Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013533.t1 | AES72571.2 | 98.4 | 364 | 5 | 1 | 1 | 364 | 1 | 363 | 2.90E-206 | 727.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013533.t1 | Q56Y42 | 76.4 | 352 | 79 | 1 | 13 | 364 | 17 | 364 | 1.8e-161 | 570.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013533.t1 | G7J873 | 98.4 | 364 | 5 | 1 | 1 | 364 | 1 | 363 | 2.1e-206 | 727.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene22221 | MS.gene013533 | PPI |
| MS.gene93602 | MS.gene013533 | PPI |
| MS.gene93600 | MS.gene013533 | PPI |
| MS.gene31081 | MS.gene013533 | PPI |
| MS.gene022150 | MS.gene013533 | PPI |
| MS.gene93623 | MS.gene013533 | PPI |
| MS.gene062500 | MS.gene013533 | PPI |
| MS.gene53676 | MS.gene013533 | PPI |
| MS.gene061628 | MS.gene013533 | PPI |
| MS.gene46955 | MS.gene013533 | PPI |
| MS.gene23855 | MS.gene013533 | PPI |
| MS.gene022151 | MS.gene013533 | PPI |
| MS.gene45561 | MS.gene013533 | PPI |
| MS.gene56146 | MS.gene013533 | PPI |
| MS.gene022153 | MS.gene013533 | PPI |
| MS.gene052044 | MS.gene013533 | PPI |
| MS.gene23854 | MS.gene013533 | PPI |
| MS.gene43134 | MS.gene013533 | PPI |
| MS.gene43136 | MS.gene013533 | PPI |
| MS.gene43135 | MS.gene013533 | PPI |
| MS.gene013533 | MS.gene93616 | PPI |
| MS.gene96904 | MS.gene013533 | PPI |
| MS.gene56144 | MS.gene013533 | PPI |
| MS.gene93601 | MS.gene013533 | PPI |
| MS.gene43133 | MS.gene013533 | PPI |
| MS.gene78373 | MS.gene013533 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013533.t1 | MTR_3g092140 | 98.352 | 364 | 5 | 1 | 1 | 364 | 1 | 363 | 0.0 | 735 |
| MS.gene013533.t1 | MTR_3g092140 | 63.636 | 66 | 12 | 1 | 311 | 364 | 445 | 510 | 3.65e-15 | 77.0 |
| MS.gene013533.t1 | MTR_3g449790 | 40.979 | 327 | 179 | 7 | 35 | 352 | 33 | 354 | 8.07e-78 | 244 |
| MS.gene013533.t1 | MTR_3g449790 | 40.367 | 327 | 175 | 7 | 35 | 352 | 33 | 348 | 2.99e-77 | 242 |
| MS.gene013533.t1 | MTR_7g114990 | 26.176 | 340 | 208 | 12 | 33 | 352 | 4 | 320 | 1.71e-26 | 108 |
| MS.gene013533.t1 | MTR_7g114980 | 28.615 | 325 | 190 | 11 | 45 | 350 | 21 | 322 | 7.60e-26 | 107 |
| MS.gene013533.t1 | MTR_7g115010 | 29.032 | 310 | 177 | 13 | 47 | 346 | 21 | 297 | 3.00e-25 | 105 |
| MS.gene013533.t1 | MTR_1g102750 | 27.761 | 335 | 197 | 14 | 36 | 350 | 4 | 313 | 1.04e-24 | 103 |
| MS.gene013533.t1 | MTR_7g021850 | 28.523 | 298 | 170 | 12 | 72 | 350 | 38 | 311 | 1.32e-24 | 103 |
| MS.gene013533.t1 | MTR_7g021680 | 27.703 | 296 | 174 | 12 | 72 | 350 | 38 | 310 | 3.47e-22 | 96.7 |
| MS.gene013533.t1 | MTR_7g021820 | 27.703 | 296 | 174 | 12 | 72 | 350 | 38 | 310 | 3.47e-22 | 96.7 |
| MS.gene013533.t1 | MTR_7g114970 | 25.526 | 333 | 201 | 14 | 39 | 350 | 9 | 315 | 3.22e-21 | 94.0 |
| MS.gene013533.t1 | MTR_7g114980 | 28.136 | 295 | 170 | 11 | 45 | 320 | 21 | 292 | 6.48e-20 | 89.4 |
| MS.gene013533.t1 | MTR_1g102750 | 27.869 | 305 | 175 | 14 | 36 | 320 | 4 | 283 | 3.40e-19 | 87.4 |
| MS.gene013533.t1 | MTR_6g073110 | 25.424 | 295 | 171 | 8 | 72 | 351 | 34 | 294 | 1.57e-17 | 82.8 |
| MS.gene013533.t1 | MTR_1g042730 | 25.000 | 360 | 202 | 12 | 16 | 334 | 57 | 389 | 1.71e-17 | 84.0 |
| MS.gene013533.t1 | MTR_4g072320 | 25.723 | 311 | 174 | 11 | 74 | 366 | 30 | 301 | 9.42e-17 | 80.5 |
| MS.gene013533.t1 | MTR_8g088160 | 29.963 | 267 | 140 | 11 | 45 | 278 | 49 | 301 | 1.45e-16 | 80.1 |
| MS.gene013533.t1 | MTR_7g114970 | 25.083 | 303 | 180 | 14 | 39 | 320 | 9 | 285 | 5.99e-15 | 75.1 |
| MS.gene013533.t1 | MTR_4g072350 | 23.810 | 315 | 182 | 11 | 73 | 369 | 35 | 309 | 2.40e-14 | 73.6 |
| MS.gene013533.t1 | MTR_7g114970 | 24.834 | 302 | 180 | 14 | 39 | 319 | 9 | 284 | 4.11e-14 | 72.4 |
| MS.gene013533.t1 | MTR_7g114970 | 25.000 | 224 | 144 | 8 | 138 | 350 | 11 | 221 | 7.57e-14 | 71.2 |
| MS.gene013533.t1 | MTR_7g070500 | 22.989 | 348 | 196 | 10 | 46 | 375 | 22 | 315 | 1.78e-13 | 70.9 |
| MS.gene013533.t1 | MTR_7g114970 | 26.667 | 180 | 111 | 6 | 182 | 350 | 4 | 173 | 6.08e-13 | 67.4 |
| MS.gene013533.t1 | MTR_4g021350 | 29.570 | 186 | 101 | 6 | 177 | 362 | 138 | 293 | 1.25e-12 | 68.6 |
| MS.gene013533.t1 | MTR_4g021350 | 30.508 | 177 | 96 | 5 | 177 | 353 | 138 | 287 | 1.59e-12 | 67.8 |
| MS.gene013533.t1 | MTR_3g083130 | 23.569 | 297 | 170 | 11 | 80 | 359 | 45 | 301 | 3.27e-12 | 67.0 |
| MS.gene013533.t1 | MTR_7g070500 | 22.910 | 323 | 181 | 8 | 46 | 352 | 22 | 292 | 5.36e-12 | 66.2 |
| MS.gene013533.t1 | MTR_0374s0050 | 23.793 | 290 | 166 | 9 | 80 | 351 | 45 | 297 | 9.88e-12 | 65.9 |
| MS.gene013533.t1 | MTR_4g092750 | 25.581 | 301 | 181 | 14 | 45 | 333 | 11 | 280 | 1.08e-11 | 65.5 |
| MS.gene013533.t1 | MTR_4g072060 | 23.509 | 285 | 164 | 9 | 80 | 343 | 33 | 284 | 1.96e-11 | 64.7 |
| MS.gene013533.t1 | MTR_2g085125 | 23.577 | 246 | 159 | 8 | 82 | 311 | 91 | 323 | 2.19e-11 | 65.1 |
| MS.gene013533.t1 | MTR_8g070095 | 24.179 | 335 | 185 | 14 | 47 | 362 | 16 | 300 | 6.44e-11 | 63.2 |
| MS.gene013533.t1 | MTR_4g021410 | 26.984 | 189 | 109 | 5 | 177 | 365 | 56 | 215 | 8.87e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013533.t1 | AT5G53580 | 74.317 | 366 | 88 | 3 | 1 | 364 | 3 | 364 | 0.0 | 572 |
| MS.gene013533.t1 | AT1G06690 | 39.528 | 339 | 179 | 8 | 29 | 352 | 38 | 365 | 8.61e-78 | 244 |
| MS.gene013533.t1 | AT1G60680 | 27.528 | 356 | 210 | 16 | 38 | 369 | 8 | 339 | 7.25e-24 | 101 |
| MS.gene013533.t1 | AT1G60710 | 28.614 | 332 | 195 | 15 | 38 | 351 | 8 | 315 | 4.69e-23 | 99.0 |
| MS.gene013533.t1 | AT1G10810 | 28.440 | 327 | 194 | 16 | 38 | 347 | 8 | 311 | 8.48e-22 | 95.5 |
| MS.gene013533.t1 | AT1G60750 | 27.795 | 331 | 193 | 15 | 33 | 351 | 4 | 300 | 1.72e-21 | 94.4 |
| MS.gene013533.t1 | AT1G04690 | 26.979 | 341 | 210 | 15 | 36 | 356 | 2 | 323 | 2.76e-21 | 94.0 |
| MS.gene013533.t1 | AT1G60690 | 27.219 | 338 | 200 | 16 | 34 | 351 | 4 | 315 | 2.06e-20 | 91.7 |
| MS.gene013533.t1 | AT1G60730 | 26.807 | 332 | 201 | 15 | 38 | 351 | 8 | 315 | 1.46e-19 | 89.4 |
| MS.gene013533.t1 | AT1G04420 | 25.641 | 312 | 169 | 13 | 5 | 266 | 9 | 307 | 4.73e-15 | 76.6 |
| MS.gene013533.t1 | AT1G10810 | 27.826 | 230 | 137 | 10 | 38 | 259 | 8 | 216 | 1.53e-14 | 73.2 |
| MS.gene013533.t1 | AT2G27680 | 27.500 | 240 | 154 | 9 | 39 | 273 | 48 | 272 | 4.00e-13 | 70.5 |
| MS.gene013533.t1 | AT2G37760 | 23.826 | 298 | 179 | 11 | 80 | 364 | 34 | 296 | 5.71e-13 | 69.3 |
| MS.gene013533.t1 | AT2G37760 | 23.826 | 298 | 179 | 11 | 80 | 364 | 34 | 296 | 5.71e-13 | 69.3 |
| MS.gene013533.t1 | AT2G37770 | 25.092 | 271 | 157 | 9 | 80 | 338 | 38 | 274 | 1.08e-12 | 68.6 |
| MS.gene013533.t1 | AT2G37760 | 23.958 | 288 | 171 | 11 | 77 | 351 | 31 | 283 | 1.38e-12 | 68.2 |
| MS.gene013533.t1 | AT2G37760 | 23.958 | 288 | 171 | 11 | 77 | 351 | 31 | 283 | 1.38e-12 | 68.2 |
| MS.gene013533.t1 | AT2G37760 | 23.958 | 288 | 171 | 11 | 77 | 351 | 31 | 283 | 1.52e-12 | 67.8 |
| MS.gene013533.t1 | AT5G01670 | 23.032 | 343 | 200 | 10 | 47 | 375 | 24 | 316 | 1.84e-12 | 68.2 |
| MS.gene013533.t1 | AT2G37760 | 23.297 | 279 | 167 | 10 | 98 | 364 | 7 | 250 | 1.99e-11 | 64.3 |
| MS.gene013533.t1 | AT2G37760 | 23.297 | 279 | 167 | 10 | 98 | 364 | 7 | 250 | 1.99e-11 | 64.3 |
| MS.gene013533.t1 | AT2G21250 | 21.429 | 294 | 159 | 8 | 80 | 343 | 33 | 284 | 3.88e-11 | 63.9 |
| MS.gene013533.t1 | AT1G59950 | 23.438 | 320 | 190 | 10 | 73 | 375 | 33 | 314 | 5.35e-11 | 63.5 |
Find 93 sgRNAs with CRISPR-Local
Find 287 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATCTTGAGCTTCTGGTTT+TGG | 0.082289 | 3.4:+84328213 | None:intergenic |
| CATGGGGTAATCAGCTTCTT+TGG | 0.155060 | 3.4:-84328151 | MS.gene013533:CDS |
| ATGGGGTAATCAGCTTCTTT+GGG | 0.218078 | 3.4:-84328150 | MS.gene013533:CDS |
| AACACAAGCAGAGGAAAATT+TGG | 0.222359 | 3.4:-84324685 | MS.gene013533:CDS |
| GAGGCCCCATCTTGAGCTTC+TGG | 0.254268 | 3.4:+84328207 | None:intergenic |
| CCTTGGTCCAGTTGGAAGTT+TGG | 0.261270 | 3.4:+84326314 | None:intergenic |
| TTTGATACTGCTGATTCTTA+TGG | 0.261312 | 3.4:-84328056 | MS.gene013533:CDS |
| ATGCACTTCCTCAGAGAAAA+AGG | 0.266564 | 3.4:-84327469 | MS.gene013533:intron |
| TATGGTACTGGAAGGCTTAA+TGG | 0.272586 | 3.4:-84328038 | MS.gene013533:CDS |
| CAGTCTGCAACTTGTGCTGC+TGG | 0.289543 | 3.4:+84324441 | None:intergenic |
| CTAGGACTTGGAATGCTTAC+TGG | 0.291744 | 3.4:-84326351 | MS.gene013533:CDS |
| TTGGGGCTATCAAGAATCTA+TGG | 0.317047 | 3.4:-84328132 | MS.gene013533:CDS |
| CAAGAGTATATGTGATTCTC+TGG | 0.332996 | 3.4:-84326400 | MS.gene013533:CDS |
| CTATTTAAGCAAATACTTCC+AGG | 0.333869 | 3.4:-84326176 | MS.gene013533:CDS |
| GGTCAGAGTGAGAAACTTCT+TGG | 0.342488 | 3.4:-84328017 | MS.gene013533:CDS |
| AGAGGAAAATTTGGGTGCTC+TGG | 0.361866 | 3.4:-84324676 | MS.gene013533:CDS |
| GGCAGTTTGTCGATGCTTGC+AGG | 0.365238 | 3.4:-84327383 | MS.gene013533:intron |
| AGTGTGTCTCCAATGGGTTT+TGG | 0.366328 | 3.4:-84328182 | MS.gene013533:CDS |
| GCCTCTCAGTGTGTCTCCAA+TGG | 0.369900 | 3.4:-84328189 | MS.gene013533:CDS |
| ATTGACTTGACTCCAGGAAT+TGG | 0.370976 | 3.4:+84324708 | None:intergenic |
| TTATCCATGGCGCCTTACAC+CGG | 0.374534 | 3.4:-84327406 | MS.gene013533:CDS |
| TGTATCTTCAAAAGCTGCTT+TGG | 0.383259 | 3.4:+84326885 | None:intergenic |
| TATGTCAGGTTGCAATAAAT+TGG | 0.388740 | 3.4:-84324752 | MS.gene013533:intron |
| AGGATGCAGATAGAGCAAAT+TGG | 0.394502 | 3.4:-84327187 | MS.gene013533:CDS |
| TCTCTCAGGGAACTCAATAA+AGG | 0.394660 | 3.4:+84326146 | None:intergenic |
| GCTGTTGGAGTAAGTAATTA+TGG | 0.402781 | 3.4:-84326909 | MS.gene013533:CDS |
| AGCTCTTTGGGATGGTTTAG+TGG | 0.402880 | 3.4:-84327113 | MS.gene013533:CDS |
| TTGCAATCACAATTTCATTC+CGG | 0.403716 | 3.4:+84327442 | None:intergenic |
| AGTCTGCAACTTGTGCTGCT+GGG | 0.426650 | 3.4:+84324442 | None:intergenic |
| CCTCTCAGTGTGTCTCCAAT+GGG | 0.426743 | 3.4:-84328188 | MS.gene013533:CDS |
| CTTTCAGGGCATCACTAGAT+AGG | 0.427874 | 3.4:-84327207 | MS.gene013533:intron |
| GGATGCAGATAGAGCAAATT+GGG | 0.429103 | 3.4:-84327186 | MS.gene013533:CDS |
| AAAGGTACAATTCCAATTCC+TGG | 0.430013 | 3.4:-84324720 | MS.gene013533:CDS |
| TATCCATGGCGCCTTACACC+GGG | 0.443229 | 3.4:-84327405 | MS.gene013533:CDS |
| CGACAAACTGCCCCGGTGTA+AGG | 0.445202 | 3.4:+84327394 | None:intergenic |
| CAAAGAGCTAATTCTTGAAA+AGG | 0.445627 | 3.4:+84327127 | None:intergenic |
| TTTAGTGGCAATGTATGATA+AGG | 0.450190 | 3.4:-84327098 | MS.gene013533:intron |
| ACACAAGCAGAGGAAAATTT+GGG | 0.461452 | 3.4:-84324684 | MS.gene013533:CDS |
| CAACTGAAGTAGCTCGTTTG+AGG | 0.463411 | 3.4:+84324641 | None:intergenic |
| GCTTATAGTCCTCTAGGACT+TGG | 0.463947 | 3.4:-84326363 | MS.gene013533:CDS |
| CAAAACCAGAAGCTCAAGAT+GGG | 0.467300 | 3.4:-84328212 | MS.gene013533:CDS |
| CAAAATTTGCTGCTTATCCA+TGG | 0.468933 | 3.4:-84327419 | MS.gene013533:CDS |
| ACTGCTGATTCTTATGGTAC+TGG | 0.471003 | 3.4:-84328050 | MS.gene013533:CDS |
| TGTGTTATTGACTTGACTCC+AGG | 0.471797 | 3.4:+84324702 | None:intergenic |
| CAGGGTTTAGTTCAAGCTGT+TGG | 0.471881 | 3.4:-84326924 | MS.gene013533:CDS |
| CTTTCAAATTCCCTTCCCTA+TGG | 0.474412 | 3.4:-84328247 | MS.gene013533:CDS |
| TCAGCATCCAAACTTCCAAC+TGG | 0.478271 | 3.4:-84326321 | MS.gene013533:CDS |
| CCAAAACCAGAAGCTCAAGA+TGG | 0.478838 | 3.4:-84328213 | MS.gene013533:CDS |
| CTCAATAAAGGATCCAGTCC+TGG | 0.487530 | 3.4:+84326158 | None:intergenic |
| CAGCACAGCAATCGCCTCGC+AGG | 0.488464 | 3.4:-84324611 | MS.gene013533:CDS |
| GAGGAAAATTTGGGTGCTCT+GGG | 0.495873 | 3.4:-84324675 | MS.gene013533:CDS |
| CTCAAACGAGCTACTTCAGT+TGG | 0.502646 | 3.4:-84324640 | MS.gene013533:CDS |
| TTTGGGTGGATGATGGCCAT+AGG | 0.506984 | 3.4:+84328231 | None:intergenic |
| TAAGCAAATACTTCCAGGAC+TGG | 0.510322 | 3.4:-84326171 | MS.gene013533:CDS |
| AAAATTTGGGTGCTCTGGGT+TGG | 0.513121 | 3.4:-84324671 | MS.gene013533:CDS |
| GTCTGCAACTTGTGCTGCTG+GGG | 0.518695 | 3.4:+84324443 | None:intergenic |
| GTAATTGCTTATAGTCCTCT+AGG | 0.521768 | 3.4:-84326369 | MS.gene013533:CDS |
| TTTATTTGCAATATCTCTCA+GGG | 0.524302 | 3.4:+84326133 | None:intergenic |
| TTTGAAAGGAAACGATGGTA+AGG | 0.524982 | 3.4:+84328262 | None:intergenic |
| TAGGACTTGGAATGCTTACT+GGG | 0.528436 | 3.4:-84326350 | MS.gene013533:CDS |
| GTCAGAGTGAGAAACTTCTT+GGG | 0.529492 | 3.4:-84328016 | MS.gene013533:CDS |
| TGGGGTAATCAGCTTCTTTG+GGG | 0.531621 | 3.4:-84328149 | MS.gene013533:CDS |
| GTGGATGATGGCCATAGGGA+AGG | 0.533632 | 3.4:+84328236 | None:intergenic |
| TTGGGTGGATGATGGCCATA+GGG | 0.533850 | 3.4:+84328232 | None:intergenic |
| TTTAACATGGCTGTTGAGAA+TGG | 0.534752 | 3.4:-84328089 | MS.gene013533:CDS |
| TGGATGATGGCCATAGGGAA+GGG | 0.537699 | 3.4:+84328237 | None:intergenic |
| CAGATAGAGCAAATTGGGAT+AGG | 0.547847 | 3.4:-84327181 | MS.gene013533:CDS |
| CAAGAATTAGCTCTTTGGGA+TGG | 0.548031 | 3.4:-84327121 | MS.gene013533:CDS |
| TTGGGATAGGACAACTGCAT+TGG | 0.550671 | 3.4:-84327168 | MS.gene013533:CDS |
| TTGAAAGGAAACGATGGTAA+GGG | 0.554712 | 3.4:+84328263 | None:intergenic |
| TGCCCCGGTGTAAGGCGCCA+TGG | 0.557026 | 3.4:+84327402 | None:intergenic |
| TGAAAGGAAACGATGGTAAG+GGG | 0.563502 | 3.4:+84328264 | None:intergenic |
| AAACGAGCTACTTCAGTTGG+AGG | 0.564890 | 3.4:-84324637 | MS.gene013533:CDS |
| GCCCAAGTTCCAAAACCCAT+TGG | 0.565398 | 3.4:+84328173 | None:intergenic |
| TCAACACACCTTGGTCCAGT+TGG | 0.576474 | 3.4:+84326306 | None:intergenic |
| CATAGGGAAGGGAATTTGAA+AGG | 0.580453 | 3.4:+84328248 | None:intergenic |
| TCTACCTGGGCTGAGCATAA+CGG | 0.585242 | 3.4:+84326837 | None:intergenic |
| CAAGCATCGACAAACTGCCC+CGG | 0.589208 | 3.4:+84327387 | None:intergenic |
| ATAAATTGGTGCATATGCAA+AGG | 0.597596 | 3.4:-84324738 | MS.gene013533:CDS |
| AAGACGCAAAACCATGTCAC+AGG | 0.598290 | 3.4:-84326111 | MS.gene013533:intron |
| CAAGTCAATAACACAAGCAG+AGG | 0.602257 | 3.4:-84324694 | MS.gene013533:CDS |
| CTGATTCTTATGGTACTGGA+AGG | 0.608649 | 3.4:-84328046 | MS.gene013533:CDS |
| AAGAGTATATGTGATTCTCT+GGG | 0.616987 | 3.4:-84326399 | MS.gene013533:CDS |
| GGGAATTTGAAAGGAAACGA+TGG | 0.617876 | 3.4:+84328257 | None:intergenic |
| CCTTCAGCAAGTGTTTAACA+TGG | 0.622260 | 3.4:-84328102 | MS.gene013533:CDS |
| AGTTCCGTTATGCTCAGCCC+AGG | 0.622502 | 3.4:-84326841 | MS.gene013533:intron |
| ATCCATGGCGCCTTACACCG+GGG | 0.629680 | 3.4:-84327404 | MS.gene013533:CDS |
| CCATGTTAAACACTTGCTGA+AGG | 0.643305 | 3.4:+84328102 | None:intergenic |
| CCAAACTTCCAACTGGACCA+AGG | 0.674362 | 3.4:-84326314 | MS.gene013533:intron |
| CTGAGCATAACGGAACTCCA+CGG | 0.675511 | 3.4:+84326847 | None:intergenic |
| AAAACCAGAAGCTCAAGATG+GGG | 0.683749 | 3.4:-84328211 | MS.gene013533:CDS |
| CCCATTGGAGACACACTGAG+AGG | 0.699929 | 3.4:+84328188 | None:intergenic |
| GTAAGCATTCCAAGTCCTAG+AGG | 0.710131 | 3.4:+84326354 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTGTTAAAATGATTAA+TGG | + | chr3.4:84326283-84326302 | None:intergenic | 10.0% |
| !! | ATAATAGATTATTCAATTAA+AGG | - | chr3.4:84327446-84327465 | MS.gene013533:CDS | 10.0% |
| !!! | TTTATGTCTTTATTTTATAT+TGG | - | chr3.4:84325806-84325825 | MS.gene013533:intron | 10.0% |
| !! | AATAATTCATGTTTAATACT+AGG | - | chr3.4:84325686-84325705 | MS.gene013533:intron | 15.0% |
| !! | GTTAAATTATACCAAATTAA+AGG | + | chr3.4:84324808-84324827 | None:intergenic | 15.0% |
| !! | TACATTTAACATTGATAAAA+AGG | + | chr3.4:84324853-84324872 | None:intergenic | 15.0% |
| !!! | ATATTTAGAACATTATTAAG+TGG | - | chr3.4:84326485-84326504 | MS.gene013533:intron | 15.0% |
| !!! | TTTAACAATTTTAACATTTC+AGG | - | chr3.4:84326291-84326310 | MS.gene013533:intron | 15.0% |
| !!! | TTTTTAAAGGTTTTAAACTT+GGG | - | chr3.4:84327644-84327663 | MS.gene013533:intron | 15.0% |
| !!! | TTTTTTAAAGGTTTTAAACT+TGG | - | chr3.4:84327643-84327662 | MS.gene013533:intron | 15.0% |
| !! | AACAAAAAAGGAAAATGATA+AGG | - | chr3.4:84326069-84326088 | MS.gene013533:intron | 20.0% |
| !! | AGACAATGAATTTATTTGAT+CGG | + | chr3.4:84327970-84327989 | None:intergenic | 20.0% |
| !! | AGTAAAGCAAATATTTGTAA+TGG | + | chr3.4:84325495-84325514 | None:intergenic | 20.0% |
| !! | GGAAAATAAAATCTACAAAA+TGG | + | chr3.4:84327117-84327136 | None:intergenic | 20.0% |
| !! | TAATTCCACATTAGATAAAA+TGG | + | chr3.4:84327019-84327038 | None:intergenic | 20.0% |
| !! | TTAAGAAACTACAACAAAAA+AGG | - | chr3.4:84326057-84326076 | MS.gene013533:intron | 20.0% |
| !! | TTATCCAGTTTATCAATTAT+AGG | - | chr3.4:84328204-84328223 | MS.gene013533:CDS | 20.0% |
| !! | TTGATTAATGTGAAAATTAC+AGG | + | chr3.4:84327177-84327196 | None:intergenic | 20.0% |
| !! | TTTATTAACCTTGAAATATC+TGG | + | chr3.4:84328230-84328249 | None:intergenic | 20.0% |
| !!! | AACACAACTTACTTTTTTAA+AGG | - | chr3.4:84327631-84327650 | MS.gene013533:intron | 20.0% |
| !!! | ATCATACTTTTCCTTTAATT+TGG | - | chr3.4:84324794-84324813 | MS.gene013533:intron | 20.0% |
| !!! | TAACATTCAAATTTTGCTTT+TGG | - | chr3.4:84325965-84325984 | MS.gene013533:intron | 20.0% |
| !!! | TGATTTGCAATTAATAACAA+AGG | + | chr3.4:84326551-84326570 | None:intergenic | 20.0% |
| !!! | TGTTTTGATATAAGCTATTA+TGG | - | chr3.4:84325095-84325114 | MS.gene013533:intron | 20.0% |
| !!! | TTAATCCATTTTATCTAATG+TGG | - | chr3.4:84327011-84327030 | MS.gene013533:intron | 20.0% |
| !!! | TTAGCATCATTAACTTTTTT+TGG | - | chr3.4:84326521-84326540 | MS.gene013533:intron | 20.0% |
| !!! | TTTTTTGTTGTAGTTTCTTA+AGG | + | chr3.4:84326058-84326077 | None:intergenic | 20.0% |
| ! | AAATATTAGTGTGATGAAAG+AGG | - | chr3.4:84324872-84324891 | MS.gene013533:intron | 25.0% |
| ! | AAATGCCAATATTAAAAACC+CGG | - | chr3.4:84327374-84327393 | MS.gene013533:intron | 25.0% |
| ! | AATAAGCTTAAAACAACTCA+AGG | - | chr3.4:84325129-84325148 | MS.gene013533:intron | 25.0% |
| ! | AGTGAATGAATTGACATTTA+AGG | + | chr3.4:84327592-84327611 | None:intergenic | 25.0% |
| ! | ATAATGACAGCATAATTTGA+AGG | + | chr3.4:84326218-84326237 | None:intergenic | 25.0% |
| ! | ATTTATACACAAAACGCTAA+AGG | + | chr3.4:84326721-84326740 | None:intergenic | 25.0% |
| ! | GACAATGAATTTATTTGATC+GGG | + | chr3.4:84327969-84327988 | None:intergenic | 25.0% |
| ! | GATTAAAAGAAAGATACGTA+TGG | + | chr3.4:84326997-84327016 | None:intergenic | 25.0% |
| ! | GTTATTAATTGCAAATCACA+GGG | - | chr3.4:84326553-84326572 | MS.gene013533:intron | 25.0% |
| ! | TAAAAAAGAACGAAAGTAGT+AGG | + | chr3.4:84326692-84326711 | None:intergenic | 25.0% |
| ! | TAATATCATTCAGTCAGAAT+AGG | + | chr3.4:84325423-84325442 | None:intergenic | 25.0% |
| ! | TAGTCACTAATGAGATTAAA+AGG | + | chr3.4:84325998-84326017 | None:intergenic | 25.0% |
| ! | TGTTATTAATTGCAAATCAC+AGG | - | chr3.4:84326552-84326571 | MS.gene013533:intron | 25.0% |
| ! | TTATTAATTGCAAATCACAG+GGG | - | chr3.4:84326554-84326573 | MS.gene013533:intron | 25.0% |
| ! | TTGAATGAAATGAACTTTCA+GGG | - | chr3.4:84325536-84325555 | MS.gene013533:intron | 25.0% |
| ! | TTTAATACTAGGATCACATT+AGG | - | chr3.4:84325697-84325716 | MS.gene013533:intron | 25.0% |
| ! | TTTATACACAAAACGCTAAA+GGG | + | chr3.4:84326720-84326739 | None:intergenic | 25.0% |
| ! | TTTATTTGCAATATCTCTCA+GGG | + | chr3.4:84326627-84326646 | None:intergenic | 25.0% |
| !! | AACCATACTTTAAAGACATT+CGG | - | chr3.4:84325729-84325748 | MS.gene013533:intron | 25.0% |
| !! | AATGTGAAAATTACAGGTTT+TGG | + | chr3.4:84327171-84327190 | None:intergenic | 25.0% |
| !! | TCTTTAAAGGGAAGTTTAAA+GGG | + | chr3.4:84327864-84327883 | None:intergenic | 25.0% |
| !! | TTCATTTCATTCAAGTTCAA+TGG | + | chr3.4:84325530-84325549 | None:intergenic | 25.0% |
| !! | TTCTTTAAAGGGAAGTTTAA+AGG | + | chr3.4:84327865-84327884 | None:intergenic | 25.0% |
| !! | TTTAAAGTATGGTTCACTTA+AGG | + | chr3.4:84325723-84325742 | None:intergenic | 25.0% |
| !!! | AAGGCATTTTTTTTATCAGT+AGG | - | chr3.4:84326882-84326901 | MS.gene013533:CDS | 25.0% |
| !!! | ACCTGGTTTGAAAAATATTT+TGG | + | chr3.4:84328177-84328196 | None:intergenic | 25.0% |
| !!! | ATATGGATTATGGATTAGAT+TGG | - | chr3.4:84324906-84324925 | MS.gene013533:intron | 25.0% |
| !!! | TCCAAAATATTTTTCAAACC+AGG | - | chr3.4:84328173-84328192 | MS.gene013533:CDS | 25.0% |
| !!! | TTATTTTATATTGGCATCCA+GGG | - | chr3.4:84325815-84325834 | MS.gene013533:intron | 25.0% |
| !!! | TTTATTTTATATTGGCATCC+AGG | - | chr3.4:84325814-84325833 | MS.gene013533:intron | 25.0% |
| !!! | TTTTATTTGCAATATCTCTC+AGG | + | chr3.4:84326628-84326647 | None:intergenic | 25.0% |
| !!! | TTTTCAAGAATTAGCTCTTT+GGG | - | chr3.4:84325632-84325651 | MS.gene013533:intron | 25.0% |
| ACACCTTCATAAAAAGTAGT+TGG | - | chr3.4:84327679-84327698 | MS.gene013533:intron | 30.0% | |
| AGTAGTAGTGTACAAAAGAT+TGG | + | chr3.4:84327332-84327351 | None:intergenic | 30.0% | |
| ATAAAAGACACCTTCACAAA+AGG | - | chr3.4:84327823-84327842 | MS.gene013533:intron | 30.0% | |
| ATAAATTGGTGCATATGCAA+AGG | - | chr3.4:84328019-84328038 | MS.gene013533:CDS | 30.0% | |
| ATTATAGGCCAGATATTTCA+AGG | - | chr3.4:84328219-84328238 | MS.gene013533:CDS | 30.0% | |
| CAAAGAGCTAATTCTTGAAA+AGG | + | chr3.4:84325633-84325652 | None:intergenic | 30.0% | |
| CGAAAGTAGTAGGTAAAAAT+AGG | + | chr3.4:84326682-84326701 | None:intergenic | 30.0% | |
| CTATTTAAGCAAATACTTCC+AGG | - | chr3.4:84326581-84326600 | MS.gene013533:intron | 30.0% | |
| CTTGAATGAAATGAACTTTC+AGG | - | chr3.4:84325535-84325554 | MS.gene013533:intron | 30.0% | |
| TCATTAGTGACTAATAACCA+TGG | - | chr3.4:84326005-84326024 | MS.gene013533:intron | 30.0% | |
| TTATACACAAAACGCTAAAG+GGG | + | chr3.4:84326719-84326738 | None:intergenic | 30.0% | |
| TTGCAATCACAATTTCATTC+CGG | + | chr3.4:84325318-84325337 | None:intergenic | 30.0% | |
| TTTAGTGGCAATGTATGATA+AGG | - | chr3.4:84325659-84325678 | MS.gene013533:intron | 30.0% | |
| TTTGACTGTCAATTCATTTG+AGG | - | chr3.4:84326787-84326806 | MS.gene013533:intron | 30.0% | |
| ! | AAGAGTATATGTGATTCTCT+GGG | - | chr3.4:84326358-84326377 | MS.gene013533:CDS | 30.0% |
| ! | AATTTTCTTTGCTAAGCATG+GGG | - | chr3.4:84326317-84326336 | MS.gene013533:CDS | 30.0% |
| ! | ACCATACTTTAAAGACATTC+GGG | - | chr3.4:84325730-84325749 | MS.gene013533:intron | 30.0% |
| ! | AGAGATGATGATATGGATTA+TGG | - | chr3.4:84324896-84324915 | MS.gene013533:intron | 30.0% |
| ! | CAATTTTCTTTGCTAAGCAT+GGG | - | chr3.4:84326316-84326335 | MS.gene013533:CDS | 30.0% |
| ! | CACTTTTCTTTTAGTCATTC+TGG | + | chr3.4:84326192-84326211 | None:intergenic | 30.0% |
| ! | CATTTAAGGTTTGTCTTCTT+TGG | + | chr3.4:84327578-84327597 | None:intergenic | 30.0% |
| ! | GGGTTTTTAATATTGGCATT+TGG | + | chr3.4:84327375-84327394 | None:intergenic | 30.0% |
| ! | TATGTCAGGTTGCAATAAAT+TGG | - | chr3.4:84328005-84328024 | MS.gene013533:CDS | 30.0% |
| !! | CTTTTCAAGAATTAGCTCTT+TGG | - | chr3.4:84325631-84325650 | MS.gene013533:intron | 30.0% |
| !! | GAATAGTTCTGATGTTGTTA+CGG | + | chr3.4:84327531-84327550 | None:intergenic | 30.0% |
| !! | GATTATGGATTAGATTGGAT+TGG | - | chr3.4:84324911-84324930 | MS.gene013533:intron | 30.0% |
| !! | TTTGATACTGCTGATTCTTA+TGG | - | chr3.4:84324701-84324720 | MS.gene013533:CDS | 30.0% |
| !!! | ACACCAACTACTTTTTATGA+AGG | + | chr3.4:84327774-84327793 | None:intergenic | 30.0% |
| AAAGTGAAAATCACACCTTG+AGG | + | chr3.4:84327725-84327744 | None:intergenic | 35.0% | |
| AAATATGTTCCAAGCCTGAA+GGG | - | chr3.4:84326815-84326834 | MS.gene013533:intron | 35.0% | |
| AACAATAGTGCTAGTGAATG+GGG | - | chr3.4:84327059-84327078 | MS.gene013533:intron | 35.0% | |
| AACACAAGCAGAGGAAAATT+TGG | - | chr3.4:84328072-84328091 | MS.gene013533:CDS | 35.0% | |
| AACTGGATAACATGTATACC+TGG | + | chr3.4:84328194-84328213 | None:intergenic | 35.0% | |
| AAGAGGAAGAGATGATGATA+TGG | - | chr3.4:84324889-84324908 | MS.gene013533:intron | 35.0% | |
| AAGTTATGTTCTCCAGAAGA+TGG | + | chr3.4:84327254-84327273 | None:intergenic | 35.0% | |
| ACACAAGCAGAGGAAAATTT+GGG | - | chr3.4:84328073-84328092 | MS.gene013533:CDS | 35.0% | |
| ACTATTCCCACTTCATTATC+AGG | - | chr3.4:84327544-84327563 | MS.gene013533:intron | 35.0% | |
| AGACCAAGGCAATAAATGAA+CGG | + | chr3.4:84326248-84326267 | None:intergenic | 35.0% | |
| AGTCAGTAAGACATGTATGA+AGG | + | chr3.4:84324987-84325006 | None:intergenic | 35.0% | |
| AGTTATGTTCTCCAGAAGAT+GGG | + | chr3.4:84327253-84327272 | None:intergenic | 35.0% | |
| ATTATCAAGTTCTTCCTACG+CGG | - | chr3.4:84325465-84325484 | MS.gene013533:intron | 35.0% | |
| ATTATGCATTACACTCTACC+TGG | + | chr3.4:84325937-84325956 | None:intergenic | 35.0% | |
| CAACAATAGTGCTAGTGAAT+GGG | - | chr3.4:84327058-84327077 | MS.gene013533:intron | 35.0% | |
| CACCTTCATAAAAAGTAGTG+TGG | - | chr3.4:84327680-84327699 | MS.gene013533:intron | 35.0% | |
| CATGATTACTTGAAAAACCG+TGG | - | chr3.4:84325893-84325912 | MS.gene013533:intron | 35.0% | |
| CTAACTTGACAACTAAACCA+TGG | + | chr3.4:84326025-84326044 | None:intergenic | 35.0% | |
| CTCAGTTAGGGGATTTATAA+TGG | - | chr3.4:84324959-84324978 | MS.gene013533:intron | 35.0% | |
| CTGGCCTATAATTGATAAAC+TGG | + | chr3.4:84328211-84328230 | None:intergenic | 35.0% | |
| GAAAAAGATTACCTGTGACA+TGG | + | chr3.4:84326660-84326679 | None:intergenic | 35.0% | |
| GCTGTTGGAGTAAGTAATTA+TGG | - | chr3.4:84325848-84325867 | MS.gene013533:intron | 35.0% | |
| GTAATTGCTTATAGTCCTCT+AGG | - | chr3.4:84326388-84326407 | MS.gene013533:CDS | 35.0% | |
| TAAATATGTTCCAAGCCTGA+AGG | - | chr3.4:84326814-84326833 | MS.gene013533:intron | 35.0% | |
| TAAGAACTTGCGAAACTGTT+TGG | + | chr3.4:84325191-84325210 | None:intergenic | 35.0% | |
| TATCTTGCATGAGTGGTTTA+AGG | - | chr3.4:84326863-84326882 | MS.gene013533:CDS | 35.0% | |
| TCTAATAAGTCAGTCCAATC+AGG | - | chr3.4:84325226-84325245 | MS.gene013533:intron | 35.0% | |
| TCTCATTCAGAAACTCAATG+AGG | + | chr3.4:84326145-84326164 | None:intergenic | 35.0% | |
| TGAATTTATTTGATCGGGCA+AGG | + | chr3.4:84327964-84327983 | None:intergenic | 35.0% | |
| TGTATCTTCAAAAGCTGCTT+TGG | + | chr3.4:84325875-84325894 | None:intergenic | 35.0% | |
| TTAAGGTTTGTCTTCTTTGG+TGG | + | chr3.4:84327575-84327594 | None:intergenic | 35.0% | |
| TTATCAGTAGGAATCGTACT+TGG | - | chr3.4:84326894-84326913 | MS.gene013533:CDS | 35.0% | |
| TTATGCATTACACTCTACCT+GGG | + | chr3.4:84325936-84325955 | None:intergenic | 35.0% | |
| TTGAAAGGAAACGATGGTAA+GGG | + | chr3.4:84324497-84324516 | None:intergenic | 35.0% | |
| TTTAACATGGCTGTTGAGAA+TGG | - | chr3.4:84324668-84324687 | MS.gene013533:CDS | 35.0% | |
| TTTGAAAGGAAACGATGGTA+AGG | + | chr3.4:84324498-84324517 | None:intergenic | 35.0% | |
| ! | AAACTAAAACCAAGCTCTGA+TGG | - | chr3.4:84327406-84327425 | MS.gene013533:CDS | 35.0% |
| ! | AAAGGTACAATTCCAATTCC+TGG | - | chr3.4:84328037-84328056 | MS.gene013533:CDS | 35.0% |
| ! | AAGTTCATTCGAGATTTTCG+AGG | - | chr3.4:84324764-84324783 | MS.gene013533:intron | 35.0% |
| ! | AGATTGGATTGGAAAAGAGA+AGG | - | chr3.4:84324922-84324941 | MS.gene013533:intron | 35.0% |
| ! | ATAGAAGACACCTTTTGTGA+AGG | + | chr3.4:84327836-84327855 | None:intergenic | 35.0% |
| ! | ATTTTCTTTGCTAAGCATGG+GGG | - | chr3.4:84326318-84326337 | MS.gene013533:CDS | 35.0% |
| ! | CAAGAGTATATGTGATTCTC+TGG | - | chr3.4:84326357-84326376 | MS.gene013533:CDS | 35.0% |
| ! | CCATACTTTAAAGACATTCG+GGG | - | chr3.4:84325731-84325750 | MS.gene013533:intron | 35.0% |
| ! | CGTAGGAAGAACTTGATAAT+AGG | + | chr3.4:84325465-84325484 | None:intergenic | 35.0% |
| ! | GATGATCCTGATAATGAAGT+GGG | + | chr3.4:84327553-84327572 | None:intergenic | 35.0% |
| ! | GCAATTTTCTTTGCTAAGCA+TGG | - | chr3.4:84326315-84326334 | MS.gene013533:CDS | 35.0% |
| ! | TACATGTCTTACTGACTGTT+TGG | - | chr3.4:84324990-84325009 | MS.gene013533:intron | 35.0% |
| ! | TTGTGCCGGGTTTTTAATAT+TGG | + | chr3.4:84327382-84327401 | None:intergenic | 35.0% |
| ! | TTTTATCAAGTCACACCTCA+AGG | - | chr3.4:84327707-84327726 | MS.gene013533:intron | 35.0% |
| !! | CAAAATTTGCTGCTTATCCA+TGG | - | chr3.4:84325338-84325357 | MS.gene013533:intron | 35.0% |
| !! | CTGGTTGGTCTTTCTTTAAA+GGG | + | chr3.4:84327876-84327895 | None:intergenic | 35.0% |
| !! | TGTTTTCTCATTAGCCTGAT+TGG | + | chr3.4:84325243-84325262 | None:intergenic | 35.0% |
| !!! | CACCACACTACTTTTTATGA+AGG | + | chr3.4:84327685-84327704 | None:intergenic | 35.0% |
| !!! | GTTTTAGTTTTCTGTTGTGC+CGG | + | chr3.4:84327396-84327415 | None:intergenic | 35.0% |
| !!! | TTTTAGTTTTCTGTTGTGCC+GGG | + | chr3.4:84327395-84327414 | None:intergenic | 35.0% |
| AAAACCAGAAGCTCAAGATG+GGG | - | chr3.4:84324546-84324565 | MS.gene013533:intron | 40.0% | |
| AATATCACTCAGTTGCTCAG+AGG | - | chr3.4:84326738-84326757 | MS.gene013533:intron | 40.0% | |
| ACGCATCACATTGTTATGTC+AGG | - | chr3.4:84327991-84328010 | MS.gene013533:intron | 40.0% | |
| AGGATGCAGATAGAGCAAAT+TGG | - | chr3.4:84325570-84325589 | MS.gene013533:intron | 40.0% | |
| AGGCAATAAATGAACGGTTG+TGG | + | chr3.4:84326242-84326261 | None:intergenic | 40.0% | |
| AGGCGATATATAGCTCAGTT+AGG | - | chr3.4:84324946-84324965 | MS.gene013533:intron | 40.0% | |
| AGGCTATATGCTTCTTCCTT+CGG | - | chr3.4:84327297-84327316 | MS.gene013533:intron | 40.0% | |
| AGTGGTATATCTTGCATGAG+TGG | - | chr3.4:84326856-84326875 | MS.gene013533:CDS | 40.0% | |
| ATGCACTTCCTCAGAGAAAA+AGG | - | chr3.4:84325288-84325307 | MS.gene013533:intron | 40.0% | |
| ATGGGGTAATCAGCTTCTTT+GGG | - | chr3.4:84324607-84324626 | MS.gene013533:CDS | 40.0% | |
| CAAAACCAGAAGCTCAAGAT+GGG | - | chr3.4:84324545-84324564 | MS.gene013533:intron | 40.0% | |
| CAACCGTTCATTTATTGCCT+TGG | - | chr3.4:84326242-84326261 | MS.gene013533:intron | 40.0% | |
| CAAGTCAATAACACAAGCAG+AGG | - | chr3.4:84328063-84328082 | MS.gene013533:CDS | 40.0% | |
| CAGATAGAGCAAATTGGGAT+AGG | - | chr3.4:84325576-84325595 | MS.gene013533:intron | 40.0% | |
| CATAGGGAAGGGAATTTGAA+AGG | + | chr3.4:84324512-84324531 | None:intergenic | 40.0% | |
| CCAACAATAGTGCTAGTGAA+TGG | - | chr3.4:84327057-84327076 | MS.gene013533:intron | 40.0% | |
| CCATTCACTAGCACTATTGT+TGG | + | chr3.4:84327060-84327079 | None:intergenic | 40.0% | |
| CCTATTATGCTGTCATACTC+AGG | - | chr3.4:84327277-84327296 | MS.gene013533:intron | 40.0% | |
| CCTGAGTATGACAGCATAAT+AGG | + | chr3.4:84327280-84327299 | None:intergenic | 40.0% | |
| CCTTCAGCAAGTGTTTAACA+TGG | - | chr3.4:84324655-84324674 | MS.gene013533:CDS | 40.0% | |
| CTTTCAAATTCCCTTCCCTA+TGG | - | chr3.4:84324510-84324529 | MS.gene013533:intron | 40.0% | |
| GCGATATATAGCTCAGTTAG+GGG | - | chr3.4:84324948-84324967 | MS.gene013533:intron | 40.0% | |
| GCTCTTGTCAAATAAGTGTG+AGG | + | chr3.4:84327138-84327157 | None:intergenic | 40.0% | |
| GGATGCAGATAGAGCAAATT+GGG | - | chr3.4:84325571-84325590 | MS.gene013533:intron | 40.0% | |
| GGCGATATATAGCTCAGTTA+GGG | - | chr3.4:84324947-84324966 | MS.gene013533:intron | 40.0% | |
| GGGAATTTGAAAGGAAACGA+TGG | + | chr3.4:84324503-84324522 | None:intergenic | 40.0% | |
| GTCAGAGTGAGAAACTTCTT+GGG | - | chr3.4:84324741-84324760 | MS.gene013533:CDS | 40.0% | |
| TAAGCAAATACTTCCAGGAC+TGG | - | chr3.4:84326586-84326605 | MS.gene013533:intron | 40.0% | |
| TAGGACAAGGACAGTTATGT+GGG | + | chr3.4:84327899-84327918 | None:intergenic | 40.0% | |
| TAGGACTTGGAATGCTTACT+GGG | - | chr3.4:84326407-84326426 | MS.gene013533:CDS | 40.0% | |
| TCTCTCAGGGAACTCAATAA+AGG | + | chr3.4:84326614-84326633 | None:intergenic | 40.0% | |
| TGAAAGGAAACGATGGTAAG+GGG | + | chr3.4:84324496-84324515 | None:intergenic | 40.0% | |
| TGCACTTCCTCAGAGAAAAA+GGG | - | chr3.4:84325289-84325308 | MS.gene013533:intron | 40.0% | |
| TTGGGGCTATCAAGAATCTA+TGG | - | chr3.4:84324625-84324644 | MS.gene013533:CDS | 40.0% | |
| TTGTCAGTTGTAACACACCT+AGG | + | chr3.4:84327918-84327937 | None:intergenic | 40.0% | |
| TTTATTTGATCGGGCAAGGT+TGG | + | chr3.4:84327960-84327979 | None:intergenic | 40.0% | |
| TTTCTATGACCATCAGAGCT+TGG | + | chr3.4:84327418-84327437 | None:intergenic | 40.0% | |
| ! | CAAGAATTAGCTCTTTGGGA+TGG | - | chr3.4:84325636-84325655 | MS.gene013533:intron | 40.0% |
| ! | CATTTATTGCCTTGGTCTTC+TGG | - | chr3.4:84326250-84326269 | MS.gene013533:intron | 40.0% |
| ! | CCATGTTAAACACTTGCTGA+AGG | + | chr3.4:84324658-84324677 | None:intergenic | 40.0% |
| ! | CTGATTCTTATGGTACTGGA+AGG | - | chr3.4:84324711-84324730 | MS.gene013533:CDS | 40.0% |
| ! | GGATGATCCTGATAATGAAG+TGG | + | chr3.4:84327554-84327573 | None:intergenic | 40.0% |
| ! | TAGACTTCGGTAGTGGTTTA+AGG | - | chr3.4:84326965-84326984 | MS.gene013533:intron | 40.0% |
| ! | TATGGTACTGGAAGGCTTAA+TGG | - | chr3.4:84324719-84324738 | MS.gene013533:CDS | 40.0% |
| ! | TGGATTGGAAAAGAGAAGGA+AGG | - | chr3.4:84324926-84324945 | MS.gene013533:intron | 40.0% |
| ! | TTTGTAATGGAATTCCGCGT+AGG | + | chr3.4:84325482-84325501 | None:intergenic | 40.0% |
| !! | ACTGCTGATTCTTATGGTAC+TGG | - | chr3.4:84324707-84324726 | MS.gene013533:CDS | 40.0% |
| !! | ATATTTTGGATCATCCTGCG+AGG | + | chr3.4:84328163-84328182 | None:intergenic | 40.0% |
| !! | ATTGACTTGACTCCAGGAAT+TGG | + | chr3.4:84328052-84328071 | None:intergenic | 40.0% |
| !! | CCCCGAATGTCTTTAAAGTA+TGG | + | chr3.4:84325734-84325753 | None:intergenic | 40.0% |
| !! | GCTGGTTGGTCTTTCTTTAA+AGG | + | chr3.4:84327877-84327896 | None:intergenic | 40.0% |
| !! | TCATTCGAGATTTTCGAGGT+TGG | - | chr3.4:84324768-84324787 | MS.gene013533:intron | 40.0% |
| !! | TGTGTTATTGACTTGACTCC+AGG | + | chr3.4:84328058-84328077 | None:intergenic | 40.0% |
| !!! | CATCTTGAGCTTCTGGTTTT+GGG | + | chr3.4:84324546-84324565 | None:intergenic | 40.0% |
| !!! | TCCAATGGGTTTTGGAACTT+GGG | - | chr3.4:84324583-84324602 | MS.gene013533:intron | 40.0% |
| !!! | TCTTGCTGCAGTTTTGTTGT+TGG | - | chr3.4:84324452-84324471 | MS.gene013533:CDS | 40.0% |
| AAACGAGCTACTTCAGTTGG+AGG | - | chr3.4:84328120-84328139 | MS.gene013533:CDS | 45.0% | |
| AAGACGCAAAACCATGTCAC+AGG | - | chr3.4:84326646-84326665 | MS.gene013533:intron | 45.0% | |
| AGAGGAAAATTTGGGTGCTC+TGG | - | chr3.4:84328081-84328100 | MS.gene013533:CDS | 45.0% | |
| AGATTGGATCAGAAGACCGA+AGG | + | chr3.4:84327316-84327335 | None:intergenic | 45.0% | |
| CAACAGCTTGAACTAAACCC+TGG | + | chr3.4:84325835-84325854 | None:intergenic | 45.0% | |
| CAACCACTTGTGCTAGACTT+CGG | - | chr3.4:84326952-84326971 | MS.gene013533:intron | 45.0% | |
| CAACTGAAGTAGCTCGTTTG+AGG | + | chr3.4:84328119-84328138 | None:intergenic | 45.0% | |
| CACATAACTGTCCTTGTCCT+AGG | - | chr3.4:84327898-84327917 | MS.gene013533:intron | 45.0% | |
| CATGGGGTAATCAGCTTCTT+TGG | - | chr3.4:84324606-84324625 | MS.gene013533:CDS | 45.0% | |
| CCAAAACCAGAAGCTCAAGA+TGG | - | chr3.4:84324544-84324563 | MS.gene013533:intron | 45.0% | |
| CTAGGACAAGGACAGTTATG+TGG | + | chr3.4:84327900-84327919 | None:intergenic | 45.0% | |
| CTAGGACTTGGAATGCTTAC+TGG | - | chr3.4:84326406-84326425 | MS.gene013533:CDS | 45.0% | |
| CTCAAACGAGCTACTTCAGT+TGG | - | chr3.4:84328117-84328136 | MS.gene013533:CDS | 45.0% | |
| CTCAATAAAGGATCCAGTCC+TGG | + | chr3.4:84326602-84326621 | None:intergenic | 45.0% | |
| GAGGAAAATTTGGGTGCTCT+GGG | - | chr3.4:84328082-84328101 | MS.gene013533:CDS | 45.0% | |
| GCACTTCCTCAGAGAAAAAG+GGG | - | chr3.4:84325290-84325309 | MS.gene013533:intron | 45.0% | |
| GCTTACAGTTCCGTCTACTT+TGG | - | chr3.4:84327203-84327222 | MS.gene013533:CDS | 45.0% | |
| GGTCAGAGTGAGAAACTTCT+TGG | - | chr3.4:84324740-84324759 | MS.gene013533:CDS | 45.0% | |
| GTAAGCATTCCAAGTCCTAG+AGG | + | chr3.4:84326406-84326425 | None:intergenic | 45.0% | |
| GTTGTAACACACCTAGGACA+AGG | + | chr3.4:84327912-84327931 | None:intergenic | 45.0% | |
| TAGACGGAACTGTAAGCATG+CGG | + | chr3.4:84327200-84327219 | None:intergenic | 45.0% | |
| TCAGCATCCAAACTTCCAAC+TGG | - | chr3.4:84326436-84326455 | MS.gene013533:CDS | 45.0% | |
| TGGGGTAATCAGCTTCTTTG+GGG | - | chr3.4:84324608-84324627 | MS.gene013533:CDS | 45.0% | |
| TTGGGATAGGACAACTGCAT+TGG | - | chr3.4:84325589-84325608 | MS.gene013533:intron | 45.0% | |
| ! | AAAATTTGGGTGCTCTGGGT+TGG | - | chr3.4:84328086-84328105 | MS.gene013533:CDS | 45.0% |
| ! | CAGGGTTTAGTTCAAGCTGT+TGG | - | chr3.4:84325833-84325852 | MS.gene013533:intron | 45.0% |
| ! | CTTTCAGGGCATCACTAGAT+AGG | - | chr3.4:84325550-84325569 | MS.gene013533:intron | 45.0% |
| ! | GGAAGTATACCAGAAGACCA+AGG | + | chr3.4:84326262-84326281 | None:intergenic | 45.0% |
| !! | AGCTCTTTGGGATGGTTTAG+TGG | - | chr3.4:84325644-84325663 | MS.gene013533:intron | 45.0% |
| !! | AGTGTGTCTCCAATGGGTTT+TGG | - | chr3.4:84324575-84324594 | MS.gene013533:intron | 45.0% |
| !! | GCTTATAGTCCTCTAGGACT+TGG | - | chr3.4:84326394-84326413 | MS.gene013533:CDS | 45.0% |
| !!! | CCATCTTGAGCTTCTGGTTT+TGG | + | chr3.4:84324547-84324566 | None:intergenic | 45.0% |
| !!! | CTCCAATGGGTTTTGGAACT+TGG | - | chr3.4:84324582-84324601 | MS.gene013533:intron | 45.0% |
| !!! | TTCTGGTTTTGGGTGGATGA+TGG | + | chr3.4:84324536-84324555 | None:intergenic | 45.0% |
| ACAAGGACAGTTATGTGGGC+TGG | + | chr3.4:84327895-84327914 | None:intergenic | 50.0% | |
| AGTTCCGTCTACTTTGGCAC+CGG | - | chr3.4:84327209-84327228 | MS.gene013533:intron | 50.0% | |
| CCAAACTTCCAACTGGACCA+AGG | - | chr3.4:84326443-84326462 | MS.gene013533:CDS | 50.0% | |
| CCACTACACAGTACACCTTC+AGG | + | chr3.4:84326841-84326860 | None:intergenic | 50.0% | |
| CCTCTCAGTGTGTCTCCAAT+GGG | - | chr3.4:84324569-84324588 | MS.gene013533:intron | 50.0% | |
| CCTTGGTCCAGTTGGAAGTT+TGG | + | chr3.4:84326446-84326465 | None:intergenic | 50.0% | |
| CTACCGAAGTCTAGCACAAG+TGG | + | chr3.4:84326958-84326977 | None:intergenic | 50.0% | |
| CTTGTGCTAGACTTCGGTAG+TGG | - | chr3.4:84326958-84326977 | MS.gene013533:intron | 50.0% | |
| GCCCAAGTTCCAAAACCCAT+TGG | + | chr3.4:84324587-84324606 | None:intergenic | 50.0% | |
| GCGTAGATGTCAACACACCT+TGG | + | chr3.4:84326463-84326482 | None:intergenic | 50.0% | |
| GTTTGTCGATGCTTGCAGGT+AGG | - | chr3.4:84325378-84325397 | MS.gene013533:intron | 50.0% | |
| TCAACACACCTTGGTCCAGT+TGG | + | chr3.4:84326454-84326473 | None:intergenic | 50.0% | |
| TCTACCTGGGCTGAGCATAA+CGG | + | chr3.4:84325923-84325942 | None:intergenic | 50.0% | |
| TGGAGCTCAGAACAAGGACA+CGG | + | chr3.4:84327355-84327374 | None:intergenic | 50.0% | |
| TTATCCATGGCGCCTTACAC+CGG | - | chr3.4:84325351-84325370 | MS.gene013533:intron | 50.0% | |
| ! | AGTCTGCAACTTGTGCTGCT+GGG | + | chr3.4:84328318-84328337 | None:intergenic | 50.0% |
| ! | CCTGAAGGTGTACTGTGTAG+TGG | - | chr3.4:84326838-84326857 | MS.gene013533:intron | 50.0% |
| ! | CTGAGCATAACGGAACTCCA+CGG | + | chr3.4:84325913-84325932 | None:intergenic | 50.0% |
| ! | GGCATTTGGAGCTCAGAACA+AGG | + | chr3.4:84327361-84327380 | None:intergenic | 50.0% |
| ! | TGGATGATGGCCATAGGGAA+GGG | + | chr3.4:84324523-84324542 | None:intergenic | 50.0% |
| ! | TTGGGTGGATGATGGCCATA+GGG | + | chr3.4:84324528-84324547 | None:intergenic | 50.0% |
| ! | TTTGGGTGGATGATGGCCAT+AGG | + | chr3.4:84324529-84324548 | None:intergenic | 50.0% |
| !!! | CTTGAGCTTCTGGTTTTGGG+TGG | + | chr3.4:84324543-84324562 | None:intergenic | 50.0% |
| !!! | GGGTTTTGGAACTTGGGCAT+GGG | - | chr3.4:84324589-84324608 | MS.gene013533:CDS | 50.0% |
| !!! | GGTTTTGGAACTTGGGCATG+GGG | - | chr3.4:84324590-84324609 | MS.gene013533:CDS | 50.0% |
| !!! | TGGGTTTTGGAACTTGGGCA+TGG | - | chr3.4:84324588-84324607 | MS.gene013533:CDS | 50.0% |
| AGTACACCTTCAGGCCCTTC+AGG | + | chr3.4:84326832-84326851 | None:intergenic | 55.0% | |
| AGTTCCGTTATGCTCAGCCC+AGG | - | chr3.4:84325916-84325935 | MS.gene013533:intron | 55.0% | |
| CAGTCTGCAACTTGTGCTGC+TGG | + | chr3.4:84328319-84328338 | None:intergenic | 55.0% | |
| CCCATTGGAGACACACTGAG+AGG | + | chr3.4:84324572-84324591 | None:intergenic | 55.0% | |
| CCTCAGAGAAAAAGGGGAGC+CGG | - | chr3.4:84325296-84325315 | MS.gene013533:intron | 55.0% | |
| GCCTCTCAGTGTGTCTCCAA+TGG | - | chr3.4:84324568-84324587 | MS.gene013533:intron | 55.0% | |
| GGCAGTTTGTCGATGCTTGC+AGG | - | chr3.4:84325374-84325393 | MS.gene013533:intron | 55.0% | |
| TATCCATGGCGCCTTACACC+GGG | - | chr3.4:84325352-84325371 | MS.gene013533:intron | 55.0% | |
| ! | CCTACCGGTGCCAAAGTAGA+CGG | + | chr3.4:84327216-84327235 | None:intergenic | 55.0% |
| ! | GTCTGCAACTTGTGCTGCTG+GGG | + | chr3.4:84328317-84328336 | None:intergenic | 55.0% |
| ! | GTGGATGATGGCCATAGGGA+AGG | + | chr3.4:84324524-84324543 | None:intergenic | 55.0% |
| !! | CAAGCATCGACAAACTGCCC+CGG | + | chr3.4:84325373-84325392 | None:intergenic | 55.0% |
| !! | GGACAGTTATGTGGGCTGGT+TGG | + | chr3.4:84327891-84327910 | None:intergenic | 55.0% |
| ACCTTCAGGCCCTTCAGGCT+TGG | + | chr3.4:84326827-84326846 | None:intergenic | 60.0% | |
| AGAAGATGGGCCAAGCCTGC+AGG | + | chr3.4:84327240-84327259 | None:intergenic | 60.0% | |
| ATCCATGGCGCCTTACACCG+GGG | - | chr3.4:84325353-84325372 | MS.gene013533:intron | 60.0% | |
| CGACAAACTGCCCCGGTGTA+AGG | + | chr3.4:84325366-84325385 | None:intergenic | 60.0% | |
| GAAGATGGGCCAAGCCTGCA+GGG | + | chr3.4:84327239-84327258 | None:intergenic | 60.0% | |
| GAGGCCCCATCTTGAGCTTC+TGG | + | chr3.4:84324553-84324572 | None:intergenic | 60.0% | |
| TCCAAGCCTGAAGGGCCTGA+AGG | - | chr3.4:84326823-84326842 | MS.gene013533:intron | 60.0% | |
| TGCAGGCTTGGCCCATCTTC+TGG | - | chr3.4:84327239-84327258 | MS.gene013533:intron | 60.0% | |
| ! | CCGGCTCCCCTTTTTCTCTG+AGG | + | chr3.4:84325299-84325318 | None:intergenic | 60.0% |
| !! | CCGTCTACTTTGGCACCGGT+AGG | - | chr3.4:84327213-84327232 | MS.gene013533:intron | 60.0% |
| CAGCACAGCAATCGCCTCGC+AGG | - | chr3.4:84328146-84328165 | MS.gene013533:CDS | 65.0% | |
| ACCGGTAGGCCCTGCAGGCT+TGG | - | chr3.4:84327227-84327246 | MS.gene013533:intron | 70.0% | |
| GCCAAGCCTGCAGGGCCTAC+CGG | + | chr3.4:84327231-84327250 | None:intergenic | 70.0% | |
| ! | TGCCCCGGTGTAAGGCGCCA+TGG | + | chr3.4:84325358-84325377 | None:intergenic | 70.0% |
| !! | TTGGCACCGGTAGGCCCTGC+AGG | - | chr3.4:84327222-84327241 | MS.gene013533:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 84324440 | 84328339 | 84324440 | ID=MS.gene013533 |
| chr3.4 | mRNA | 84324440 | 84328339 | 84324440 | ID=MS.gene013533.t1;Parent=MS.gene013533 |
| chr3.4 | exon | 84327994 | 84328339 | 84327994 | ID=MS.gene013533.t1.exon1;Parent=MS.gene013533.t1 |
| chr3.4 | CDS | 84327994 | 84328339 | 84327994 | ID=cds.MS.gene013533.t1;Parent=MS.gene013533.t1 |
| chr3.4 | exon | 84327384 | 84327477 | 84327384 | ID=MS.gene013533.t1.exon2;Parent=MS.gene013533.t1 |
| chr3.4 | CDS | 84327384 | 84327477 | 84327384 | ID=cds.MS.gene013533.t1;Parent=MS.gene013533.t1 |
| chr3.4 | exon | 84327099 | 84327222 | 84327099 | ID=MS.gene013533.t1.exon3;Parent=MS.gene013533.t1 |
| chr3.4 | CDS | 84327099 | 84327222 | 84327099 | ID=cds.MS.gene013533.t1;Parent=MS.gene013533.t1 |
| chr3.4 | exon | 84326842 | 84326943 | 84326842 | ID=MS.gene013533.t1.exon4;Parent=MS.gene013533.t1 |
| chr3.4 | CDS | 84326842 | 84326943 | 84326842 | ID=cds.MS.gene013533.t1;Parent=MS.gene013533.t1 |
| chr3.4 | exon | 84326315 | 84326466 | 84326315 | ID=MS.gene013533.t1.exon5;Parent=MS.gene013533.t1 |
| chr3.4 | CDS | 84326315 | 84326466 | 84326315 | ID=cds.MS.gene013533.t1;Parent=MS.gene013533.t1 |
| chr3.4 | exon | 84326112 | 84326205 | 84326112 | ID=MS.gene013533.t1.exon6;Parent=MS.gene013533.t1 |
| chr3.4 | CDS | 84326112 | 84326205 | 84326112 | ID=cds.MS.gene013533.t1;Parent=MS.gene013533.t1 |
| chr3.4 | exon | 84324585 | 84324766 | 84324585 | ID=MS.gene013533.t1.exon7;Parent=MS.gene013533.t1 |
| chr3.4 | CDS | 84324585 | 84324766 | 84324585 | ID=cds.MS.gene013533.t1;Parent=MS.gene013533.t1 |
| chr3.4 | exon | 84324440 | 84324473 | 84324440 | ID=MS.gene013533.t1.exon8;Parent=MS.gene013533.t1 |
| chr3.4 | CDS | 84324440 | 84324473 | 84324440 | ID=cds.MS.gene013533.t1;Parent=MS.gene013533.t1 |
| Gene Sequence |
| Protein sequence |
