Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93600.t1 | XP_003621701.1 | 93.8 | 338 | 20 | 1 | 1 | 338 | 1 | 337 | 1.40E-180 | 642.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93600.t1 | Q7XT99 | 78.3 | 341 | 70 | 2 | 3 | 339 | 10 | 350 | 1.6e-156 | 553.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93600.t1 | A2Q5B6 | 93.8 | 338 | 20 | 1 | 1 | 338 | 1 | 337 | 1.0e-180 | 642.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93600.t1 | MTR_7g021850 | 93.787 | 338 | 20 | 1 | 1 | 338 | 1 | 337 | 0.0 | 654 |
| MS.gene93600.t1 | MTR_7g021680 | 89.706 | 340 | 34 | 1 | 1 | 340 | 1 | 339 | 0.0 | 639 |
| MS.gene93600.t1 | MTR_7g021820 | 89.706 | 340 | 34 | 1 | 1 | 340 | 1 | 339 | 0.0 | 639 |
| MS.gene93600.t1 | MTR_1g102750 | 59.821 | 336 | 128 | 5 | 4 | 333 | 5 | 339 | 1.16e-139 | 399 |
| MS.gene93600.t1 | MTR_7g114980 | 58.457 | 337 | 130 | 5 | 6 | 333 | 13 | 348 | 5.91e-138 | 395 |
| MS.gene93600.t1 | MTR_7g114990 | 57.612 | 335 | 134 | 5 | 7 | 336 | 16 | 347 | 7.60e-138 | 395 |
| MS.gene93600.t1 | MTR_7g114970 | 56.213 | 338 | 141 | 5 | 4 | 335 | 7 | 343 | 7.50e-132 | 380 |
| MS.gene93600.t1 | MTR_7g115010 | 53.731 | 335 | 132 | 5 | 6 | 333 | 11 | 329 | 1.59e-126 | 366 |
| MS.gene93600.t1 | MTR_1g102750 | 62.411 | 282 | 103 | 3 | 4 | 283 | 5 | 285 | 1.17e-123 | 357 |
| MS.gene93600.t1 | MTR_7g114980 | 61.210 | 281 | 103 | 3 | 6 | 281 | 13 | 292 | 1.94e-120 | 349 |
| MS.gene93600.t1 | MTR_7g114970 | 60.714 | 280 | 107 | 3 | 4 | 281 | 7 | 285 | 3.03e-120 | 348 |
| MS.gene93600.t1 | MTR_7g114970 | 60.573 | 279 | 107 | 3 | 4 | 280 | 7 | 284 | 2.38e-119 | 346 |
| MS.gene93600.t1 | MTR_7g021825 | 90.411 | 146 | 14 | 0 | 158 | 303 | 15 | 160 | 3.16e-98 | 287 |
| MS.gene93600.t1 | MTR_7g114970 | 58.300 | 247 | 97 | 4 | 94 | 335 | 4 | 249 | 1.73e-96 | 286 |
| MS.gene93600.t1 | MTR_7g114970 | 63.402 | 194 | 70 | 1 | 6 | 198 | 9 | 202 | 1.72e-85 | 256 |
| MS.gene93600.t1 | MTR_7g114970 | 57.426 | 202 | 80 | 4 | 139 | 335 | 1 | 201 | 2.98e-74 | 228 |
| MS.gene93600.t1 | MTR_7g021670 | 83.206 | 131 | 21 | 1 | 1 | 131 | 1 | 130 | 5.94e-73 | 226 |
| MS.gene93600.t1 | MTR_7g021670 | 87.963 | 108 | 13 | 0 | 232 | 339 | 145 | 252 | 9.26e-64 | 203 |
| MS.gene93600.t1 | MTR_7g021685 | 86.957 | 69 | 9 | 0 | 1 | 69 | 1 | 69 | 1.01e-38 | 134 |
| MS.gene93600.t1 | MTR_3g449790 | 29.885 | 348 | 188 | 11 | 1 | 315 | 32 | 356 | 1.26e-31 | 122 |
| MS.gene93600.t1 | MTR_1g102740 | 51.852 | 108 | 42 | 2 | 233 | 333 | 3 | 107 | 1.81e-31 | 114 |
| MS.gene93600.t1 | MTR_3g449790 | 29.310 | 348 | 184 | 11 | 1 | 315 | 32 | 350 | 2.12e-31 | 121 |
| MS.gene93600.t1 | MTR_1g042730 | 27.143 | 350 | 201 | 14 | 8 | 310 | 65 | 407 | 2.37e-23 | 100 |
| MS.gene93600.t1 | MTR_3g092140 | 27.946 | 297 | 177 | 11 | 36 | 311 | 69 | 349 | 3.81e-23 | 100 |
| MS.gene93600.t1 | MTR_1g047250 | 27.077 | 325 | 206 | 12 | 9 | 313 | 6 | 319 | 7.14e-20 | 89.4 |
| MS.gene93600.t1 | MTR_4g092750 | 31.019 | 216 | 135 | 7 | 8 | 214 | 5 | 215 | 4.67e-17 | 80.5 |
| MS.gene93600.t1 | MTR_4g092750 | 31.019 | 216 | 135 | 7 | 8 | 214 | 5 | 215 | 5.21e-17 | 80.9 |
| MS.gene93600.t1 | MTR_4g092750 | 31.019 | 216 | 135 | 7 | 8 | 214 | 5 | 215 | 9.79e-17 | 79.7 |
| MS.gene93600.t1 | MTR_8g088160 | 25.735 | 272 | 151 | 11 | 14 | 239 | 49 | 315 | 2.53e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93600.t1 | AT1G60710 | 77.811 | 338 | 73 | 1 | 4 | 339 | 7 | 344 | 0.0 | 550 |
| MS.gene93600.t1 | AT1G60730 | 77.811 | 338 | 73 | 1 | 4 | 339 | 7 | 344 | 0.0 | 547 |
| MS.gene93600.t1 | AT1G60690 | 76.401 | 339 | 78 | 1 | 4 | 340 | 7 | 345 | 0.0 | 546 |
| MS.gene93600.t1 | AT1G60680 | 75.811 | 339 | 79 | 2 | 4 | 339 | 7 | 345 | 0.0 | 536 |
| MS.gene93600.t1 | AT1G60730 | 73.464 | 358 | 73 | 2 | 4 | 339 | 7 | 364 | 0.0 | 535 |
| MS.gene93600.t1 | AT1G10810 | 71.765 | 340 | 94 | 1 | 2 | 339 | 5 | 344 | 0.0 | 508 |
| MS.gene93600.t1 | AT1G60750 | 72.566 | 339 | 73 | 3 | 4 | 339 | 8 | 329 | 8.74e-179 | 498 |
| MS.gene93600.t1 | AT1G10810 | 71.956 | 271 | 74 | 1 | 71 | 339 | 22 | 292 | 2.01e-144 | 410 |
| MS.gene93600.t1 | AT1G60680 | 79.386 | 228 | 46 | 1 | 4 | 230 | 7 | 234 | 7.46e-132 | 376 |
| MS.gene93600.t1 | AT1G10810 | 73.932 | 234 | 61 | 0 | 2 | 235 | 5 | 238 | 3.68e-124 | 357 |
| MS.gene93600.t1 | AT1G60730 | 76.259 | 139 | 33 | 0 | 4 | 142 | 7 | 145 | 5.81e-73 | 224 |
| MS.gene93600.t1 | AT1G06690 | 29.819 | 332 | 199 | 11 | 6 | 315 | 48 | 367 | 1.15e-26 | 108 |
| MS.gene93600.t1 | AT5G53580 | 30.000 | 290 | 160 | 11 | 46 | 311 | 80 | 350 | 4.67e-26 | 107 |
| MS.gene93600.t1 | AT1G04690 | 27.987 | 318 | 180 | 11 | 8 | 297 | 5 | 301 | 2.48e-24 | 101 |
| MS.gene93600.t1 | AT1G04420 | 26.479 | 355 | 207 | 14 | 8 | 315 | 60 | 407 | 1.86e-23 | 100 |
| MS.gene93600.t1 | AT4G33670 | 26.829 | 328 | 207 | 10 | 1 | 315 | 1 | 308 | 3.33e-23 | 98.6 |
| MS.gene93600.t1 | AT2G37790 | 25.723 | 311 | 166 | 14 | 43 | 328 | 35 | 305 | 2.25e-12 | 67.4 |
Find 78 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGATTAAAGTTCTCAATTT+TGG | 0.142629 | 7.3:-77816236 | None:intergenic |
| AAATTTCCCTTCAATATATT+TGG | 0.148190 | 7.3:-77814590 | None:intergenic |
| TCCAATTGCACAGCTGTTAT+TGG | 0.154954 | 7.3:-77815247 | None:intergenic |
| AAGAAATAATTCCAACTTGC+AGG | 0.276199 | 7.3:+77815299 | MS.gene93600:CDS |
| CTTGATACCTCTGACATCTA+TGG | 0.288925 | 7.3:+77814308 | MS.gene93600:CDS |
| ATACTCCACCACCCTCTTCT+TGG | 0.296430 | 7.3:+77816377 | MS.gene93600:CDS |
| GTTGAATTGGCTACAAAGTT+TGG | 0.298080 | 7.3:+77814565 | MS.gene93600:CDS |
| GAAGGGAAATTTGAGATCTT+TGG | 0.300695 | 7.3:+77814601 | MS.gene93600:CDS |
| AGTGAGAGAGAAGGTTGAAT+TGG | 0.360017 | 7.3:+77814552 | MS.gene93600:CDS |
| AATCAAACCGTGATTTCAAT+TGG | 0.361716 | 7.3:-77814724 | None:intergenic |
| TCCAATAACAGCTGTGCAAT+TGG | 0.363190 | 7.3:+77815246 | MS.gene93600:CDS |
| ATCATGTCAGGTTCAGGTTT+AGG | 0.367686 | 7.3:-77814245 | None:intergenic |
| TTTCTTAGGGAACTTGGTAT+TGG | 0.374176 | 7.3:+77815575 | MS.gene93600:intron |
| GCTGTCAAGGGTGGTAGATA+TGG | 0.391549 | 7.3:+77816325 | MS.gene93600:CDS |
| AGAGCAATCATGTCAGGTTC+AGG | 0.397066 | 7.3:-77814251 | None:intergenic |
| ATTTGAGAGGGTTAATGAAC+TGG | 0.426318 | 7.3:+77816126 | MS.gene93600:CDS |
| CTGTCAAGGGTGGTAGATAT+GGG | 0.429429 | 7.3:+77816326 | MS.gene93600:CDS |
| TAAACTAACACAAGAAGAAA+TGG | 0.436815 | 7.3:+77816279 | MS.gene93600:CDS |
| CTTGGTTGCATGAGCATGTC+AGG | 0.442441 | 7.3:+77814209 | MS.gene93600:CDS |
| GCAGTAGGAAGAATGAAGTT+AGG | 0.442452 | 7.3:+77814155 | MS.gene93600:CDS |
| AAAAGTGACACCAGATTGTA+TGG | 0.442868 | 7.3:-77814285 | None:intergenic |
| ATATAGTCTGATTCTGCTGC+AGG | 0.450000 | 7.3:-77816105 | None:intergenic |
| CAAGCTTCTCTCACGTAAGC+TGG | 0.451335 | 7.3:-77814628 | None:intergenic |
| CACACCAACGAACTCCTCCT+TGG | 0.466667 | 7.3:+77814335 | MS.gene93600:CDS |
| ATTGTTGCATATAGTCCTCT+TGG | 0.471189 | 7.3:+77815599 | MS.gene93600:CDS |
| AATTGTGGACAGGCTTTAAG+AGG | 0.474129 | 7.3:+77814526 | MS.gene93600:intron |
| TTTGGAGCCAAATATATTGA+AGG | 0.475808 | 7.3:+77814583 | MS.gene93600:CDS |
| TAATGAACTGGCTACAAAGA+AGG | 0.479658 | 7.3:+77816138 | MS.gene93600:CDS |
| TCGGGCACACGTCGTTTCCT+TGG | 0.481328 | 7.3:-77816201 | None:intergenic |
| ATTCACCATGCCATACAATC+TGG | 0.483546 | 7.3:+77814275 | MS.gene93600:CDS |
| AAGAGGAGGAGTGAGAGAGA+AGG | 0.485439 | 7.3:+77814543 | MS.gene93600:CDS |
| CGTCTCAGCTTGCATTGGCA+TGG | 0.497948 | 7.3:+77816170 | MS.gene93600:CDS |
| ATGAGCATGTCAGGTGTCTA+TGG | 0.498898 | 7.3:+77814218 | MS.gene93600:CDS |
| TGCAATTGGAGTGGTCACTA+TGG | 0.500317 | 7.3:+77815260 | MS.gene93600:CDS |
| GAAGTGTCCTTGCAAGGACT+TGG | 0.508887 | 7.3:+77814191 | MS.gene93600:CDS |
| GTCTTTAGCAGATGCTGTCA+AGG | 0.511022 | 7.3:+77816312 | MS.gene93600:CDS |
| AACGACGTGTGCCCGATACC+TGG | 0.512377 | 7.3:+77816208 | MS.gene93600:CDS |
| GAGAACTTTAATCAAAACAT+TGG | 0.516960 | 7.3:+77816244 | MS.gene93600:CDS |
| TCGTCTTCCAATTGAAATCA+CGG | 0.530494 | 7.3:+77814717 | MS.gene93600:CDS |
| GAAGTTAGGATCACAAGGAA+TGG | 0.532873 | 7.3:+77814169 | MS.gene93600:CDS |
| TCTTCTGATTGTTGAAGCTG+AGG | 0.532875 | 7.3:-77815209 | None:intergenic |
| ACTAAATCAAACCTGCAAGT+TGG | 0.537019 | 7.3:-77815310 | None:intergenic |
| AGAAGAACAATGACAGCAGT+AGG | 0.537429 | 7.3:+77814140 | None:intergenic |
| TACTCCGTCTCAGCTTGCAT+TGG | 0.539631 | 7.3:+77816165 | MS.gene93600:CDS |
| GGAGGAGTTCGTTGGTGTGA+GGG | 0.544146 | 7.3:-77814331 | None:intergenic |
| AATGAACTGGCTACAAAGAA+GGG | 0.546567 | 7.3:+77816139 | MS.gene93600:CDS |
| CATGCCAATGCAAGCTGAGA+CGG | 0.554180 | 7.3:-77816169 | None:intergenic |
| TGAATGAGAGCAATCATGTC+AGG | 0.558885 | 7.3:-77814257 | None:intergenic |
| CTTTCCAAGGAGGAGTTCGT+TGG | 0.559199 | 7.3:-77814339 | None:intergenic |
| AACAAAGGATGACTACCGCC+AGG | 0.563602 | 7.3:+77815664 | MS.gene93600:CDS |
| TTGGAGCCAAATATATTGAA+GGG | 0.564347 | 7.3:+77814584 | MS.gene93600:CDS |
| AGGAGGAGTTCGTTGGTGTG+AGG | 0.567455 | 7.3:-77814332 | None:intergenic |
| GCATATAGTCCTCTTGGACG+AGG | 0.577164 | 7.3:+77815605 | MS.gene93600:CDS |
| GCTTTCCAAGAAGAGGGTGG+TGG | 0.577796 | 7.3:-77816382 | None:intergenic |
| ATGTCAGGTTCAGGTTTAGG+AGG | 0.578905 | 7.3:-77814242 | None:intergenic |
| TTACACAGCTTTCCAAGAAG+AGG | 0.580511 | 7.3:-77816389 | None:intergenic |
| AGAATCAGACTATATTTGAG+AGG | 0.585843 | 7.3:+77816113 | MS.gene93600:CDS |
| TACACAGCTTTCCAAGAAGA+GGG | 0.586230 | 7.3:-77816388 | None:intergenic |
| AGAAAGTAAGAACCTTTCCA+AGG | 0.586920 | 7.3:-77814352 | None:intergenic |
| CATGCAACCAAGTCCTTGCA+AGG | 0.590784 | 7.3:-77814198 | None:intergenic |
| GGAATGGAAGTGTCCTTGCA+AGG | 0.592055 | 7.3:+77814185 | MS.gene93600:CDS |
| GAATCAGACTATATTTGAGA+GGG | 0.604511 | 7.3:+77816114 | MS.gene93600:CDS |
| GAAAAGAATCCTCGTCCAAG+AGG | 0.611487 | 7.3:-77815614 | None:intergenic |
| CAACGAACTCCTCCTTGGAA+AGG | 0.612819 | 7.3:+77814340 | MS.gene93600:CDS |
| ACTATGGTCAAGAGATGTTG+AGG | 0.614034 | 7.3:+77815276 | MS.gene93600:CDS |
| TGTGGACAGGCTTTAAGAGG+AGG | 0.614236 | 7.3:+77814529 | MS.gene93600:intron |
| ATGGGGATGAAATAAGTACA+TGG | 0.614624 | 7.3:+77816344 | MS.gene93600:CDS |
| TCTTTAGCAGATGCTGTCAA+GGG | 0.626442 | 7.3:+77816313 | MS.gene93600:CDS |
| GATTGTTGAGAACTTAACAA+AGG | 0.637901 | 7.3:+77815649 | MS.gene93600:CDS |
| AGAATGAAGTTAGGATCACA+AGG | 0.639560 | 7.3:+77814164 | MS.gene93600:CDS |
| TTAGCAGATGCTGTCAAGGG+TGG | 0.645754 | 7.3:+77816316 | MS.gene93600:CDS |
| TAACAGCTGTGCAATTGGAG+TGG | 0.661184 | 7.3:+77815251 | MS.gene93600:CDS |
| AAGTAAGAACCTTTCCAAGG+AGG | 0.662248 | 7.3:-77814349 | None:intergenic |
| GTGAGGGCCATAGATGTCAG+AGG | 0.676572 | 7.3:-77814315 | None:intergenic |
| TTGGCATGGCTTCATCACCA+AGG | 0.680145 | 7.3:+77816184 | MS.gene93600:CDS |
| ACAGCTTTCCAAGAAGAGGG+TGG | 0.690524 | 7.3:-77816385 | None:intergenic |
| TGTCAAGGGTGGTAGATATG+GGG | 0.702694 | 7.3:+77816327 | MS.gene93600:CDS |
| TGACACCAGATTGTATGGCA+TGG | 0.709987 | 7.3:-77814280 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTAAAATAAGACATTTT+GGG | - | chr7.3:77815968-77815987 | None:intergenic | 10.0% |
| !!! | TTATGATTTTTTTTTTCTTA+GGG | + | chr7.3:77815562-77815581 | MS.gene93600:intron | 10.0% |
| !! | ACAAATAGAAGATTATATTT+AGG | - | chr7.3:77816047-77816066 | None:intergenic | 15.0% |
| !! | AGATATTTAATAATTGATGT+AGG | - | chr7.3:77815993-77816012 | None:intergenic | 15.0% |
| !! | TATAAAAATGTGTTTCAATA+TGG | - | chr7.3:77814836-77814855 | None:intergenic | 15.0% |
| !! | TATTACCTAAAATTAATGTT+TGG | + | chr7.3:77814858-77814877 | MS.gene93600:intron | 15.0% |
| !! | TATTTGTTTACATGTATAAT+TGG | + | chr7.3:77815083-77815102 | MS.gene93600:intron | 15.0% |
| !!! | CTAATTAAAATAAGACATTT+TGG | - | chr7.3:77815969-77815988 | None:intergenic | 15.0% |
| !!! | GTTATGATTTTTTTTTTCTT+AGG | + | chr7.3:77815561-77815580 | MS.gene93600:intron | 15.0% |
| !!! | TGGATAAATTATTTTCAAAA+AGG | + | chr7.3:77814878-77814897 | MS.gene93600:intron | 15.0% |
| !!! | TTTATCCAAACATTAATTTT+AGG | - | chr7.3:77814866-77814885 | None:intergenic | 15.0% |
| !! | AAAAAAAATCATAACTCATG+AGG | - | chr7.3:77815556-77815575 | None:intergenic | 20.0% |
| !! | AAATTTCCCTTCAATATATT+TGG | - | chr7.3:77814593-77814612 | None:intergenic | 20.0% |
| !! | ACGATTGTAATTTAAGAAAA+TGG | + | chr7.3:77815419-77815438 | MS.gene93600:intron | 20.0% |
| !! | TTAAAATTGCAATGATATGA+AGG | + | chr7.3:77815382-77815401 | MS.gene93600:intron | 20.0% |
| !!! | AAAATTCTTTGATTCCATTT+TGG | + | chr7.3:77814753-77814772 | MS.gene93600:intron | 20.0% |
| !!! | TTGATTAAAGTTCTCAATTT+TGG | - | chr7.3:77816239-77816258 | None:intergenic | 20.0% |
| ! | AACTTTCTCTCTTAATCTAA+CGG | - | chr7.3:77814938-77814957 | None:intergenic | 25.0% |
| ! | AGCAAACATATGCTTATTTA+TGG | - | chr7.3:77814795-77814814 | None:intergenic | 25.0% |
| ! | CTTAAAAAACTAGTTGAAGA+GGG | + | chr7.3:77815157-77815176 | MS.gene93600:CDS | 25.0% |
| ! | GAGAACTTTAATCAAAACAT+TGG | + | chr7.3:77816244-77816263 | MS.gene93600:CDS | 25.0% |
| ! | GAGGGAAAAATAAAATACAT+TGG | + | chr7.3:77815175-77815194 | MS.gene93600:CDS | 25.0% |
| ! | TAAACTAACACAAGAAGAAA+TGG | + | chr7.3:77816279-77816298 | MS.gene93600:CDS | 25.0% |
| ! | TATTAATGATGTCTATGTGT+CGG | - | chr7.3:77815801-77815820 | None:intergenic | 25.0% |
| ! | TGTTATATAGATTCTAACCT+TGG | + | chr7.3:77815939-77815958 | MS.gene93600:intron | 25.0% |
| ! | TTGAATGTACTTACAAGTAT+TGG | + | chr7.3:77815448-77815467 | MS.gene93600:intron | 25.0% |
| !! | ATTAAAGTTCTCAATTTTGG+TGG | - | chr7.3:77816236-77816255 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTCTTAGGGAACT+TGG | + | chr7.3:77815569-77815588 | MS.gene93600:intron | 25.0% |
| AACTGACAAGTATGAAATAC+TGG | + | chr7.3:77815743-77815762 | MS.gene93600:intron | 30.0% | |
| AAGAAATAATTCCAACTTGC+AGG | + | chr7.3:77815299-77815318 | MS.gene93600:CDS | 30.0% | |
| AATCAAACCGTGATTTCAAT+TGG | - | chr7.3:77814727-77814746 | None:intergenic | 30.0% | |
| AATGTGTATGTGTGAAATTG+TGG | + | chr7.3:77814511-77814530 | MS.gene93600:intron | 30.0% | |
| AGAATCAGACTATATTTGAG+AGG | + | chr7.3:77816113-77816132 | MS.gene93600:CDS | 30.0% | |
| CCCAATCTTACATAGTAAAA+GGG | - | chr7.3:77815134-77815153 | None:intergenic | 30.0% | |
| CTCAATTTAAGCTACCAAAA+TGG | - | chr7.3:77814770-77814789 | None:intergenic | 30.0% | |
| GAATCAGACTATATTTGAGA+GGG | + | chr7.3:77816114-77816133 | MS.gene93600:CDS | 30.0% | |
| GATTGTTGAGAACTTAACAA+AGG | + | chr7.3:77815649-77815668 | MS.gene93600:CDS | 30.0% | |
| GCTTAAAAAACTAGTTGAAG+AGG | + | chr7.3:77815156-77815175 | MS.gene93600:CDS | 30.0% | |
| TTGGAGCCAAATATATTGAA+GGG | + | chr7.3:77814584-77814603 | MS.gene93600:CDS | 30.0% | |
| ! | CCCTTTTACTATGTAAGATT+GGG | + | chr7.3:77815131-77815150 | MS.gene93600:intron | 30.0% |
| ! | CCTTTTACTATGTAAGATTG+GGG | + | chr7.3:77815132-77815151 | MS.gene93600:intron | 30.0% |
| ! | TCCCTTTTACTATGTAAGAT+TGG | + | chr7.3:77815130-77815149 | MS.gene93600:intron | 30.0% |
| ! | TTTGGAGCCAAATATATTGA+AGG | + | chr7.3:77814583-77814602 | MS.gene93600:CDS | 30.0% |
| AAAAGTGACACCAGATTGTA+TGG | - | chr7.3:77814288-77814307 | None:intergenic | 35.0% | |
| AAACACACGTCTTTAATCGT+TGG | + | chr7.3:77815507-77815526 | MS.gene93600:intron | 35.0% | |
| AACGATTAAAGACGTGTGTT+TGG | - | chr7.3:77815508-77815527 | None:intergenic | 35.0% | |
| AATGAACTGGCTACAAAGAA+GGG | + | chr7.3:77816139-77816158 | MS.gene93600:CDS | 35.0% | |
| ACTAAATCAAACCTGCAAGT+TGG | - | chr7.3:77815313-77815332 | None:intergenic | 35.0% | |
| AGAAAGTAAGAACCTTTCCA+AGG | - | chr7.3:77814355-77814374 | None:intergenic | 35.0% | |
| AGAATGAAGTTAGGATCACA+AGG | + | chr7.3:77814164-77814183 | MS.gene93600:CDS | 35.0% | |
| ATGAAATACTGGCACAAACA+TGG | + | chr7.3:77815754-77815773 | MS.gene93600:intron | 35.0% | |
| ATGGGGATGAAATAAGTACA+TGG | + | chr7.3:77816344-77816363 | MS.gene93600:CDS | 35.0% | |
| ATTGTTGCATATAGTCCTCT+TGG | + | chr7.3:77815599-77815618 | MS.gene93600:CDS | 35.0% | |
| ATTTGAGAGGGTTAATGAAC+TGG | + | chr7.3:77816126-77816145 | MS.gene93600:CDS | 35.0% | |
| CCCCAATCTTACATAGTAAA+AGG | - | chr7.3:77815135-77815154 | None:intergenic | 35.0% | |
| GTTGAATTGGCTACAAAGTT+TGG | + | chr7.3:77814565-77814584 | MS.gene93600:CDS | 35.0% | |
| TAATGAACTGGCTACAAAGA+AGG | + | chr7.3:77816138-77816157 | MS.gene93600:CDS | 35.0% | |
| TCACATGTTCAGTATTGTGT+TGG | + | chr7.3:77815861-77815880 | MS.gene93600:intron | 35.0% | |
| TCGTCTTCCAATTGAAATCA+CGG | + | chr7.3:77814717-77814736 | MS.gene93600:CDS | 35.0% | |
| TTATCTAGCATTTCTCTCTG+TGG | + | chr7.3:77815352-77815371 | MS.gene93600:intron | 35.0% | |
| TTTCATACTTGTCAGTTGAG+TGG | - | chr7.3:77815740-77815759 | None:intergenic | 35.0% | |
| TTTCTTAGGGAACTTGGTAT+TGG | + | chr7.3:77815575-77815594 | MS.gene93600:intron | 35.0% | |
| ! | ACACGAAACCTTCAAGTTTA+AGG | - | chr7.3:77815922-77815941 | None:intergenic | 35.0% |
| ! | GAAGGGAAATTTGAGATCTT+TGG | + | chr7.3:77814601-77814620 | MS.gene93600:CDS | 35.0% |
| !!! | AGGTTTTCAGGTTGAAATCT+AGG | - | chr7.3:77816088-77816107 | None:intergenic | 35.0% |
| AAGTAAGAACCTTTCCAAGG+AGG | - | chr7.3:77814352-77814371 | None:intergenic | 40.0% | |
| ACTATGGTCAAGAGATGTTG+AGG | + | chr7.3:77815276-77815295 | MS.gene93600:CDS | 40.0% | |
| AGTGAGAGAGAAGGTTGAAT+TGG | + | chr7.3:77814552-77814571 | MS.gene93600:CDS | 40.0% | |
| ATATAGTCTGATTCTGCTGC+AGG | - | chr7.3:77816108-77816127 | None:intergenic | 40.0% | |
| ATTCACCATGCCATACAATC+TGG | + | chr7.3:77814275-77814294 | MS.gene93600:CDS | 40.0% | |
| CGAACACACCTTAAACTTGA+AGG | + | chr7.3:77815911-77815930 | MS.gene93600:intron | 40.0% | |
| CTTGATACCTCTGACATCTA+TGG | + | chr7.3:77814308-77814327 | MS.gene93600:CDS | 40.0% | |
| CTTTCTCAATCTACGATCAG+CGG | + | chr7.3:77814962-77814981 | MS.gene93600:intron | 40.0% | |
| GAAGTTAGGATCACAAGGAA+TGG | + | chr7.3:77814169-77814188 | MS.gene93600:CDS | 40.0% | |
| GCAGTAGGAAGAATGAAGTT+AGG | + | chr7.3:77814155-77814174 | MS.gene93600:CDS | 40.0% | |
| GTATGTGTGAAATTGTGGAC+AGG | + | chr7.3:77814516-77814535 | MS.gene93600:intron | 40.0% | |
| TACACAGCTTTCCAAGAAGA+GGG | - | chr7.3:77816391-77816410 | None:intergenic | 40.0% | |
| TCCAATAACAGCTGTGCAAT+TGG | + | chr7.3:77815246-77815265 | MS.gene93600:CDS | 40.0% | |
| TCCAATTGCACAGCTGTTAT+TGG | - | chr7.3:77815250-77815269 | None:intergenic | 40.0% | |
| TCTTCTGATTGTTGAAGCTG+AGG | - | chr7.3:77815212-77815231 | None:intergenic | 40.0% | |
| TCTTTAGCAGATGCTGTCAA+GGG | + | chr7.3:77816313-77816332 | MS.gene93600:CDS | 40.0% | |
| TGAATGAGAGCAATCATGTC+AGG | - | chr7.3:77814260-77814279 | None:intergenic | 40.0% | |
| TTACACAGCTTTCCAAGAAG+AGG | - | chr7.3:77816392-77816411 | None:intergenic | 40.0% | |
| ! | ATCATGTCAGGTTCAGGTTT+AGG | - | chr7.3:77814248-77814267 | None:intergenic | 40.0% |
| !! | AATTGTGGACAGGCTTTAAG+AGG | + | chr7.3:77814526-77814545 | MS.gene93600:intron | 40.0% |
| !! | ATTTTGGTGGTTCCAGGTAT+CGG | - | chr7.3:77816223-77816242 | None:intergenic | 40.0% |
| !! | TTCTCAATTTTGGTGGTTCC+AGG | - | chr7.3:77816229-77816248 | None:intergenic | 40.0% |
| !!! | TAAGACATTTTGGGATGCCA+AGG | - | chr7.3:77815959-77815978 | None:intergenic | 40.0% |
| AAGTCACTTAGCTCGACGTT+AGG | - | chr7.3:77814475-77814494 | None:intergenic | 45.0% | |
| AGAGCAATCATGTCAGGTTC+AGG | - | chr7.3:77814254-77814273 | None:intergenic | 45.0% | |
| ATGAGCATGTCAGGTGTCTA+TGG | + | chr7.3:77814218-77814237 | MS.gene93600:CDS | 45.0% | |
| CTGTCAAGGGTGGTAGATAT+GGG | + | chr7.3:77816326-77816345 | MS.gene93600:CDS | 45.0% | |
| GAAAAGAATCCTCGTCCAAG+AGG | - | chr7.3:77815617-77815636 | None:intergenic | 45.0% | |
| GTCTTTAGCAGATGCTGTCA+AGG | + | chr7.3:77816312-77816331 | MS.gene93600:CDS | 45.0% | |
| TAACAGCTGTGCAATTGGAG+TGG | + | chr7.3:77815251-77815270 | MS.gene93600:CDS | 45.0% | |
| TGACACCAGATTGTATGGCA+TGG | - | chr7.3:77814283-77814302 | None:intergenic | 45.0% | |
| TGCAATTGGAGTGGTCACTA+TGG | + | chr7.3:77815260-77815279 | MS.gene93600:CDS | 45.0% | |
| TGTCAAGGGTGGTAGATATG+GGG | + | chr7.3:77816327-77816346 | MS.gene93600:CDS | 45.0% | |
| ! | AGCATGCTTTTCGACAAACC+TGG | - | chr7.3:77815685-77815704 | None:intergenic | 45.0% |
| ! | ATGCTTTTCGACAAACCTGG+CGG | - | chr7.3:77815682-77815701 | None:intergenic | 45.0% |
| ! | ATGTCAGGTTCAGGTTTAGG+AGG | - | chr7.3:77814245-77814264 | None:intergenic | 45.0% |
| ! | GGACGAGGATTCTTTTCATC+AGG | + | chr7.3:77815620-77815639 | MS.gene93600:CDS | 45.0% |
| ! | TGATTCTGCTGCAGGTTTTC+AGG | - | chr7.3:77816100-77816119 | None:intergenic | 45.0% |
| !! | CTTTAATCGTTGGTGCTGCA+TGG | + | chr7.3:77815517-77815536 | MS.gene93600:intron | 45.0% |
| !! | GTTTGGTGTCAAACACGTGT+TGG | - | chr7.3:77815491-77815510 | None:intergenic | 45.0% |
| !! | TTTTGGTGGTTCCAGGTATC+GGG | - | chr7.3:77816222-77816241 | None:intergenic | 45.0% |
| AACAAAGGATGACTACCGCC+AGG | + | chr7.3:77815664-77815683 | MS.gene93600:CDS | 50.0% | |
| AAGAGGAGGAGTGAGAGAGA+AGG | + | chr7.3:77814543-77814562 | MS.gene93600:CDS | 50.0% | |
| ACAGCTTTCCAAGAAGAGGG+TGG | - | chr7.3:77816388-77816407 | None:intergenic | 50.0% | |
| ATACTCCACCACCCTCTTCT+TGG | + | chr7.3:77816377-77816396 | MS.gene93600:CDS | 50.0% | |
| CAACGAACTCCTCCTTGGAA+AGG | + | chr7.3:77814340-77814359 | MS.gene93600:CDS | 50.0% | |
| CAAGCTTCTCTCACGTAAGC+TGG | - | chr7.3:77814631-77814650 | None:intergenic | 50.0% | |
| CATGCAACCAAGTCCTTGCA+AGG | - | chr7.3:77814201-77814220 | None:intergenic | 50.0% | |
| CATGCCAATGCAAGCTGAGA+CGG | - | chr7.3:77816172-77816191 | None:intergenic | 50.0% | |
| CTTGGTTGCATGAGCATGTC+AGG | + | chr7.3:77814209-77814228 | MS.gene93600:CDS | 50.0% | |
| CTTTCCAAGGAGGAGTTCGT+TGG | - | chr7.3:77814342-77814361 | None:intergenic | 50.0% | |
| GCATATAGTCCTCTTGGACG+AGG | + | chr7.3:77815605-77815624 | MS.gene93600:CDS | 50.0% | |
| GCTGTCAAGGGTGGTAGATA+TGG | + | chr7.3:77816325-77816344 | MS.gene93600:CDS | 50.0% | |
| GTCGGTGACACTATCATGTC+AGG | - | chr7.3:77815783-77815802 | None:intergenic | 50.0% | |
| TACTCCGTCTCAGCTTGCAT+TGG | + | chr7.3:77816165-77816184 | MS.gene93600:CDS | 50.0% | |
| TCAATCTACGATCAGCGGCA+TGG | + | chr7.3:77814967-77814986 | MS.gene93600:intron | 50.0% | |
| TTAGCAGATGCTGTCAAGGG+TGG | + | chr7.3:77816316-77816335 | MS.gene93600:CDS | 50.0% | |
| TTGGCATGGCTTCATCACCA+AGG | + | chr7.3:77816184-77816203 | MS.gene93600:CDS | 50.0% | |
| ! | GAAGTGTCCTTGCAAGGACT+TGG | + | chr7.3:77814191-77814210 | MS.gene93600:CDS | 50.0% |
| !! | GGAATGGAAGTGTCCTTGCA+AGG | + | chr7.3:77814185-77814204 | MS.gene93600:CDS | 50.0% |
| !! | TGTGGACAGGCTTTAAGAGG+AGG | + | chr7.3:77814529-77814548 | MS.gene93600:intron | 50.0% |
| AGGAGGAGTTCGTTGGTGTG+AGG | - | chr7.3:77814335-77814354 | None:intergenic | 55.0% | |
| CACACCAACGAACTCCTCCT+TGG | + | chr7.3:77814335-77814354 | MS.gene93600:CDS | 55.0% | |
| GCTTTCCAAGAAGAGGGTGG+TGG | - | chr7.3:77816385-77816404 | None:intergenic | 55.0% | |
| GGAGGAGTTCGTTGGTGTGA+GGG | - | chr7.3:77814334-77814353 | None:intergenic | 55.0% | |
| GTGAGGGCCATAGATGTCAG+AGG | - | chr7.3:77814318-77814337 | None:intergenic | 55.0% | |
| ! | CGTCTCAGCTTGCATTGGCA+TGG | + | chr7.3:77816170-77816189 | MS.gene93600:CDS | 55.0% |
| AACGACGTGTGCCCGATACC+TGG | + | chr7.3:77816208-77816227 | MS.gene93600:CDS | 60.0% | |
| TCGGGCACACGTCGTTTCCT+TGG | - | chr7.3:77816204-77816223 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 77814149 | 77816411 | 77814149 | ID=MS.gene93600 |
| chr7.3 | mRNA | 77814149 | 77816411 | 77814149 | ID=MS.gene93600.t1;Parent=MS.gene93600 |
| chr7.3 | exon | 77814149 | 77814361 | 77814149 | ID=MS.gene93600.t1.exon1;Parent=MS.gene93600.t1 |
| chr7.3 | CDS | 77814149 | 77814361 | 77814149 | ID=cds.MS.gene93600.t1;Parent=MS.gene93600.t1 |
| chr7.3 | exon | 77814538 | 77814738 | 77814538 | ID=MS.gene93600.t1.exon2;Parent=MS.gene93600.t1 |
| chr7.3 | CDS | 77814538 | 77814738 | 77814538 | ID=cds.MS.gene93600.t1;Parent=MS.gene93600.t1 |
| chr7.3 | exon | 77815148 | 77815320 | 77815148 | ID=MS.gene93600.t1.exon3;Parent=MS.gene93600.t1 |
| chr7.3 | CDS | 77815148 | 77815320 | 77815148 | ID=cds.MS.gene93600.t1;Parent=MS.gene93600.t1 |
| chr7.3 | exon | 77815583 | 77815685 | 77815583 | ID=MS.gene93600.t1.exon4;Parent=MS.gene93600.t1 |
| chr7.3 | CDS | 77815583 | 77815685 | 77815583 | ID=cds.MS.gene93600.t1;Parent=MS.gene93600.t1 |
| chr7.3 | exon | 77816079 | 77816411 | 77816079 | ID=MS.gene93600.t1.exon5;Parent=MS.gene93600.t1 |
| chr7.3 | CDS | 77816079 | 77816411 | 77816079 | ID=cds.MS.gene93600.t1;Parent=MS.gene93600.t1 |
| Gene Sequence |
| Protein sequence |
