | 23 | 350 | 20 | 330 | 1.51e-37 | 138 |
| MS.gene30094.t1 | AT4G35733 | 30.055 | 366 | 217 | 13 | 11 | 363 | 9 | 348 | 7.01e-31 | 120 |
| MS.gene30094.t1 | AT3G25750 | 28.150 | 373 | 213 | 13 | 11 | 369 | 8 | 339 | 7.51e-31 | 120 |
| MS.gene30094.t1 | AT3G25750 | 28.150 | 373 | 227 | 12 | 11 | 369 | 8 | 353 | 5.92e-30 | 118 |
| MS.gene30094.t1 | AT1G65740 | 28.763 | 372 | 215 | 13 | 11 | 357 | 6 | 352 | 3.18e-28 | 114 |
| MS.gene30094.t1 | AT1G65760 | 28.857 | 350 | 205 | 9 | 5 | 338 | 2 | 323 | 2.01e-24 | 103 |
| MS.gene30094.t1 | AT2G17030 | 26.171 | 363 | 207 | 15 | 11 | 338 | 6 | 342 | 2.40e-20 | 92.0 |
| MS.gene30094.t1 | AT2G17036 | 24.863 | 366 | 217 | 14 | 11 | 344 | 5 | 344 | 4.15e-15 | 76.6 |
| MS.gene30094.t1 | AT2G17036 | 24.863 | 366 | 217 | 14 | 11 | 344 | 6 | 345 | 4.28e-15 | 76.6 |
Find 64 sgRNAs with CRISPR-Local
Find 71 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTTATGTTGTAGATAATA+TGG | 0.178448 | 3.2:+42375176 | MS.gene30094:CDS |
| CACAATTCTTCAAGAAGATT+TGG | 0.198657 | 3.2:-42374571 | None:intergenic |
| TCCGCAGTATTTGTAGTTTA+TGG | 0.204499 | 3.2:+42374641 | MS.gene30094:CDS |
| AGTCGTTATGATGATAAAAT+TGG | 0.239302 | 3.2:+42374961 | MS.gene30094:CDS |
| GACATCCAAGAGATGGAATT+TGG | 0.248210 | 3.2:-42374842 | None:intergenic |
| CATTATACTTACAAATTAAC+TGG | 0.259230 | 3.2:-42375658 | None:intergenic |
| ACTTCTTCTTGTTCTAATAA+AGG | 0.268247 | 3.2:+42374784 | MS.gene30094:CDS |
| ATGATGATAAAATTGGTTCT+AGG | 0.292102 | 3.2:+42374968 | MS.gene30094:CDS |
| TGCACTATTGTGATGAAAAT+AGG | 0.305463 | 3.2:+42375259 | MS.gene30094:CDS |
| TGGTTGAATGCTGTATATTT+TGG | 0.321312 | 3.2:-42374737 | None:intergenic |
| TTGATCAAGAATGGGGTAAA+TGG | 0.326226 | 3.2:+42375427 | MS.gene30094:CDS |
| ATGGTTAGAAGTAAAAGATT+TGG | 0.332561 | 3.2:+42375446 | MS.gene30094:CDS |
| ATCCTCCAAATTCCATCTCT+TGG | 0.362838 | 3.2:+42374837 | MS.gene30094:CDS |
| ACAATTCTTCAAGAAGATTT+GGG | 0.367616 | 3.2:-42374570 | None:intergenic |
| TGGTTAGAAGTAAAAGATTT+GGG | 0.374795 | 3.2:+42375447 | MS.gene30094:CDS |
| TTTCAGTAGTTTCCTCAATT+CGG | 0.377113 | 3.2:-42374882 | None:intergenic |
| TTCTAGTGAGGGTCGTTGTA+TGG | 0.378472 | 3.2:+42375029 | MS.gene30094:CDS |
| CAAAAGGGGTTACTTCTTGA+AGG | 0.384442 | 3.2:+42375380 | MS.gene30094:CDS |
| GACAAGAAAATGTTGTCAAC+AGG | 0.389342 | 3.2:-42375609 | None:intergenic |
| TTTATAAGCTTGATCAAGAA+TGG | 0.392244 | 3.2:+42375418 | MS.gene30094:CDS |
| TTGTGAGGGGTAGGTGGAGG+AGG | 0.399257 | 3.2:-42374676 | None:intergenic |
| ATGATGAAAGGTATTACAAA+AGG | 0.404208 | 3.2:+42375364 | MS.gene30094:CDS |
| CTTCTTGTTCTAATAAAGGC+TGG | 0.414040 | 3.2:+42374788 | MS.gene30094:CDS |
| CAATGCTTTGTCCTTGAAGT+TGG | 0.422760 | 3.2:+42375215 | MS.gene30094:CDS |
| CAAATCTTCTTGAAGAATTG+TGG | 0.426488 | 3.2:+42374572 | MS.gene30094:CDS |
| TGATGAAAGGTATTACAAAA+GGG | 0.432135 | 3.2:+42375365 | MS.gene30094:CDS |
| CTTTATGTTGTAGATAATAT+GGG | 0.438590 | 3.2:+42375177 | MS.gene30094:CDS |
| TGATGATAAAATTGGTTCTA+GGG | 0.442982 | 3.2:+42374969 | MS.gene30094:CDS |
| TTATAAGCTTGATCAAGAAT+GGG | 0.450966 | 3.2:+42375419 | MS.gene30094:CDS |
| GTTATATATGCTAATTATGT+TGG | 0.461457 | 3.2:+42374991 | MS.gene30094:CDS |
| AAATCTTCTTGAAGAATTGT+GGG | 0.471775 | 3.2:+42374573 | MS.gene30094:CDS |
| AAAGAAACATATCAAAATAG+AGG | 0.476420 | 3.2:+42375101 | MS.gene30094:CDS |
| GTTGTAGAAATGCCACAATC+TGG | 0.476536 | 3.2:-42374763 | None:intergenic |
| TGAAAACTGAACCAACTTCA+AGG | 0.479490 | 3.2:-42375226 | None:intergenic |
| GAGTTGATTGTTTCCAACAT+TGG | 0.484992 | 3.2:+42375075 | MS.gene30094:CDS |
| ATGTTGTGAGGGGTAGGTGG+AGG | 0.491653 | 3.2:-42374679 | None:intergenic |
| TGACGATATAATACATTACA+AGG | 0.493104 | 3.2:+42375149 | MS.gene30094:CDS |
| ATTCTTCAAGTTGAAACAAG+AGG | 0.499533 | 3.2:-42375574 | None:intergenic |
| TTTGATGAACTTTCGAGTTG+TGG | 0.503494 | 3.2:+42374915 | MS.gene30094:CDS |
| CAAATGTTGTGAGGGGTAGG+TGG | 0.529285 | 3.2:-42374682 | None:intergenic |
| AAGCAATTAGTAGAGTATGA+TGG | 0.529382 | 3.2:+42375312 | MS.gene30094:CDS |
| GCTACATGATGAAACAAAGT+TGG | 0.533530 | 3.2:-42375636 | None:intergenic |
| GTGATGAAAATAGGCATACA+AGG | 0.549885 | 3.2:+42375268 | MS.gene30094:CDS |
| TAATAAGAGACTCCGAATTG+AGG | 0.556125 | 3.2:+42374870 | MS.gene30094:CDS |
| TAGTGAAGACATCCAAGAGA+TGG | 0.557700 | 3.2:-42374849 | None:intergenic |
| GATGAAAGGTATTACAAAAG+GGG | 0.559891 | 3.2:+42375366 | MS.gene30094:CDS |
| CATATCAAAATAGAGGATGA+TGG | 0.568179 | 3.2:+42375108 | MS.gene30094:CDS |
| CATGAATATGAATACGAAAG+TGG | 0.569457 | 3.2:+42374537 | None:intergenic |
| CAAGATTATGAAGGATGTGA+AGG | 0.569990 | 3.2:+42375519 | MS.gene30094:CDS |
| AAGCAAATGTTGTGAGGGGT+AGG | 0.570555 | 3.2:-42374685 | None:intergenic |
| ATCCAAGAGATGGAATTTGG+AGG | 0.589010 | 3.2:-42374839 | None:intergenic |
| ATATGTATATTAATGATGAA+AGG | 0.590203 | 3.2:+42375352 | MS.gene30094:CDS |
| AGTGAAAGCAAATGTTGTGA+GGG | 0.605960 | 3.2:-42374690 | None:intergenic |
| TTATTGGCTCAAGATTATGA+AGG | 0.613986 | 3.2:+42375510 | MS.gene30094:CDS |
| GACGATATAATACATTACAA+GGG | 0.615067 | 3.2:+42375150 | MS.gene30094:CDS |
| ATTCAACCATCACCAGATTG+TGG | 0.624188 | 3.2:+42374751 | MS.gene30094:CDS |
| TATAAGCTTGATCAAGAATG+GGG | 0.627945 | 3.2:+42375420 | MS.gene30094:CDS |
| GTGAAAGCAAATGTTGTGAG+GGG | 0.651949 | 3.2:-42374689 | None:intergenic |
| GAAATGCCACAATCTGGTGA+TGG | 0.665746 | 3.2:-42374757 | None:intergenic |
| ATCAAAATAGAGGATGATGG+TGG | 0.667308 | 3.2:+42375111 | MS.gene30094:CDS |
| TGATGAAAATAGGCATACAA+GGG | 0.680906 | 3.2:+42375269 | MS.gene30094:CDS |
| TAGTGAAAGCAAATGTTGTG+AGG | 0.685541 | 3.2:-42374691 | None:intergenic |
| GCCATAAACTACAAATACTG+CGG | 0.690280 | 3.2:-42374642 | None:intergenic |
| GTATGATGGAAGTCTATATG+TGG | 0.691573 | 3.2:+42375326 | MS.gene30094:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATGTATATTAATGATGAA+AGG | + | chr3.2:42375352-42375371 | MS.gene30094:CDS | 15.0% |
| !! | AAAGAAACATATCAAAATAG+AGG | + | chr3.2:42375101-42375120 | MS.gene30094:CDS | 20.0% |
| !! | ACTTTATGTTGTAGATAATA+TGG | + | chr3.2:42375176-42375195 | MS.gene30094:CDS | 20.0% |
| !! | CTTTATGTTGTAGATAATAT+GGG | + | chr3.2:42375177-42375196 | MS.gene30094:CDS | 20.0% |
| !! | GTTATATATGCTAATTATGT+TGG | + | chr3.2:42374991-42375010 | MS.gene30094:CDS | 20.0% |
| ! | AAATCTTCTTGAAGAATTGT+GGG | + | chr3.2:42374573-42374592 | MS.gene30094:CDS | 25.0% |
| ! | ACAATTCTTCAAGAAGATTT+GGG | - | chr3.2:42374573-42374592 | None:intergenic | 25.0% |
| ! | ACTTCTTCTTGTTCTAATAA+AGG | + | chr3.2:42374784-42374803 | MS.gene30094:CDS | 25.0% |
| ! | AGTCGTTATGATGATAAAAT+TGG | + | chr3.2:42374961-42374980 | MS.gene30094:CDS | 25.0% |
| ! | ATGGTTAGAAGTAAAAGATT+TGG | + | chr3.2:42375446-42375465 | MS.gene30094:CDS | 25.0% |
| ! | GACGATATAATACATTACAA+GGG | + | chr3.2:42375150-42375169 | MS.gene30094:CDS | 25.0% |
| ! | TGACGATATAATACATTACA+AGG | + | chr3.2:42375149-42375168 | MS.gene30094:CDS | 25.0% |
| ! | TGGTTAGAAGTAAAAGATTT+GGG | + | chr3.2:42375447-42375466 | MS.gene30094:CDS | 25.0% |
| ! | TTATAAGCTTGATCAAGAAT+GGG | + | chr3.2:42375419-42375438 | MS.gene30094:CDS | 25.0% |
| ! | TTTATAAGCTTGATCAAGAA+TGG | + | chr3.2:42375418-42375437 | MS.gene30094:CDS | 25.0% |
| !! | AGACTCAAATTTTGCATTAT+TGG | + | chr3.2:42375494-42375513 | MS.gene30094:CDS | 25.0% |
| !! | ATAATATGGGAACAATTTTC+TGG | + | chr3.2:42375190-42375209 | MS.gene30094:CDS | 25.0% |
| !! | ATGATGATAAAATTGGTTCT+AGG | + | chr3.2:42374968-42374987 | MS.gene30094:CDS | 25.0% |
| !!! | ATGATGAAAGGTATTACAAA+AGG | + | chr3.2:42375364-42375383 | MS.gene30094:CDS | 25.0% |
| !!! | TGATGAAAGGTATTACAAAA+GGG | + | chr3.2:42375365-42375384 | MS.gene30094:CDS | 25.0% |
| !!! | TGATGATAAAATTGGTTCTA+GGG | + | chr3.2:42374969-42374988 | MS.gene30094:CDS | 25.0% |
| AAGCAATTAGTAGAGTATGA+TGG | + | chr3.2:42375312-42375331 | MS.gene30094:CDS | 30.0% | |
| CAAATCTTCTTGAAGAATTG+TGG | + | chr3.2:42374572-42374591 | MS.gene30094:CDS | 30.0% | |
| CACAATTCTTCAAGAAGATT+TGG | - | chr3.2:42374574-42374593 | None:intergenic | 30.0% | |
| CATATCAAAATAGAGGATGA+TGG | + | chr3.2:42375108-42375127 | MS.gene30094:CDS | 30.0% | |
| TATAAGCTTGATCAAGAATG+GGG | + | chr3.2:42375420-42375439 | MS.gene30094:CDS | 30.0% | |
| TGATGAAAATAGGCATACAA+GGG | + | chr3.2:42375269-42375288 | MS.gene30094:CDS | 30.0% | |
| TGCACTATTGTGATGAAAAT+AGG | + | chr3.2:42375259-42375278 | MS.gene30094:CDS | 30.0% | |
| TTTCAGTAGTTTCCTCAATT+CGG | - | chr3.2:42374885-42374904 | None:intergenic | 30.0% | |
| ! | ATGTTTCTTTTCTCCAATGT+TGG | - | chr3.2:42375091-42375110 | None:intergenic | 30.0% |
| ! | TGGTTGAATGCTGTATATTT+TGG | - | chr3.2:42374740-42374759 | None:intergenic | 30.0% |
| !! | ATTCTTCAAGTTGAAACAAG+AGG | - | chr3.2:42375577-42375596 | None:intergenic | 30.0% |
| !! | GATGAAAGGTATTACAAAAG+GGG | + | chr3.2:42375366-42375385 | MS.gene30094:CDS | 30.0% |
| !! | TTATTGGCTCAAGATTATGA+AGG | + | chr3.2:42375510-42375529 | MS.gene30094:CDS | 30.0% |
| !!! | AGTAATCTTGTTTTCTAGTG+AGG | + | chr3.2:42375017-42375036 | MS.gene30094:CDS | 30.0% |
| !!! | GTAATCTTGTTTTCTAGTGA+GGG | + | chr3.2:42375018-42375037 | MS.gene30094:CDS | 30.0% |
| !!! | TCACAATAGTGCAAGTTTTT+TGG | - | chr3.2:42375252-42375271 | None:intergenic | 30.0% |
| AGTGAAAGCAAATGTTGTGA+GGG | - | chr3.2:42374693-42374712 | None:intergenic | 35.0% | |
| CAAGATTATGAAGGATGTGA+AGG | + | chr3.2:42375519-42375538 | MS.gene30094:CDS | 35.0% | |
| CTTCTTGTTCTAATAAAGGC+TGG | + | chr3.2:42374788-42374807 | MS.gene30094:CDS | 35.0% | |
| GACAAGAAAATGTTGTCAAC+AGG | - | chr3.2:42375612-42375631 | None:intergenic | 35.0% | |
| GCCATAAACTACAAATACTG+CGG | - | chr3.2:42374645-42374664 | None:intergenic | 35.0% | |
| GCTACATGATGAAACAAAGT+TGG | - | chr3.2:42375639-42375658 | None:intergenic | 35.0% | |
| GTGATGAAAATAGGCATACA+AGG | + | chr3.2:42375268-42375287 | MS.gene30094:CDS | 35.0% | |
| TAATAAGAGACTCCGAATTG+AGG | + | chr3.2:42374870-42374889 | MS.gene30094:CDS | 35.0% | |
| TAGTGAAAGCAAATGTTGTG+AGG | - | chr3.2:42374694-42374713 | None:intergenic | 35.0% | |
| TCCGCAGTATTTGTAGTTTA+TGG | + | chr3.2:42374641-42374660 | MS.gene30094:CDS | 35.0% | |
| TGAAAACTGAACCAACTTCA+AGG | - | chr3.2:42375229-42375248 | None:intergenic | 35.0% | |
| TTGATCAAGAATGGGGTAAA+TGG | + | chr3.2:42375427-42375446 | MS.gene30094:CDS | 35.0% | |
| ! | ATCAAAATAGAGGATGATGG+TGG | + | chr3.2:42375111-42375130 | MS.gene30094:CDS | 35.0% |
| ! | GAGTTGATTGTTTCCAACAT+TGG | + | chr3.2:42375075-42375094 | MS.gene30094:CDS | 35.0% |
| ! | GTATGATGGAAGTCTATATG+TGG | + | chr3.2:42375326-42375345 | MS.gene30094:CDS | 35.0% |
| !! | TTTGATGAACTTTCGAGTTG+TGG | + | chr3.2:42374915-42374934 | MS.gene30094:CDS | 35.0% |
| !!! | GGTGATGCTTCTTTTGTTTT+GGG | + | chr3.2:42375468-42375487 | MS.gene30094:CDS | 35.0% |
| ATCCAAGAGATGGAATTTGG+AGG | - | chr3.2:42374842-42374861 | None:intergenic | 40.0% | |
| ATCCTCCAAATTCCATCTCT+TGG | + | chr3.2:42374837-42374856 | MS.gene30094:CDS | 40.0% | |
| ATTCAACCATCACCAGATTG+TGG | + | chr3.2:42374751-42374770 | MS.gene30094:CDS | 40.0% | |
| CAAAAGGGGTTACTTCTTGA+AGG | + | chr3.2:42375380-42375399 | MS.gene30094:CDS | 40.0% | |
| CAATGCTTTGTCCTTGAAGT+TGG | + | chr3.2:42375215-42375234 | MS.gene30094:CDS | 40.0% | |
| GACATCCAAGAGATGGAATT+TGG | - | chr3.2:42374845-42374864 | None:intergenic | 40.0% | |
| GTGAAAGCAAATGTTGTGAG+GGG | - | chr3.2:42374692-42374711 | None:intergenic | 40.0% | |
| GTTGTAGAAATGCCACAATC+TGG | - | chr3.2:42374766-42374785 | None:intergenic | 40.0% | |
| TAGTGAAGACATCCAAGAGA+TGG | - | chr3.2:42374852-42374871 | None:intergenic | 40.0% | |
| !! | CTTCTTGAAGGCTGTTTTAG+TGG | + | chr3.2:42375392-42375411 | MS.gene30094:CDS | 40.0% |
| !! | GGGTGATGCTTCTTTTGTTT+TGG | + | chr3.2:42375467-42375486 | MS.gene30094:CDS | 40.0% |
| AAGCAAATGTTGTGAGGGGT+AGG | - | chr3.2:42374688-42374707 | None:intergenic | 45.0% | |
| GAAATGCCACAATCTGGTGA+TGG | - | chr3.2:42374760-42374779 | None:intergenic | 45.0% | |
| TTCTAGTGAGGGTCGTTGTA+TGG | + | chr3.2:42375029-42375048 | MS.gene30094:CDS | 45.0% | |
| CAAATGTTGTGAGGGGTAGG+TGG | - | chr3.2:42374685-42374704 | None:intergenic | 50.0% | |
| ATGTTGTGAGGGGTAGGTGG+AGG | - | chr3.2:42374682-42374701 | None:intergenic | 55.0% | |
| TTGTGAGGGGTAGGTGGAGG+AGG | - | chr3.2:42374679-42374698 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 42374544 | 42375665 | 42374544 | ID=MS.gene30094 |
| chr3.2 | mRNA | 42374544 | 42375665 | 42374544 | ID=MS.gene30094.t1;Parent=MS.gene30094 |
| chr3.2 | exon | 42374544 | 42375665 | 42374544 | ID=MS.gene30094.t1.exon1;Parent=MS.gene30094.t1 |
| chr3.2 | CDS | 42374544 | 42375665 | 42374544 | ID=cds.MS.gene30094.t1;Parent=MS.gene30094.t1 |
| Gene Sequence |
| Protein sequence |
