Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022150.t1 | XP_003621684.1 | 91.7 | 338 | 28 | 0 | 1 | 338 | 1 | 338 | 5.10E-178 | 633.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022150.t1 | Q7XT99 | 76.6 | 342 | 75 | 3 | 2 | 338 | 9 | 350 | 2.4e-152 | 539.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022150.t1 | A2Q5A8 | 91.7 | 338 | 28 | 0 | 1 | 338 | 1 | 338 | 3.7e-178 | 633.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022150.t1 | MTR_7g021680 | 91.445 | 339 | 29 | 0 | 1 | 339 | 1 | 339 | 0.0 | 642 |
| MS.gene022150.t1 | MTR_7g021820 | 91.445 | 339 | 29 | 0 | 1 | 339 | 1 | 339 | 0.0 | 642 |
| MS.gene022150.t1 | MTR_7g021850 | 87.059 | 340 | 42 | 2 | 1 | 339 | 1 | 339 | 0.0 | 614 |
| MS.gene022150.t1 | MTR_7g114980 | 58.160 | 337 | 130 | 7 | 6 | 332 | 13 | 348 | 3.82e-137 | 393 |
| MS.gene022150.t1 | MTR_7g114990 | 56.627 | 332 | 135 | 6 | 7 | 332 | 16 | 344 | 4.72e-136 | 390 |
| MS.gene022150.t1 | MTR_1g102750 | 56.845 | 336 | 137 | 6 | 4 | 332 | 5 | 339 | 4.62e-132 | 380 |
| MS.gene022150.t1 | MTR_7g114970 | 55.132 | 341 | 139 | 6 | 4 | 334 | 7 | 343 | 1.69e-129 | 374 |
| MS.gene022150.t1 | MTR_7g115010 | 53.134 | 335 | 133 | 7 | 6 | 332 | 11 | 329 | 2.93e-122 | 355 |
| MS.gene022150.t1 | MTR_7g114980 | 60.854 | 281 | 103 | 5 | 6 | 280 | 13 | 292 | 1.16e-118 | 344 |
| MS.gene022150.t1 | MTR_7g114970 | 59.712 | 278 | 108 | 4 | 6 | 280 | 9 | 285 | 3.01e-117 | 340 |
| MS.gene022150.t1 | MTR_1g102750 | 59.574 | 282 | 110 | 4 | 4 | 282 | 5 | 285 | 1.13e-116 | 340 |
| MS.gene022150.t1 | MTR_7g114970 | 59.140 | 279 | 110 | 4 | 4 | 279 | 7 | 284 | 3.27e-116 | 338 |
| MS.gene022150.t1 | MTR_7g021825 | 94.521 | 146 | 8 | 0 | 157 | 302 | 15 | 160 | 8.32e-101 | 294 |
| MS.gene022150.t1 | MTR_7g114970 | 58.130 | 246 | 91 | 4 | 97 | 334 | 8 | 249 | 1.11e-95 | 284 |
| MS.gene022150.t1 | MTR_7g114970 | 62.887 | 194 | 70 | 2 | 6 | 197 | 9 | 202 | 1.09e-84 | 254 |
| MS.gene022150.t1 | MTR_7g021670 | 86.923 | 130 | 17 | 0 | 1 | 130 | 1 | 130 | 1.15e-77 | 238 |
| MS.gene022150.t1 | MTR_7g021670 | 95.495 | 111 | 5 | 0 | 230 | 340 | 144 | 254 | 4.70e-72 | 224 |
| MS.gene022150.t1 | MTR_7g114970 | 56.436 | 202 | 76 | 4 | 138 | 331 | 1 | 198 | 1.16e-72 | 224 |
| MS.gene022150.t1 | MTR_7g021685 | 89.855 | 69 | 7 | 0 | 1 | 69 | 1 | 69 | 2.41e-40 | 138 |
| MS.gene022150.t1 | MTR_1g102740 | 50.476 | 105 | 48 | 1 | 232 | 332 | 3 | 107 | 3.30e-32 | 116 |
| MS.gene022150.t1 | MTR_3g449790 | 30.409 | 342 | 183 | 10 | 6 | 314 | 37 | 356 | 1.03e-29 | 117 |
| MS.gene022150.t1 | MTR_3g449790 | 29.825 | 342 | 179 | 10 | 6 | 314 | 37 | 350 | 3.49e-29 | 115 |
| MS.gene022150.t1 | MTR_7g067855 | 35.862 | 145 | 54 | 4 | 227 | 332 | 10 | 154 | 5.55e-24 | 96.7 |
| MS.gene022150.t1 | MTR_3g092140 | 28.814 | 295 | 172 | 11 | 38 | 310 | 71 | 349 | 1.30e-23 | 101 |
| MS.gene022150.t1 | MTR_1g047250 | 26.962 | 293 | 185 | 10 | 41 | 312 | 35 | 319 | 3.60e-18 | 84.3 |
| MS.gene022150.t1 | MTR_1g042730 | 26.934 | 349 | 202 | 13 | 8 | 309 | 65 | 407 | 4.62e-18 | 85.1 |
| MS.gene022150.t1 | MTR_4g092750 | 28.704 | 216 | 139 | 6 | 8 | 213 | 5 | 215 | 1.69e-15 | 76.6 |
| MS.gene022150.t1 | MTR_4g092750 | 28.704 | 216 | 139 | 6 | 8 | 213 | 5 | 215 | 1.77e-15 | 76.3 |
| MS.gene022150.t1 | MTR_4g092750 | 28.704 | 216 | 139 | 6 | 8 | 213 | 5 | 215 | 2.88e-15 | 75.5 |
| MS.gene022150.t1 | MTR_8g088160 | 25.830 | 271 | 151 | 10 | 14 | 238 | 49 | 315 | 2.99e-13 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022150.t1 | AT1G60730 | 76.401 | 339 | 77 | 2 | 4 | 339 | 7 | 345 | 0.0 | 534 |
| MS.gene022150.t1 | AT1G60710 | 75.811 | 339 | 79 | 2 | 4 | 339 | 7 | 345 | 0.0 | 531 |
| MS.gene022150.t1 | AT1G60680 | 75.221 | 339 | 80 | 3 | 4 | 338 | 7 | 345 | 0.0 | 523 |
| MS.gene022150.t1 | AT1G60690 | 73.669 | 338 | 86 | 2 | 4 | 338 | 7 | 344 | 0.0 | 522 |
| MS.gene022150.t1 | AT1G60730 | 72.145 | 359 | 77 | 3 | 4 | 339 | 7 | 365 | 0.0 | 521 |
| MS.gene022150.t1 | AT1G10810 | 71.006 | 338 | 95 | 2 | 4 | 338 | 7 | 344 | 1.46e-177 | 496 |
| MS.gene022150.t1 | AT1G60750 | 70.796 | 339 | 78 | 4 | 4 | 338 | 8 | 329 | 1.93e-172 | 482 |
| MS.gene022150.t1 | AT1G10810 | 70.849 | 271 | 76 | 2 | 71 | 338 | 22 | 292 | 3.00e-139 | 397 |
| MS.gene022150.t1 | AT1G60680 | 78.070 | 228 | 48 | 2 | 4 | 229 | 7 | 234 | 2.72e-126 | 362 |
| MS.gene022150.t1 | AT1G10810 | 73.276 | 232 | 61 | 1 | 4 | 234 | 7 | 238 | 2.81e-120 | 347 |
| MS.gene022150.t1 | AT1G60730 | 73.381 | 139 | 36 | 1 | 4 | 141 | 7 | 145 | 1.70e-67 | 210 |
| MS.gene022150.t1 | AT5G53580 | 31.010 | 287 | 160 | 10 | 46 | 310 | 80 | 350 | 2.48e-26 | 107 |
| MS.gene022150.t1 | AT1G06690 | 28.614 | 332 | 202 | 12 | 6 | 314 | 48 | 367 | 3.46e-25 | 104 |
| MS.gene022150.t1 | AT4G33670 | 24.695 | 328 | 213 | 9 | 1 | 314 | 1 | 308 | 1.88e-20 | 90.9 |
| MS.gene022150.t1 | AT1G04690 | 26.582 | 316 | 186 | 11 | 8 | 296 | 5 | 301 | 7.70e-20 | 89.4 |
| MS.gene022150.t1 | AT1G04420 | 25.627 | 359 | 214 | 16 | 8 | 319 | 60 | 412 | 3.50e-17 | 82.4 |
Find 79 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTAATTTGGCTACAAAATT+TGG | 0.121716 | 7.3:+77923113 | MS.gene022150:CDS |
| TTGATTAAAGTTCTCAATTT+TGG | 0.142629 | 7.3:-77924412 | None:intergenic |
| TCCAACTGCACAGCTGTTAT+TGG | 0.217840 | 7.3:-77923612 | None:intergenic |
| AGTGAGAGAGAAAGTTAATT+TGG | 0.231011 | 7.3:+77923100 | MS.gene022150:CDS |
| CACACCAATGAACTTCTTCT+TGG | 0.235392 | 7.3:+77922338 | MS.gene022150:CDS |
| CTTGACACTTCTGACTTCTA+TGG | 0.238699 | 7.3:+77922311 | MS.gene022150:CDS |
| ATACTCCACCACTCTCTTCT+TGG | 0.280266 | 7.3:+77924553 | MS.gene022150:CDS |
| AAGAAATAATTCCAACTTGC+AGG | 0.330054 | 7.3:+77923664 | MS.gene022150:CDS |
| TTTCTCAGGGAACTTGGTAT+TGG | 0.337507 | 7.3:+77923960 | MS.gene022150:intron |
| ATGAGCATGTCTGCTTTCTA+TGG | 0.353634 | 7.3:+77922221 | MS.gene022150:CDS |
| GAAACTAACACAAGAAGAAA+TGG | 0.366761 | 7.3:+77924455 | MS.gene022150:CDS |
| ATCATGTCAGGTTCAGGTTT+AGG | 0.367686 | 7.3:-77922248 | None:intergenic |
| TGTGCTCTTCTGATTGTTGC+TGG | 0.384514 | 7.3:-77923579 | None:intergenic |
| AATCAAACCGTGACTTCAAT+TGG | 0.385343 | 7.3:-77923272 | None:intergenic |
| CTTTCCAAGAAGAAGTTCAT+TGG | 0.393549 | 7.3:-77922342 | None:intergenic |
| AGAGCAATCATGTCAGGTTC+AGG | 0.397066 | 7.3:-77922254 | None:intergenic |
| TATTGTGGAATAGGCTTTGA+AGG | 0.410461 | 7.3:+77923076 | MS.gene022150:intron |
| GAAGTATCCTTGCAAGGACT+TGG | 0.431625 | 7.3:+77922194 | MS.gene022150:CDS |
| AAAAGTGACACCAGATTGTA+TGG | 0.442868 | 7.3:-77922288 | None:intergenic |
| CAGGCAGCTCTCACATAACT+TGG | 0.449453 | 7.3:-77923176 | None:intergenic |
| ATATAGTCTGATTCTGCTGC+AGG | 0.450000 | 7.3:-77924281 | None:intergenic |
| ATAGTTGCATATAGTCCTCT+TGG | 0.466082 | 7.3:+77923984 | MS.gene022150:CDS |
| CAATGAACTGGCCACAAAGA+AGG | 0.472154 | 7.3:+77924314 | MS.gene022150:CDS |
| TGGAGTACATCCCTTCTTTG+TGG | 0.473648 | 7.3:-77924325 | None:intergenic |
| CAATGAACTTCTTCTTGGAA+AGG | 0.477419 | 7.3:+77922343 | MS.gene022150:CDS |
| TCGGGCACACGTCGTTTCCT+TGG | 0.481328 | 7.3:-77924377 | None:intergenic |
| ATTTGACAAAGTCAATGAAC+TGG | 0.487530 | 7.3:+77924302 | MS.gene022150:CDS |
| CATCTCAGCTTGCATTGGCA+TGG | 0.489745 | 7.3:+77924346 | MS.gene022150:CDS |
| AAACTAACACAAGAAGAAAT+GGG | 0.490480 | 7.3:+77924456 | MS.gene022150:CDS |
| TCCAATAACAGCTGTGCAGT+TGG | 0.490955 | 7.3:+77923611 | MS.gene022150:CDS |
| GCTAAAGAAACTTGTTGAAG+AGG | 0.493371 | 7.3:+77923521 | MS.gene022150:CDS |
| ATCCACCATGCCATACAATC+TGG | 0.499815 | 7.3:+77922278 | MS.gene022150:CDS |
| GTTGCTTGACAACTTGCAAA+AGG | 0.500919 | 7.3:+77924034 | MS.gene022150:CDS |
| TAAATATCACACCTGCAAGT+TGG | 0.505103 | 7.3:-77923675 | None:intergenic |
| GTCTTTAGCAGATGCTGTCA+AGG | 0.506077 | 7.3:+77924488 | MS.gene022150:CDS |
| AACGACGTGTGCCCGATACC+TGG | 0.512377 | 7.3:+77924384 | MS.gene022150:CDS |
| TACTCCATCTCAGCTTGCAT+TGG | 0.515172 | 7.3:+77924341 | MS.gene022150:CDS |
| AATGAACTGGCCACAAAGAA+GGG | 0.518216 | 7.3:+77924315 | MS.gene022150:CDS |
| TGCAGTTGGAGTGGTCACTA+TGG | 0.523922 | 7.3:+77923625 | MS.gene022150:CDS |
| CATGCCAATGCAAGCTGAGA+TGG | 0.529498 | 7.3:-77924345 | None:intergenic |
| CTAAAGAAACTTGTTGAAGA+GGG | 0.535689 | 7.3:+77923522 | MS.gene022150:CDS |
| TCTCCTCAAGCTACCCTCAC+AGG | 0.537840 | 7.3:-77923195 | None:intergenic |
| TAGTTGCATATAGTCCTCTT+GGG | 0.540181 | 7.3:+77923985 | MS.gene022150:CDS |
| TCTTCTGATTGTTGCTGGCG+AGG | 0.543846 | 7.3:-77923574 | None:intergenic |
| GCATATAGTCCTCTTGGGCG+AGG | 0.551187 | 7.3:+77923990 | MS.gene022150:CDS |
| TCGTCTTCCAATTGAAGTCA+CGG | 0.553776 | 7.3:+77923265 | MS.gene022150:CDS |
| GAAGTTAGCATCACAAGGCA+TGG | 0.555188 | 7.3:+77922172 | MS.gene022150:CDS |
| TGGATGAGAGCAATCATGTC+AGG | 0.561182 | 7.3:-77922260 | None:intergenic |
| ACTTGCAAAAGGATGACTAC+AGG | 0.576791 | 7.3:+77924045 | MS.gene022150:CDS |
| ATGTCAGGTTCAGGTTTAGG+AGG | 0.578905 | 7.3:-77922245 | None:intergenic |
| CATGCAACCAAGTCCTTGCA+AGG | 0.582983 | 7.3:-77922201 | None:intergenic |
| ATTGTGGAATAGGCTTTGAA+GGG | 0.593782 | 7.3:+77923077 | MS.gene022150:intron |
| GAGAACTTTAATCAAAACAT+CGG | 0.604615 | 7.3:+77924420 | MS.gene022150:CDS |
| TAACAGCTGTGCAGTTGGAG+TGG | 0.606322 | 7.3:+77923616 | MS.gene022150:CDS |
| CAAGGGTGGTAGATATGTAG+AGG | 0.607536 | 7.3:+77924506 | MS.gene022150:CDS |
| AAAATACATCGGTTTGTCTG+AGG | 0.609392 | 7.3:+77923551 | MS.gene022150:CDS |
| ACTGAGAACAATGGCAACGG+TGG | 0.610361 | 7.3:+77922142 | None:intergenic |
| ATGTAGAGGATACAAGTACA+TGG | 0.611228 | 7.3:+77924520 | MS.gene022150:CDS |
| ACTATGGTCAAGAGATGTTG+AGG | 0.614034 | 7.3:+77923641 | MS.gene022150:CDS |
| TCTTTAGCAGATGCTGTCAA+GGG | 0.621026 | 7.3:+77924489 | MS.gene022150:CDS |
| GGCATGGAAGTATCCTTGCA+AGG | 0.628587 | 7.3:+77922188 | MS.gene022150:CDS |
| GAAAAGAATCCTCGCCCAAG+AGG | 0.632204 | 7.3:-77923999 | None:intergenic |
| CTGAGAACAATGGCAACGGT+GGG | 0.633450 | 7.3:+77922143 | None:intergenic |
| GAGGGGAAAATAAAATACAT+CGG | 0.640822 | 7.3:+77923540 | MS.gene022150:CDS |
| TAAAGAAACTTGTTGAAGAG+GGG | 0.641137 | 7.3:+77923523 | MS.gene022150:CDS |
| CTGCCTGTGAGGGTAGCTTG+AGG | 0.643621 | 7.3:+77923192 | MS.gene022150:CDS |
| TTAGCAGATGCTGTCAAGGG+TGG | 0.645754 | 7.3:+77924492 | MS.gene022150:CDS |
| TATGTGAGAGCTGCCTGTGA+GGG | 0.649703 | 7.3:+77923182 | MS.gene022150:CDS |
| GCTTTCCAAGAAGAGAGTGG+TGG | 0.651055 | 7.3:-77924558 | None:intergenic |
| GCAAAAGGATGACTACAGGA+AGG | 0.664525 | 7.3:+77924049 | MS.gene022150:CDS |
| GCAGCTTTCCAAGAAGAGAG+TGG | 0.668200 | 7.3:-77924561 | None:intergenic |
| CACCAGATTGTATGGCATGG+TGG | 0.673902 | 7.3:-77922280 | None:intergenic |
| TTGGCATGGCTTCATCACCA+AGG | 0.680145 | 7.3:+77924360 | MS.gene022150:CDS |
| AGAAGAAGTTCATTGGTGTG+AGG | 0.680165 | 7.3:-77922335 | None:intergenic |
| AGAATGAAGTTAGCATCACA+AGG | 0.680742 | 7.3:+77922167 | MS.gene022150:CDS |
| TTATGTGAGAGCTGCCTGTG+AGG | 0.683210 | 7.3:+77923181 | MS.gene022150:CDS |
| AAGACTGAGAACAATGGCAA+CGG | 0.684251 | 7.3:+77922139 | None:intergenic |
| GAAGAGAAATATGAGATCTG+TGG | 0.699778 | 7.3:+77923149 | MS.gene022150:CDS |
| TGACACCAGATTGTATGGCA+TGG | 0.709987 | 7.3:-77922283 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATCGTAAAAAAAATT+CGG | - | chr7.3:77922705-77922724 | None:intergenic | 10.0% |
| !! | TTAAAAGTCAAAAAAAATTT+CGG | - | chr7.3:77922764-77922783 | None:intergenic | 10.0% |
| !!! | AAAAAACTGATTTTTTTTTA+AGG | - | chr7.3:77922681-77922700 | None:intergenic | 10.0% |
| !!! | AAAATTAAAACTGAAATTTT+CGG | - | chr7.3:77922729-77922748 | None:intergenic | 10.0% |
| !!! | AATATGATGAATATTTTATA+TGG | + | chr7.3:77924080-77924099 | MS.gene022150:intron | 10.0% |
| !!! | ATTGTTAATCATTTAAAATT+TGG | + | chr7.3:77922555-77922574 | MS.gene022150:intron | 10.0% |
| !!! | ATTGTTAATCATTTAAAATT+TGG | - | chr7.3:77922574-77922555 | None:intergenic | 10.0% |
| !!! | TGAAAAAAAATTTTTTTTGA+AGG | + | chr7.3:77922829-77922848 | MS.gene022150:intron | 10.0% |
| !! | AAAAATCGTAAAAAAAATTC+GGG | - | chr7.3:77922704-77922723 | None:intergenic | 15.0% |
| !! | AAAACAAAAAAAAATAAGTC+AGG | - | chr7.3:77922652-77922671 | None:intergenic | 15.0% |
| !! | AAACAAAAAAAAATAAGTCA+GGG | - | chr7.3:77922651-77922670 | None:intergenic | 15.0% |
| !!! | AAATTAAAACTGAAATTTTC+GGG | - | chr7.3:77922728-77922747 | None:intergenic | 15.0% |
| !!! | TTCTTTTGATTTAAATTTCA+GGG | + | chr7.3:77922394-77922413 | MS.gene022150:intron | 15.0% |
| !!! | TTTCTTTTGATTTAAATTTC+AGG | + | chr7.3:77922393-77922412 | MS.gene022150:intron | 15.0% |
| !! | AAATCAAAAGAAAAGCTAAA+AGG | - | chr7.3:77922386-77922405 | None:intergenic | 20.0% |
| !! | AAATCAAAGAGAATTGTAAA+GGG | - | chr7.3:77923301-77923320 | None:intergenic | 20.0% |
| !! | AACAAAAAAAAATAAGTCAG+GGG | - | chr7.3:77922650-77922669 | None:intergenic | 20.0% |
| !! | AATCAAAAGAAAAGCTAAAA+GGG | - | chr7.3:77922385-77922404 | None:intergenic | 20.0% |
| !! | AATTCACAATCATATACAAT+AGG | - | chr7.3:77923041-77923060 | None:intergenic | 20.0% |
| !! | TATTTAACACAAGTTCTTTA+TGG | + | chr7.3:77924104-77924123 | MS.gene022150:intron | 20.0% |
| !! | TTAAATGATTAACAATTGCA+GGG | + | chr7.3:77922937-77922956 | MS.gene022150:intron | 20.0% |
| !! | TTAAATGATTAACAATTGCA+GGG | - | chr7.3:77922956-77922937 | None:intergenic | 20.0% |
| !! | TTTAAATGATTAACAATTGC+AGG | + | chr7.3:77922936-77922955 | MS.gene022150:intron | 20.0% |
| !! | TTTAAATGATTAACAATTGC+AGG | - | chr7.3:77922955-77922936 | None:intergenic | 20.0% |
| !!! | AATTCTCTTTGATTTGATTT+TGG | + | chr7.3:77923306-77923325 | MS.gene022150:intron | 20.0% |
| !!! | ATGTGATATTTTCCTAATTT+AGG | + | chr7.3:77923353-77923372 | MS.gene022150:intron | 20.0% |
| !!! | ATTTTACAAACATGCTTAAA+AGG | - | chr7.3:77924226-77924245 | None:intergenic | 20.0% |
| !!! | TTGATTAAAGTTCTCAATTT+TGG | - | chr7.3:77924415-77924434 | None:intergenic | 20.0% |
| ! | AAACTAACACAAGAAGAAAT+GGG | + | chr7.3:77924456-77924475 | MS.gene022150:CDS | 25.0% |
| ! | ACACTTTCAATTTGAATTGT+TGG | + | chr7.3:77923894-77923913 | MS.gene022150:intron | 25.0% |
| ! | AGGAAAAAAAAAATTAGCAC+AGG | + | chr7.3:77922849-77922868 | MS.gene022150:intron | 25.0% |
| ! | ATGATATTGTATAGGCTTAA+TGG | + | chr7.3:77922455-77922474 | MS.gene022150:intron | 25.0% |
| ! | ATGTTTGTAAAATATGTTGC+AGG | + | chr7.3:77924233-77924252 | MS.gene022150:intron | 25.0% |
| ! | ATTTGTGTGTCTTGTAAATT+AGG | + | chr7.3:77924183-77924202 | MS.gene022150:intron | 25.0% |
| ! | CAAATCAAAGAGAATTGTAA+AGG | - | chr7.3:77923302-77923321 | None:intergenic | 25.0% |
| ! | GAAAAAAAAAATTAGCACAG+GGG | + | chr7.3:77922851-77922870 | MS.gene022150:intron | 25.0% |
| ! | GAGAACTTTAATCAAAACAT+CGG | + | chr7.3:77924420-77924439 | MS.gene022150:CDS | 25.0% |
| ! | GGAAAAAAAAAATTAGCACA+GGG | + | chr7.3:77922850-77922869 | MS.gene022150:intron | 25.0% |
| ! | TAAATGATTAACAATTGCAG+GGG | + | chr7.3:77922938-77922957 | MS.gene022150:intron | 25.0% |
| ! | TAAATGATTAACAATTGCAG+GGG | - | chr7.3:77922957-77922938 | None:intergenic | 25.0% |
| ! | TTAATCACTGTTGACAAAAA+TGG | - | chr7.3:77922897-77922916 | None:intergenic | 25.0% |
| ! | TTTGTGTGTCTTGTAAATTA+GGG | + | chr7.3:77924184-77924203 | MS.gene022150:intron | 25.0% |
| ! | TTTGTTGCATGATATTGTAT+AGG | + | chr7.3:77922447-77922466 | MS.gene022150:intron | 25.0% |
| !! | AGTTATGATTTTCTTTCTCA+GGG | + | chr7.3:77923947-77923966 | MS.gene022150:intron | 25.0% |
| !! | ATTAAAGTTCTCAATTTTGG+TGG | - | chr7.3:77924412-77924431 | None:intergenic | 25.0% |
| !! | ATTCAAATTGAAAGTGTGTT+TGG | - | chr7.3:77923891-77923910 | None:intergenic | 25.0% |
| !! | GTTAATTTGGCTACAAAATT+TGG | + | chr7.3:77923113-77923132 | MS.gene022150:CDS | 25.0% |
| !! | TTTGATTTAAATTTCAGGGT+AGG | + | chr7.3:77922398-77922417 | MS.gene022150:intron | 25.0% |
| !!! | ACTTTAGTTTTGCCTAAATT+AGG | - | chr7.3:77923368-77923387 | None:intergenic | 25.0% |
| !!! | TTGGTTTTCTTTGTTAGATT+GGG | + | chr7.3:77923496-77923515 | MS.gene022150:intron | 25.0% |
| !!! | TTTGGTTTTCTTTGTTAGAT+TGG | + | chr7.3:77923495-77923514 | MS.gene022150:intron | 25.0% |
| AAGAAATAATTCCAACTTGC+AGG | + | chr7.3:77923664-77923683 | MS.gene022150:CDS | 30.0% | |
| AAGTGTGAATATTGTGGAAT+AGG | + | chr7.3:77923067-77923086 | MS.gene022150:intron | 30.0% | |
| AGTGAGAGAGAAAGTTAATT+TGG | + | chr7.3:77923100-77923119 | MS.gene022150:CDS | 30.0% | |
| ATGCTTAAAAGGCAGAATAT+GGG | - | chr7.3:77924215-77924234 | None:intergenic | 30.0% | |
| ATTTGACAAAGTCAATGAAC+TGG | + | chr7.3:77924302-77924321 | MS.gene022150:CDS | 30.0% | |
| GAAACTAACACAAGAAGAAA+TGG | + | chr7.3:77924455-77924474 | MS.gene022150:CDS | 30.0% | |
| GAGGGGAAAATAAAATACAT+CGG | + | chr7.3:77923540-77923559 | MS.gene022150:CDS | 30.0% | |
| TTGATGAAGTGTGAATATTG+TGG | + | chr7.3:77923061-77923080 | MS.gene022150:intron | 30.0% | |
| TTTGTCAACAGTGATTAAGT+TGG | + | chr7.3:77922899-77922918 | MS.gene022150:intron | 30.0% | |
| ! | GAGTTATGATTTTCTTTCTC+AGG | + | chr7.3:77923946-77923965 | MS.gene022150:intron | 30.0% |
| ! | TGGTTTTCTTTGTTAGATTG+GGG | + | chr7.3:77923497-77923516 | MS.gene022150:intron | 30.0% |
| !! | CTAAAGAAACTTGTTGAAGA+GGG | + | chr7.3:77923522-77923541 | MS.gene022150:CDS | 30.0% |
| !! | TAAAGAAACTTGTTGAAGAG+GGG | + | chr7.3:77923523-77923542 | MS.gene022150:CDS | 30.0% |
| !!! | TGTGATGACTTCAACTTTTT+TGG | + | chr7.3:77923477-77923496 | MS.gene022150:intron | 30.0% |
| AAAAGTGACACCAGATTGTA+TGG | - | chr7.3:77922291-77922310 | None:intergenic | 35.0% | |
| AATAGGCGGCGTTTAAAAAT+TGG | + | chr7.3:77922495-77922514 | MS.gene022150:intron | 35.0% | |
| AATAGGCGGCGTTTAAAAAT+TGG | - | chr7.3:77922514-77922495 | None:intergenic | 35.0% | |
| AATCAAACCGTGACTTCAAT+TGG | - | chr7.3:77923275-77923294 | None:intergenic | 35.0% | |
| ACTGTTGACAAAAATGGCAT+GGG | - | chr7.3:77922891-77922910 | None:intergenic | 35.0% | |
| AGAATGAAGTTAGCATCACA+AGG | + | chr7.3:77922167-77922186 | MS.gene022150:CDS | 35.0% | |
| ATAGTTGCATATAGTCCTCT+TGG | + | chr7.3:77923984-77924003 | MS.gene022150:CDS | 35.0% | |
| ATGTAGAGGATACAAGTACA+TGG | + | chr7.3:77924520-77924539 | MS.gene022150:CDS | 35.0% | |
| CAATGAACTTCTTCTTGGAA+AGG | + | chr7.3:77922343-77922362 | MS.gene022150:CDS | 35.0% | |
| CAGATTAGCAAAAATGGCAT+GGG | + | chr7.3:77922610-77922629 | MS.gene022150:intron | 35.0% | |
| CATGCTTAAAAGGCAGAATA+TGG | - | chr7.3:77924216-77924235 | None:intergenic | 35.0% | |
| CTTTCCAAGAAGAAGTTCAT+TGG | - | chr7.3:77922345-77922364 | None:intergenic | 35.0% | |
| GAAGAGAAATATGAGATCTG+TGG | + | chr7.3:77923149-77923168 | MS.gene022150:CDS | 35.0% | |
| TAAATATCACACCTGCAAGT+TGG | - | chr7.3:77923678-77923697 | None:intergenic | 35.0% | |
| TAGTTGCATATAGTCCTCTT+GGG | + | chr7.3:77923985-77924004 | MS.gene022150:CDS | 35.0% | |
| ! | ATTTTCTTTCTCAGGGAACT+TGG | + | chr7.3:77923954-77923973 | MS.gene022150:intron | 35.0% |
| ! | TATTGTGGAATAGGCTTTGA+AGG | + | chr7.3:77923076-77923095 | MS.gene022150:intron | 35.0% |
| !! | AAAATACATCGGTTTGTCTG+AGG | + | chr7.3:77923551-77923570 | MS.gene022150:CDS | 35.0% |
| !! | ACAGTGATTAAGTTGGTCAA+AGG | + | chr7.3:77922906-77922925 | MS.gene022150:intron | 35.0% |
| !! | ATTGTGGAATAGGCTTTGAA+GGG | + | chr7.3:77923077-77923096 | MS.gene022150:intron | 35.0% |
| !! | GCTAAAGAAACTTGTTGAAG+AGG | + | chr7.3:77923521-77923540 | MS.gene022150:CDS | 35.0% |
| !!! | AAATTAGCACAGGGGTATTT+TGG | + | chr7.3:77922859-77922878 | MS.gene022150:intron | 35.0% |
| AATGAACTGGCCACAAAGAA+GGG | + | chr7.3:77924315-77924334 | MS.gene022150:CDS | 40.0% | |
| ACTATGGTCAAGAGATGTTG+AGG | + | chr7.3:77923641-77923660 | MS.gene022150:CDS | 40.0% | |
| ACTTGCAAAAGGATGACTAC+AGG | + | chr7.3:77924045-77924064 | MS.gene022150:CDS | 40.0% | |
| AGAAGAAGTTCATTGGTGTG+AGG | - | chr7.3:77922338-77922357 | None:intergenic | 40.0% | |
| ATATAGTCTGATTCTGCTGC+AGG | - | chr7.3:77924284-77924303 | None:intergenic | 40.0% | |
| ATGAGCATGTCTGCTTTCTA+TGG | + | chr7.3:77922221-77922240 | MS.gene022150:CDS | 40.0% | |
| CACACCAATGAACTTCTTCT+TGG | + | chr7.3:77922338-77922357 | MS.gene022150:CDS | 40.0% | |
| CACTGTTGACAAAAATGGCA+TGG | - | chr7.3:77922892-77922911 | None:intergenic | 40.0% | |
| CCAGATTAGCAAAAATGGCA+TGG | + | chr7.3:77922609-77922628 | MS.gene022150:intron | 40.0% | |
| CGTCACCAGATTAGCAAAAA+TGG | + | chr7.3:77922604-77922623 | MS.gene022150:intron | 40.0% | |
| CTTGACACTTCTGACTTCTA+TGG | + | chr7.3:77922311-77922330 | MS.gene022150:CDS | 40.0% | |
| GTTGCTTGACAACTTGCAAA+AGG | + | chr7.3:77924034-77924053 | MS.gene022150:CDS | 40.0% | |
| TCGTCTTCCAATTGAAGTCA+CGG | + | chr7.3:77923265-77923284 | MS.gene022150:CDS | 40.0% | |
| TCTTTAGCAGATGCTGTCAA+GGG | + | chr7.3:77924489-77924508 | MS.gene022150:CDS | 40.0% | |
| TGTCTTTAGTCCCTGCAAAT+AGG | - | chr7.3:77923010-77923029 | None:intergenic | 40.0% | |
| TTTCTCAGGGAACTTGGTAT+TGG | + | chr7.3:77923960-77923979 | MS.gene022150:intron | 40.0% | |
| ! | ATCATGTCAGGTTCAGGTTT+AGG | - | chr7.3:77922251-77922270 | None:intergenic | 40.0% |
| ! | GTAGCTTAGACTTTTGCATC+AGG | + | chr7.3:77923328-77923347 | MS.gene022150:intron | 40.0% |
| !! | ATTTTGGTGGTTCCAGGTAT+CGG | - | chr7.3:77924399-77924418 | None:intergenic | 40.0% |
| !! | GCAGTGATTAAGTTGGTCAA+AGG | - | chr7.3:77922582-77922601 | None:intergenic | 40.0% |
| !! | TTCTCAATTTTGGTGGTTCC+AGG | - | chr7.3:77924405-77924424 | None:intergenic | 40.0% |
| !! | TTTTTGCTAATCTGGTGACG+TGG | - | chr7.3:77922604-77922623 | None:intergenic | 40.0% |
| !!! | AGGTTTTCAGGTTGAAATCG+TGG | - | chr7.3:77924264-77924283 | None:intergenic | 40.0% |
| !!! | CCATGCCATTTTTGCTAATC+TGG | - | chr7.3:77922612-77922631 | None:intergenic | 40.0% |
| AATTGCAGGGGTAAAATGCC+AGG | + | chr7.3:77922950-77922969 | MS.gene022150:intron | 45.0% | |
| AATTGCAGGGGTAAAATGCC+AGG | - | chr7.3:77922969-77922950 | None:intergenic | 45.0% | |
| AGAGCAATCATGTCAGGTTC+AGG | - | chr7.3:77922257-77922276 | None:intergenic | 45.0% | |
| ATACTCCACCACTCTCTTCT+TGG | + | chr7.3:77924553-77924572 | MS.gene022150:CDS | 45.0% | |
| ATCCACCATGCCATACAATC+TGG | + | chr7.3:77922278-77922297 | MS.gene022150:CDS | 45.0% | |
| CAAGGGTGGTAGATATGTAG+AGG | + | chr7.3:77924506-77924525 | MS.gene022150:CDS | 45.0% | |
| CAATGAACTGGCCACAAAGA+AGG | + | chr7.3:77924314-77924333 | MS.gene022150:CDS | 45.0% | |
| CTAGCATTTCTCTCTCTCTC+TGG | + | chr7.3:77923723-77923742 | MS.gene022150:intron | 45.0% | |
| CTTTAGTCCCTGCAAATAGG+CGG | - | chr7.3:77923007-77923026 | None:intergenic | 45.0% | |
| GAAGTTAGCATCACAAGGCA+TGG | + | chr7.3:77922172-77922191 | MS.gene022150:CDS | 45.0% | |
| GCAAAAGGATGACTACAGGA+AGG | + | chr7.3:77924049-77924068 | MS.gene022150:CDS | 45.0% | |
| GTCTTTAGCAGATGCTGTCA+AGG | + | chr7.3:77924488-77924507 | MS.gene022150:CDS | 45.0% | |
| TACTCCATCTCAGCTTGCAT+TGG | + | chr7.3:77924341-77924360 | MS.gene022150:CDS | 45.0% | |
| TCCAACTGCACAGCTGTTAT+TGG | - | chr7.3:77923615-77923634 | None:intergenic | 45.0% | |
| TCCAATAACAGCTGTGCAGT+TGG | + | chr7.3:77923611-77923630 | MS.gene022150:CDS | 45.0% | |
| TGACACCAGATTGTATGGCA+TGG | - | chr7.3:77922286-77922305 | None:intergenic | 45.0% | |
| TGACGTGGCAGTGATTAAGT+TGG | - | chr7.3:77922589-77922608 | None:intergenic | 45.0% | |
| TGGAGTACATCCCTTCTTTG+TGG | - | chr7.3:77924328-77924347 | None:intergenic | 45.0% | |
| TGGATGAGAGCAATCATGTC+AGG | - | chr7.3:77922263-77922282 | None:intergenic | 45.0% | |
| TGTGCTCTTCTGATTGTTGC+TGG | - | chr7.3:77923582-77923601 | None:intergenic | 45.0% | |
| TTAAACGCCGCCTATTTGCA+GGG | + | chr7.3:77922997-77923016 | MS.gene022150:intron | 45.0% | |
| TTAAACGCCGCCTATTTGCA+GGG | - | chr7.3:77923016-77922997 | None:intergenic | 45.0% | |
| TTTAAACGCCGCCTATTTGC+AGG | + | chr7.3:77922996-77923015 | MS.gene022150:intron | 45.0% | |
| TTTAAACGCCGCCTATTTGC+AGG | - | chr7.3:77923015-77922996 | None:intergenic | 45.0% | |
| ! | ATGCCAGGATTAGCGATTAC+AGG | + | chr7.3:77922965-77922984 | MS.gene022150:intron | 45.0% |
| ! | ATGCCAGGATTAGCGATTAC+AGG | - | chr7.3:77922984-77922965 | None:intergenic | 45.0% |
| ! | ATGTCAGGTTCAGGTTTAGG+AGG | - | chr7.3:77922248-77922267 | None:intergenic | 45.0% |
| ! | GAAGTATCCTTGCAAGGACT+TGG | + | chr7.3:77922194-77922213 | MS.gene022150:CDS | 45.0% |
| ! | TGATTCTGCTGCAGGTTTTC+AGG | - | chr7.3:77924276-77924295 | None:intergenic | 45.0% |
| ! | TGCCAGGATTAGCGATTACA+GGG | + | chr7.3:77922966-77922985 | MS.gene022150:intron | 45.0% |
| ! | TGCCAGGATTAGCGATTACA+GGG | - | chr7.3:77922985-77922966 | None:intergenic | 45.0% |
| !! | TTTTGGTGGTTCCAGGTATC+GGG | - | chr7.3:77924398-77924417 | None:intergenic | 45.0% |
| CACCAGATTGTATGGCATGG+TGG | - | chr7.3:77922283-77922302 | None:intergenic | 50.0% | |
| CAGGCAGCTCTCACATAACT+TGG | - | chr7.3:77923179-77923198 | None:intergenic | 50.0% | |
| CATGCAACCAAGTCCTTGCA+AGG | - | chr7.3:77922204-77922223 | None:intergenic | 50.0% | |
| CATGCCAATGCAAGCTGAGA+TGG | - | chr7.3:77924348-77924367 | None:intergenic | 50.0% | |
| GAAAAGAATCCTCGCCCAAG+AGG | - | chr7.3:77924002-77924021 | None:intergenic | 50.0% | |
| GCAGCTTTCCAAGAAGAGAG+TGG | - | chr7.3:77924564-77924583 | None:intergenic | 50.0% | |
| GCTTTCCAAGAAGAGAGTGG+TGG | - | chr7.3:77924561-77924580 | None:intergenic | 50.0% | |
| GTCCCTGTAATCGCTAATCC+TGG | + | chr7.3:77922517-77922536 | MS.gene022150:intron | 50.0% | |
| GTCCCTGTAATCGCTAATCC+TGG | - | chr7.3:77922536-77922517 | None:intergenic | 50.0% | |
| TAAACGCCGCCTATTTGCAG+GGG | - | chr7.3:77923017-77922998 | None:intergenic | 50.0% | |
| TAACAGCTGTGCAGTTGGAG+TGG | + | chr7.3:77923616-77923635 | MS.gene022150:CDS | 50.0% | |
| TATGTGAGAGCTGCCTGTGA+GGG | + | chr7.3:77923182-77923201 | MS.gene022150:CDS | 50.0% | |
| TCTTCTGATTGTTGCTGGCG+AGG | - | chr7.3:77923577-77923596 | None:intergenic | 50.0% | |
| TGCAGTTGGAGTGGTCACTA+TGG | + | chr7.3:77923625-77923644 | MS.gene022150:CDS | 50.0% | |
| TGTGTTTCGCCCCTGCAAAT+AGG | + | chr7.3:77922478-77922497 | MS.gene022150:intron | 50.0% | |
| TTAGCAGATGCTGTCAAGGG+TGG | + | chr7.3:77924492-77924511 | MS.gene022150:CDS | 50.0% | |
| TTATGTGAGAGCTGCCTGTG+AGG | + | chr7.3:77923181-77923200 | MS.gene022150:CDS | 50.0% | |
| TTGGCATGGCTTCATCACCA+AGG | + | chr7.3:77924360-77924379 | MS.gene022150:CDS | 50.0% | |
| ! | CATCTCAGCTTGCATTGGCA+TGG | + | chr7.3:77924346-77924365 | MS.gene022150:CDS | 50.0% |
| ! | GGGCGAGGATTCTTTTCATC+AGG | + | chr7.3:77924005-77924024 | MS.gene022150:CDS | 50.0% |
| !! | GGCATGGAAGTATCCTTGCA+AGG | + | chr7.3:77922188-77922207 | MS.gene022150:CDS | 50.0% |
| GCATATAGTCCTCTTGGGCG+AGG | + | chr7.3:77923990-77924009 | MS.gene022150:CDS | 55.0% | |
| GTTTCGCCCCTGCAAATAGG+CGG | + | chr7.3:77922481-77922500 | MS.gene022150:intron | 55.0% | |
| TCTCCTCAAGCTACCCTCAC+AGG | - | chr7.3:77923198-77923217 | None:intergenic | 55.0% | |
| AACGACGTGTGCCCGATACC+TGG | + | chr7.3:77924384-77924403 | MS.gene022150:CDS | 60.0% | |
| CTGCCTGTGAGGGTAGCTTG+AGG | + | chr7.3:77923192-77923211 | MS.gene022150:CDS | 60.0% | |
| TCGGGCACACGTCGTTTCCT+TGG | - | chr7.3:77924380-77924399 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 77922152 | 77924590 | 77922152 | ID=MS.gene022150 |
| chr7.3 | mRNA | 77922152 | 77924590 | 77922152 | ID=MS.gene022150.t1;Parent=MS.gene022150 |
| chr7.3 | exon | 77922152 | 77922364 | 77922152 | ID=MS.gene022150.t1.exon1;Parent=MS.gene022150.t1 |
| chr7.3 | CDS | 77922152 | 77922364 | 77922152 | ID=cds.MS.gene022150.t1;Parent=MS.gene022150.t1 |
| chr7.3 | exon | 77923089 | 77923286 | 77923089 | ID=MS.gene022150.t1.exon2;Parent=MS.gene022150.t1 |
| chr7.3 | CDS | 77923089 | 77923286 | 77923089 | ID=cds.MS.gene022150.t1;Parent=MS.gene022150.t1 |
| chr7.3 | exon | 77923513 | 77923685 | 77923513 | ID=MS.gene022150.t1.exon3;Parent=MS.gene022150.t1 |
| chr7.3 | CDS | 77923513 | 77923685 | 77923513 | ID=cds.MS.gene022150.t1;Parent=MS.gene022150.t1 |
| chr7.3 | exon | 77923968 | 77924070 | 77923968 | ID=MS.gene022150.t1.exon4;Parent=MS.gene022150.t1 |
| chr7.3 | CDS | 77923968 | 77924070 | 77923968 | ID=cds.MS.gene022150.t1;Parent=MS.gene022150.t1 |
| chr7.3 | exon | 77924255 | 77924590 | 77924255 | ID=MS.gene022150.t1.exon5;Parent=MS.gene022150.t1 |
| chr7.3 | CDS | 77924255 | 77924590 | 77924255 | ID=cds.MS.gene022150.t1;Parent=MS.gene022150.t1 |
| Gene Sequence |
| Protein sequence |
