Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93623.t1 | XP_003621701.1 | 95.9 | 338 | 14 | 0 | 1 | 338 | 1 | 338 | 3.20E-188 | 667.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93623.t1 | Q7XT99 | 76.8 | 341 | 74 | 2 | 2 | 337 | 9 | 349 | 2.2e-153 | 543.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93623.t1 | A2Q5B6 | 95.9 | 338 | 14 | 0 | 1 | 338 | 1 | 338 | 2.3e-188 | 667.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93623.t1 | MTR_7g021850 | 95.858 | 338 | 14 | 0 | 1 | 338 | 1 | 338 | 0.0 | 681 |
| MS.gene93623.t1 | MTR_7g021680 | 86.982 | 338 | 42 | 2 | 1 | 337 | 1 | 337 | 0.0 | 614 |
| MS.gene93623.t1 | MTR_7g021820 | 86.982 | 338 | 42 | 2 | 1 | 337 | 1 | 337 | 0.0 | 614 |
| MS.gene93623.t1 | MTR_1g102750 | 58.333 | 336 | 132 | 5 | 4 | 332 | 5 | 339 | 1.35e-136 | 392 |
| MS.gene93623.t1 | MTR_7g114980 | 57.567 | 337 | 132 | 5 | 6 | 332 | 13 | 348 | 1.96e-134 | 386 |
| MS.gene93623.t1 | MTR_7g114970 | 57.396 | 338 | 136 | 5 | 4 | 334 | 7 | 343 | 4.25e-134 | 385 |
| MS.gene93623.t1 | MTR_7g114990 | 56.928 | 332 | 134 | 6 | 7 | 332 | 16 | 344 | 2.66e-133 | 384 |
| MS.gene93623.t1 | MTR_1g102750 | 61.348 | 282 | 106 | 3 | 4 | 283 | 5 | 285 | 7.57e-122 | 353 |
| MS.gene93623.t1 | MTR_7g115010 | 52.994 | 334 | 133 | 5 | 7 | 332 | 12 | 329 | 1.36e-120 | 350 |
| MS.gene93623.t1 | MTR_7g114970 | 61.071 | 280 | 106 | 3 | 4 | 281 | 7 | 285 | 1.53e-120 | 348 |
| MS.gene93623.t1 | MTR_7g114980 | 60.854 | 281 | 104 | 3 | 6 | 281 | 13 | 292 | 1.64e-119 | 346 |
| MS.gene93623.t1 | MTR_7g114970 | 60.932 | 279 | 106 | 3 | 4 | 280 | 7 | 284 | 1.68e-119 | 346 |
| MS.gene93623.t1 | MTR_7g114970 | 60.246 | 244 | 90 | 4 | 94 | 331 | 4 | 246 | 4.39e-99 | 293 |
| MS.gene93623.t1 | MTR_7g021825 | 89.041 | 146 | 16 | 0 | 158 | 303 | 15 | 160 | 2.79e-97 | 285 |
| MS.gene93623.t1 | MTR_7g114970 | 62.755 | 196 | 72 | 1 | 4 | 198 | 7 | 202 | 2.02e-85 | 256 |
| MS.gene93623.t1 | MTR_7g114970 | 59.799 | 199 | 73 | 4 | 139 | 331 | 1 | 198 | 1.50e-76 | 234 |
| MS.gene93623.t1 | MTR_7g021670 | 85.496 | 131 | 18 | 1 | 1 | 131 | 1 | 130 | 1.30e-75 | 233 |
| MS.gene93623.t1 | MTR_7g021670 | 81.308 | 107 | 19 | 1 | 232 | 337 | 145 | 251 | 2.77e-56 | 184 |
| MS.gene93623.t1 | MTR_7g021685 | 89.855 | 69 | 7 | 0 | 1 | 69 | 1 | 69 | 1.99e-39 | 135 |
| MS.gene93623.t1 | MTR_1g102740 | 53.333 | 105 | 44 | 2 | 233 | 332 | 3 | 107 | 2.08e-31 | 114 |
| MS.gene93623.t1 | MTR_3g449790 | 30.330 | 333 | 196 | 11 | 6 | 315 | 37 | 356 | 8.90e-30 | 117 |
| MS.gene93623.t1 | MTR_3g449790 | 29.730 | 333 | 192 | 11 | 6 | 315 | 37 | 350 | 2.02e-29 | 116 |
| MS.gene93623.t1 | MTR_1g042730 | 27.628 | 333 | 190 | 13 | 8 | 296 | 65 | 390 | 5.63e-22 | 96.3 |
| MS.gene93623.t1 | MTR_3g092140 | 27.517 | 298 | 173 | 12 | 38 | 311 | 71 | 349 | 1.30e-21 | 95.9 |
| MS.gene93623.t1 | MTR_1g047250 | 26.168 | 321 | 208 | 10 | 9 | 310 | 6 | 316 | 8.60e-19 | 86.3 |
| MS.gene93623.t1 | MTR_4g092750 | 30.093 | 216 | 137 | 7 | 8 | 214 | 5 | 215 | 5.71e-17 | 80.5 |
| MS.gene93623.t1 | MTR_4g092750 | 30.093 | 216 | 137 | 7 | 8 | 214 | 5 | 215 | 6.67e-17 | 80.5 |
| MS.gene93623.t1 | MTR_4g092750 | 30.093 | 216 | 137 | 7 | 8 | 214 | 5 | 215 | 1.47e-16 | 79.3 |
| MS.gene93623.t1 | MTR_8g088160 | 25.461 | 271 | 153 | 10 | 14 | 239 | 49 | 315 | 8.68e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93623.t1 | AT1G60710 | 76.331 | 338 | 77 | 2 | 4 | 338 | 7 | 344 | 0.0 | 541 |
| MS.gene93623.t1 | AT1G60730 | 76.261 | 337 | 77 | 2 | 4 | 337 | 7 | 343 | 0.0 | 538 |
| MS.gene93623.t1 | AT1G60690 | 75.000 | 336 | 81 | 2 | 4 | 336 | 7 | 342 | 0.0 | 534 |
| MS.gene93623.t1 | AT1G60680 | 75.444 | 338 | 79 | 3 | 4 | 337 | 7 | 344 | 0.0 | 527 |
| MS.gene93623.t1 | AT1G60730 | 71.989 | 357 | 77 | 3 | 4 | 337 | 7 | 363 | 0.0 | 526 |
| MS.gene93623.t1 | AT1G10810 | 70.710 | 338 | 96 | 2 | 4 | 338 | 7 | 344 | 4.84e-179 | 499 |
| MS.gene93623.t1 | AT1G60750 | 71.598 | 338 | 75 | 4 | 4 | 337 | 8 | 328 | 5.46e-176 | 491 |
| MS.gene93623.t1 | AT1G10810 | 70.111 | 271 | 78 | 2 | 71 | 338 | 22 | 292 | 9.63e-140 | 398 |
| MS.gene93623.t1 | AT1G60680 | 79.825 | 228 | 45 | 1 | 4 | 230 | 7 | 234 | 1.04e-131 | 375 |
| MS.gene93623.t1 | AT1G10810 | 74.569 | 232 | 59 | 0 | 4 | 235 | 7 | 238 | 5.07e-124 | 356 |
| MS.gene93623.t1 | AT1G60730 | 75.540 | 139 | 34 | 0 | 4 | 142 | 7 | 145 | 1.76e-72 | 223 |
| MS.gene93623.t1 | AT5G53580 | 30.345 | 290 | 159 | 11 | 46 | 311 | 80 | 350 | 6.32e-26 | 106 |
| MS.gene93623.t1 | AT1G06690 | 28.235 | 340 | 194 | 13 | 6 | 315 | 48 | 367 | 1.10e-24 | 103 |
| MS.gene93623.t1 | AT4G33670 | 26.220 | 328 | 209 | 10 | 1 | 315 | 1 | 308 | 9.47e-23 | 97.1 |
| MS.gene93623.t1 | AT1G04690 | 27.184 | 309 | 194 | 10 | 8 | 297 | 5 | 301 | 5.17e-22 | 95.1 |
| MS.gene93623.t1 | AT1G04420 | 26.519 | 362 | 212 | 14 | 8 | 325 | 60 | 411 | 1.82e-21 | 94.7 |
Find 73 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCAATTGCACAGCTGTTAT+TGG | 0.154954 | 7.3:-77740837 | None:intergenic |
| CTTCCATGTAGGTTCCTTTC+CGG | 0.219280 | 7.3:-77742212 | None:intergenic |
| AAATGTACCATCAGTATATT+TGG | 0.233249 | 7.3:-77740237 | None:intergenic |
| CACACCAATGAACTTCTTCT+TGG | 0.235392 | 7.3:+77739964 | MS.gene93623:CDS |
| GTTCTCAACTTTGGTGGTTC+CGG | 0.259522 | 7.3:-77742095 | None:intergenic |
| AAGAAATAATTCCAACTTGC+AGG | 0.276199 | 7.3:+77740889 | MS.gene93623:CDS |
| AGTTAGAGAGAAGGTTGAAT+TGG | 0.294606 | 7.3:+77740199 | MS.gene93623:CDS |
| GTTGAATTGGCTACAAAGTT+TGG | 0.298080 | 7.3:+77740212 | MS.gene93623:CDS |
| TTCTCAACTTTGGTGGTTCC+GGG | 0.307826 | 7.3:-77742094 | None:intergenic |
| ATGAGCATGTCTGCTTTCTA+TGG | 0.338980 | 7.3:+77739847 | MS.gene93623:CDS |
| TCCAATAACAGCTGTGCAAT+TGG | 0.363190 | 7.3:+77740836 | MS.gene93623:CDS |
| ACTTTGGTGGTTCCGGGTAT+CGG | 0.366436 | 7.3:-77742088 | None:intergenic |
| TTTCTTAGGGAACTTGGTAT+TGG | 0.374176 | 7.3:+77741163 | MS.gene93623:intron |
| AATCTTACCGTGATTTCAAT+TGG | 0.392945 | 7.3:-77740371 | None:intergenic |
| AGAGCAATCATGTCAAGTTC+AGG | 0.403532 | 7.3:-77739880 | None:intergenic |
| CTTTGGTGGTTCCGGGTATC+GGG | 0.407993 | 7.3:-77742087 | None:intergenic |
| TTGATTAAAGTTCTCAACTT+TGG | 0.412299 | 7.3:-77742104 | None:intergenic |
| TAATGAACTGGCTGCTAAGA+AGG | 0.416202 | 7.3:+77742006 | MS.gene93623:CDS |
| GTCCTTGGCAGATATTGTTA+AGG | 0.418905 | 7.3:+77742180 | MS.gene93623:CDS |
| CTTTCCAAGAAGAAGTTCAT+TGG | 0.424932 | 7.3:-77739968 | None:intergenic |
| ATTTGAGAGGGTTAATGAAC+TGG | 0.426318 | 7.3:+77741994 | MS.gene93623:CDS |
| AATTGCAGAAATTGAGTCCT+TGG | 0.426435 | 7.3:+77742165 | MS.gene93623:CDS |
| ATTGTTGCATATAGTCCTCT+TGG | 0.432244 | 7.3:+77741187 | MS.gene93623:CDS |
| AATTGAGGACAGGCTTTGAA+TGG | 0.434369 | 7.3:+77740173 | MS.gene93623:intron |
| ATCATGTCAAGTTCAGGTTT+AGG | 0.440016 | 7.3:-77739874 | None:intergenic |
| AAAAGTGACACCAGATTGTA+TGG | 0.442868 | 7.3:-77739914 | None:intergenic |
| GAATGGAGGAGTTAGAGAGA+AGG | 0.446432 | 7.3:+77740190 | MS.gene93623:CDS |
| CATGCAACCAAGTCCTTGTA+AGG | 0.458876 | 7.3:-77739827 | None:intergenic |
| ACACTCCACCACTTTCGTCT+TGG | 0.460340 | 7.3:+77742242 | MS.gene93623:CDS |
| TCCTTGGCAGATATTGTTAA+GGG | 0.464128 | 7.3:+77742181 | MS.gene93623:CDS |
| ACAGTAGGAAGAATGAAGTT+AGG | 0.469331 | 7.3:+77739784 | MS.gene93623:CDS |
| ATTGTTAAGGGTGACAGAAC+CGG | 0.471059 | 7.3:+77742193 | MS.gene93623:CDS |
| ATTAAAGTTCTCAACTTTGG+TGG | 0.473185 | 7.3:-77742101 | None:intergenic |
| ATTCACCATGCCATACAATC+TGG | 0.483546 | 7.3:+77739904 | MS.gene93623:CDS |
| CAAGCTTCTCTCACATAAGC+TGG | 0.487316 | 7.3:-77740275 | None:intergenic |
| CATCTCAGCTTGCATTGGCA+TGG | 0.489745 | 7.3:+77742038 | MS.gene93623:CDS |
| ATATAGTCTGATTCTGCTGT+AGG | 0.498584 | 7.3:-77741973 | None:intergenic |
| TGCAATTGGAGTGGTCACTA+TGG | 0.500317 | 7.3:+77740850 | MS.gene93623:CDS |
| TTGTTGCATATAGTCCTCTT+GGG | 0.500832 | 7.3:+77741188 | MS.gene93623:CDS |
| TCGGGCACACGTCGTCTCCT+TGG | 0.501395 | 7.3:-77742069 | None:intergenic |
| CAATGAACTTCTTCTTGGAA+AGG | 0.512113 | 7.3:+77739969 | MS.gene93623:CDS |
| TACTCCATCTCAGCTTGCAT+TGG | 0.515172 | 7.3:+77742033 | MS.gene93623:CDS |
| CATGCCAATGCAAGCTGAGA+TGG | 0.529498 | 7.3:-77742037 | None:intergenic |
| GAAGTGTCCTTACAAGGACT+TGG | 0.532825 | 7.3:+77739820 | MS.gene93623:CDS |
| TCTTCTGATTGTTGAAGCTG+AGG | 0.532875 | 7.3:-77740799 | None:intergenic |
| ACTAAATCAAACCTGCAAGT+TGG | 0.537019 | 7.3:-77740900 | None:intergenic |
| GTGTCAGATTCCTTCCATGT+AGG | 0.542312 | 7.3:-77742223 | None:intergenic |
| GCATATAGTCCTCTTGGGAG+AGG | 0.543332 | 7.3:+77741193 | MS.gene93623:CDS |
| GGCATGGAAGTGTCCTTACA+AGG | 0.559704 | 7.3:+77739814 | MS.gene93623:CDS |
| GAAGTTAGGATCACAAGGCA+TGG | 0.564034 | 7.3:+77739798 | MS.gene93623:CDS |
| TGAGGACAGGCTTTGAATGG+AGG | 0.569130 | 7.3:+77740176 | MS.gene93623:intron |
| TACAAAGGATGACTACCGCC+AGG | 0.569817 | 7.3:+77741252 | MS.gene93623:CDS |
| TCGTCTTCCAATTGAAATCA+CGG | 0.570295 | 7.3:+77740364 | MS.gene93623:CDS |
| GACGACGTGTGCCCGATACC+CGG | 0.570620 | 7.3:+77742076 | MS.gene93623:CDS |
| GAACCGGAAAGGAACCTACA+TGG | 0.581675 | 7.3:+77742209 | MS.gene93623:CDS |
| AGAATCAGACTATATTTGAG+AGG | 0.585843 | 7.3:+77741981 | MS.gene93623:CDS |
| AATGAACTGGCTGCTAAGAA+GGG | 0.592584 | 7.3:+77742007 | MS.gene93623:CDS |
| CTGAGAACAATGGCAACAGT+AGG | 0.598309 | 7.3:+77739769 | None:intergenic |
| GAATCAGACTATATTTGAGA+GGG | 0.604511 | 7.3:+77741982 | MS.gene93623:CDS |
| CGGAAAGGAACCTACATGGA+AGG | 0.604731 | 7.3:+77742213 | MS.gene93623:CDS |
| GAGAACTTTAATCAAAACAT+CGG | 0.608267 | 7.3:+77742112 | MS.gene93623:CDS |
| ACCCTTAACAATATCTGCCA+AGG | 0.610315 | 7.3:-77742182 | None:intergenic |
| ACTATGGTCAAGAGATGTTG+AGG | 0.614034 | 7.3:+77740866 | MS.gene93623:CDS |
| TTTGGAGCCAAATATACTGA+TGG | 0.623125 | 7.3:+77740230 | MS.gene93623:CDS |
| GAAAAGAATCCTCTCCCAAG+AGG | 0.625633 | 7.3:-77741202 | None:intergenic |
| GATTGCTGAGAACTTTACAA+AGG | 0.626430 | 7.3:+77741237 | MS.gene93623:CDS |
| TAAGGGTGACAGAACCGGAA+AGG | 0.631823 | 7.3:+77742198 | MS.gene93623:CDS |
| AGAATGAAGTTAGGATCACA+AGG | 0.646380 | 7.3:+77739793 | MS.gene93623:CDS |
| TAACAGCTGTGCAATTGGAG+TGG | 0.661184 | 7.3:+77740841 | MS.gene93623:CDS |
| AGAAGAAGTTCATTGGTGTG+AGG | 0.680165 | 7.3:-77739961 | None:intergenic |
| TTGGCATGGCTTCATCACCA+AGG | 0.693380 | 7.3:+77742052 | MS.gene93623:CDS |
| TGACACCAGATTGTATGGCA+TGG | 0.709987 | 7.3:-77739909 | None:intergenic |
| GATGGTACATTTGAGATCTG+TGG | 0.711076 | 7.3:+77740248 | MS.gene93623:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGACTATAAAATTTTATATT+AGG | - | chr7.3:77740014-77740033 | None:intergenic | 10.0% |
| !! | AAGCATGAATAATTATTAAT+AGG | - | chr7.3:77741589-77741608 | None:intergenic | 15.0% |
| !! | ATTTACCTAAAATTAATGTT+TGG | + | chr7.3:77740498-77740517 | MS.gene93623:intron | 15.0% |
| !! | TATAAAAATGTGTTTCAATA+TGG | - | chr7.3:77740479-77740498 | None:intergenic | 15.0% |
| !!! | AAAATAAGCATTTTTTTTGA+AGG | - | chr7.3:77741623-77741642 | None:intergenic | 15.0% |
| !!! | AAAATTCTTTGATTTGATTT+TGG | + | chr7.3:77740400-77740419 | MS.gene93623:intron | 15.0% |
| !!! | ACATTGATTAATAAGTTATA+AGG | - | chr7.3:77741841-77741860 | None:intergenic | 15.0% |
| !!! | AGTTATGATTTTTTTTCTTA+GGG | + | chr7.3:77741150-77741169 | MS.gene93623:intron | 15.0% |
| !!! | TAGTTAAAATAGAACATTTT+GGG | - | chr7.3:77741543-77741562 | None:intergenic | 15.0% |
| !!! | TTTATCCAAACATTAATTTT+AGG | - | chr7.3:77740506-77740525 | None:intergenic | 15.0% |
| !! | AAAAAAAATCATAACTCATG+AGG | - | chr7.3:77741146-77741165 | None:intergenic | 20.0% |
| !! | ACGATTGTAATTTAAGAAAA+TGG | + | chr7.3:77741009-77741028 | MS.gene93623:intron | 20.0% |
| !! | ATCTATATAGTTCATATCAA+AGG | + | chr7.3:77741749-77741768 | MS.gene93623:intron | 20.0% |
| !! | TTAAAATTGCAATGATATGA+AGG | + | chr7.3:77740972-77740991 | MS.gene93623:intron | 20.0% |
| !! | TTATTAATCAATGTACATCA+GGG | + | chr7.3:77741847-77741866 | MS.gene93623:intron | 20.0% |
| !!! | AGTTAAAATAGAACATTTTG+GGG | - | chr7.3:77741542-77741561 | None:intergenic | 20.0% |
| !!! | CAATCTAAGATATATATAAC+TGG | + | chr7.3:77740673-77740692 | MS.gene93623:intron | 20.0% |
| !!! | CTAGTTAAAATAGAACATTT+TGG | - | chr7.3:77741544-77741563 | None:intergenic | 20.0% |
| !!! | GAGTTATGATTTTTTTTCTT+AGG | + | chr7.3:77741149-77741168 | MS.gene93623:intron | 20.0% |
| !!! | TAATTAATGCTATTTTAGGA+AGG | - | chr7.3:77740617-77740636 | None:intergenic | 20.0% |
| ! | AAATGTACCATCAGTATATT+TGG | - | chr7.3:77740240-77740259 | None:intergenic | 25.0% |
| ! | AACTAACAAGTATGAAATAC+TGG | + | chr7.3:77741340-77741359 | MS.gene93623:intron | 25.0% |
| ! | ACAGATTTCATTCAAGATAA+GGG | + | chr7.3:77740556-77740575 | MS.gene93623:intron | 25.0% |
| ! | ATAGTTGTAAAACAGATATC+TGG | - | chr7.3:77740643-77740662 | None:intergenic | 25.0% |
| ! | CTTAAAAAACTAGTTGAAGA+GGG | + | chr7.3:77740747-77740766 | MS.gene93623:CDS | 25.0% |
| ! | CTTATTAATCAATGTACATC+AGG | + | chr7.3:77741846-77741865 | MS.gene93623:intron | 25.0% |
| ! | GAGAACTTTAATCAAAACAT+CGG | + | chr7.3:77742112-77742131 | MS.gene93623:CDS | 25.0% |
| ! | GAGGGAAAAATAAAATACAT+TGG | + | chr7.3:77740765-77740784 | MS.gene93623:CDS | 25.0% |
| ! | TACAGATTTCATTCAAGATA+AGG | + | chr7.3:77740555-77740574 | MS.gene93623:intron | 25.0% |
| ! | TTGAATGTACTTACATGTAT+TGG | + | chr7.3:77741038-77741057 | MS.gene93623:intron | 25.0% |
| ! | TTGATTAAAGTTCTCAACTT+TGG | - | chr7.3:77742107-77742126 | None:intergenic | 25.0% |
| !!! | AAAAAAATGCTTATTTTCCG+TGG | + | chr7.3:77741626-77741645 | MS.gene93623:intron | 25.0% |
| !!! | ATTTTTTTTCTTAGGGAACT+TGG | + | chr7.3:77741157-77741176 | MS.gene93623:intron | 25.0% |
| !!! | GTGCTAATTAATGCTATTTT+AGG | - | chr7.3:77740621-77740640 | None:intergenic | 25.0% |
| AAAACATGTATGGTATAGTG+AGG | - | chr7.3:77741666-77741685 | None:intergenic | 30.0% | |
| AAACACACGTCTTTAATCAT+TGG | + | chr7.3:77741097-77741116 | MS.gene93623:intron | 30.0% | |
| AAATTGAGTACCATAAGCAT+AGG | + | chr7.3:77740429-77740448 | MS.gene93623:intron | 30.0% | |
| AAGAAATAATTCCAACTTGC+AGG | + | chr7.3:77740889-77740908 | MS.gene93623:CDS | 30.0% | |
| AATCTTACCGTGATTTCAAT+TGG | - | chr7.3:77740374-77740393 | None:intergenic | 30.0% | |
| AATGATTAAAGACGTGTGTT+TGG | - | chr7.3:77741098-77741117 | None:intergenic | 30.0% | |
| AATGTGTATGTGTGAAATTG+AGG | + | chr7.3:77740158-77740177 | MS.gene93623:intron | 30.0% | |
| AGAATCAGACTATATTTGAG+AGG | + | chr7.3:77741981-77742000 | MS.gene93623:CDS | 30.0% | |
| ATTAAAGTTCTCAACTTTGG+TGG | - | chr7.3:77742104-77742123 | None:intergenic | 30.0% | |
| ATTATATTTAGGCATCAGTG+AGG | - | chr7.3:77741901-77741920 | None:intergenic | 30.0% | |
| ATTGAATGCAATCTCATGTT+CGG | + | chr7.3:77741425-77741444 | MS.gene93623:intron | 30.0% | |
| ATTTCTACTACGCTATGTAA+AGG | - | chr7.3:77740131-77740150 | None:intergenic | 30.0% | |
| CCCAATCTTACATAGTAAAA+GGG | - | chr7.3:77740724-77740743 | None:intergenic | 30.0% | |
| GAATCAGACTATATTTGAGA+GGG | + | chr7.3:77741982-77742001 | MS.gene93623:CDS | 30.0% | |
| GCTTAAAAAACTAGTTGAAG+AGG | + | chr7.3:77740746-77740765 | MS.gene93623:CDS | 30.0% | |
| TATGGTATAGTGAGGATATA+CGG | - | chr7.3:77741658-77741677 | None:intergenic | 30.0% | |
| TATTACCAATGTCTATGTGT+CGG | - | chr7.3:77741385-77741404 | None:intergenic | 30.0% | |
| TATTAGGAGTTAAGAGAAAG+TGG | - | chr7.3:77739998-77740017 | None:intergenic | 30.0% | |
| TTGTGGTTTCAAAACATGTA+TGG | - | chr7.3:77741676-77741695 | None:intergenic | 30.0% | |
| ! | CCCTTTTACTATGTAAGATT+GGG | + | chr7.3:77740721-77740740 | MS.gene93623:intron | 30.0% |
| ! | CCTTTTACTATGTAAGATTG+GGG | + | chr7.3:77740722-77740741 | MS.gene93623:intron | 30.0% |
| ! | CTTGATACTTCTGACTTTTA+TGG | + | chr7.3:77739937-77739956 | MS.gene93623:CDS | 30.0% |
| ! | TCCCTTTTACTATGTAAGAT+TGG | + | chr7.3:77740720-77740739 | MS.gene93623:intron | 30.0% |
| !!! | AGCATTTTTTTTGAAGGACA+CGG | - | chr7.3:77741617-77741636 | None:intergenic | 30.0% |
| AAAAGTGACACCAGATTGTA+TGG | - | chr7.3:77739917-77739936 | None:intergenic | 35.0% | |
| AAATCACTTAGCTCGATGTT+AGG | - | chr7.3:77740103-77740122 | None:intergenic | 35.0% | |
| AATTGCAGAAATTGAGTCCT+TGG | + | chr7.3:77742165-77742184 | MS.gene93623:CDS | 35.0% | |
| ACAGTAGGAAGAATGAAGTT+AGG | + | chr7.3:77739784-77739803 | MS.gene93623:CDS | 35.0% | |
| ACTAAATCAAACCTGCAAGT+TGG | - | chr7.3:77740903-77740922 | None:intergenic | 35.0% | |
| AGAATGAAGTTAGGATCACA+AGG | + | chr7.3:77739793-77739812 | MS.gene93623:CDS | 35.0% | |
| AGATCAAACTATGTGTAGCA+TGG | + | chr7.3:77741700-77741719 | MS.gene93623:intron | 35.0% | |
| AGTTAGAGAGAAGGTTGAAT+TGG | + | chr7.3:77740199-77740218 | MS.gene93623:CDS | 35.0% | |
| ATATAGTCTGATTCTGCTGT+AGG | - | chr7.3:77741976-77741995 | None:intergenic | 35.0% | |
| ATTGTTGCATATAGTCCTCT+TGG | + | chr7.3:77741187-77741206 | MS.gene93623:CDS | 35.0% | |
| ATTTGAGAGGGTTAATGAAC+TGG | + | chr7.3:77741994-77742013 | MS.gene93623:CDS | 35.0% | |
| CAATGAACTTCTTCTTGGAA+AGG | + | chr7.3:77739969-77739988 | MS.gene93623:CDS | 35.0% | |
| CATAGTTTGATCTGATCTTG+TGG | - | chr7.3:77741693-77741712 | None:intergenic | 35.0% | |
| CCCCAATCTTACATAGTAAA+AGG | - | chr7.3:77740725-77740744 | None:intergenic | 35.0% | |
| CTGAAACAAACCTATGCTTA+TGG | - | chr7.3:77740442-77740461 | None:intergenic | 35.0% | |
| CTTTCCAAGAAGAAGTTCAT+TGG | - | chr7.3:77739971-77739990 | None:intergenic | 35.0% | |
| GATGTTAGGCAATAACTTTG+TGG | - | chr7.3:77740089-77740108 | None:intergenic | 35.0% | |
| GATTGCTGAGAACTTTACAA+AGG | + | chr7.3:77741237-77741256 | MS.gene93623:CDS | 35.0% | |
| GTTGAATTGGCTACAAAGTT+TGG | + | chr7.3:77740212-77740231 | MS.gene93623:CDS | 35.0% | |
| TCCTTGGCAGATATTGTTAA+GGG | + | chr7.3:77742181-77742200 | MS.gene93623:CDS | 35.0% | |
| TCGTCTTCCAATTGAAATCA+CGG | + | chr7.3:77740364-77740383 | MS.gene93623:CDS | 35.0% | |
| TTATCTAGCATTTCTCTCTG+TGG | + | chr7.3:77740942-77740961 | MS.gene93623:intron | 35.0% | |
| TTGTTGCATATAGTCCTCTT+GGG | + | chr7.3:77741188-77741207 | MS.gene93623:CDS | 35.0% | |
| TTTCTTAGGGAACTTGGTAT+TGG | + | chr7.3:77741163-77741182 | MS.gene93623:intron | 35.0% | |
| ! | ATAAGTTATAAGGTGTCAGC+TGG | - | chr7.3:77741831-77741850 | None:intergenic | 35.0% |
| ! | ATCATGTCAAGTTCAGGTTT+AGG | - | chr7.3:77739877-77739896 | None:intergenic | 35.0% |
| ! | TAAGTTATAAGGTGTCAGCT+GGG | - | chr7.3:77741830-77741849 | None:intergenic | 35.0% |
| ! | TTTGGAGCCAAATATACTGA+TGG | + | chr7.3:77740230-77740249 | MS.gene93623:CDS | 35.0% |
| !! | CTTCCTGTTTAAGTTGTGTT+CGG | - | chr7.3:77741488-77741507 | None:intergenic | 35.0% |
| !!! | AGGTTTTCAGGTTGAAATCT+AGG | - | chr7.3:77741956-77741975 | None:intergenic | 35.0% |
| AATGAACTGGCTGCTAAGAA+GGG | + | chr7.3:77742007-77742026 | MS.gene93623:CDS | 40.0% | |
| ACACCGAACACAACTTAAAC+AGG | + | chr7.3:77741482-77741501 | MS.gene93623:intron | 40.0% | |
| ACCCTTAACAATATCTGCCA+AGG | - | chr7.3:77742185-77742204 | None:intergenic | 40.0% | |
| ACTATGGTCAAGAGATGTTG+AGG | + | chr7.3:77740866-77740885 | MS.gene93623:CDS | 40.0% | |
| AGAAGAAGTTCATTGGTGTG+AGG | - | chr7.3:77739964-77739983 | None:intergenic | 40.0% | |
| AGAGCAATCATGTCAAGTTC+AGG | - | chr7.3:77739883-77739902 | None:intergenic | 40.0% | |
| ATGAGCATGTCTGCTTTCTA+TGG | + | chr7.3:77739847-77739866 | MS.gene93623:CDS | 40.0% | |
| ATTCACCATGCCATACAATC+TGG | + | chr7.3:77739904-77739923 | MS.gene93623:CDS | 40.0% | |
| ATTGTTAAGGGTGACAGAAC+CGG | + | chr7.3:77742193-77742212 | MS.gene93623:CDS | 40.0% | |
| CACACCAATGAACTTCTTCT+TGG | + | chr7.3:77739964-77739983 | MS.gene93623:CDS | 40.0% | |
| CGAACACAACTTAAACAGGA+AGG | + | chr7.3:77741486-77741505 | MS.gene93623:intron | 40.0% | |
| GTATGTGTGAAATTGAGGAC+AGG | + | chr7.3:77740163-77740182 | MS.gene93623:intron | 40.0% | |
| GTCCTTGGCAGATATTGTTA+AGG | + | chr7.3:77742180-77742199 | MS.gene93623:CDS | 40.0% | |
| TAAATCTACGATCAGCTGCA+TGG | + | chr7.3:77740522-77740541 | MS.gene93623:intron | 40.0% | |
| TAATGAACTGGCTGCTAAGA+AGG | + | chr7.3:77742006-77742025 | MS.gene93623:CDS | 40.0% | |
| TCCAATAACAGCTGTGCAAT+TGG | + | chr7.3:77740836-77740855 | MS.gene93623:CDS | 40.0% | |
| TCCAATTGCACAGCTGTTAT+TGG | - | chr7.3:77740840-77740859 | None:intergenic | 40.0% | |
| TCTCATGTTCGGTATTGTGT+TGG | + | chr7.3:77741436-77741455 | MS.gene93623:intron | 40.0% | |
| TCTTCTGATTGTTGAAGCTG+AGG | - | chr7.3:77740802-77740821 | None:intergenic | 40.0% | |
| ! | GATGGTACATTTGAGATCTG+TGG | + | chr7.3:77740248-77740267 | MS.gene93623:CDS | 40.0% |
| ! | TGATTCTGCTGTAGGTTTTC+AGG | - | chr7.3:77741968-77741987 | None:intergenic | 40.0% |
| !! | AATTGAGGACAGGCTTTGAA+TGG | + | chr7.3:77740173-77740192 | MS.gene93623:intron | 40.0% |
| !!! | TAGAACATTTTGGGGTGCTA+AGG | - | chr7.3:77741534-77741553 | None:intergenic | 40.0% |
| AGGATATACGGAGATCACCA+CGG | - | chr7.3:77741646-77741665 | None:intergenic | 45.0% | |
| CAAGCTTCTCTCACATAAGC+TGG | - | chr7.3:77740278-77740297 | None:intergenic | 45.0% | |
| CATGCAACCAAGTCCTTGTA+AGG | - | chr7.3:77739830-77739849 | None:intergenic | 45.0% | |
| CATGGTTGTAAAGTCGTTGC+AGG | + | chr7.3:77741718-77741737 | MS.gene93623:intron | 45.0% | |
| CTTCCATGTAGGTTCCTTTC+CGG | - | chr7.3:77742215-77742234 | None:intergenic | 45.0% | |
| GAAAAGAATCCTCTCCCAAG+AGG | - | chr7.3:77741205-77741224 | None:intergenic | 45.0% | |
| GAAGTTAGGATCACAAGGCA+TGG | + | chr7.3:77739798-77739817 | MS.gene93623:CDS | 45.0% | |
| GAATGGAGGAGTTAGAGAGA+AGG | + | chr7.3:77740190-77740209 | MS.gene93623:CDS | 45.0% | |
| GATCAGCTGCATGGTAAAGT+CGG | + | chr7.3:77740531-77740550 | MS.gene93623:intron | 45.0% | |
| GTGTCAGATTCCTTCCATGT+AGG | - | chr7.3:77742226-77742245 | None:intergenic | 45.0% | |
| TAACAGCTGTGCAATTGGAG+TGG | + | chr7.3:77740841-77740860 | MS.gene93623:CDS | 45.0% | |
| TACTCCATCTCAGCTTGCAT+TGG | + | chr7.3:77742033-77742052 | MS.gene93623:CDS | 45.0% | |
| TGACACCAGATTGTATGGCA+TGG | - | chr7.3:77739912-77739931 | None:intergenic | 45.0% | |
| TGACACCGACACATAGACAT+TGG | + | chr7.3:77741377-77741396 | MS.gene93623:intron | 45.0% | |
| TGCAATTGGAGTGGTCACTA+TGG | + | chr7.3:77740850-77740869 | MS.gene93623:CDS | 45.0% | |
| ! | AGCATGCTTTTCCACAAACC+TGG | - | chr7.3:77741273-77741292 | None:intergenic | 45.0% |
| ! | ATGCTTTTCCACAAACCTGG+CGG | - | chr7.3:77741270-77741289 | None:intergenic | 45.0% |
| ! | GAAGTGTCCTTACAAGGACT+TGG | + | chr7.3:77739820-77739839 | MS.gene93623:CDS | 45.0% |
| ! | GCAGTTTTCCAAGACGAAAG+TGG | - | chr7.3:77742253-77742272 | None:intergenic | 45.0% |
| ! | GGGAGAGGATTCTTTTCATC+AGG | + | chr7.3:77741208-77741227 | MS.gene93623:CDS | 45.0% |
| ! | GTTCTCAACTTTGGTGGTTC+CGG | - | chr7.3:77742098-77742117 | None:intergenic | 45.0% |
| ! | GTTTTCCAAGACGAAAGTGG+TGG | - | chr7.3:77742250-77742269 | None:intergenic | 45.0% |
| ! | TTCTCAACTTTGGTGGTTCC+GGG | - | chr7.3:77742097-77742116 | None:intergenic | 45.0% |
| !! | GTTTGGTGTCAAACACGTGT+TGG | - | chr7.3:77741081-77741100 | None:intergenic | 45.0% |
| !! | ACAAATATAATATTATATTT+AGG | - | chr7.3:77741912-77741931 | None:intergenic | 5.0% |
| ACACTCCACCACTTTCGTCT+TGG | + | chr7.3:77742242-77742261 | MS.gene93623:CDS | 50.0% | |
| CATGCCAATGCAAGCTGAGA+TGG | - | chr7.3:77742040-77742059 | None:intergenic | 50.0% | |
| CGGAAAGGAACCTACATGGA+AGG | + | chr7.3:77742213-77742232 | MS.gene93623:CDS | 50.0% | |
| GAACCGGAAAGGAACCTACA+TGG | + | chr7.3:77742209-77742228 | MS.gene93623:CDS | 50.0% | |
| GCATATAGTCCTCTTGGGAG+AGG | + | chr7.3:77741193-77741212 | MS.gene93623:CDS | 50.0% | |
| TAAGGGTGACAGAACCGGAA+AGG | + | chr7.3:77742198-77742217 | MS.gene93623:CDS | 50.0% | |
| TACAAAGGATGACTACCGCC+AGG | + | chr7.3:77741252-77741271 | MS.gene93623:CDS | 50.0% | |
| TTGGCATGGCTTCATCACCA+AGG | + | chr7.3:77742052-77742071 | MS.gene93623:CDS | 50.0% | |
| ! | ACTTTGGTGGTTCCGGGTAT+CGG | - | chr7.3:77742091-77742110 | None:intergenic | 50.0% |
| ! | CATCTCAGCTTGCATTGGCA+TGG | + | chr7.3:77742038-77742057 | MS.gene93623:CDS | 50.0% |
| !! | GGCATGGAAGTGTCCTTACA+AGG | + | chr7.3:77739814-77739833 | MS.gene93623:CDS | 50.0% |
| !! | GTTCGGTGTGTGACATGTCT+CGG | - | chr7.3:77741471-77741490 | None:intergenic | 50.0% |
| !! | TGAGGACAGGCTTTGAATGG+AGG | + | chr7.3:77740176-77740195 | MS.gene93623:intron | 50.0% |
| GATGACTACCGCCAGGTTTG+TGG | + | chr7.3:77741259-77741278 | MS.gene93623:intron | 55.0% | |
| ! | CTTTGGTGGTTCCGGGTATC+GGG | - | chr7.3:77742090-77742109 | None:intergenic | 55.0% |
| GACGACGTGTGCCCGATACC+CGG | + | chr7.3:77742076-77742095 | MS.gene93623:CDS | 65.0% | |
| TCGGGCACACGTCGTCTCCT+TGG | - | chr7.3:77742072-77742091 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 77739778 | 77742272 | 77739778 | ID=MS.gene93623 |
| chr7.3 | mRNA | 77739778 | 77742272 | 77739778 | ID=MS.gene93623.t1;Parent=MS.gene93623 |
| chr7.3 | exon | 77739778 | 77739990 | 77739778 | ID=MS.gene93623.t1.exon1;Parent=MS.gene93623.t1 |
| chr7.3 | CDS | 77739778 | 77739990 | 77739778 | ID=cds.MS.gene93623.t1;Parent=MS.gene93623.t1 |
| chr7.3 | exon | 77740185 | 77740385 | 77740185 | ID=MS.gene93623.t1.exon2;Parent=MS.gene93623.t1 |
| chr7.3 | CDS | 77740185 | 77740385 | 77740185 | ID=cds.MS.gene93623.t1;Parent=MS.gene93623.t1 |
| chr7.3 | exon | 77740738 | 77740910 | 77740738 | ID=MS.gene93623.t1.exon3;Parent=MS.gene93623.t1 |
| chr7.3 | CDS | 77740738 | 77740910 | 77740738 | ID=cds.MS.gene93623.t1;Parent=MS.gene93623.t1 |
| chr7.3 | exon | 77741171 | 77741273 | 77741171 | ID=MS.gene93623.t1.exon4;Parent=MS.gene93623.t1 |
| chr7.3 | CDS | 77741171 | 77741273 | 77741171 | ID=cds.MS.gene93623.t1;Parent=MS.gene93623.t1 |
| chr7.3 | exon | 77741947 | 77742272 | 77741947 | ID=MS.gene93623.t1.exon5;Parent=MS.gene93623.t1 |
| chr7.3 | CDS | 77741947 | 77742272 | 77741947 | ID=cds.MS.gene93623.t1;Parent=MS.gene93623.t1 |
| Gene Sequence |
| Protein sequence |
