Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23854.t1 | XP_003621684.1 | 96.8 | 339 | 11 | 0 | 1 | 339 | 1 | 339 | 6.90E-191 | 676.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23854.t1 | Q7XT99 | 78.1 | 342 | 70 | 3 | 2 | 338 | 9 | 350 | 5.6e-157 | 555.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23854.t1 | A2Q5A8 | 96.8 | 339 | 11 | 0 | 1 | 339 | 1 | 339 | 5.0e-191 | 676.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23854.t1 | MTR_7g021680 | 96.755 | 339 | 11 | 0 | 1 | 339 | 1 | 339 | 0.0 | 682 |
| MS.gene23854.t1 | MTR_7g021820 | 96.755 | 339 | 11 | 0 | 1 | 339 | 1 | 339 | 0.0 | 682 |
| MS.gene23854.t1 | MTR_7g021850 | 90.237 | 338 | 31 | 2 | 1 | 337 | 1 | 337 | 0.0 | 637 |
| MS.gene23854.t1 | MTR_7g114990 | 57.831 | 332 | 131 | 6 | 7 | 332 | 16 | 344 | 7.10e-137 | 393 |
| MS.gene23854.t1 | MTR_7g114980 | 59.050 | 337 | 127 | 6 | 6 | 332 | 13 | 348 | 7.33e-137 | 392 |
| MS.gene23854.t1 | MTR_1g102750 | 57.440 | 336 | 135 | 6 | 4 | 332 | 5 | 339 | 1.82e-132 | 381 |
| MS.gene23854.t1 | MTR_7g114970 | 55.621 | 338 | 142 | 6 | 4 | 334 | 7 | 343 | 2.84e-128 | 370 |
| MS.gene23854.t1 | MTR_7g115010 | 53.593 | 334 | 131 | 6 | 7 | 332 | 12 | 329 | 2.96e-123 | 357 |
| MS.gene23854.t1 | MTR_7g114980 | 61.566 | 281 | 101 | 4 | 6 | 280 | 13 | 292 | 1.19e-118 | 344 |
| MS.gene23854.t1 | MTR_1g102750 | 59.929 | 282 | 109 | 4 | 4 | 282 | 5 | 285 | 1.27e-117 | 342 |
| MS.gene23854.t1 | MTR_7g114970 | 59.643 | 280 | 109 | 4 | 4 | 280 | 7 | 285 | 1.72e-116 | 338 |
| MS.gene23854.t1 | MTR_7g114970 | 59.498 | 279 | 109 | 4 | 4 | 279 | 7 | 284 | 1.35e-115 | 336 |
| MS.gene23854.t1 | MTR_7g021825 | 93.151 | 146 | 10 | 0 | 157 | 302 | 15 | 160 | 1.64e-99 | 291 |
| MS.gene23854.t1 | MTR_7g114970 | 57.490 | 247 | 99 | 4 | 93 | 334 | 4 | 249 | 5.99e-94 | 280 |
| MS.gene23854.t1 | MTR_7g114970 | 63.918 | 194 | 68 | 2 | 6 | 197 | 9 | 202 | 4.38e-85 | 256 |
| MS.gene23854.t1 | MTR_7g021670 | 90.769 | 130 | 12 | 0 | 1 | 130 | 1 | 130 | 4.02e-82 | 250 |
| MS.gene23854.t1 | MTR_7g021670 | 88.889 | 108 | 12 | 0 | 231 | 338 | 145 | 252 | 2.22e-63 | 202 |
| MS.gene23854.t1 | MTR_7g114970 | 56.281 | 199 | 81 | 4 | 138 | 331 | 1 | 198 | 7.30e-71 | 219 |
| MS.gene23854.t1 | MTR_7g021685 | 92.754 | 69 | 5 | 0 | 1 | 69 | 1 | 69 | 1.24e-41 | 141 |
| MS.gene23854.t1 | MTR_3g449790 | 30.904 | 343 | 180 | 11 | 6 | 314 | 37 | 356 | 5.64e-33 | 125 |
| MS.gene23854.t1 | MTR_3g449790 | 30.321 | 343 | 176 | 11 | 6 | 314 | 37 | 350 | 2.18e-32 | 124 |
| MS.gene23854.t1 | MTR_1g102740 | 47.222 | 108 | 47 | 2 | 232 | 332 | 3 | 107 | 8.54e-28 | 105 |
| MS.gene23854.t1 | MTR_3g092140 | 28.136 | 295 | 174 | 11 | 38 | 310 | 71 | 349 | 1.01e-22 | 99.0 |
| MS.gene23854.t1 | MTR_1g042730 | 27.794 | 349 | 199 | 13 | 8 | 309 | 65 | 407 | 1.13e-20 | 92.4 |
| MS.gene23854.t1 | MTR_1g047250 | 26.769 | 325 | 206 | 11 | 9 | 312 | 6 | 319 | 4.15e-20 | 89.7 |
| MS.gene23854.t1 | MTR_4g092750 | 30.556 | 216 | 135 | 7 | 8 | 213 | 5 | 215 | 1.61e-17 | 82.0 |
| MS.gene23854.t1 | MTR_4g092750 | 30.556 | 216 | 135 | 7 | 8 | 213 | 5 | 215 | 1.70e-17 | 82.4 |
| MS.gene23854.t1 | MTR_4g092750 | 30.556 | 216 | 135 | 7 | 8 | 213 | 5 | 215 | 3.14e-17 | 81.3 |
| MS.gene23854.t1 | MTR_8g088160 | 25.092 | 271 | 153 | 10 | 14 | 238 | 49 | 315 | 4.54e-12 | 66.6 |
| MS.gene23854.t1 | MTR_6g073110 | 24.047 | 341 | 199 | 12 | 11 | 329 | 12 | 314 | 1.47e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23854.t1 | AT1G60710 | 78.402 | 338 | 70 | 2 | 4 | 338 | 7 | 344 | 0.0 | 548 |
| MS.gene23854.t1 | AT1G60730 | 77.811 | 338 | 72 | 2 | 4 | 338 | 7 | 344 | 0.0 | 543 |
| MS.gene23854.t1 | AT1G60690 | 75.811 | 339 | 79 | 2 | 4 | 339 | 7 | 345 | 0.0 | 539 |
| MS.gene23854.t1 | AT1G60730 | 73.464 | 358 | 72 | 3 | 4 | 338 | 7 | 364 | 0.0 | 531 |
| MS.gene23854.t1 | AT1G60680 | 76.401 | 339 | 76 | 3 | 4 | 338 | 7 | 345 | 0.0 | 531 |
| MS.gene23854.t1 | AT1G10810 | 72.485 | 338 | 90 | 2 | 4 | 338 | 7 | 344 | 0.0 | 504 |
| MS.gene23854.t1 | AT1G60750 | 72.861 | 339 | 71 | 4 | 4 | 338 | 8 | 329 | 6.81e-178 | 496 |
| MS.gene23854.t1 | AT1G10810 | 72.059 | 272 | 73 | 2 | 70 | 338 | 21 | 292 | 6.05e-142 | 403 |
| MS.gene23854.t1 | AT1G60680 | 78.947 | 228 | 46 | 2 | 4 | 229 | 7 | 234 | 1.29e-128 | 368 |
| MS.gene23854.t1 | AT1G10810 | 74.138 | 232 | 59 | 1 | 4 | 234 | 7 | 238 | 6.38e-122 | 351 |
| MS.gene23854.t1 | AT1G60730 | 75.540 | 139 | 33 | 1 | 4 | 141 | 7 | 145 | 1.02e-71 | 221 |
| MS.gene23854.t1 | AT5G53580 | 31.379 | 290 | 155 | 11 | 46 | 310 | 80 | 350 | 7.07e-28 | 112 |
| MS.gene23854.t1 | AT1G06690 | 28.228 | 333 | 202 | 11 | 6 | 314 | 48 | 367 | 3.36e-27 | 110 |
| MS.gene23854.t1 | AT1G04690 | 27.673 | 318 | 180 | 11 | 8 | 296 | 5 | 301 | 1.52e-23 | 99.4 |
| MS.gene23854.t1 | AT4G33670 | 25.915 | 328 | 209 | 10 | 1 | 314 | 1 | 308 | 1.52e-22 | 96.7 |
| MS.gene23854.t1 | AT1G04420 | 26.197 | 355 | 207 | 14 | 8 | 314 | 60 | 407 | 2.17e-20 | 91.7 |
| MS.gene23854.t1 | AT2G21260 | 24.926 | 337 | 163 | 11 | 11 | 309 | 6 | 290 | 2.87e-13 | 70.1 |
| MS.gene23854.t1 | AT2G21250 | 24.702 | 336 | 165 | 11 | 11 | 309 | 6 | 290 | 8.86e-12 | 65.5 |
Find 82 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATTTCCCTTCAGTATATT+TGG | 0.154284 | 7.1:-76682198 | None:intergenic |
| TCCAATTGCACAGCTGTTAT+TGG | 0.154954 | 7.1:-76682613 | None:intergenic |
| TTGATTCAAGTTCTCAATTT+TGG | 0.179947 | 7.1:-76684293 | None:intergenic |
| CACACCAATGAAGTTCTTCT+TGG | 0.223012 | 7.1:+76681979 | MS.gene23854:CDS |
| CTTGATACTTCTGACATCTA+TGG | 0.265916 | 7.1:+76681952 | MS.gene23854:CDS |
| ATACTCCACCACTCTCTTCT+TGG | 0.280266 | 7.1:+76684434 | MS.gene23854:CDS |
| GTTGAATTGGCTACTAAGTT+TGG | 0.287118 | 7.1:+76682173 | MS.gene23854:CDS |
| AAGAAATAATTCCAACTTGC+AGG | 0.330054 | 7.1:+76682665 | MS.gene23854:CDS |
| TTTCTTAGGGAACTTGGTAT+TGG | 0.337507 | 7.1:+76682959 | MS.gene23854:intron |
| ATTTGACAAAGTTAATGAAT+TGG | 0.354570 | 7.1:+76684183 | MS.gene23854:CDS |
| GTCTTTAGCAGATGCTGTTA+AGG | 0.356223 | 7.1:+76684369 | MS.gene23854:CDS |
| TCCAATAACAGCTGTGCAAT+TGG | 0.363190 | 7.1:+76682612 | MS.gene23854:CDS |
| ATCATGTCAGGTTCAGGTTT+AGG | 0.367686 | 7.1:-76681889 | None:intergenic |
| GCTGTTAAGGGTGGTAGATA+TGG | 0.379383 | 7.1:+76684382 | MS.gene23854:CDS |
| AGAGCAATCATGTCAGGTTC+AGG | 0.397066 | 7.1:-76681895 | None:intergenic |
| CTTTCCAAGAAGAACTTCAT+TGG | 0.408269 | 7.1:-76681983 | None:intergenic |
| TGTGAGAGAGAAGGTTGAAT+TGG | 0.411679 | 7.1:+76682160 | MS.gene23854:CDS |
| CTGTTAAGGGTGGTAGATAT+GGG | 0.417262 | 7.1:+76684383 | MS.gene23854:CDS |
| TAAACTAACACAAGAAGAAA+TGG | 0.436815 | 7.1:+76684336 | MS.gene23854:CDS |
| TCTTTAGCAGATGCTGTTAA+GGG | 0.437336 | 7.1:+76684370 | MS.gene23854:CDS |
| TTTGAGATCTGTGGTGATCC+AGG | 0.439708 | 7.1:+76682218 | MS.gene23854:CDS |
| ATGAGCATGTCAGCTTTCTA+TGG | 0.448350 | 7.1:+76681862 | MS.gene23854:CDS |
| ATATAGTCTGATTCTGCTGC+AGG | 0.450000 | 7.1:-76684162 | None:intergenic |
| AAAGGTGACACCGGATTGTA+TGG | 0.452653 | 7.1:-76681929 | None:intergenic |
| CATGCATCCAAGTCCTTGTA+AGG | 0.457414 | 7.1:-76681842 | None:intergenic |
| AAAGATGTGTGCCCAATACC+TGG | 0.465557 | 7.1:+76684265 | MS.gene23854:CDS |
| ATAGTTGCATATAGTCCTCT+TGG | 0.466082 | 7.1:+76682983 | MS.gene23854:CDS |
| TAATGAATTGGCTACAAAGA+AGG | 0.471421 | 7.1:+76684195 | MS.gene23854:CDS |
| ACTTGGCACAGGATGATTAC+CGG | 0.478397 | 7.1:+76683044 | MS.gene23854:CDS |
| ACAGTGGGAAGAATGAAGTT+AGG | 0.493900 | 7.1:+76681799 | MS.gene23854:CDS |
| TTTGAAGGGTGTGAGAGAGA+AGG | 0.495752 | 7.1:+76682151 | MS.gene23854:CDS |
| CAAGCTTCTCTCACATAACC+TGG | 0.499607 | 7.1:-76682236 | None:intergenic |
| TGCAATTGGAGTGGTCACTA+TGG | 0.500317 | 7.1:+76682626 | MS.gene23854:CDS |
| TCTTCTGATTGTTGCAGCTG+AGG | 0.505290 | 7.1:-76682575 | None:intergenic |
| AACAAAGTTACTTGACAACT+TGG | 0.517103 | 7.1:+76683027 | MS.gene23854:CDS |
| GAAGTGTCCTTACAAGGACT+TGG | 0.517209 | 7.1:+76681835 | MS.gene23854:CDS |
| CTTAAGAAACTTGTTGAAGA+GGG | 0.519358 | 7.1:+76682523 | MS.gene23854:CDS |
| CAATGAAGTTCTTCTTGGAA+AGG | 0.524852 | 7.1:+76681984 | MS.gene23854:CDS |
| AATGAATTGGCTACAAAGAA+GGG | 0.535628 | 7.1:+76684196 | MS.gene23854:CDS |
| TAGTTGCATATAGTCCTCTT+GGG | 0.540181 | 7.1:+76682984 | MS.gene23854:CDS |
| ACTAAATCACACCTGCAAGT+TGG | 0.549393 | 7.1:-76682676 | None:intergenic |
| ATTCACCATGCCATACAATC+CGG | 0.549872 | 7.1:+76681919 | MS.gene23854:CDS |
| GCATATAGTCCTCTTGGGCG+AGG | 0.551187 | 7.1:+76682989 | MS.gene23854:CDS |
| GATGTCAGAAGTATCAAGAA+AGG | 0.555456 | 7.1:-76681947 | None:intergenic |
| TGAATGAGAGCAATCATGTC+AGG | 0.558885 | 7.1:-76681901 | None:intergenic |
| GGGATGGAAGTGTCCTTACA+AGG | 0.559327 | 7.1:+76681829 | MS.gene23854:CDS |
| CACCTCAGCTTGCACTAGCA+TGG | 0.559570 | 7.1:+76684227 | MS.gene23854:CDS |
| GAAGTTAGGATCACAAGGGA+TGG | 0.564034 | 7.1:+76681813 | MS.gene23854:CDS |
| GAGAACTTGAATCAAAACAT+TGG | 0.571832 | 7.1:+76684301 | MS.gene23854:CDS |
| GAAGAACTTCATTGGTGTGA+GGG | 0.571972 | 7.1:-76681975 | None:intergenic |
| TTTGGAGCCAAATATACTGA+AGG | 0.575214 | 7.1:+76682191 | MS.gene23854:CDS |
| GCTTAAGAAACTTGTTGAAG+AGG | 0.577571 | 7.1:+76682522 | MS.gene23854:CDS |
| CATGCTAGTGCAAGCTGAGG+TGG | 0.577629 | 7.1:-76684226 | None:intergenic |
| GTCAAAGCAATGGCAACAGT+GGG | 0.578398 | 7.1:+76681784 | None:intergenic |
| GTTACTTGACAACTTGGCAC+AGG | 0.578762 | 7.1:+76683033 | MS.gene23854:CDS |
| GTCACTATGGTCAAGAGATG+TGG | 0.578807 | 7.1:+76682639 | MS.gene23854:CDS |
| ATGTCAGGTTCAGGTTTAGG+AGG | 0.578905 | 7.1:-76681886 | None:intergenic |
| AGTCAAAGCAATGGCAACAG+TGG | 0.590506 | 7.1:+76681783 | None:intergenic |
| TCGTCTTCCAATTGAAGTCA+CGG | 0.594299 | 7.1:+76682325 | MS.gene23854:CDS |
| TATGTGAGAGAAGCTTGTGA+GGG | 0.599905 | 7.1:+76682242 | MS.gene23854:CDS |
| TTATGTGAGAGAAGCTTGTG+AGG | 0.606963 | 7.1:+76682241 | MS.gene23854:CDS |
| AAAATACATCGGTTTGTCTG+AGG | 0.609392 | 7.1:+76682552 | MS.gene23854:CDS |
| TTAAGAAACTTGTTGAAGAG+GGG | 0.610574 | 7.1:+76682524 | MS.gene23854:CDS |
| TTGGAGCCAAATATACTGAA+GGG | 0.614467 | 7.1:+76682192 | MS.gene23854:CDS |
| AGAATGAAGTTAGGATCACA+AGG | 0.616212 | 7.1:+76681808 | MS.gene23854:CDS |
| GGCACAGGATGATTACCGGA+AGG | 0.619947 | 7.1:+76683048 | MS.gene23854:CDS |
| AGAAGAACTTCATTGGTGTG+AGG | 0.636443 | 7.1:-76681976 | None:intergenic |
| GAAAAGAATCCTCGCCCAAG+AGG | 0.639338 | 7.1:-76682998 | None:intergenic |
| TTAGCAGATGCTGTTAAGGG+TGG | 0.639881 | 7.1:+76684373 | MS.gene23854:CDS |
| GAGGGGAAAATAAAATACAT+CGG | 0.640822 | 7.1:+76682541 | MS.gene23854:CDS |
| ACTATGGTCAAGAGATGTGG+AGG | 0.647256 | 7.1:+76682642 | MS.gene23854:CDS |
| GCTTTCCAAGAAGAGAGTGG+TGG | 0.651055 | 7.1:-76684439 | None:intergenic |
| ATGGGGATGAGATAAGTACA+TGG | 0.656484 | 7.1:+76684401 | MS.gene23854:CDS |
| TAACAGCTGTGCAATTGGAG+TGG | 0.661184 | 7.1:+76682617 | MS.gene23854:CDS |
| ACAGCTTTCCAAGAAGAGAG+TGG | 0.666396 | 7.1:-76684442 | None:intergenic |
| AGTATCAAGAAAGGTGACAC+CGG | 0.678674 | 7.1:-76681938 | None:intergenic |
| TGTTAAGGGTGGTAGATATG+GGG | 0.698011 | 7.1:+76684384 | MS.gene23854:CDS |
| GAAGGGAAATTTGAGATCTG+TGG | 0.702377 | 7.1:+76682209 | MS.gene23854:CDS |
| CTAGCATGGCTTCATCACCA+AGG | 0.708876 | 7.1:+76684241 | MS.gene23854:CDS |
| TGACACCGGATTGTATGGCA+TGG | 0.733523 | 7.1:-76681924 | None:intergenic |
| AGCCATGCTAGTGCAAGCTG+AGG | 0.753897 | 7.1:-76684229 | None:intergenic |
| GAATGAAGTTAGGATCACAA+GGG | 0.757296 | 7.1:+76681809 | MS.gene23854:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTCAAAATAAATATATAGT+CGG | + | chr7.1:76683292-76683311 | MS.gene23854:intron | 10.0% |
| !!! | ATTATTTTGATATTTTGATT+TGG | + | chr7.1:76682063-76682082 | MS.gene23854:intron | 10.0% |
| !! | AATCAAAAGAAAAACTAAAA+GGG | - | chr7.1:76682026-76682045 | None:intergenic | 15.0% |
| !! | ACAATTTAAACAAGTAAATT+TGG | - | chr7.1:76683235-76683254 | None:intergenic | 15.0% |
| !! | CATACATATATATAAGATTA+AGG | - | chr7.1:76684098-76684117 | None:intergenic | 15.0% |
| !! | TAATCAAAAGAAAAACTAAA+AGG | - | chr7.1:76682027-76682046 | None:intergenic | 15.0% |
| !! | TACTATATAACAAAACATAA+TGG | - | chr7.1:76682708-76682727 | None:intergenic | 15.0% |
| !! | TTCATTTCATATCTTAAATT+AGG | - | chr7.1:76682427-76682446 | None:intergenic | 15.0% |
| !!! | AAATTCTCTTTAATTTGATT+TGG | + | chr7.1:76682350-76682369 | MS.gene23854:intron | 15.0% |
| !!! | ATTTATGATTTTCTTTCTTA+GGG | + | chr7.1:76682946-76682965 | MS.gene23854:intron | 15.0% |
| !! | ATATATAAAATGACAATGTG+TGG | + | chr7.1:76682459-76682478 | MS.gene23854:intron | 20.0% |
| !! | ATTTATCACATGTTCTTTAA+TGG | + | chr7.1:76683662-76683681 | MS.gene23854:intron | 20.0% |
| !! | ATTTGACAAAGTTAATGAAT+TGG | + | chr7.1:76684183-76684202 | MS.gene23854:CDS | 20.0% |
| !! | TAAAGAACATGTGATAAATA+GGG | - | chr7.1:76683661-76683680 | None:intergenic | 20.0% |
| !! | TTAAAGAACATGTGATAAAT+AGG | - | chr7.1:76683662-76683681 | None:intergenic | 20.0% |
| !! | TTATATAGTATTTCTCTTTC+TGG | + | chr7.1:76682718-76682737 | MS.gene23854:intron | 20.0% |
| !! | TTGAACATAATTACATATGT+TGG | + | chr7.1:76682844-76682863 | MS.gene23854:intron | 20.0% |
| !!! | GATTGTGAATTTTTATGAAT+AGG | + | chr7.1:76682127-76682146 | MS.gene23854:intron | 20.0% |
| !!! | GATTTATGATTTTCTTTCTT+AGG | + | chr7.1:76682945-76682964 | MS.gene23854:intron | 20.0% |
| !!! | TTCTTTTGATTAGAATTTCT+GGG | + | chr7.1:76682035-76682054 | MS.gene23854:intron | 20.0% |
| !!! | TTTCTTTTGATTAGAATTTC+TGG | + | chr7.1:76682034-76682053 | MS.gene23854:intron | 20.0% |
| ! | AAAGAACATGTGATAAATAG+GGG | - | chr7.1:76683660-76683679 | None:intergenic | 25.0% |
| ! | AAATATGCAACTAAACCAAA+AGG | - | chr7.1:76682403-76682422 | None:intergenic | 25.0% |
| ! | AAATTTCCCTTCAGTATATT+TGG | - | chr7.1:76682201-76682220 | None:intergenic | 25.0% |
| ! | TAAACTAACACAAGAAGAAA+TGG | + | chr7.1:76684336-76684355 | MS.gene23854:CDS | 25.0% |
| ! | TAGAACTAAGTGGTTAATTA+GGG | - | chr7.1:76683560-76683579 | None:intergenic | 25.0% |
| ! | TGACTTACCACAAATATTAT+GGG | + | chr7.1:76683685-76683704 | MS.gene23854:intron | 25.0% |
| ! | TTTAAATTGTGTAATGTGTG+TGG | + | chr7.1:76683245-76683264 | MS.gene23854:intron | 25.0% |
| !! | TCTATTTCCAAACTGTTTTA+TGG | - | chr7.1:76683332-76683351 | None:intergenic | 25.0% |
| !! | TGATCATATTAATCGTTTTC+AGG | + | chr7.1:76683128-76683147 | MS.gene23854:intron | 25.0% |
| !! | TTTTAGTCCATAAAACAGTT+TGG | + | chr7.1:76683322-76683341 | MS.gene23854:intron | 25.0% |
| !!! | TTGATTCAAGTTCTCAATTT+TGG | - | chr7.1:76684296-76684315 | None:intergenic | 25.0% |
| !!! | TTTTATGAATAGGCTTTGAA+GGG | + | chr7.1:76682137-76682156 | MS.gene23854:intron | 25.0% |
| !!! | TTTTTATGAATAGGCTTTGA+AGG | + | chr7.1:76682136-76682155 | MS.gene23854:intron | 25.0% |
| AACAAAGTTACTTGACAACT+TGG | + | chr7.1:76683027-76683046 | MS.gene23854:CDS | 30.0% | |
| AAGAAATAATTCCAACTTGC+AGG | + | chr7.1:76682665-76682684 | MS.gene23854:CDS | 30.0% | |
| AATGAATTGGCTACAAAGAA+GGG | + | chr7.1:76684196-76684215 | MS.gene23854:CDS | 30.0% | |
| ATCAACACATATTGATCACA+GGG | - | chr7.1:76683426-76683445 | None:intergenic | 30.0% | |
| ATGAATGCTGCTGAAAAATA+CGG | + | chr7.1:76683848-76683867 | MS.gene23854:intron | 30.0% | |
| CAACTAAGAAATGTTGTAGA+TGG | - | chr7.1:76683457-76683476 | None:intergenic | 30.0% | |
| CAGAACTCTATAATACAAAC+AGG | + | chr7.1:76683399-76683418 | MS.gene23854:intron | 30.0% | |
| CTACAGAATATGGTATGTTA+TGG | - | chr7.1:76683740-76683759 | None:intergenic | 30.0% | |
| GAGAACTTGAATCAAAACAT+TGG | + | chr7.1:76684301-76684320 | MS.gene23854:CDS | 30.0% | |
| GAGGGGAAAATAAAATACAT+CGG | + | chr7.1:76682541-76682560 | MS.gene23854:CDS | 30.0% | |
| GATATCAATGTAGAACTAAG+TGG | - | chr7.1:76683570-76683589 | None:intergenic | 30.0% | |
| GGATACACATAAATCAATCA+TGG | + | chr7.1:76683869-76683888 | MS.gene23854:intron | 30.0% | |
| GTAGAACTAAGTGGTTAATT+AGG | - | chr7.1:76683561-76683580 | None:intergenic | 30.0% | |
| GTGACTTACCACAAATATTA+TGG | + | chr7.1:76683684-76683703 | MS.gene23854:intron | 30.0% | |
| TAAAATGCAGCTACAGAATA+TGG | - | chr7.1:76683750-76683769 | None:intergenic | 30.0% | |
| TAAGAAATGTTGTAGATGGT+AGG | - | chr7.1:76683453-76683472 | None:intergenic | 30.0% | |
| TAATGAATTGGCTACAAAGA+AGG | + | chr7.1:76684195-76684214 | MS.gene23854:CDS | 30.0% | |
| TATCAACACATATTGATCAC+AGG | - | chr7.1:76683427-76683446 | None:intergenic | 30.0% | |
| TCTTATCAAATATCTCCTCA+CGG | - | chr7.1:76683597-76683616 | None:intergenic | 30.0% | |
| ! | AATTTTACCGTGACTTCAAT+TGG | - | chr7.1:76682335-76682354 | None:intergenic | 30.0% |
| ! | ATATTCTGTAGCTGCATTTT+AGG | + | chr7.1:76683749-76683768 | MS.gene23854:intron | 30.0% |
| ! | ATTTTCTTTCTTAGGGAACT+TGG | + | chr7.1:76682953-76682972 | MS.gene23854:intron | 30.0% |
| ! | TGGGTTTTCTTTGTAAGATT+GGG | + | chr7.1:76682497-76682516 | MS.gene23854:intron | 30.0% |
| ! | TTGCATCAGATTATACCTTT+TGG | + | chr7.1:76682385-76682404 | MS.gene23854:intron | 30.0% |
| ! | TTTTTGTTGCATGTGATATG+AGG | + | chr7.1:76682086-76682105 | MS.gene23854:intron | 30.0% |
| !! | CTTAAGAAACTTGTTGAAGA+GGG | + | chr7.1:76682523-76682542 | MS.gene23854:CDS | 30.0% |
| !! | TTAAGAAACTTGTTGAAGAG+GGG | + | chr7.1:76682524-76682543 | MS.gene23854:CDS | 30.0% |
| ACACAGTCCCATAATATTTG+TGG | - | chr7.1:76683695-76683714 | None:intergenic | 35.0% | |
| ACTAAAAGGGTAAGAGAAAG+TGG | - | chr7.1:76682013-76682032 | None:intergenic | 35.0% | |
| ACTTACATCGTTGATCAATC+AGG | + | chr7.1:76683920-76683939 | MS.gene23854:intron | 35.0% | |
| AGAATGAAGTTAGGATCACA+AGG | + | chr7.1:76681808-76681827 | MS.gene23854:CDS | 35.0% | |
| ATAGTTGCATATAGTCCTCT+TGG | + | chr7.1:76682983-76683002 | MS.gene23854:CDS | 35.0% | |
| CAATGAAGTTCTTCTTGGAA+AGG | + | chr7.1:76681984-76682003 | MS.gene23854:CDS | 35.0% | |
| CTTACATCGTTGATCAATCA+GGG | + | chr7.1:76683921-76683940 | MS.gene23854:intron | 35.0% | |
| CTTGATACTTCTGACATCTA+TGG | + | chr7.1:76681952-76681971 | MS.gene23854:CDS | 35.0% | |
| CTTTCCAAGAAGAACTTCAT+TGG | - | chr7.1:76681986-76682005 | None:intergenic | 35.0% | |
| GAATGAAGTTAGGATCACAA+GGG | + | chr7.1:76681809-76681828 | MS.gene23854:CDS | 35.0% | |
| GATCAACGATGTAAGTTAGA+GGG | - | chr7.1:76683916-76683935 | None:intergenic | 35.0% | |
| GGTTAATTAGGGAAAGTGAA+AGG | - | chr7.1:76683549-76683568 | None:intergenic | 35.0% | |
| GTTGAATTGGCTACTAAGTT+TGG | + | chr7.1:76682173-76682192 | MS.gene23854:CDS | 35.0% | |
| TAGTTGCATATAGTCCTCTT+GGG | + | chr7.1:76682984-76683003 | MS.gene23854:CDS | 35.0% | |
| TCTTTAGCAGATGCTGTTAA+GGG | + | chr7.1:76684370-76684389 | MS.gene23854:CDS | 35.0% | |
| TGAAAGGATAGTATGTACAG+TGG | - | chr7.1:76683533-76683552 | None:intergenic | 35.0% | |
| TGATCAACGATGTAAGTTAG+AGG | - | chr7.1:76683917-76683936 | None:intergenic | 35.0% | |
| TTCATAGGATACAAGATGTC+AGG | - | chr7.1:76683787-76683806 | None:intergenic | 35.0% | |
| TTGGAGCCAAATATACTGAA+GGG | + | chr7.1:76682192-76682211 | MS.gene23854:CDS | 35.0% | |
| TTGTGATAGACCAAACAAAG+AGG | - | chr7.1:76683964-76683983 | None:intergenic | 35.0% | |
| TTTCTTAGGGAACTTGGTAT+TGG | + | chr7.1:76682959-76682978 | MS.gene23854:intron | 35.0% | |
| ! | ATTTGGATTAAAGGCGTGTT+TGG | - | chr7.1:76682890-76682909 | None:intergenic | 35.0% |
| ! | CTGGGTTTTCTTTGTAAGAT+TGG | + | chr7.1:76682496-76682515 | MS.gene23854:intron | 35.0% |
| ! | GCACTGACAATTTGGATTAA+AGG | - | chr7.1:76682899-76682918 | None:intergenic | 35.0% |
| ! | GGGTTTTCTTTGTAAGATTG+GGG | + | chr7.1:76682498-76682517 | MS.gene23854:intron | 35.0% |
| ! | TTTGGAGCCAAATATACTGA+AGG | + | chr7.1:76682191-76682210 | MS.gene23854:CDS | 35.0% |
| !! | AAAATACATCGGTTTGTCTG+AGG | + | chr7.1:76682552-76682571 | MS.gene23854:CDS | 35.0% |
| !! | AAATTTGGTAGTTCTGACCA+TGG | - | chr7.1:76683220-76683239 | None:intergenic | 35.0% |
| !! | GATGTCAGAAGTATCAAGAA+AGG | - | chr7.1:76681950-76681969 | None:intergenic | 35.0% |
| !! | GCTTAAGAAACTTGTTGAAG+AGG | + | chr7.1:76682522-76682541 | MS.gene23854:CDS | 35.0% |
| !! | TCTATGTAGCACTGACAATT+TGG | - | chr7.1:76682907-76682926 | None:intergenic | 35.0% |
| !!! | AATTAGTTTTTGCATGCCAG+TGG | - | chr7.1:76682807-76682826 | None:intergenic | 35.0% |
| ACAGTGGGAAGAATGAAGTT+AGG | + | chr7.1:76681799-76681818 | MS.gene23854:CDS | 40.0% | |
| ACATTGATATCTGAACCGTG+AGG | + | chr7.1:76683579-76683598 | MS.gene23854:intron | 40.0% | |
| ACTAAATCACACCTGCAAGT+TGG | - | chr7.1:76682679-76682698 | None:intergenic | 40.0% | |
| AGAAGAACTTCATTGGTGTG+AGG | - | chr7.1:76681979-76681998 | None:intergenic | 40.0% | |
| AGTATCAAGAAAGGTGACAC+CGG | - | chr7.1:76681941-76681960 | None:intergenic | 40.0% | |
| ATATAGTCTGATTCTGCTGC+AGG | - | chr7.1:76684165-76684184 | None:intergenic | 40.0% | |
| ATGAGCATGTCAGCTTTCTA+TGG | + | chr7.1:76681862-76681881 | MS.gene23854:CDS | 40.0% | |
| ATGGGGATGAGATAAGTACA+TGG | + | chr7.1:76684401-76684420 | MS.gene23854:CDS | 40.0% | |
| ATTCACCATGCCATACAATC+CGG | + | chr7.1:76681919-76681938 | MS.gene23854:CDS | 40.0% | |
| CACACCAATGAAGTTCTTCT+TGG | + | chr7.1:76681979-76681998 | MS.gene23854:CDS | 40.0% | |
| CATTCTTTCCACAAACCTTC+CGG | - | chr7.1:76683066-76683085 | None:intergenic | 40.0% | |
| CTCATAACAGCCTCTTTGTT+TGG | + | chr7.1:76683951-76683970 | MS.gene23854:intron | 40.0% | |
| CTGTTAAGGGTGGTAGATAT+GGG | + | chr7.1:76684383-76684402 | MS.gene23854:CDS | 40.0% | |
| GAAGAACTTCATTGGTGTGA+GGG | - | chr7.1:76681978-76681997 | None:intergenic | 40.0% | |
| GTCTTTAGCAGATGCTGTTA+AGG | + | chr7.1:76684369-76684388 | MS.gene23854:CDS | 40.0% | |
| GTTGTATCCGATGTTTGTGT+TGG | - | chr7.1:76683813-76683832 | None:intergenic | 40.0% | |
| TATGTGAGAGAAGCTTGTGA+GGG | + | chr7.1:76682242-76682261 | MS.gene23854:CDS | 40.0% | |
| TCCAATAACAGCTGTGCAAT+TGG | + | chr7.1:76682612-76682631 | MS.gene23854:CDS | 40.0% | |
| TCCAATTGCACAGCTGTTAT+TGG | - | chr7.1:76682616-76682635 | None:intergenic | 40.0% | |
| TCGTCTTCCAATTGAAGTCA+CGG | + | chr7.1:76682325-76682344 | MS.gene23854:CDS | 40.0% | |
| TGAATGAGAGCAATCATGTC+AGG | - | chr7.1:76681904-76681923 | None:intergenic | 40.0% | |
| TGTGAGAGAGAAGGTTGAAT+TGG | + | chr7.1:76682160-76682179 | MS.gene23854:CDS | 40.0% | |
| TGTTAAGGGTGGTAGATATG+GGG | + | chr7.1:76684384-76684403 | MS.gene23854:CDS | 40.0% | |
| TTATGTGAGAGAAGCTTGTG+AGG | + | chr7.1:76682241-76682260 | MS.gene23854:CDS | 40.0% | |
| ! | ATCATGTCAGGTTCAGGTTT+AGG | - | chr7.1:76681892-76681911 | None:intergenic | 40.0% |
| ! | GAAGGGAAATTTGAGATCTG+TGG | + | chr7.1:76682209-76682228 | MS.gene23854:CDS | 40.0% |
| ! | GTGGTGACTTCAACTTTTCT+GGG | + | chr7.1:76682478-76682497 | MS.gene23854:intron | 40.0% |
| ! | TGAAGCACCAACACAAACAT+CGG | + | chr7.1:76683803-76683822 | MS.gene23854:intron | 40.0% |
| ! | TGTGGTGACTTCAACTTTTC+TGG | + | chr7.1:76682477-76682496 | MS.gene23854:intron | 40.0% |
| ! | TGTTTGTGTTGGTGCTTCAT+AGG | - | chr7.1:76683802-76683821 | None:intergenic | 40.0% |
| ! | TTTTGGTCGTTCCAGGTATT+GGG | - | chr7.1:76684279-76684298 | None:intergenic | 40.0% |
| !! | ATTTTGGTCGTTCCAGGTAT+TGG | - | chr7.1:76684280-76684299 | None:intergenic | 40.0% |
| !! | TGTTGGTGTCATCTTAGTGT+CGG | + | chr7.1:76682861-76682880 | MS.gene23854:intron | 40.0% |
| !! | TTCTCAATTTTGGTCGTTCC+AGG | - | chr7.1:76684286-76684305 | None:intergenic | 40.0% |
| !!! | AGGTTTTCAGGTTGAAATCG+AGG | - | chr7.1:76684145-76684164 | None:intergenic | 40.0% |
| AAAGATGTGTGCCCAATACC+TGG | + | chr7.1:76684265-76684284 | MS.gene23854:CDS | 45.0% | |
| AAAGGTGACACCGGATTGTA+TGG | - | chr7.1:76681932-76681951 | None:intergenic | 45.0% | |
| ACAGCTTTCCAAGAAGAGAG+TGG | - | chr7.1:76684445-76684464 | None:intergenic | 45.0% | |
| ACTATGGTCAAGAGATGTGG+AGG | + | chr7.1:76682642-76682661 | MS.gene23854:CDS | 45.0% | |
| ACTTGGCACAGGATGATTAC+CGG | + | chr7.1:76683044-76683063 | MS.gene23854:CDS | 45.0% | |
| AGAGCAATCATGTCAGGTTC+AGG | - | chr7.1:76681898-76681917 | None:intergenic | 45.0% | |
| ATACTCCACCACTCTCTTCT+TGG | + | chr7.1:76684434-76684453 | MS.gene23854:CDS | 45.0% | |
| CAAGCTTCTCTCACATAACC+TGG | - | chr7.1:76682239-76682258 | None:intergenic | 45.0% | |
| CATGCATCCAAGTCCTTGTA+AGG | - | chr7.1:76681845-76681864 | None:intergenic | 45.0% | |
| GAAGTTAGGATCACAAGGGA+TGG | + | chr7.1:76681813-76681832 | MS.gene23854:CDS | 45.0% | |
| GATGATTACCGGAAGGTTTG+TGG | + | chr7.1:76683055-76683074 | MS.gene23854:intron | 45.0% | |
| GCTGTTAAGGGTGGTAGATA+TGG | + | chr7.1:76684382-76684401 | MS.gene23854:CDS | 45.0% | |
| GTCACTATGGTCAAGAGATG+TGG | + | chr7.1:76682639-76682658 | MS.gene23854:CDS | 45.0% | |
| GTTACTTGACAACTTGGCAC+AGG | + | chr7.1:76683033-76683052 | MS.gene23854:CDS | 45.0% | |
| TAACAGCTGTGCAATTGGAG+TGG | + | chr7.1:76682617-76682636 | MS.gene23854:CDS | 45.0% | |
| TCTTCTGATTGTTGCAGCTG+AGG | - | chr7.1:76682578-76682597 | None:intergenic | 45.0% | |
| TGCAATTGGAGTGGTCACTA+TGG | + | chr7.1:76682626-76682645 | MS.gene23854:CDS | 45.0% | |
| TTAGCAGATGCTGTTAAGGG+TGG | + | chr7.1:76684373-76684392 | MS.gene23854:CDS | 45.0% | |
| ! | ATGTCAGGTTCAGGTTTAGG+AGG | - | chr7.1:76681889-76681908 | None:intergenic | 45.0% |
| ! | GAAGTGTCCTTACAAGGACT+TGG | + | chr7.1:76681835-76681854 | MS.gene23854:CDS | 45.0% |
| ! | TGATTCTGCTGCAGGTTTTC+AGG | - | chr7.1:76684157-76684176 | None:intergenic | 45.0% |
| ! | TTGGGCACACATCTTTTCCT+TGG | - | chr7.1:76684261-76684280 | None:intergenic | 45.0% |
| ! | TTTGAAGGGTGTGAGAGAGA+AGG | + | chr7.1:76682151-76682170 | MS.gene23854:CDS | 45.0% |
| ! | TTTGAGATCTGTGGTGATCC+AGG | + | chr7.1:76682218-76682237 | MS.gene23854:CDS | 45.0% |
| !! | TGAAGCACTGACATAGACAC+TGG | + | chr7.1:76682773-76682792 | MS.gene23854:intron | 45.0% |
| CTAGCATGGCTTCATCACCA+AGG | + | chr7.1:76684241-76684260 | MS.gene23854:CDS | 50.0% | |
| GAAAAGAATCCTCGCCCAAG+AGG | - | chr7.1:76683001-76683020 | None:intergenic | 50.0% | |
| GCTTTCCAAGAAGAGAGTGG+TGG | - | chr7.1:76684442-76684461 | None:intergenic | 50.0% | |
| TCTGACCATGGCGAATCAGT+AGG | - | chr7.1:76683208-76683227 | None:intergenic | 50.0% | |
| TGACACCGGATTGTATGGCA+TGG | - | chr7.1:76681927-76681946 | None:intergenic | 50.0% | |
| ! | GGGCGAGGATTCTTTTCAAC+AGG | + | chr7.1:76683004-76683023 | MS.gene23854:CDS | 50.0% |
| !! | GGGATGGAAGTGTCCTTACA+AGG | + | chr7.1:76681829-76681848 | MS.gene23854:CDS | 50.0% |
| !! | GTTCACCTACTGATTCGCCA+TGG | + | chr7.1:76683200-76683219 | MS.gene23854:intron | 50.0% |
| AGCCATGCTAGTGCAAGCTG+AGG | - | chr7.1:76684232-76684251 | None:intergenic | 55.0% | |
| CACCTCAGCTTGCACTAGCA+TGG | + | chr7.1:76684227-76684246 | MS.gene23854:CDS | 55.0% | |
| CATGCTAGTGCAAGCTGAGG+TGG | - | chr7.1:76684229-76684248 | None:intergenic | 55.0% | |
| GCATATAGTCCTCTTGGGCG+AGG | + | chr7.1:76682989-76683008 | MS.gene23854:CDS | 55.0% | |
| GGCACAGGATGATTACCGGA+AGG | + | chr7.1:76683048-76683067 | MS.gene23854:CDS | 55.0% | |
| GACACTGGACACAACGCCAC+TGG | + | chr7.1:76682788-76682807 | MS.gene23854:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 76681793 | 76684468 | 76681793 | ID=MS.gene23854 |
| chr7.1 | mRNA | 76681793 | 76684468 | 76681793 | ID=MS.gene23854.t1;Parent=MS.gene23854 |
| chr7.1 | exon | 76681793 | 76682005 | 76681793 | ID=MS.gene23854.t1.exon1;Parent=MS.gene23854.t1 |
| chr7.1 | CDS | 76681793 | 76682005 | 76681793 | ID=cds.MS.gene23854.t1;Parent=MS.gene23854.t1 |
| chr7.1 | exon | 76682149 | 76682346 | 76682149 | ID=MS.gene23854.t1.exon2;Parent=MS.gene23854.t1 |
| chr7.1 | CDS | 76682149 | 76682346 | 76682149 | ID=cds.MS.gene23854.t1;Parent=MS.gene23854.t1 |
| chr7.1 | exon | 76682514 | 76682686 | 76682514 | ID=MS.gene23854.t1.exon3;Parent=MS.gene23854.t1 |
| chr7.1 | CDS | 76682514 | 76682686 | 76682514 | ID=cds.MS.gene23854.t1;Parent=MS.gene23854.t1 |
| chr7.1 | exon | 76682967 | 76683069 | 76682967 | ID=MS.gene23854.t1.exon4;Parent=MS.gene23854.t1 |
| chr7.1 | CDS | 76682967 | 76683069 | 76682967 | ID=cds.MS.gene23854.t1;Parent=MS.gene23854.t1 |
| chr7.1 | exon | 76684136 | 76684468 | 76684136 | ID=MS.gene23854.t1.exon5;Parent=MS.gene23854.t1 |
| chr7.1 | CDS | 76684136 | 76684468 | 76684136 | ID=cds.MS.gene23854.t1;Parent=MS.gene23854.t1 |
| Gene Sequence |
| Protein sequence |
