Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43135.t1 | XP_003621701.1 | 95.3 | 339 | 16 | 0 | 1 | 339 | 1 | 339 | 5.40E-188 | 666.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43135.t1 | Q7XT99 | 77.1 | 341 | 73 | 2 | 2 | 337 | 9 | 349 | 5.2e-155 | 548.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43135.t1 | A2Q5B6 | 95.3 | 339 | 16 | 0 | 1 | 339 | 1 | 339 | 3.9e-188 | 666.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43135.t1 | MTR_7g021850 | 95.280 | 339 | 16 | 0 | 1 | 339 | 1 | 339 | 0.0 | 678 |
| MS.gene43135.t1 | MTR_7g021680 | 87.278 | 338 | 41 | 2 | 1 | 337 | 1 | 337 | 0.0 | 619 |
| MS.gene43135.t1 | MTR_7g021820 | 87.278 | 338 | 41 | 2 | 1 | 337 | 1 | 337 | 0.0 | 619 |
| MS.gene43135.t1 | MTR_1g102750 | 57.738 | 336 | 134 | 5 | 4 | 332 | 5 | 339 | 9.81e-136 | 389 |
| MS.gene43135.t1 | MTR_7g114970 | 57.396 | 338 | 136 | 5 | 4 | 334 | 7 | 343 | 1.10e-134 | 387 |
| MS.gene43135.t1 | MTR_7g114980 | 56.973 | 337 | 134 | 5 | 6 | 332 | 13 | 348 | 3.40e-133 | 383 |
| MS.gene43135.t1 | MTR_7g114990 | 56.325 | 332 | 136 | 6 | 7 | 332 | 16 | 344 | 3.22e-132 | 381 |
| MS.gene43135.t1 | MTR_7g114970 | 61.071 | 280 | 106 | 3 | 4 | 281 | 7 | 285 | 5.21e-121 | 350 |
| MS.gene43135.t1 | MTR_1g102750 | 60.638 | 282 | 108 | 3 | 4 | 283 | 5 | 285 | 5.43e-121 | 350 |
| MS.gene43135.t1 | MTR_7g115010 | 52.695 | 334 | 134 | 5 | 7 | 332 | 12 | 329 | 4.05e-120 | 349 |
| MS.gene43135.t1 | MTR_7g114970 | 60.932 | 279 | 106 | 3 | 4 | 280 | 7 | 284 | 5.66e-120 | 347 |
| MS.gene43135.t1 | MTR_7g114980 | 60.142 | 281 | 106 | 3 | 6 | 281 | 13 | 292 | 3.34e-118 | 343 |
| MS.gene43135.t1 | MTR_7g114970 | 60.246 | 244 | 90 | 4 | 94 | 331 | 4 | 246 | 2.91e-99 | 293 |
| MS.gene43135.t1 | MTR_7g021825 | 89.041 | 146 | 16 | 0 | 158 | 303 | 15 | 160 | 3.64e-97 | 285 |
| MS.gene43135.t1 | MTR_7g114970 | 63.402 | 194 | 70 | 1 | 6 | 198 | 9 | 202 | 4.50e-86 | 258 |
| MS.gene43135.t1 | MTR_7g114970 | 59.799 | 199 | 73 | 4 | 139 | 331 | 1 | 198 | 2.10e-76 | 233 |
| MS.gene43135.t1 | MTR_7g021670 | 85.496 | 131 | 18 | 1 | 1 | 131 | 1 | 130 | 5.12e-76 | 234 |
| MS.gene43135.t1 | MTR_7g021670 | 80.734 | 109 | 20 | 1 | 232 | 339 | 145 | 253 | 8.36e-57 | 185 |
| MS.gene43135.t1 | MTR_7g021685 | 89.855 | 69 | 7 | 0 | 1 | 69 | 1 | 69 | 1.25e-39 | 136 |
| MS.gene43135.t1 | MTR_1g102740 | 53.333 | 105 | 44 | 2 | 233 | 332 | 3 | 107 | 2.33e-31 | 114 |
| MS.gene43135.t1 | MTR_3g449790 | 29.446 | 343 | 186 | 11 | 6 | 315 | 37 | 356 | 6.05e-30 | 117 |
| MS.gene43135.t1 | MTR_3g449790 | 28.863 | 343 | 182 | 11 | 6 | 315 | 37 | 350 | 1.24e-29 | 116 |
| MS.gene43135.t1 | MTR_1g042730 | 27.327 | 333 | 191 | 12 | 8 | 296 | 65 | 390 | 4.58e-22 | 96.7 |
| MS.gene43135.t1 | MTR_3g092140 | 27.181 | 298 | 174 | 12 | 38 | 311 | 71 | 349 | 3.55e-21 | 94.7 |
| MS.gene43135.t1 | MTR_1g047250 | 25.857 | 321 | 209 | 10 | 9 | 310 | 6 | 316 | 3.59e-18 | 84.3 |
| MS.gene43135.t1 | MTR_4g092750 | 30.093 | 216 | 137 | 7 | 8 | 214 | 5 | 215 | 1.18e-16 | 79.3 |
| MS.gene43135.t1 | MTR_4g092750 | 30.093 | 216 | 137 | 7 | 8 | 214 | 5 | 215 | 1.44e-16 | 79.7 |
| MS.gene43135.t1 | MTR_4g092750 | 30.093 | 216 | 137 | 7 | 8 | 214 | 5 | 215 | 2.57e-16 | 78.6 |
| MS.gene43135.t1 | MTR_8g088160 | 25.461 | 271 | 153 | 10 | 14 | 239 | 49 | 315 | 4.66e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43135.t1 | AT1G60710 | 75.811 | 339 | 79 | 2 | 4 | 339 | 7 | 345 | 0.0 | 540 |
| MS.gene43135.t1 | AT1G60730 | 75.516 | 339 | 80 | 2 | 4 | 339 | 7 | 345 | 0.0 | 536 |
| MS.gene43135.t1 | AT1G60690 | 74.405 | 336 | 83 | 2 | 4 | 336 | 7 | 342 | 0.0 | 531 |
| MS.gene43135.t1 | AT1G60730 | 71.309 | 359 | 80 | 3 | 4 | 339 | 7 | 365 | 0.0 | 525 |
| MS.gene43135.t1 | AT1G60680 | 74.852 | 338 | 81 | 3 | 4 | 337 | 7 | 344 | 0.0 | 524 |
| MS.gene43135.t1 | AT1G10810 | 70.118 | 338 | 98 | 2 | 4 | 338 | 7 | 344 | 6.18e-178 | 496 |
| MS.gene43135.t1 | AT1G60750 | 71.006 | 338 | 77 | 4 | 4 | 337 | 8 | 328 | 9.17e-175 | 488 |
| MS.gene43135.t1 | AT1G10810 | 69.373 | 271 | 80 | 2 | 71 | 338 | 22 | 292 | 1.44e-138 | 395 |
| MS.gene43135.t1 | AT1G60680 | 78.947 | 228 | 47 | 1 | 4 | 230 | 7 | 234 | 1.75e-130 | 372 |
| MS.gene43135.t1 | AT1G10810 | 73.707 | 232 | 61 | 0 | 4 | 235 | 7 | 238 | 5.76e-123 | 354 |
| MS.gene43135.t1 | AT1G60730 | 74.101 | 139 | 36 | 0 | 4 | 142 | 7 | 145 | 1.60e-71 | 220 |
| MS.gene43135.t1 | AT5G53580 | 30.000 | 290 | 160 | 11 | 46 | 311 | 80 | 350 | 2.61e-25 | 105 |
| MS.gene43135.t1 | AT1G06690 | 28.235 | 340 | 194 | 13 | 6 | 315 | 48 | 367 | 5.93e-25 | 104 |
| MS.gene43135.t1 | AT4G33670 | 26.220 | 328 | 209 | 10 | 1 | 315 | 1 | 308 | 1.10e-22 | 97.1 |
| MS.gene43135.t1 | AT1G04420 | 26.519 | 362 | 212 | 14 | 8 | 325 | 60 | 411 | 1.30e-21 | 95.1 |
| MS.gene43135.t1 | AT1G04690 | 26.861 | 309 | 195 | 10 | 8 | 297 | 5 | 301 | 3.02e-21 | 93.2 |
Find 75 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCAATTGCACAGCTGTTAT+TGG | 0.154954 | 7.2:-77526904 | None:intergenic |
| CTTCCATGTAGGTTCCTTTC+CGG | 0.219280 | 7.2:-77528281 | None:intergenic |
| AAATGTACCATCAGTATATT+TGG | 0.233249 | 7.2:-77526304 | None:intergenic |
| CACACCAATGAACTTCTTCT+TGG | 0.235392 | 7.2:+77526026 | MS.gene43135:CDS |
| GTTCTCAACTTTGGTGGTTC+CGG | 0.259522 | 7.2:-77528164 | None:intergenic |
| AAGAAATAATTCCAACTTGC+AGG | 0.276199 | 7.2:+77526956 | MS.gene43135:CDS |
| AGTTAGAGAGAAGGTTGAAT+TGG | 0.294606 | 7.2:+77526266 | MS.gene43135:CDS |
| GTTGAATTGGCTACAAAGTT+TGG | 0.298080 | 7.2:+77526279 | MS.gene43135:CDS |
| TTCTCAACTTTGGTGGTTCC+GGG | 0.307826 | 7.2:-77528163 | None:intergenic |
| ATGAGCATGTCTGCTTTCTA+TGG | 0.338980 | 7.2:+77525909 | MS.gene43135:CDS |
| TCCAATAACAGCTGTGCAAT+TGG | 0.363190 | 7.2:+77526903 | MS.gene43135:CDS |
| ACTTTGGTGGTTCCGGGTAT+CGG | 0.366436 | 7.2:-77528157 | None:intergenic |
| ATCATGTCAGGTTCAGGTTT+AGG | 0.367686 | 7.2:-77525936 | None:intergenic |
| CATCTAACCGTGATTTCAAT+TGG | 0.369923 | 7.2:-77526438 | None:intergenic |
| TTTCTTAGGGAACTTGGTAT+TGG | 0.374176 | 7.2:+77527232 | MS.gene43135:intron |
| AGAGCAATCATGTCAGGTTC+AGG | 0.397066 | 7.2:-77525942 | None:intergenic |
| CTTTGGTGGTTCCGGGTATC+GGG | 0.407993 | 7.2:-77528156 | None:intergenic |
| TTGATTAAAGTTCTCAACTT+TGG | 0.412299 | 7.2:-77528173 | None:intergenic |
| TAATGAACTGGCTGCTAAGA+AGG | 0.416202 | 7.2:+77528075 | MS.gene43135:CDS |
| GTCCTTGGCAGATATTGTTA+AGG | 0.418905 | 7.2:+77528249 | MS.gene43135:CDS |
| CTTTCCAAGAAGAAGTTCAT+TGG | 0.424932 | 7.2:-77526030 | None:intergenic |
| ATTTGAGAGGGTTAATGAAC+TGG | 0.426318 | 7.2:+77528063 | MS.gene43135:CDS |
| AATAGCAGAAATTGAGTCCT+TGG | 0.430915 | 7.2:+77528234 | MS.gene43135:CDS |
| ATTGTTGCATATAGTCCTCT+TGG | 0.432244 | 7.2:+77527256 | MS.gene43135:CDS |
| AATTGAGGACAGGCTTTGAA+TGG | 0.434369 | 7.2:+77526240 | MS.gene43135:intron |
| AAAAGTGACACCAGATTGTA+TGG | 0.442868 | 7.2:-77525976 | None:intergenic |
| GAATGGAGGAGTTAGAGAGA+AGG | 0.446432 | 7.2:+77526257 | MS.gene43135:CDS |
| CATGCAACCAAGTCCTTGTA+AGG | 0.458876 | 7.2:-77525889 | None:intergenic |
| TCCTTGGCAGATATTGTTAA+GGG | 0.464128 | 7.2:+77528250 | MS.gene43135:CDS |
| ACAGTAGGAAGAATGAAGTT+AGG | 0.469331 | 7.2:+77525846 | MS.gene43135:CDS |
| CAAGCTTCTCTCACAAAAGC+TGG | 0.470939 | 7.2:-77526342 | None:intergenic |
| ATTGTTAAGGGTGACAGAAC+CGG | 0.471059 | 7.2:+77528262 | MS.gene43135:CDS |
| ATACTCCACCACTTTCGTCT+TGG | 0.472897 | 7.2:+77528311 | MS.gene43135:CDS |
| ATTAAAGTTCTCAACTTTGG+TGG | 0.473185 | 7.2:-77528170 | None:intergenic |
| ATTCACCATGCCATACAATC+TGG | 0.483546 | 7.2:+77525966 | MS.gene43135:CDS |
| CATCTCAGCTTGCATTGGCA+TGG | 0.489745 | 7.2:+77528107 | MS.gene43135:CDS |
| ATATAGTCTGATTCTGCTGT+AGG | 0.498584 | 7.2:-77528042 | None:intergenic |
| TGCAATTGGAGTGGTCACTA+TGG | 0.500317 | 7.2:+77526917 | MS.gene43135:CDS |
| TTGTTGCATATAGTCCTCTT+GGG | 0.500832 | 7.2:+77527257 | MS.gene43135:CDS |
| TCGGGCACACGTCGTCTCCT+TGG | 0.501395 | 7.2:-77528138 | None:intergenic |
| CAATGAACTTCTTCTTGGAA+AGG | 0.512113 | 7.2:+77526031 | MS.gene43135:CDS |
| TACTCCATCTCAGCTTGCAT+TGG | 0.515172 | 7.2:+77528102 | MS.gene43135:CDS |
| CATGCCAATGCAAGCTGAGA+TGG | 0.529498 | 7.2:-77528106 | None:intergenic |
| GAAGTGTCCTTACAAGGACT+TGG | 0.532825 | 7.2:+77525882 | MS.gene43135:CDS |
| TCTTCTGATTGTTGAAGCTG+AGG | 0.532875 | 7.2:-77526866 | None:intergenic |
| ACTAAATCAAACCTGCAAGT+TGG | 0.537019 | 7.2:-77526967 | None:intergenic |
| GCATATAGTCCTCTTGGGAG+AGG | 0.543332 | 7.2:+77527262 | MS.gene43135:CDS |
| TGAATGAGAGCAATCATGTC+AGG | 0.558885 | 7.2:-77525948 | None:intergenic |
| TCGTCTTCCAATTGAAATCA+CGG | 0.559511 | 7.2:+77526431 | MS.gene43135:CDS |
| GGCATGGAAGTGTCCTTACA+AGG | 0.559704 | 7.2:+77525876 | MS.gene43135:CDS |
| GAAGTTAGGATCACAAGGCA+TGG | 0.564034 | 7.2:+77525860 | MS.gene43135:CDS |
| TGAGGACAGGCTTTGAATGG+AGG | 0.569130 | 7.2:+77526243 | MS.gene43135:intron |
| GTATCAGATTCCTTCCATGT+AGG | 0.569351 | 7.2:-77528292 | None:intergenic |
| TACAAAGGATGACTACCGCC+AGG | 0.569817 | 7.2:+77527321 | MS.gene43135:CDS |
| GACGACGTGTGCCCGATACC+CGG | 0.570620 | 7.2:+77528145 | MS.gene43135:CDS |
| GAACCGGAAAGGAACCTACA+TGG | 0.581675 | 7.2:+77528278 | MS.gene43135:CDS |
| AGAATCAGACTATATTTGAG+AGG | 0.585843 | 7.2:+77528050 | MS.gene43135:CDS |
| AATGAACTGGCTGCTAAGAA+GGG | 0.592584 | 7.2:+77528076 | MS.gene43135:CDS |
| CTGAGAACAATGGCAACAGT+AGG | 0.598309 | 7.2:+77525831 | None:intergenic |
| GAATCAGACTATATTTGAGA+GGG | 0.604511 | 7.2:+77528051 | MS.gene43135:CDS |
| CGGAAAGGAACCTACATGGA+AGG | 0.604731 | 7.2:+77528282 | MS.gene43135:CDS |
| GAGAACTTTAATCAAAACAT+CGG | 0.608267 | 7.2:+77528181 | MS.gene43135:CDS |
| ACCCTTAACAATATCTGCCA+AGG | 0.610315 | 7.2:-77528251 | None:intergenic |
| ACTATGGTCAAGAGATGTTG+AGG | 0.614034 | 7.2:+77526933 | MS.gene43135:CDS |
| TTTGGAGCCAAATATACTGA+TGG | 0.623125 | 7.2:+77526297 | MS.gene43135:CDS |
| GAAAAGAATCCTCTCCCAAG+AGG | 0.625633 | 7.2:-77527271 | None:intergenic |
| GATTGCTGAGAACTTTACAA+AGG | 0.626430 | 7.2:+77527306 | MS.gene43135:CDS |
| TAAGGGTGACAGAACCGGAA+AGG | 0.631823 | 7.2:+77528267 | MS.gene43135:CDS |
| TTTGTGAGAGAAGCTTGTGA+GGG | 0.633898 | 7.2:+77526348 | MS.gene43135:CDS |
| AGAATGAAGTTAGGATCACA+AGG | 0.646380 | 7.2:+77525855 | MS.gene43135:CDS |
| TAACAGCTGTGCAATTGGAG+TGG | 0.661184 | 7.2:+77526908 | MS.gene43135:CDS |
| AGAAGAAGTTCATTGGTGTG+AGG | 0.680165 | 7.2:-77526023 | None:intergenic |
| TTGGCATGGCTTCATCACCA+AGG | 0.693380 | 7.2:+77528121 | MS.gene43135:CDS |
| TGACACCAGATTGTATGGCA+TGG | 0.709987 | 7.2:-77525971 | None:intergenic |
| GATGGTACATTTGAGATCTG+TGG | 0.711076 | 7.2:+77526315 | MS.gene43135:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGACTATAAAATTTTATATT+AGG | - | chr7.2:77526076-77526095 | None:intergenic | 10.0% |
| !!! | TTATGATTTTTTTTTTCTTA+GGG | + | chr7.2:77527219-77527238 | MS.gene43135:intron | 10.0% |
| !! | AAGCATGAATAATTATTAAT+AGG | - | chr7.2:77527658-77527677 | None:intergenic | 15.0% |
| !! | ATTTACCTAAAATTAATGTT+TGG | + | chr7.2:77526565-77526584 | MS.gene43135:intron | 15.0% |
| !! | TATAAAAATGTGTTTCAATA+TGG | - | chr7.2:77526546-77526565 | None:intergenic | 15.0% |
| !!! | AAAATAAGCATTTTTTTTGA+AGG | - | chr7.2:77527692-77527711 | None:intergenic | 15.0% |
| !!! | AAAATTCTTTGATTTGATTT+TGG | + | chr7.2:77526467-77526486 | MS.gene43135:intron | 15.0% |
| !!! | ACATTGATTAATAAGTTATA+AGG | - | chr7.2:77527910-77527929 | None:intergenic | 15.0% |
| !!! | GTTATGATTTTTTTTTTCTT+AGG | + | chr7.2:77527218-77527237 | MS.gene43135:intron | 15.0% |
| !!! | TAGTTAAAATAGAACATTTT+GGG | - | chr7.2:77527612-77527631 | None:intergenic | 15.0% |
| !!! | TTTATCCAAACATTAATTTT+AGG | - | chr7.2:77526573-77526592 | None:intergenic | 15.0% |
| !! | AAAAAAAATCATAACTCATG+AGG | - | chr7.2:77527213-77527232 | None:intergenic | 20.0% |
| !! | ACGATTGTAATTTAAGAAAA+TGG | + | chr7.2:77527076-77527095 | MS.gene43135:intron | 20.0% |
| !! | ATAGATTTCATTCAAGATAA+GGG | + | chr7.2:77526623-77526642 | MS.gene43135:intron | 20.0% |
| !! | ATCTATATAGTTCATATCAA+AGG | + | chr7.2:77527818-77527837 | MS.gene43135:intron | 20.0% |
| !! | TATAGATTTCATTCAAGATA+AGG | + | chr7.2:77526622-77526641 | MS.gene43135:intron | 20.0% |
| !! | TTAAAATTGCAATGATATGA+AGG | + | chr7.2:77527039-77527058 | MS.gene43135:intron | 20.0% |
| !! | TTATTAATCAATGTACATCA+GGG | + | chr7.2:77527916-77527935 | MS.gene43135:intron | 20.0% |
| !!! | AGTTAAAATAGAACATTTTG+GGG | - | chr7.2:77527611-77527630 | None:intergenic | 20.0% |
| !!! | CAATCTAAGATATATATAAC+TGG | + | chr7.2:77526740-77526759 | MS.gene43135:intron | 20.0% |
| !!! | CTAGTTAAAATAGAACATTT+TGG | - | chr7.2:77527613-77527632 | None:intergenic | 20.0% |
| !!! | TAATTAATGCTATTTTAGGA+AGG | - | chr7.2:77526684-77526703 | None:intergenic | 20.0% |
| ! | AAATGTACCATCAGTATATT+TGG | - | chr7.2:77526307-77526326 | None:intergenic | 25.0% |
| ! | AACTAACAAGTATGAAATAC+TGG | + | chr7.2:77527409-77527428 | MS.gene43135:intron | 25.0% |
| ! | ATAGTTGTAAAACAGATATC+TGG | - | chr7.2:77526710-77526729 | None:intergenic | 25.0% |
| ! | CTTAAAAAACTAGTTGAAGA+GGG | + | chr7.2:77526814-77526833 | MS.gene43135:CDS | 25.0% |
| ! | CTTATTAATCAATGTACATC+AGG | + | chr7.2:77527915-77527934 | MS.gene43135:intron | 25.0% |
| ! | GAGAACTTTAATCAAAACAT+CGG | + | chr7.2:77528181-77528200 | MS.gene43135:CDS | 25.0% |
| ! | GAGGGAAAAATAAAATACAT+TGG | + | chr7.2:77526832-77526851 | MS.gene43135:CDS | 25.0% |
| ! | TTGAATGTACTTACAAGTAT+TGG | + | chr7.2:77527105-77527124 | MS.gene43135:intron | 25.0% |
| ! | TTGATTAAAGTTCTCAACTT+TGG | - | chr7.2:77528176-77528195 | None:intergenic | 25.0% |
| !!! | AAAAAAATGCTTATTTTCCG+TGG | + | chr7.2:77527695-77527714 | MS.gene43135:intron | 25.0% |
| !!! | GTGCTAATTAATGCTATTTT+AGG | - | chr7.2:77526688-77526707 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTCTTAGGGAACT+TGG | + | chr7.2:77527226-77527245 | MS.gene43135:intron | 25.0% |
| AAAACATGTATGGTATAGTG+AGG | - | chr7.2:77527735-77527754 | None:intergenic | 30.0% | |
| AAATTGAGTACCATAAGCAT+AGG | + | chr7.2:77526496-77526515 | MS.gene43135:intron | 30.0% | |
| AAGAAATAATTCCAACTTGC+AGG | + | chr7.2:77526956-77526975 | MS.gene43135:CDS | 30.0% | |
| AGAATCAGACTATATTTGAG+AGG | + | chr7.2:77528050-77528069 | MS.gene43135:CDS | 30.0% | |
| ATTAAAGTTCTCAACTTTGG+TGG | - | chr7.2:77528173-77528192 | None:intergenic | 30.0% | |
| ATTATATTTAGGCATCAGTG+AGG | - | chr7.2:77527970-77527989 | None:intergenic | 30.0% | |
| ATTGAATGCAATCTCATGTT+CGG | + | chr7.2:77527494-77527513 | MS.gene43135:intron | 30.0% | |
| ATTTCTACTACGCTATGTAA+AGG | - | chr7.2:77526198-77526217 | None:intergenic | 30.0% | |
| CCCAATCTTACATAGTAAAA+GGG | - | chr7.2:77526791-77526810 | None:intergenic | 30.0% | |
| GAATCAGACTATATTTGAGA+GGG | + | chr7.2:77528051-77528070 | MS.gene43135:CDS | 30.0% | |
| GCTTAAAAAACTAGTTGAAG+AGG | + | chr7.2:77526813-77526832 | MS.gene43135:CDS | 30.0% | |
| TATGGTATAGTGAGGATATA+CGG | - | chr7.2:77527727-77527746 | None:intergenic | 30.0% | |
| TATTACCAATGTCTATGTGT+CGG | - | chr7.2:77527454-77527473 | None:intergenic | 30.0% | |
| TATTAGGAGTTAAGAGAAAG+TGG | - | chr7.2:77526060-77526079 | None:intergenic | 30.0% | |
| TTGTGGTTTCAAAACATGTA+TGG | - | chr7.2:77527745-77527764 | None:intergenic | 30.0% | |
| ! | CCCTTTTACTATGTAAGATT+GGG | + | chr7.2:77526788-77526807 | MS.gene43135:intron | 30.0% |
| ! | CCTTTTACTATGTAAGATTG+GGG | + | chr7.2:77526789-77526808 | MS.gene43135:intron | 30.0% |
| ! | CTTGATACTTCTGACTTTTA+TGG | + | chr7.2:77525999-77526018 | MS.gene43135:CDS | 30.0% |
| ! | TCCCTTTTACTATGTAAGAT+TGG | + | chr7.2:77526787-77526806 | MS.gene43135:intron | 30.0% |
| !!! | AGCATTTTTTTTGAAGGACA+CGG | - | chr7.2:77527686-77527705 | None:intergenic | 30.0% |
| AAAAGTGACACCAGATTGTA+TGG | - | chr7.2:77525979-77525998 | None:intergenic | 35.0% | |
| AAACACACGTCTTTAATCGT+TGG | + | chr7.2:77527164-77527183 | MS.gene43135:intron | 35.0% | |
| AAATCACTTAGCTCGATGTT+AGG | - | chr7.2:77526170-77526189 | None:intergenic | 35.0% | |
| AACGATTAAAGACGTGTGTT+TGG | - | chr7.2:77527165-77527184 | None:intergenic | 35.0% | |
| AATAGCAGAAATTGAGTCCT+TGG | + | chr7.2:77528234-77528253 | MS.gene43135:CDS | 35.0% | |
| AATGTGTCTGTGTGAAATTG+AGG | + | chr7.2:77526225-77526244 | MS.gene43135:intron | 35.0% | |
| ACAGTAGGAAGAATGAAGTT+AGG | + | chr7.2:77525846-77525865 | MS.gene43135:CDS | 35.0% | |
| ACTAAATCAAACCTGCAAGT+TGG | - | chr7.2:77526970-77526989 | None:intergenic | 35.0% | |
| AGAATGAAGTTAGGATCACA+AGG | + | chr7.2:77525855-77525874 | MS.gene43135:CDS | 35.0% | |
| AGATCAAACTATGTGTAGCA+TGG | + | chr7.2:77527769-77527788 | MS.gene43135:intron | 35.0% | |
| AGTTAGAGAGAAGGTTGAAT+TGG | + | chr7.2:77526266-77526285 | MS.gene43135:CDS | 35.0% | |
| ATATAGTCTGATTCTGCTGT+AGG | - | chr7.2:77528045-77528064 | None:intergenic | 35.0% | |
| ATTGTTGCATATAGTCCTCT+TGG | + | chr7.2:77527256-77527275 | MS.gene43135:CDS | 35.0% | |
| ATTTGAGAGGGTTAATGAAC+TGG | + | chr7.2:77528063-77528082 | MS.gene43135:CDS | 35.0% | |
| CAATGAACTTCTTCTTGGAA+AGG | + | chr7.2:77526031-77526050 | MS.gene43135:CDS | 35.0% | |
| CATAGTTTGATCTGATCTTG+TGG | - | chr7.2:77527762-77527781 | None:intergenic | 35.0% | |
| CATCTAACCGTGATTTCAAT+TGG | - | chr7.2:77526441-77526460 | None:intergenic | 35.0% | |
| CCCCAATCTTACATAGTAAA+AGG | - | chr7.2:77526792-77526811 | None:intergenic | 35.0% | |
| CTGAAACAAACCTATGCTTA+TGG | - | chr7.2:77526509-77526528 | None:intergenic | 35.0% | |
| CTTTCCAAGAAGAAGTTCAT+TGG | - | chr7.2:77526033-77526052 | None:intergenic | 35.0% | |
| GATTGCTGAGAACTTTACAA+AGG | + | chr7.2:77527306-77527325 | MS.gene43135:CDS | 35.0% | |
| GTTGAATTGGCTACAAAGTT+TGG | + | chr7.2:77526279-77526298 | MS.gene43135:CDS | 35.0% | |
| TCCTTGGCAGATATTGTTAA+GGG | + | chr7.2:77528250-77528269 | MS.gene43135:CDS | 35.0% | |
| TCGTCTTCCAATTGAAATCA+CGG | + | chr7.2:77526431-77526450 | MS.gene43135:CDS | 35.0% | |
| TTATCTAGCATTTCTCTCTG+TGG | + | chr7.2:77527009-77527028 | MS.gene43135:intron | 35.0% | |
| TTGTTGCATATAGTCCTCTT+GGG | + | chr7.2:77527257-77527276 | MS.gene43135:CDS | 35.0% | |
| TTTCTTAGGGAACTTGGTAT+TGG | + | chr7.2:77527232-77527251 | MS.gene43135:intron | 35.0% | |
| ! | ATAAGTTATAAGGTGTCAGC+TGG | - | chr7.2:77527900-77527919 | None:intergenic | 35.0% |
| ! | TAAGTTATAAGGTGTCAGCT+GGG | - | chr7.2:77527899-77527918 | None:intergenic | 35.0% |
| ! | TTTGGAGCCAAATATACTGA+TGG | + | chr7.2:77526297-77526316 | MS.gene43135:CDS | 35.0% |
| !! | CTTCCTGTTTAAGTTGTGTT+CGG | - | chr7.2:77527557-77527576 | None:intergenic | 35.0% |
| !!! | AGGTTTTCAGGTTGAAATCT+AGG | - | chr7.2:77528025-77528044 | None:intergenic | 35.0% |
| AATGAACTGGCTGCTAAGAA+GGG | + | chr7.2:77528076-77528095 | MS.gene43135:CDS | 40.0% | |
| ACACCGAACACAACTTAAAC+AGG | + | chr7.2:77527551-77527570 | MS.gene43135:intron | 40.0% | |
| ACCCTTAACAATATCTGCCA+AGG | - | chr7.2:77528254-77528273 | None:intergenic | 40.0% | |
| ACTATGGTCAAGAGATGTTG+AGG | + | chr7.2:77526933-77526952 | MS.gene43135:CDS | 40.0% | |
| AGAAGAAGTTCATTGGTGTG+AGG | - | chr7.2:77526026-77526045 | None:intergenic | 40.0% | |
| ATGAGCATGTCTGCTTTCTA+TGG | + | chr7.2:77525909-77525928 | MS.gene43135:CDS | 40.0% | |
| ATTCACCATGCCATACAATC+TGG | + | chr7.2:77525966-77525985 | MS.gene43135:CDS | 40.0% | |
| ATTGTTAAGGGTGACAGAAC+CGG | + | chr7.2:77528262-77528281 | MS.gene43135:CDS | 40.0% | |
| CACACCAATGAACTTCTTCT+TGG | + | chr7.2:77526026-77526045 | MS.gene43135:CDS | 40.0% | |
| CGAACACAACTTAAACAGGA+AGG | + | chr7.2:77527555-77527574 | MS.gene43135:intron | 40.0% | |
| GTATCAGATTCCTTCCATGT+AGG | - | chr7.2:77528295-77528314 | None:intergenic | 40.0% | |
| GTCCTTGGCAGATATTGTTA+AGG | + | chr7.2:77528249-77528268 | MS.gene43135:CDS | 40.0% | |
| TAAATCTACGATCAGCTGCA+TGG | + | chr7.2:77526589-77526608 | MS.gene43135:intron | 40.0% | |
| TAATGAACTGGCTGCTAAGA+AGG | + | chr7.2:77528075-77528094 | MS.gene43135:CDS | 40.0% | |
| TCCAATAACAGCTGTGCAAT+TGG | + | chr7.2:77526903-77526922 | MS.gene43135:CDS | 40.0% | |
| TCCAATTGCACAGCTGTTAT+TGG | - | chr7.2:77526907-77526926 | None:intergenic | 40.0% | |
| TCTCATGTTCGGTATTGTGT+TGG | + | chr7.2:77527505-77527524 | MS.gene43135:intron | 40.0% | |
| TCTTCTGATTGTTGAAGCTG+AGG | - | chr7.2:77526869-77526888 | None:intergenic | 40.0% | |
| TGAATGAGAGCAATCATGTC+AGG | - | chr7.2:77525951-77525970 | None:intergenic | 40.0% | |
| TTTGTGAGAGAAGCTTGTGA+GGG | + | chr7.2:77526348-77526367 | MS.gene43135:CDS | 40.0% | |
| ! | ATCATGTCAGGTTCAGGTTT+AGG | - | chr7.2:77525939-77525958 | None:intergenic | 40.0% |
| ! | GATGGTACATTTGAGATCTG+TGG | + | chr7.2:77526315-77526334 | MS.gene43135:CDS | 40.0% |
| ! | TGATTCTGCTGTAGGTTTTC+AGG | - | chr7.2:77528037-77528056 | None:intergenic | 40.0% |
| ! | TTTTGTGAGAGAAGCTTGTG+AGG | + | chr7.2:77526347-77526366 | MS.gene43135:CDS | 40.0% |
| !! | AATTGAGGACAGGCTTTGAA+TGG | + | chr7.2:77526240-77526259 | MS.gene43135:intron | 40.0% |
| !!! | TAGAACATTTTGGGGTGCTA+AGG | - | chr7.2:77527603-77527622 | None:intergenic | 40.0% |
| AGAGCAATCATGTCAGGTTC+AGG | - | chr7.2:77525945-77525964 | None:intergenic | 45.0% | |
| AGGATATACGGAGATCACCA+CGG | - | chr7.2:77527715-77527734 | None:intergenic | 45.0% | |
| ATACTCCACCACTTTCGTCT+TGG | + | chr7.2:77528311-77528330 | MS.gene43135:CDS | 45.0% | |
| CAAGCTTCTCTCACAAAAGC+TGG | - | chr7.2:77526345-77526364 | None:intergenic | 45.0% | |
| CATGCAACCAAGTCCTTGTA+AGG | - | chr7.2:77525892-77525911 | None:intergenic | 45.0% | |
| CATGGTTGTAAAGTCGTTGC+AGG | + | chr7.2:77527787-77527806 | MS.gene43135:intron | 45.0% | |
| CTTCCATGTAGGTTCCTTTC+CGG | - | chr7.2:77528284-77528303 | None:intergenic | 45.0% | |
| GAAAAGAATCCTCTCCCAAG+AGG | - | chr7.2:77527274-77527293 | None:intergenic | 45.0% | |
| GAAGTTAGGATCACAAGGCA+TGG | + | chr7.2:77525860-77525879 | MS.gene43135:CDS | 45.0% | |
| GAATGGAGGAGTTAGAGAGA+AGG | + | chr7.2:77526257-77526276 | MS.gene43135:CDS | 45.0% | |
| GATCAGCTGCATGGTAAAGT+CGG | + | chr7.2:77526598-77526617 | MS.gene43135:intron | 45.0% | |
| GTCTGTGTGAAATTGAGGAC+AGG | + | chr7.2:77526230-77526249 | MS.gene43135:intron | 45.0% | |
| TAACAGCTGTGCAATTGGAG+TGG | + | chr7.2:77526908-77526927 | MS.gene43135:CDS | 45.0% | |
| TACTCCATCTCAGCTTGCAT+TGG | + | chr7.2:77528102-77528121 | MS.gene43135:CDS | 45.0% | |
| TGACACCAGATTGTATGGCA+TGG | - | chr7.2:77525974-77525993 | None:intergenic | 45.0% | |
| TGACACCGACACATAGACAT+TGG | + | chr7.2:77527446-77527465 | MS.gene43135:intron | 45.0% | |
| TGCAATTGGAGTGGTCACTA+TGG | + | chr7.2:77526917-77526936 | MS.gene43135:CDS | 45.0% | |
| ! | AGCATGCTTTTCCACAAACC+TGG | - | chr7.2:77527342-77527361 | None:intergenic | 45.0% |
| ! | ATGCTTTTCCACAAACCTGG+CGG | - | chr7.2:77527339-77527358 | None:intergenic | 45.0% |
| ! | GAAGTGTCCTTACAAGGACT+TGG | + | chr7.2:77525882-77525901 | MS.gene43135:CDS | 45.0% |
| ! | GCAGTTTTCCAAGACGAAAG+TGG | - | chr7.2:77528322-77528341 | None:intergenic | 45.0% |
| ! | GGGAGAGGATTCTTTTCATC+AGG | + | chr7.2:77527277-77527296 | MS.gene43135:CDS | 45.0% |
| ! | GTTCTCAACTTTGGTGGTTC+CGG | - | chr7.2:77528167-77528186 | None:intergenic | 45.0% |
| ! | GTTTTCCAAGACGAAAGTGG+TGG | - | chr7.2:77528319-77528338 | None:intergenic | 45.0% |
| ! | TTCTCAACTTTGGTGGTTCC+GGG | - | chr7.2:77528166-77528185 | None:intergenic | 45.0% |
| !! | CTTTAATCGTTGGTGCTGCA+TGG | + | chr7.2:77527174-77527193 | MS.gene43135:intron | 45.0% |
| !! | GTTTGGTGTCAAACACGTGT+TGG | - | chr7.2:77527148-77527167 | None:intergenic | 45.0% |
| !! | ACAAATATAATATTATATTT+AGG | - | chr7.2:77527981-77528000 | None:intergenic | 5.0% |
| CATGCCAATGCAAGCTGAGA+TGG | - | chr7.2:77528109-77528128 | None:intergenic | 50.0% | |
| CGGAAAGGAACCTACATGGA+AGG | + | chr7.2:77528282-77528301 | MS.gene43135:CDS | 50.0% | |
| GAACCGGAAAGGAACCTACA+TGG | + | chr7.2:77528278-77528297 | MS.gene43135:CDS | 50.0% | |
| GCATATAGTCCTCTTGGGAG+AGG | + | chr7.2:77527262-77527281 | MS.gene43135:CDS | 50.0% | |
| TAAGGGTGACAGAACCGGAA+AGG | + | chr7.2:77528267-77528286 | MS.gene43135:CDS | 50.0% | |
| TACAAAGGATGACTACCGCC+AGG | + | chr7.2:77527321-77527340 | MS.gene43135:CDS | 50.0% | |
| TTGGCATGGCTTCATCACCA+AGG | + | chr7.2:77528121-77528140 | MS.gene43135:CDS | 50.0% | |
| ! | ACTTTGGTGGTTCCGGGTAT+CGG | - | chr7.2:77528160-77528179 | None:intergenic | 50.0% |
| ! | CATCTCAGCTTGCATTGGCA+TGG | + | chr7.2:77528107-77528126 | MS.gene43135:CDS | 50.0% |
| !! | GGCATGGAAGTGTCCTTACA+AGG | + | chr7.2:77525876-77525895 | MS.gene43135:CDS | 50.0% |
| !! | GTTCGGTGTGTGACATGTCT+CGG | - | chr7.2:77527540-77527559 | None:intergenic | 50.0% |
| !! | TGAGGACAGGCTTTGAATGG+AGG | + | chr7.2:77526243-77526262 | MS.gene43135:intron | 50.0% |
| GATGACTACCGCCAGGTTTG+TGG | + | chr7.2:77527328-77527347 | MS.gene43135:intron | 55.0% | |
| ! | CTTTGGTGGTTCCGGGTATC+GGG | - | chr7.2:77528159-77528178 | None:intergenic | 55.0% |
| GACGACGTGTGCCCGATACC+CGG | + | chr7.2:77528145-77528164 | MS.gene43135:CDS | 65.0% | |
| TCGGGCACACGTCGTCTCCT+TGG | - | chr7.2:77528141-77528160 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 77525840 | 77528345 | 77525840 | ID=MS.gene43135 |
| chr7.2 | mRNA | 77525840 | 77528345 | 77525840 | ID=MS.gene43135.t1;Parent=MS.gene43135 |
| chr7.2 | exon | 77525840 | 77526052 | 77525840 | ID=MS.gene43135.t1.exon1;Parent=MS.gene43135.t1 |
| chr7.2 | CDS | 77525840 | 77526052 | 77525840 | ID=cds.MS.gene43135.t1;Parent=MS.gene43135.t1 |
| chr7.2 | exon | 77526252 | 77526452 | 77526252 | ID=MS.gene43135.t1.exon2;Parent=MS.gene43135.t1 |
| chr7.2 | CDS | 77526252 | 77526452 | 77526252 | ID=cds.MS.gene43135.t1;Parent=MS.gene43135.t1 |
| chr7.2 | exon | 77526805 | 77526977 | 77526805 | ID=MS.gene43135.t1.exon3;Parent=MS.gene43135.t1 |
| chr7.2 | CDS | 77526805 | 77526977 | 77526805 | ID=cds.MS.gene43135.t1;Parent=MS.gene43135.t1 |
| chr7.2 | exon | 77527240 | 77527342 | 77527240 | ID=MS.gene43135.t1.exon4;Parent=MS.gene43135.t1 |
| chr7.2 | CDS | 77527240 | 77527342 | 77527240 | ID=cds.MS.gene43135.t1;Parent=MS.gene43135.t1 |
| chr7.2 | exon | 77528016 | 77528345 | 77528016 | ID=MS.gene43135.t1.exon5;Parent=MS.gene43135.t1 |
| chr7.2 | CDS | 77528016 | 77528345 | 77528016 | ID=cds.MS.gene43135.t1;Parent=MS.gene43135.t1 |
| Gene Sequence |
| Protein sequence |
