Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93602.t1 | XP_003621701.1 | 95.9 | 338 | 14 | 0 | 1 | 338 | 1 | 338 | 2.40E-188 | 667.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93602.t1 | Q7XT99 | 77.1 | 341 | 73 | 2 | 2 | 337 | 9 | 349 | 1.2e-154 | 547.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93602.t1 | A2Q5B6 | 95.9 | 338 | 14 | 0 | 1 | 338 | 1 | 338 | 1.8e-188 | 667.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054892 | MS.gene93602 | 0.800013 | 1.76E-48 | -1.69E-46 |
| MS.gene055147 | MS.gene93602 | 0.830403 | 3.00E-55 | -1.69E-46 |
| MS.gene055148 | MS.gene93602 | 0.81057 | 1.08E-50 | -1.69E-46 |
| MS.gene05952 | MS.gene93602 | 0.802943 | 4.41E-49 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93602.t1 | MTR_7g021850 | 95.858 | 338 | 14 | 0 | 1 | 338 | 1 | 338 | 0.0 | 680 |
| MS.gene93602.t1 | MTR_7g021680 | 87.059 | 340 | 42 | 2 | 1 | 339 | 1 | 339 | 0.0 | 620 |
| MS.gene93602.t1 | MTR_7g021820 | 87.059 | 340 | 42 | 2 | 1 | 339 | 1 | 339 | 0.0 | 620 |
| MS.gene93602.t1 | MTR_1g102750 | 58.333 | 336 | 132 | 5 | 4 | 332 | 5 | 339 | 6.90e-137 | 392 |
| MS.gene93602.t1 | MTR_7g114980 | 57.567 | 337 | 132 | 5 | 6 | 332 | 13 | 348 | 1.90e-134 | 387 |
| MS.gene93602.t1 | MTR_7g114970 | 57.396 | 338 | 136 | 5 | 4 | 334 | 7 | 343 | 2.55e-134 | 386 |
| MS.gene93602.t1 | MTR_7g114990 | 56.928 | 332 | 134 | 6 | 7 | 332 | 16 | 344 | 1.85e-133 | 384 |
| MS.gene93602.t1 | MTR_1g102750 | 61.348 | 282 | 106 | 3 | 4 | 283 | 5 | 285 | 4.97e-122 | 353 |
| MS.gene93602.t1 | MTR_7g115010 | 52.994 | 334 | 133 | 5 | 7 | 332 | 12 | 329 | 8.51e-121 | 351 |
| MS.gene93602.t1 | MTR_7g114970 | 61.071 | 280 | 106 | 3 | 4 | 281 | 7 | 285 | 9.61e-121 | 349 |
| MS.gene93602.t1 | MTR_7g114970 | 60.932 | 279 | 106 | 3 | 4 | 280 | 7 | 284 | 1.02e-119 | 347 |
| MS.gene93602.t1 | MTR_7g114980 | 60.854 | 281 | 104 | 3 | 6 | 281 | 13 | 292 | 1.94e-119 | 346 |
| MS.gene93602.t1 | MTR_7g114970 | 60.246 | 244 | 90 | 4 | 94 | 331 | 4 | 246 | 4.85e-99 | 293 |
| MS.gene93602.t1 | MTR_7g021825 | 89.041 | 146 | 16 | 0 | 158 | 303 | 15 | 160 | 3.60e-97 | 285 |
| MS.gene93602.t1 | MTR_7g114970 | 63.402 | 194 | 70 | 1 | 6 | 198 | 9 | 202 | 1.03e-85 | 257 |
| MS.gene93602.t1 | MTR_7g114970 | 59.799 | 199 | 73 | 4 | 139 | 331 | 1 | 198 | 1.79e-76 | 233 |
| MS.gene93602.t1 | MTR_7g021670 | 85.496 | 131 | 18 | 1 | 1 | 131 | 1 | 130 | 9.00e-76 | 234 |
| MS.gene93602.t1 | MTR_7g021670 | 81.308 | 107 | 19 | 1 | 232 | 337 | 145 | 251 | 2.82e-56 | 184 |
| MS.gene93602.t1 | MTR_7g021685 | 89.855 | 69 | 7 | 0 | 1 | 69 | 1 | 69 | 1.09e-39 | 136 |
| MS.gene93602.t1 | MTR_1g102740 | 53.333 | 105 | 44 | 2 | 233 | 332 | 3 | 107 | 2.28e-31 | 114 |
| MS.gene93602.t1 | MTR_3g449790 | 29.446 | 343 | 186 | 11 | 6 | 315 | 37 | 356 | 5.58e-30 | 117 |
| MS.gene93602.t1 | MTR_3g449790 | 28.863 | 343 | 182 | 11 | 6 | 315 | 37 | 350 | 1.50e-29 | 116 |
| MS.gene93602.t1 | MTR_1g042730 | 27.327 | 333 | 191 | 12 | 8 | 296 | 65 | 390 | 3.49e-22 | 97.1 |
| MS.gene93602.t1 | MTR_3g092140 | 27.517 | 298 | 173 | 12 | 38 | 311 | 71 | 349 | 1.23e-21 | 95.9 |
| MS.gene93602.t1 | MTR_1g047250 | 26.168 | 321 | 208 | 10 | 9 | 310 | 6 | 316 | 5.57e-19 | 86.7 |
| MS.gene93602.t1 | MTR_4g092750 | 30.093 | 216 | 137 | 7 | 8 | 214 | 5 | 215 | 6.18e-17 | 80.1 |
| MS.gene93602.t1 | MTR_4g092750 | 30.093 | 216 | 137 | 7 | 8 | 214 | 5 | 215 | 7.94e-17 | 80.5 |
| MS.gene93602.t1 | MTR_4g092750 | 30.093 | 216 | 137 | 7 | 8 | 214 | 5 | 215 | 1.53e-16 | 79.3 |
| MS.gene93602.t1 | MTR_8g088160 | 25.461 | 271 | 153 | 10 | 14 | 239 | 49 | 315 | 5.26e-12 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93602.t1 | AT1G60710 | 76.331 | 338 | 77 | 2 | 4 | 338 | 7 | 344 | 0.0 | 541 |
| MS.gene93602.t1 | AT1G60730 | 76.261 | 337 | 77 | 2 | 4 | 337 | 7 | 343 | 0.0 | 538 |
| MS.gene93602.t1 | AT1G60690 | 74.631 | 339 | 83 | 2 | 4 | 339 | 7 | 345 | 0.0 | 536 |
| MS.gene93602.t1 | AT1G60680 | 75.444 | 338 | 79 | 3 | 4 | 337 | 7 | 344 | 0.0 | 527 |
| MS.gene93602.t1 | AT1G60730 | 71.989 | 357 | 77 | 3 | 4 | 337 | 7 | 363 | 0.0 | 526 |
| MS.gene93602.t1 | AT1G10810 | 70.710 | 338 | 96 | 2 | 4 | 338 | 7 | 344 | 5.68e-179 | 499 |
| MS.gene93602.t1 | AT1G60750 | 71.598 | 338 | 75 | 4 | 4 | 337 | 8 | 328 | 6.84e-176 | 491 |
| MS.gene93602.t1 | AT1G10810 | 70.111 | 271 | 78 | 2 | 71 | 338 | 22 | 292 | 1.23e-139 | 397 |
| MS.gene93602.t1 | AT1G60680 | 79.825 | 228 | 45 | 1 | 4 | 230 | 7 | 234 | 1.23e-131 | 375 |
| MS.gene93602.t1 | AT1G10810 | 74.569 | 232 | 59 | 0 | 4 | 235 | 7 | 238 | 3.71e-124 | 357 |
| MS.gene93602.t1 | AT1G60730 | 75.540 | 139 | 34 | 0 | 4 | 142 | 7 | 145 | 1.39e-72 | 223 |
| MS.gene93602.t1 | AT5G53580 | 30.345 | 290 | 159 | 11 | 46 | 311 | 80 | 350 | 6.84e-26 | 106 |
| MS.gene93602.t1 | AT1G06690 | 28.235 | 340 | 194 | 13 | 6 | 315 | 48 | 367 | 5.87e-25 | 104 |
| MS.gene93602.t1 | AT4G33670 | 26.220 | 328 | 209 | 10 | 1 | 315 | 1 | 308 | 4.93e-23 | 97.8 |
| MS.gene93602.t1 | AT1G04690 | 27.184 | 309 | 194 | 10 | 8 | 297 | 5 | 301 | 3.90e-22 | 95.5 |
| MS.gene93602.t1 | AT1G04420 | 26.519 | 362 | 212 | 14 | 8 | 325 | 60 | 411 | 9.70e-22 | 95.5 |
Find 77 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCAATTGCACAGCTGTTAT+TGG | 0.154954 | 7.3:-77825373 | None:intergenic |
| CTTCCATGTAGGTTCCTTTC+CGG | 0.219280 | 7.3:-77826748 | None:intergenic |
| AAATGTACCATCAGTATATT+TGG | 0.233249 | 7.3:-77824773 | None:intergenic |
| CACACCAATGAACTTCTTCT+TGG | 0.235392 | 7.3:+77824500 | MS.gene93602:CDS |
| GTTCTCAACTTTGGTGGTTC+CGG | 0.259522 | 7.3:-77826631 | None:intergenic |
| AAGAAATAATTCCAACTTGC+AGG | 0.276199 | 7.3:+77825425 | MS.gene93602:CDS |
| AGTTAGAGAGAAGGTTGAAT+TGG | 0.294606 | 7.3:+77824735 | MS.gene93602:CDS |
| GTTGAATTGGCTACAAAGTT+TGG | 0.298080 | 7.3:+77824748 | MS.gene93602:CDS |
| TTCTCAACTTTGGTGGTTCC+GGG | 0.307826 | 7.3:-77826630 | None:intergenic |
| ATGAGCATGTCTGCTTTCTA+TGG | 0.338980 | 7.3:+77824383 | MS.gene93602:CDS |
| TCCAATAACAGCTGTGCAAT+TGG | 0.363190 | 7.3:+77825372 | MS.gene93602:CDS |
| ACTTTGGTGGTTCCGGGTAT+CGG | 0.366436 | 7.3:-77826624 | None:intergenic |
| ATCATGTCAGGTTCAGGTTT+AGG | 0.367686 | 7.3:-77824410 | None:intergenic |
| TTTCTTAGGGAACTTGGTAT+TGG | 0.374176 | 7.3:+77825699 | MS.gene93602:intron |
| AATCTTACCGTGATTTCAAT+TGG | 0.392945 | 7.3:-77824907 | None:intergenic |
| AGAGCAATCATGTCAGGTTC+AGG | 0.397066 | 7.3:-77824416 | None:intergenic |
| CTTTGGTGGTTCCGGGTATC+GGG | 0.407993 | 7.3:-77826623 | None:intergenic |
| TTGATTAAAGTTCTCAACTT+TGG | 0.412299 | 7.3:-77826640 | None:intergenic |
| TAATGAACTGGCTGCTAAGA+AGG | 0.416202 | 7.3:+77826542 | MS.gene93602:CDS |
| GTCCTTGGCAGATATTGTTA+AGG | 0.418905 | 7.3:+77826716 | MS.gene93602:CDS |
| CTTTCCAAGAAGAAGTTCAT+TGG | 0.424932 | 7.3:-77824504 | None:intergenic |
| ATTTGAGAGGGTTAATGAAC+TGG | 0.426318 | 7.3:+77826530 | MS.gene93602:CDS |
| AATTGCAGAAATTGAGTCCT+TGG | 0.426435 | 7.3:+77826701 | MS.gene93602:CDS |
| ATTGTTGCATATAGTCCTCT+TGG | 0.432244 | 7.3:+77825723 | MS.gene93602:CDS |
| AATTGAGGACAGGCTTTGAA+TGG | 0.434369 | 7.3:+77824709 | MS.gene93602:intron |
| AAAAGTGACACCAGATTGTA+TGG | 0.442868 | 7.3:-77824450 | None:intergenic |
| GAATGGAGGAGTTAGAGAGA+AGG | 0.446432 | 7.3:+77824726 | MS.gene93602:CDS |
| CATGCAACCAAGTCCTTGTA+AGG | 0.458876 | 7.3:-77824363 | None:intergenic |
| ACACTCCACCACTTTCGTCT+TGG | 0.460340 | 7.3:+77826778 | MS.gene93602:CDS |
| TCCTTGGCAGATATTGTTAA+GGG | 0.464128 | 7.3:+77826717 | MS.gene93602:CDS |
| ACAGTAGGAAGAATGAAGTT+AGG | 0.469331 | 7.3:+77824320 | MS.gene93602:CDS |
| ATTGTTAAGGGTGACAGAAC+CGG | 0.471059 | 7.3:+77826729 | MS.gene93602:CDS |
| ATTAAAGTTCTCAACTTTGG+TGG | 0.473185 | 7.3:-77826637 | None:intergenic |
| ATTCACCATGCCATACAATC+TGG | 0.483546 | 7.3:+77824440 | MS.gene93602:CDS |
| CAAGCTTCTCTCACATAAGC+TGG | 0.487316 | 7.3:-77824811 | None:intergenic |
| CATCTCAGCTTGCATTGGCA+TGG | 0.489745 | 7.3:+77826574 | MS.gene93602:CDS |
| ACTAAATAAAACCTGCAAGT+TGG | 0.498167 | 7.3:-77825436 | None:intergenic |
| ATATAGTCTGATTCTGCTGT+AGG | 0.498584 | 7.3:-77826509 | None:intergenic |
| TGCAATTGGAGTGGTCACTA+TGG | 0.500317 | 7.3:+77825386 | MS.gene93602:CDS |
| TTGTTGCATATAGTCCTCTT+GGG | 0.500832 | 7.3:+77825724 | MS.gene93602:CDS |
| TCGGGCACACGTCGTCTCCT+TGG | 0.501395 | 7.3:-77826605 | None:intergenic |
| CAATGAACTTCTTCTTGGAA+AGG | 0.512113 | 7.3:+77824505 | MS.gene93602:CDS |
| GAGGGGAAAATAAAATACAT+TGG | 0.514660 | 7.3:+77825301 | MS.gene93602:CDS |
| TACTCCATCTCAGCTTGCAT+TGG | 0.515172 | 7.3:+77826569 | MS.gene93602:CDS |
| CATGCCAATGCAAGCTGAGA+TGG | 0.529498 | 7.3:-77826573 | None:intergenic |
| GAAGTGTCCTTACAAGGACT+TGG | 0.532825 | 7.3:+77824356 | MS.gene93602:CDS |
| TCTTCTGATTGTTGAAGCTG+AGG | 0.532875 | 7.3:-77825335 | None:intergenic |
| GTGTCAGATTCCTTCCATGT+AGG | 0.542312 | 7.3:-77826759 | None:intergenic |
| GCATATAGTCCTCTTGGGAG+AGG | 0.543332 | 7.3:+77825729 | MS.gene93602:CDS |
| TGAATGAGAGCAATCATGTC+AGG | 0.558885 | 7.3:-77824422 | None:intergenic |
| GGGATGGAAGTGTCCTTACA+AGG | 0.559327 | 7.3:+77824350 | MS.gene93602:CDS |
| GAAGTTAGGATCACAAGGGA+TGG | 0.564034 | 7.3:+77824334 | MS.gene93602:CDS |
| TGAGGACAGGCTTTGAATGG+AGG | 0.569130 | 7.3:+77824712 | MS.gene93602:intron |
| TACAAAGGATGACTACCGCC+AGG | 0.569817 | 7.3:+77825788 | MS.gene93602:CDS |
| TCGTCTTCCAATTGAAATCA+CGG | 0.570295 | 7.3:+77824900 | MS.gene93602:CDS |
| GACGACGTGTGCCCGATACC+CGG | 0.570620 | 7.3:+77826612 | MS.gene93602:CDS |
| GTCACTATGGTCAAGAGATG+TGG | 0.578807 | 7.3:+77825399 | MS.gene93602:CDS |
| GAACCGGAAAGGAACCTACA+TGG | 0.581675 | 7.3:+77826745 | MS.gene93602:CDS |
| AGAATCAGACTATATTTGAG+AGG | 0.585843 | 7.3:+77826517 | MS.gene93602:CDS |
| AATGAACTGGCTGCTAAGAA+GGG | 0.592584 | 7.3:+77826543 | MS.gene93602:CDS |
| CTGAGAACAATGGCAACAGT+AGG | 0.598309 | 7.3:+77824305 | None:intergenic |
| GAATCAGACTATATTTGAGA+GGG | 0.604511 | 7.3:+77826518 | MS.gene93602:CDS |
| CGGAAAGGAACCTACATGGA+AGG | 0.604731 | 7.3:+77826749 | MS.gene93602:CDS |
| GAGAACTTTAATCAAAACAT+CGG | 0.608267 | 7.3:+77826648 | MS.gene93602:CDS |
| ACCCTTAACAATATCTGCCA+AGG | 0.610315 | 7.3:-77826718 | None:intergenic |
| AGAATGAAGTTAGGATCACA+AGG | 0.616212 | 7.3:+77824329 | MS.gene93602:CDS |
| TTTGGAGCCAAATATACTGA+TGG | 0.623125 | 7.3:+77824766 | MS.gene93602:CDS |
| GAAAAGAATCCTCTCCCAAG+AGG | 0.625633 | 7.3:-77825738 | None:intergenic |
| GATTGCTGAGAACTTTACAA+AGG | 0.626430 | 7.3:+77825773 | MS.gene93602:CDS |
| TAAGGGTGACAGAACCGGAA+AGG | 0.631823 | 7.3:+77826734 | MS.gene93602:CDS |
| ACTATGGTCAAGAGATGTGG+AGG | 0.647256 | 7.3:+77825402 | MS.gene93602:CDS |
| TAACAGCTGTGCAATTGGAG+TGG | 0.661184 | 7.3:+77825377 | MS.gene93602:CDS |
| AGAAGAAGTTCATTGGTGTG+AGG | 0.680165 | 7.3:-77824497 | None:intergenic |
| TTGGCATGGCTTCATCACCA+AGG | 0.693380 | 7.3:+77826588 | MS.gene93602:CDS |
| TGACACCAGATTGTATGGCA+TGG | 0.709987 | 7.3:-77824445 | None:intergenic |
| GATGGTACATTTGAGATCTG+TGG | 0.711076 | 7.3:+77824784 | MS.gene93602:CDS |
| GAATGAAGTTAGGATCACAA+GGG | 0.757296 | 7.3:+77824330 | MS.gene93602:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGACTATAAAATTTTATATT+AGG | - | chr7.3:77824550-77824569 | None:intergenic | 10.0% |
| !! | AAGCATGAATAATTATTAAT+AGG | - | chr7.3:77826125-77826144 | None:intergenic | 15.0% |
| !! | ATTTACGTAAAATTAATGTT+TGG | + | chr7.3:77825034-77825053 | MS.gene93602:intron | 15.0% |
| !! | TATAAAAATGTGTTTCAATA+TGG | - | chr7.3:77825015-77825034 | None:intergenic | 15.0% |
| !!! | AAAATAAGCATTTTTTTTGA+AGG | - | chr7.3:77826159-77826178 | None:intergenic | 15.0% |
| !!! | AAAATTCTTTGATTTGATTT+TGG | + | chr7.3:77824936-77824955 | MS.gene93602:intron | 15.0% |
| !!! | ACATTGATTAATAAGTTATA+AGG | - | chr7.3:77826377-77826396 | None:intergenic | 15.0% |
| !!! | AGTTATGATTTTTTTTCTTA+GGG | + | chr7.3:77825686-77825705 | MS.gene93602:intron | 15.0% |
| !!! | TAGTTAAAATAGAACATTTT+GGG | - | chr7.3:77826079-77826098 | None:intergenic | 15.0% |
| !! | AAAAAAAATCATAACTCATG+AGG | - | chr7.3:77825682-77825701 | None:intergenic | 20.0% |
| !! | ATAGATTTCATTCAAGATAA+GGG | + | chr7.3:77825092-77825111 | MS.gene93602:intron | 20.0% |
| !! | ATCTATATAGTTCATATCAA+AGG | + | chr7.3:77826285-77826304 | MS.gene93602:intron | 20.0% |
| !! | GCGATTATAATTTAAGAAAA+TGG | + | chr7.3:77825545-77825564 | MS.gene93602:intron | 20.0% |
| !! | TATAGATTTCATTCAAGATA+AGG | + | chr7.3:77825091-77825110 | MS.gene93602:intron | 20.0% |
| !! | TTATTAATCAATGTACATCA+GGG | + | chr7.3:77826383-77826402 | MS.gene93602:intron | 20.0% |
| !!! | AGTTAAAATAGAACATTTTG+GGG | - | chr7.3:77826078-77826097 | None:intergenic | 20.0% |
| !!! | CAATCTAAGATATATATAAC+TGG | + | chr7.3:77825209-77825228 | MS.gene93602:intron | 20.0% |
| !!! | CTAGTTAAAATAGAACATTT+TGG | - | chr7.3:77826080-77826099 | None:intergenic | 20.0% |
| !!! | GAGTTATGATTTTTTTTCTT+AGG | + | chr7.3:77825685-77825704 | MS.gene93602:intron | 20.0% |
| !!! | TAATTAATGCTATTTTAGGA+AGG | - | chr7.3:77825153-77825172 | None:intergenic | 20.0% |
| ! | AAATGTACCATCAGTATATT+TGG | - | chr7.3:77824776-77824795 | None:intergenic | 25.0% |
| ! | AACTAACAAGTATGAAATAC+TGG | + | chr7.3:77825876-77825895 | MS.gene93602:intron | 25.0% |
| ! | ATAGTTGTAAAACAGATATC+TGG | - | chr7.3:77825179-77825198 | None:intergenic | 25.0% |
| ! | CTTAAAAAACTAGTTGAAGA+GGG | + | chr7.3:77825283-77825302 | MS.gene93602:CDS | 25.0% |
| ! | CTTATTAATCAATGTACATC+AGG | + | chr7.3:77826382-77826401 | MS.gene93602:intron | 25.0% |
| ! | GAGAACTTTAATCAAAACAT+CGG | + | chr7.3:77826648-77826667 | MS.gene93602:CDS | 25.0% |
| ! | TTAAAAAACTAGTTGAAGAG+GGG | + | chr7.3:77825284-77825303 | MS.gene93602:CDS | 25.0% |
| ! | TTAAAATTGCAATGATACGA+AGG | + | chr7.3:77825508-77825527 | MS.gene93602:intron | 25.0% |
| ! | TTGAATGTACTTACATGTAT+TGG | + | chr7.3:77825574-77825593 | MS.gene93602:intron | 25.0% |
| ! | TTGATTAAAGTTCTCAACTT+TGG | - | chr7.3:77826643-77826662 | None:intergenic | 25.0% |
| !!! | AAAAAAATGCTTATTTTCCG+TGG | + | chr7.3:77826162-77826181 | MS.gene93602:intron | 25.0% |
| !!! | ATTTTTTTTCTTAGGGAACT+TGG | + | chr7.3:77825693-77825712 | MS.gene93602:intron | 25.0% |
| !!! | GTGCTAATTAATGCTATTTT+AGG | - | chr7.3:77825157-77825176 | None:intergenic | 25.0% |
| AAAACATGTATGGTATAGTG+AGG | - | chr7.3:77826202-77826221 | None:intergenic | 30.0% | |
| AAATTGAGTACCATAAGCAT+AGG | + | chr7.3:77824965-77824984 | MS.gene93602:intron | 30.0% | |
| AAGAAATAATTCCAACTTGC+AGG | + | chr7.3:77825425-77825444 | MS.gene93602:CDS | 30.0% | |
| AATCTTACCGTGATTTCAAT+TGG | - | chr7.3:77824910-77824929 | None:intergenic | 30.0% | |
| AATGATTAAAGACGTGTGTT+TGG | - | chr7.3:77825634-77825653 | None:intergenic | 30.0% | |
| AATGTGTATGTGTGAAATTG+AGG | + | chr7.3:77824694-77824713 | MS.gene93602:intron | 30.0% | |
| ACTAAATAAAACCTGCAAGT+TGG | - | chr7.3:77825439-77825458 | None:intergenic | 30.0% | |
| AGAATCAGACTATATTTGAG+AGG | + | chr7.3:77826517-77826536 | MS.gene93602:CDS | 30.0% | |
| ATTAAAGTTCTCAACTTTGG+TGG | - | chr7.3:77826640-77826659 | None:intergenic | 30.0% | |
| ATTATATTTAGGCATCAGTG+AGG | - | chr7.3:77826437-77826456 | None:intergenic | 30.0% | |
| ATTGAATGCAATCTCATGTT+CGG | + | chr7.3:77825961-77825980 | MS.gene93602:intron | 30.0% | |
| ATTTCTACTACGCTATGTAA+AGG | - | chr7.3:77824667-77824686 | None:intergenic | 30.0% | |
| CCCAATCTTACATAGTAAAA+GGG | - | chr7.3:77825260-77825279 | None:intergenic | 30.0% | |
| GAATCAGACTATATTTGAGA+GGG | + | chr7.3:77826518-77826537 | MS.gene93602:CDS | 30.0% | |
| GAGGGGAAAATAAAATACAT+TGG | + | chr7.3:77825301-77825320 | MS.gene93602:CDS | 30.0% | |
| GCTTAAAAAACTAGTTGAAG+AGG | + | chr7.3:77825282-77825301 | MS.gene93602:CDS | 30.0% | |
| TATGGTATAGTGAGGATATA+CGG | - | chr7.3:77826194-77826213 | None:intergenic | 30.0% | |
| TATTACCAATGTCTATGTGT+CGG | - | chr7.3:77825921-77825940 | None:intergenic | 30.0% | |
| TTGTGGTTTCAAAACATGTA+TGG | - | chr7.3:77826212-77826231 | None:intergenic | 30.0% | |
| ! | CCCTTTTACTATGTAAGATT+GGG | + | chr7.3:77825257-77825276 | MS.gene93602:intron | 30.0% |
| ! | CCTTTTACTATGTAAGATTG+GGG | + | chr7.3:77825258-77825277 | MS.gene93602:intron | 30.0% |
| ! | CTTGATACTTCTGACTTTTA+TGG | + | chr7.3:77824473-77824492 | MS.gene93602:CDS | 30.0% |
| ! | TCCCTTTTACTATGTAAGAT+TGG | + | chr7.3:77825256-77825275 | MS.gene93602:intron | 30.0% |
| ! | TTATCTAGCATTTTTCTCTG+TGG | + | chr7.3:77825478-77825497 | MS.gene93602:intron | 30.0% |
| !!! | AGCATTTTTTTTGAAGGACA+CGG | - | chr7.3:77826153-77826172 | None:intergenic | 30.0% |
| AAAAGTGACACCAGATTGTA+TGG | - | chr7.3:77824453-77824472 | None:intergenic | 35.0% | |
| AAATCACTTAGCTCGATGTT+AGG | - | chr7.3:77824639-77824658 | None:intergenic | 35.0% | |
| AATTGCAGAAATTGAGTCCT+TGG | + | chr7.3:77826701-77826720 | MS.gene93602:CDS | 35.0% | |
| ACAGTAGGAAGAATGAAGTT+AGG | + | chr7.3:77824320-77824339 | MS.gene93602:CDS | 35.0% | |
| AGAATGAAGTTAGGATCACA+AGG | + | chr7.3:77824329-77824348 | MS.gene93602:CDS | 35.0% | |
| AGATCAAACTATGTGTAGCA+TGG | + | chr7.3:77826236-77826255 | MS.gene93602:intron | 35.0% | |
| AGTTAGAGAGAAGGTTGAAT+TGG | + | chr7.3:77824735-77824754 | MS.gene93602:CDS | 35.0% | |
| ATATAGTCTGATTCTGCTGT+AGG | - | chr7.3:77826512-77826531 | None:intergenic | 35.0% | |
| ATTGTTGCATATAGTCCTCT+TGG | + | chr7.3:77825723-77825742 | MS.gene93602:CDS | 35.0% | |
| ATTTGAGAGGGTTAATGAAC+TGG | + | chr7.3:77826530-77826549 | MS.gene93602:CDS | 35.0% | |
| CAATGAACTTCTTCTTGGAA+AGG | + | chr7.3:77824505-77824524 | MS.gene93602:CDS | 35.0% | |
| CATAGTTTGATCTGATCTTG+TGG | - | chr7.3:77826229-77826248 | None:intergenic | 35.0% | |
| CCCCAATCTTACATAGTAAA+AGG | - | chr7.3:77825261-77825280 | None:intergenic | 35.0% | |
| CTGAAACAAACCTATGCTTA+TGG | - | chr7.3:77824978-77824997 | None:intergenic | 35.0% | |
| CTTTCCAAGAAGAAGTTCAT+TGG | - | chr7.3:77824507-77824526 | None:intergenic | 35.0% | |
| GAATGAAGTTAGGATCACAA+GGG | + | chr7.3:77824330-77824349 | MS.gene93602:CDS | 35.0% | |
| GATGTTAGGCAATAACTTTG+TGG | - | chr7.3:77824625-77824644 | None:intergenic | 35.0% | |
| GATTGCTGAGAACTTTACAA+AGG | + | chr7.3:77825773-77825792 | MS.gene93602:CDS | 35.0% | |
| GTTGAATTGGCTACAAAGTT+TGG | + | chr7.3:77824748-77824767 | MS.gene93602:CDS | 35.0% | |
| TCCTTGGCAGATATTGTTAA+GGG | + | chr7.3:77826717-77826736 | MS.gene93602:CDS | 35.0% | |
| TCGTCTTCCAATTGAAATCA+CGG | + | chr7.3:77824900-77824919 | MS.gene93602:CDS | 35.0% | |
| TTGTTGCATATAGTCCTCTT+GGG | + | chr7.3:77825724-77825743 | MS.gene93602:CDS | 35.0% | |
| TTTCTTAGGGAACTTGGTAT+TGG | + | chr7.3:77825699-77825718 | MS.gene93602:intron | 35.0% | |
| ! | ATAAGTTATAAGGTGTCAGC+TGG | - | chr7.3:77826367-77826386 | None:intergenic | 35.0% |
| ! | TAAGTTATAAGGTGTCAGCT+GGG | - | chr7.3:77826366-77826385 | None:intergenic | 35.0% |
| ! | TTTGGAGCCAAATATACTGA+TGG | + | chr7.3:77824766-77824785 | MS.gene93602:CDS | 35.0% |
| !! | CTTCCTGTTTAAGTTGTGTT+CGG | - | chr7.3:77826024-77826043 | None:intergenic | 35.0% |
| !!! | AGGTTTTCAGGTTGAAATCT+AGG | - | chr7.3:77826492-77826511 | None:intergenic | 35.0% |
| AATGAACTGGCTGCTAAGAA+GGG | + | chr7.3:77826543-77826562 | MS.gene93602:CDS | 40.0% | |
| ACACCGAACACAACTTAAAC+AGG | + | chr7.3:77826018-77826037 | MS.gene93602:intron | 40.0% | |
| ACCCTTAACAATATCTGCCA+AGG | - | chr7.3:77826721-77826740 | None:intergenic | 40.0% | |
| AGAAGAAGTTCATTGGTGTG+AGG | - | chr7.3:77824500-77824519 | None:intergenic | 40.0% | |
| ATGAGCATGTCTGCTTTCTA+TGG | + | chr7.3:77824383-77824402 | MS.gene93602:CDS | 40.0% | |
| ATTCACCATGCCATACAATC+TGG | + | chr7.3:77824440-77824459 | MS.gene93602:CDS | 40.0% | |
| ATTGTTAAGGGTGACAGAAC+CGG | + | chr7.3:77826729-77826748 | MS.gene93602:CDS | 40.0% | |
| CACACCAATGAACTTCTTCT+TGG | + | chr7.3:77824500-77824519 | MS.gene93602:CDS | 40.0% | |
| CGAACACAACTTAAACAGGA+AGG | + | chr7.3:77826022-77826041 | MS.gene93602:intron | 40.0% | |
| GTATGTGTGAAATTGAGGAC+AGG | + | chr7.3:77824699-77824718 | MS.gene93602:intron | 40.0% | |
| GTCCTTGGCAGATATTGTTA+AGG | + | chr7.3:77826716-77826735 | MS.gene93602:CDS | 40.0% | |
| TAAATCTACGATCAGCTGCA+TGG | + | chr7.3:77825058-77825077 | MS.gene93602:intron | 40.0% | |
| TAATGAACTGGCTGCTAAGA+AGG | + | chr7.3:77826542-77826561 | MS.gene93602:CDS | 40.0% | |
| TCCAATAACAGCTGTGCAAT+TGG | + | chr7.3:77825372-77825391 | MS.gene93602:CDS | 40.0% | |
| TCCAATTGCACAGCTGTTAT+TGG | - | chr7.3:77825376-77825395 | None:intergenic | 40.0% | |
| TCTCATGTTCGGTATTGTGT+TGG | + | chr7.3:77825972-77825991 | MS.gene93602:intron | 40.0% | |
| TCTTCTGATTGTTGAAGCTG+AGG | - | chr7.3:77825338-77825357 | None:intergenic | 40.0% | |
| TGAATGAGAGCAATCATGTC+AGG | - | chr7.3:77824425-77824444 | None:intergenic | 40.0% | |
| ! | ACAGTTTTCCAAGACGAAAG+TGG | - | chr7.3:77826789-77826808 | None:intergenic | 40.0% |
| ! | ATCATGTCAGGTTCAGGTTT+AGG | - | chr7.3:77824413-77824432 | None:intergenic | 40.0% |
| ! | GATGGTACATTTGAGATCTG+TGG | + | chr7.3:77824784-77824803 | MS.gene93602:CDS | 40.0% |
| ! | TGATTCTGCTGTAGGTTTTC+AGG | - | chr7.3:77826504-77826523 | None:intergenic | 40.0% |
| !! | AATTGAGGACAGGCTTTGAA+TGG | + | chr7.3:77824709-77824728 | MS.gene93602:intron | 40.0% |
| !!! | TAGAACATTTTGGGGTGCTA+AGG | - | chr7.3:77826070-77826089 | None:intergenic | 40.0% |
| ACTATGGTCAAGAGATGTGG+AGG | + | chr7.3:77825402-77825421 | MS.gene93602:CDS | 45.0% | |
| AGAGCAATCATGTCAGGTTC+AGG | - | chr7.3:77824419-77824438 | None:intergenic | 45.0% | |
| AGGATATACGGAGATCACCA+CGG | - | chr7.3:77826182-77826201 | None:intergenic | 45.0% | |
| CAAGCTTCTCTCACATAAGC+TGG | - | chr7.3:77824814-77824833 | None:intergenic | 45.0% | |
| CATGCAACCAAGTCCTTGTA+AGG | - | chr7.3:77824366-77824385 | None:intergenic | 45.0% | |
| CATGGTTGTAAAGTCGTTGC+AGG | + | chr7.3:77826254-77826273 | MS.gene93602:intron | 45.0% | |
| CTTCCATGTAGGTTCCTTTC+CGG | - | chr7.3:77826751-77826770 | None:intergenic | 45.0% | |
| GAAAAGAATCCTCTCCCAAG+AGG | - | chr7.3:77825741-77825760 | None:intergenic | 45.0% | |
| GAAGTTAGGATCACAAGGGA+TGG | + | chr7.3:77824334-77824353 | MS.gene93602:CDS | 45.0% | |
| GAATGGAGGAGTTAGAGAGA+AGG | + | chr7.3:77824726-77824745 | MS.gene93602:CDS | 45.0% | |
| GATCAGCTGCATGGTAAAGT+CGG | + | chr7.3:77825067-77825086 | MS.gene93602:intron | 45.0% | |
| GTCACTATGGTCAAGAGATG+TGG | + | chr7.3:77825399-77825418 | MS.gene93602:CDS | 45.0% | |
| GTGTCAGATTCCTTCCATGT+AGG | - | chr7.3:77826762-77826781 | None:intergenic | 45.0% | |
| TAACAGCTGTGCAATTGGAG+TGG | + | chr7.3:77825377-77825396 | MS.gene93602:CDS | 45.0% | |
| TACTCCATCTCAGCTTGCAT+TGG | + | chr7.3:77826569-77826588 | MS.gene93602:CDS | 45.0% | |
| TGACACCAGATTGTATGGCA+TGG | - | chr7.3:77824448-77824467 | None:intergenic | 45.0% | |
| TGACACCGACACATAGACAT+TGG | + | chr7.3:77825913-77825932 | MS.gene93602:intron | 45.0% | |
| TGCAATTGGAGTGGTCACTA+TGG | + | chr7.3:77825386-77825405 | MS.gene93602:CDS | 45.0% | |
| ! | AGCATGCTTTTCCACAAACC+TGG | - | chr7.3:77825809-77825828 | None:intergenic | 45.0% |
| ! | ATGCTTTTCCACAAACCTGG+CGG | - | chr7.3:77825806-77825825 | None:intergenic | 45.0% |
| ! | GAAGTGTCCTTACAAGGACT+TGG | + | chr7.3:77824356-77824375 | MS.gene93602:CDS | 45.0% |
| ! | GGGAGAGGATTCTTTTCATC+AGG | + | chr7.3:77825744-77825763 | MS.gene93602:CDS | 45.0% |
| ! | GTTCTCAACTTTGGTGGTTC+CGG | - | chr7.3:77826634-77826653 | None:intergenic | 45.0% |
| ! | GTTTTCCAAGACGAAAGTGG+TGG | - | chr7.3:77826786-77826805 | None:intergenic | 45.0% |
| ! | TTCTCAACTTTGGTGGTTCC+GGG | - | chr7.3:77826633-77826652 | None:intergenic | 45.0% |
| !! | GTTTGGTGTCAAACACGTGT+TGG | - | chr7.3:77825617-77825636 | None:intergenic | 45.0% |
| !! | ACAAATATAATATTATATTT+AGG | - | chr7.3:77826448-77826467 | None:intergenic | 5.0% |
| ACACTCCACCACTTTCGTCT+TGG | + | chr7.3:77826778-77826797 | MS.gene93602:CDS | 50.0% | |
| CATGCCAATGCAAGCTGAGA+TGG | - | chr7.3:77826576-77826595 | None:intergenic | 50.0% | |
| CGGAAAGGAACCTACATGGA+AGG | + | chr7.3:77826749-77826768 | MS.gene93602:CDS | 50.0% | |
| GAACCGGAAAGGAACCTACA+TGG | + | chr7.3:77826745-77826764 | MS.gene93602:CDS | 50.0% | |
| GCATATAGTCCTCTTGGGAG+AGG | + | chr7.3:77825729-77825748 | MS.gene93602:CDS | 50.0% | |
| TAAGGGTGACAGAACCGGAA+AGG | + | chr7.3:77826734-77826753 | MS.gene93602:CDS | 50.0% | |
| TACAAAGGATGACTACCGCC+AGG | + | chr7.3:77825788-77825807 | MS.gene93602:CDS | 50.0% | |
| TTGGCATGGCTTCATCACCA+AGG | + | chr7.3:77826588-77826607 | MS.gene93602:CDS | 50.0% | |
| ! | ACTTTGGTGGTTCCGGGTAT+CGG | - | chr7.3:77826627-77826646 | None:intergenic | 50.0% |
| ! | CATCTCAGCTTGCATTGGCA+TGG | + | chr7.3:77826574-77826593 | MS.gene93602:CDS | 50.0% |
| !! | GGGATGGAAGTGTCCTTACA+AGG | + | chr7.3:77824350-77824369 | MS.gene93602:CDS | 50.0% |
| !! | GTTCGGTGTGTGACATGTCT+CGG | - | chr7.3:77826007-77826026 | None:intergenic | 50.0% |
| !! | TGAGGACAGGCTTTGAATGG+AGG | + | chr7.3:77824712-77824731 | MS.gene93602:intron | 50.0% |
| GATGACTACCGCCAGGTTTG+TGG | + | chr7.3:77825795-77825814 | MS.gene93602:intron | 55.0% | |
| ! | CTTTGGTGGTTCCGGGTATC+GGG | - | chr7.3:77826626-77826645 | None:intergenic | 55.0% |
| GACGACGTGTGCCCGATACC+CGG | + | chr7.3:77826612-77826631 | MS.gene93602:CDS | 65.0% | |
| TCGGGCACACGTCGTCTCCT+TGG | - | chr7.3:77826608-77826627 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 77824314 | 77826812 | 77824314 | ID=MS.gene93602 |
| chr7.3 | mRNA | 77824314 | 77826812 | 77824314 | ID=MS.gene93602.t1;Parent=MS.gene93602 |
| chr7.3 | exon | 77824314 | 77824526 | 77824314 | ID=MS.gene93602.t1.exon1;Parent=MS.gene93602.t1 |
| chr7.3 | CDS | 77824314 | 77824526 | 77824314 | ID=cds.MS.gene93602.t1;Parent=MS.gene93602.t1 |
| chr7.3 | exon | 77824721 | 77824921 | 77824721 | ID=MS.gene93602.t1.exon2;Parent=MS.gene93602.t1 |
| chr7.3 | CDS | 77824721 | 77824921 | 77824721 | ID=cds.MS.gene93602.t1;Parent=MS.gene93602.t1 |
| chr7.3 | exon | 77825274 | 77825446 | 77825274 | ID=MS.gene93602.t1.exon3;Parent=MS.gene93602.t1 |
| chr7.3 | CDS | 77825274 | 77825446 | 77825274 | ID=cds.MS.gene93602.t1;Parent=MS.gene93602.t1 |
| chr7.3 | exon | 77825707 | 77825809 | 77825707 | ID=MS.gene93602.t1.exon4;Parent=MS.gene93602.t1 |
| chr7.3 | CDS | 77825707 | 77825809 | 77825707 | ID=cds.MS.gene93602.t1;Parent=MS.gene93602.t1 |
| chr7.3 | exon | 77826483 | 77826812 | 77826483 | ID=MS.gene93602.t1.exon5;Parent=MS.gene93602.t1 |
| chr7.3 | CDS | 77826483 | 77826812 | 77826483 | ID=cds.MS.gene93602.t1;Parent=MS.gene93602.t1 |
| Gene Sequence |
| Protein sequence |
