Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43134.t1 | XP_003621684.1 | 91.1 | 338 | 30 | 0 | 1 | 338 | 1 | 338 | 1.70E-176 | 628.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43134.t1 | Q7XT99 | 74.3 | 342 | 83 | 3 | 2 | 338 | 9 | 350 | 3.7e-148 | 525.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43134.t1 | A2Q5A8 | 91.1 | 338 | 30 | 0 | 1 | 338 | 1 | 338 | 1.2e-176 | 628.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43134.t1 | MTR_7g021680 | 90.855 | 339 | 31 | 0 | 1 | 339 | 1 | 339 | 0.0 | 639 |
| MS.gene43134.t1 | MTR_7g021820 | 90.855 | 339 | 31 | 0 | 1 | 339 | 1 | 339 | 0.0 | 639 |
| MS.gene43134.t1 | MTR_7g021850 | 85.000 | 340 | 49 | 2 | 1 | 339 | 1 | 339 | 0.0 | 600 |
| MS.gene43134.t1 | MTR_7g114990 | 55.723 | 332 | 138 | 6 | 7 | 332 | 16 | 344 | 1.45e-132 | 382 |
| MS.gene43134.t1 | MTR_7g114980 | 56.973 | 337 | 134 | 7 | 6 | 332 | 13 | 348 | 3.42e-132 | 381 |
| MS.gene43134.t1 | MTR_1g102750 | 55.490 | 337 | 142 | 6 | 3 | 332 | 4 | 339 | 7.04e-128 | 370 |
| MS.gene43134.t1 | MTR_7g114970 | 54.118 | 340 | 144 | 6 | 4 | 334 | 7 | 343 | 2.45e-127 | 368 |
| MS.gene43134.t1 | MTR_7g115010 | 52.695 | 334 | 134 | 7 | 7 | 332 | 12 | 329 | 1.54e-119 | 348 |
| MS.gene43134.t1 | MTR_1g102750 | 59.011 | 283 | 112 | 4 | 3 | 282 | 4 | 285 | 1.55e-115 | 337 |
| MS.gene43134.t1 | MTR_7g114980 | 59.786 | 281 | 106 | 5 | 6 | 280 | 13 | 292 | 1.74e-115 | 336 |
| MS.gene43134.t1 | MTR_7g114970 | 58.571 | 280 | 112 | 4 | 4 | 280 | 7 | 285 | 4.82e-115 | 335 |
| MS.gene43134.t1 | MTR_7g114970 | 58.423 | 279 | 112 | 4 | 4 | 279 | 7 | 284 | 7.40e-114 | 332 |
| MS.gene43134.t1 | MTR_7g021825 | 95.890 | 146 | 6 | 0 | 157 | 302 | 15 | 160 | 1.46e-101 | 296 |
| MS.gene43134.t1 | MTR_7g114970 | 57.025 | 242 | 94 | 4 | 97 | 331 | 8 | 246 | 8.41e-95 | 282 |
| MS.gene43134.t1 | MTR_7g114970 | 61.856 | 194 | 72 | 2 | 6 | 197 | 9 | 202 | 6.30e-82 | 248 |
| MS.gene43134.t1 | MTR_7g021670 | 87.692 | 130 | 16 | 0 | 1 | 130 | 1 | 130 | 2.33e-77 | 238 |
| MS.gene43134.t1 | MTR_7g021670 | 90.909 | 110 | 10 | 0 | 230 | 339 | 144 | 253 | 2.56e-66 | 209 |
| MS.gene43134.t1 | MTR_7g114970 | 55.224 | 201 | 80 | 4 | 138 | 331 | 1 | 198 | 2.52e-73 | 226 |
| MS.gene43134.t1 | MTR_7g021685 | 86.957 | 69 | 9 | 0 | 1 | 69 | 1 | 69 | 1.58e-37 | 130 |
| MS.gene43134.t1 | MTR_3g449790 | 31.325 | 332 | 193 | 10 | 6 | 314 | 37 | 356 | 3.87e-30 | 118 |
| MS.gene43134.t1 | MTR_3g449790 | 30.723 | 332 | 189 | 10 | 6 | 314 | 37 | 350 | 1.63e-29 | 116 |
| MS.gene43134.t1 | MTR_1g102740 | 48.571 | 105 | 50 | 1 | 232 | 332 | 3 | 107 | 2.24e-29 | 109 |
| MS.gene43134.t1 | MTR_3g092140 | 28.523 | 298 | 175 | 11 | 35 | 310 | 68 | 349 | 3.99e-25 | 106 |
| MS.gene43134.t1 | MTR_1g047250 | 27.986 | 293 | 182 | 10 | 41 | 312 | 35 | 319 | 9.14e-21 | 91.7 |
| MS.gene43134.t1 | MTR_1g042730 | 27.221 | 349 | 201 | 12 | 8 | 309 | 65 | 407 | 4.72e-18 | 85.1 |
| MS.gene43134.t1 | MTR_4g092750 | 29.167 | 216 | 138 | 6 | 8 | 213 | 5 | 215 | 1.69e-16 | 79.0 |
| MS.gene43134.t1 | MTR_4g092750 | 29.167 | 216 | 138 | 6 | 8 | 213 | 5 | 215 | 2.11e-16 | 79.3 |
| MS.gene43134.t1 | MTR_4g092750 | 29.167 | 216 | 138 | 6 | 8 | 213 | 5 | 215 | 2.90e-16 | 78.6 |
| MS.gene43134.t1 | MTR_8g088160 | 26.337 | 243 | 133 | 9 | 42 | 238 | 73 | 315 | 5.09e-12 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43134.t1 | AT1G60730 | 76.106 | 339 | 78 | 2 | 4 | 339 | 7 | 345 | 0.0 | 532 |
| MS.gene43134.t1 | AT1G60710 | 75.516 | 339 | 80 | 2 | 4 | 339 | 7 | 345 | 0.0 | 529 |
| MS.gene43134.t1 | AT1G60680 | 75.000 | 340 | 81 | 3 | 3 | 338 | 6 | 345 | 0.0 | 522 |
| MS.gene43134.t1 | AT1G60690 | 73.156 | 339 | 88 | 2 | 3 | 338 | 6 | 344 | 0.0 | 521 |
| MS.gene43134.t1 | AT1G60730 | 71.866 | 359 | 78 | 3 | 4 | 339 | 7 | 365 | 0.0 | 520 |
| MS.gene43134.t1 | AT1G10810 | 69.527 | 338 | 100 | 2 | 4 | 338 | 7 | 344 | 7.91e-176 | 491 |
| MS.gene43134.t1 | AT1G60750 | 70.588 | 340 | 79 | 4 | 3 | 338 | 7 | 329 | 3.29e-172 | 482 |
| MS.gene43134.t1 | AT1G10810 | 69.373 | 271 | 80 | 2 | 71 | 338 | 22 | 292 | 1.68e-137 | 392 |
| MS.gene43134.t1 | AT1G60680 | 77.729 | 229 | 49 | 2 | 3 | 229 | 6 | 234 | 1.35e-126 | 363 |
| MS.gene43134.t1 | AT1G10810 | 71.983 | 232 | 64 | 1 | 4 | 234 | 7 | 238 | 4.83e-121 | 349 |
| MS.gene43134.t1 | AT1G60730 | 73.381 | 139 | 36 | 1 | 4 | 141 | 7 | 145 | 5.96e-67 | 209 |
| MS.gene43134.t1 | AT5G53580 | 30.662 | 287 | 161 | 10 | 46 | 310 | 80 | 350 | 8.71e-27 | 109 |
| MS.gene43134.t1 | AT1G06690 | 28.012 | 332 | 204 | 11 | 6 | 314 | 48 | 367 | 4.09e-24 | 102 |
| MS.gene43134.t1 | AT1G04690 | 27.545 | 334 | 186 | 13 | 9 | 309 | 6 | 316 | 1.05e-22 | 97.4 |
| MS.gene43134.t1 | AT4G33670 | 25.228 | 329 | 212 | 9 | 1 | 315 | 1 | 309 | 1.50e-21 | 94.0 |
| MS.gene43134.t1 | AT1G04420 | 25.905 | 359 | 213 | 15 | 8 | 319 | 60 | 412 | 4.95e-17 | 82.0 |
Find 73 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTAATTTGGCTACAAAATT+TGG | 0.121716 | 7.2:+77520200 | MS.gene43134:CDS |
| TTGATTCAAGTTCTCAATTT+TGG | 0.160230 | 7.2:-77521969 | None:intergenic |
| TCCAACTGCACAGCTGTTAT+TGG | 0.217840 | 7.2:-77520664 | None:intergenic |
| CACACCAATGAAGTTCTTCT+TGG | 0.223012 | 7.2:+77520006 | MS.gene43134:CDS |
| TCATAATGATTTATTTCTTA+TGG | 0.227099 | 7.2:-77522144 | None:intergenic |
| AGTGAGAGAGAAAGTTAATT+TGG | 0.231011 | 7.2:+77520187 | MS.gene43134:CDS |
| CTTGACACTTCTGACTTCTA+TGG | 0.250488 | 7.2:+77519979 | MS.gene43134:CDS |
| TCAAGTTCTCCCATTTCTTC+TGG | 0.258309 | 7.2:-77522022 | None:intergenic |
| ATACTCCACCACTCTCTTCT+TGG | 0.280266 | 7.2:+77522110 | MS.gene43134:CDS |
| TTTCTTAGGGAACTTGGAAT+TGG | 0.323334 | 7.2:+77520997 | MS.gene43134:intron |
| ATGAGCATGTCTGCTTTCTA+TGG | 0.353634 | 7.2:+77519889 | MS.gene43134:CDS |
| GAAACTAACACCAGAAGAAA+TGG | 0.357383 | 7.2:+77522012 | MS.gene43134:CDS |
| TGTGCTCTTCTGATTGTTGC+AGG | 0.371067 | 7.2:-77520631 | None:intergenic |
| CTTTCCAAGAAGAACTTCAT+TGG | 0.376886 | 7.2:-77520010 | None:intergenic |
| AAGACGTAATTCCAACTTGC+AGG | 0.402309 | 7.2:+77520716 | MS.gene43134:CDS |
| ATCATGTCAGGTTCAAGTTT+AGG | 0.403019 | 7.2:-77519916 | None:intergenic |
| TGCAGTACATCCCTTCTTTG+TGG | 0.420403 | 7.2:-77521882 | None:intergenic |
| AATTGTGGAATAGGCTTTGA+AGG | 0.428009 | 7.2:+77520163 | MS.gene43134:intron |
| TTTGTAAGATTGGGGAGCTC+AGG | 0.433711 | 7.2:+77520557 | MS.gene43134:intron |
| GATTGTTGCAGGCGAGGCCT+CGG | 0.439243 | 7.2:-77520620 | None:intergenic |
| AAAGTAGGAAGAATGAAGTT+AGG | 0.442022 | 7.2:+77519826 | MS.gene43134:CDS |
| AAAAGTGACACCAGATTGTA+TGG | 0.442868 | 7.2:-77519956 | None:intergenic |
| ATATAGTCTGATTCTGCTGC+AGG | 0.450000 | 7.2:-77521838 | None:intergenic |
| TATGAGATCTGTGGTGATCC+AGG | 0.452334 | 7.2:+77520245 | MS.gene43134:CDS |
| GTTGCTTGACAACTTGCAAC+AGG | 0.458094 | 7.2:+77521071 | MS.gene43134:CDS |
| ATAGTTGCATATAGTCCTCT+TGG | 0.466082 | 7.2:+77521021 | MS.gene43134:CDS |
| CAATGAACTGGCCACAAAGA+AGG | 0.472154 | 7.2:+77521871 | MS.gene43134:CDS |
| AATCAAACTGTGATTTCAAT+CGG | 0.476703 | 7.2:-77520359 | None:intergenic |
| CATCTCAGCTTGCATTGGCA+TGG | 0.479749 | 7.2:+77521903 | MS.gene43134:CDS |
| TCGGGCACACGTCGTTTCCT+TGG | 0.481328 | 7.2:-77521934 | None:intergenic |
| ATTCACCATGCCATACAATC+TGG | 0.483546 | 7.2:+77519946 | MS.gene43134:CDS |
| ATTTGACAAAGTCAATGAAC+TGG | 0.487530 | 7.2:+77521859 | MS.gene43134:CDS |
| TCCAATAACAGCTGTGCAGT+TGG | 0.490955 | 7.2:+77520663 | MS.gene43134:CDS |
| CAAGCTTCTCTCACATAGCC+TGG | 0.497055 | 7.2:-77520263 | None:intergenic |
| CAATGAAGTTCTTCTTGGAA+AGG | 0.501797 | 7.2:+77520011 | MS.gene43134:CDS |
| TAAATATCACACCTGCAAGT+TGG | 0.505103 | 7.2:-77520727 | None:intergenic |
| AAACTAACACCAGAAGAAAT+GGG | 0.505399 | 7.2:+77522013 | MS.gene43134:CDS |
| CTCAGGAAACTTGTTGAAGA+GGG | 0.507897 | 7.2:+77520574 | MS.gene43134:CDS |
| AACGACGTGTGCCCGATACC+TGG | 0.512377 | 7.2:+77521941 | MS.gene43134:CDS |
| TACTGCATCTCAGCTTGCAT+TGG | 0.515172 | 7.2:+77521898 | MS.gene43134:CDS |
| AATGAACTGGCCACAAAGAA+GGG | 0.518216 | 7.2:+77521872 | MS.gene43134:CDS |
| CTAAGAGCAATGGCAAAAGT+AGG | 0.527544 | 7.2:+77519811 | None:intergenic |
| TCTTCTGATTGTTGCAGGCG+AGG | 0.536060 | 7.2:-77520626 | None:intergenic |
| TAGTTGCATATAGTCCTCTT+GGG | 0.540181 | 7.2:+77521022 | MS.gene43134:CDS |
| GCATATAGTCCTCTTGGGCG+AGG | 0.551187 | 7.2:+77521027 | MS.gene43134:CDS |
| TGAATGAGAGCAATCATGTC+AGG | 0.558885 | 7.2:-77519928 | None:intergenic |
| GAGGGGAAAATAAAATACAT+AGG | 0.559341 | 7.2:+77520592 | MS.gene43134:CDS |
| GAAGTTAGGATCACAAGGCA+TGG | 0.564034 | 7.2:+77519840 | MS.gene43134:CDS |
| ATGTCAGGTTCAAGTTTAGG+AGG | 0.568274 | 7.2:-77519913 | None:intergenic |
| GAGAACTTGAATCAAAACAT+TGG | 0.571832 | 7.2:+77521977 | MS.gene43134:CDS |
| GAAGAACTTCATTGGTGTGA+GGG | 0.571972 | 7.2:-77520002 | None:intergenic |
| GCTCAGGAAACTTGTTGAAG+AGG | 0.576635 | 7.2:+77520573 | MS.gene43134:CDS |
| GGCATGGAAGTGTCCTTGCA+AGG | 0.583936 | 7.2:+77519856 | MS.gene43134:CDS |
| TAAGAGTGGTAGATATGTAG+AGG | 0.597868 | 7.2:+77522063 | MS.gene43134:CDS |
| TTAGCAAATGCTGTTAAGAG+TGG | 0.598227 | 7.2:+77522049 | MS.gene43134:CDS |
| ACTTGCAACAGGATGACTAC+AGG | 0.598957 | 7.2:+77521082 | MS.gene43134:CDS |
| TAACAGCTGTGCAGTTGGAG+TGG | 0.606322 | 7.2:+77520668 | MS.gene43134:CDS |
| ATTGTGGAATAGGCTTTGAA+GGG | 0.607262 | 7.2:+77520164 | MS.gene43134:intron |
| TGCAGTTGGAGTGGTCATTG+TGG | 0.610140 | 7.2:+77520677 | MS.gene43134:CDS |
| ATGTAGAGGATACAAGTACA+TGG | 0.611228 | 7.2:+77522077 | MS.gene43134:CDS |
| CATGCAACTAAGTCCTTGCA+AGG | 0.616712 | 7.2:-77519869 | None:intergenic |
| GAAAAGAATCCTCGCCCAAG+AGG | 0.632204 | 7.2:-77521036 | None:intergenic |
| AGAAGAACTTCATTGGTGTG+AGG | 0.636443 | 7.2:-77520003 | None:intergenic |
| AGAATGAAGTTAGGATCACA+AGG | 0.646380 | 7.2:+77519835 | MS.gene43134:CDS |
| GCTTTCCAAGAAGAGAGTGG+TGG | 0.651055 | 7.2:-77522115 | None:intergenic |
| ATTGTGGTCAAGAGATGTCG+AGG | 0.654297 | 7.2:+77520693 | MS.gene43134:CDS |
| GCAACAGGATGACTACAGGA+AGG | 0.666822 | 7.2:+77521086 | MS.gene43134:CDS |
| AAAATACATAGGTTTGTCCG+AGG | 0.673641 | 7.2:+77520603 | MS.gene43134:CDS |
| TTGGCATGGCTTCATCACCA+AGG | 0.680145 | 7.2:+77521917 | MS.gene43134:CDS |
| TCAGGAAACTTGTTGAAGAG+GGG | 0.681801 | 7.2:+77520575 | MS.gene43134:CDS |
| GCAGCTTTCCAAGAAGAGAG+TGG | 0.687488 | 7.2:-77522118 | None:intergenic |
| GAAGAGAAATATGAGATCTG+TGG | 0.699778 | 7.2:+77520236 | MS.gene43134:CDS |
| TGACACCAGATTGTATGGCA+TGG | 0.709987 | 7.2:-77519951 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTAAACTAATCTAAC+AGG | + | chr7.2:77520470-77520489 | MS.gene43134:intron | 15.0% |
| !! | AAAATTAAACTAATCTAACA+GGG | + | chr7.2:77520471-77520490 | MS.gene43134:intron | 15.0% |
| !! | TAAAAATTAAAAACATTGGA+TGG | + | chr7.2:77521568-77521587 | MS.gene43134:intron | 15.0% |
| !!! | AGTTATAATTTTCTTTCTTA+GGG | + | chr7.2:77520984-77521003 | MS.gene43134:intron | 15.0% |
| !!! | TTCTTTTGATTTAAATTTCT+GGG | + | chr7.2:77520062-77520081 | MS.gene43134:intron | 15.0% |
| !!! | TTTCTTTTGATTTAAATTTC+TGG | + | chr7.2:77520061-77520080 | MS.gene43134:intron | 15.0% |
| !! | AAATCAAAAGAAAAGCTAAA+AGG | - | chr7.2:77520054-77520073 | None:intergenic | 20.0% |
| !! | AATCAAAAGAAAAGCTAAAA+GGG | - | chr7.2:77520053-77520072 | None:intergenic | 20.0% |
| !! | TATTTGTGTGTTGTAAATTA+GGG | + | chr7.2:77521741-77521760 | MS.gene43134:intron | 20.0% |
| !! | TTTCTTCCATAAAACAATTT+GGG | + | chr7.2:77521265-77521284 | MS.gene43134:intron | 20.0% |
| !!! | ACAAGTCTTAGTTTTTTAAA+AGG | + | chr7.2:77521418-77521437 | MS.gene43134:intron | 20.0% |
| !!! | ATTTTACTAACATGCTTAAA+AGG | - | chr7.2:77521783-77521802 | None:intergenic | 20.0% |
| !!! | GAGTTATAATTTTCTTTCTT+AGG | + | chr7.2:77520983-77521002 | MS.gene43134:intron | 20.0% |
| !!! | TATTTTACACAAGTTCTTTA+TGG | + | chr7.2:77521663-77521682 | MS.gene43134:intron | 20.0% |
| !!! | TTTTCATCATTTCATTCATT+AGG | + | chr7.2:77521617-77521636 | MS.gene43134:intron | 20.0% |
| !!! | TTTTCTTCCATAAAACAATT+TGG | + | chr7.2:77521264-77521283 | MS.gene43134:intron | 20.0% |
| ! | AAAAAACTAAGACTTGTCAT+AGG | - | chr7.2:77521415-77521434 | None:intergenic | 25.0% |
| ! | AAAAACTAAGACTTGTCATA+GGG | - | chr7.2:77521414-77521433 | None:intergenic | 25.0% |
| ! | AATCAAACTGTGATTTCAAT+CGG | - | chr7.2:77520362-77520381 | None:intergenic | 25.0% |
| ! | ATAACACCAACAATTCAAAT+TGG | - | chr7.2:77520940-77520959 | None:intergenic | 25.0% |
| ! | ATGTTAGTAAAATATGTTGC+AGG | + | chr7.2:77521790-77521809 | MS.gene43134:intron | 25.0% |
| ! | GTATTTGTGTGTTGTAAATT+AGG | + | chr7.2:77521740-77521759 | MS.gene43134:intron | 25.0% |
| ! | TATATACATGCATGAAACAA+AGG | - | chr7.2:77521645-77521664 | None:intergenic | 25.0% |
| ! | TCATTGATGTATGACATTAA+AGG | - | chr7.2:77521215-77521234 | None:intergenic | 25.0% |
| ! | TTGTATCAGATAGAGAAAAA+TGG | - | chr7.2:77520781-77520800 | None:intergenic | 25.0% |
| !! | GTTAATTTGGCTACAAAATT+TGG | + | chr7.2:77520200-77520219 | MS.gene43134:CDS | 25.0% |
| !!! | TATGATTGTGAATTTTGATG+AGG | + | chr7.2:77520134-77520153 | MS.gene43134:intron | 25.0% |
| !!! | TGTGATTACTTCAACTTTTT+TGG | + | chr7.2:77520529-77520548 | MS.gene43134:intron | 25.0% |
| !!! | TTGATTCAAGTTCTCAATTT+TGG | - | chr7.2:77521972-77521991 | None:intergenic | 25.0% |
| !!! | TTGGTTTTCTTTGTAAGATT+GGG | + | chr7.2:77520548-77520567 | MS.gene43134:intron | 25.0% |
| !!! | TTTGGTTTTCTTTGTAAGAT+TGG | + | chr7.2:77520547-77520566 | MS.gene43134:intron | 25.0% |
| AAAACTAAGACTTGTCATAG+GGG | - | chr7.2:77521413-77521432 | None:intergenic | 30.0% | |
| AAACTAACACCAGAAGAAAT+GGG | + | chr7.2:77522013-77522032 | MS.gene43134:CDS | 30.0% | |
| AAAGTAGGAAGAATGAAGTT+AGG | + | chr7.2:77519826-77519845 | MS.gene43134:CDS | 30.0% | |
| ACCAAATCAGAGAAATGAAA+AGG | - | chr7.2:77520389-77520408 | None:intergenic | 30.0% | |
| AGTGAGAGAGAAAGTTAATT+TGG | + | chr7.2:77520187-77520206 | MS.gene43134:CDS | 30.0% | |
| ATGCTTCCAATTTGAATTGT+TGG | + | chr7.2:77520931-77520950 | MS.gene43134:intron | 30.0% | |
| ATTTGACAAAGTCAATGAAC+TGG | + | chr7.2:77521859-77521878 | MS.gene43134:CDS | 30.0% | |
| CATGCTTAAAAGGAAGAATA+TGG | - | chr7.2:77521773-77521792 | None:intergenic | 30.0% | |
| CCAAATCAGAGAAATGAAAA+GGG | - | chr7.2:77520388-77520407 | None:intergenic | 30.0% | |
| CCATAAAACAATTTGGGAAT+AGG | + | chr7.2:77521271-77521290 | MS.gene43134:intron | 30.0% | |
| GAGAACTTGAATCAAAACAT+TGG | + | chr7.2:77521977-77521996 | MS.gene43134:CDS | 30.0% | |
| GAGGGGAAAATAAAATACAT+AGG | + | chr7.2:77520592-77520611 | MS.gene43134:CDS | 30.0% | |
| ! | ATTCAAATTGGAAGCATGTT+TGG | - | chr7.2:77520928-77520947 | None:intergenic | 30.0% |
| ! | ATTTTCTTTCTTAGGGAACT+TGG | + | chr7.2:77520991-77521010 | MS.gene43134:intron | 30.0% |
| ! | TGGTTTTCTTTGTAAGATTG+GGG | + | chr7.2:77520549-77520568 | MS.gene43134:intron | 30.0% |
| !! | ATTCAAGTTCTCAATTTTGG+TGG | - | chr7.2:77521969-77521988 | None:intergenic | 30.0% |
| !! | CACAACCATGGATTATTTTA+GGG | + | chr7.2:77521188-77521207 | MS.gene43134:intron | 30.0% |
| !! | CCTATTCCCAAATTGTTTTA+TGG | - | chr7.2:77521274-77521293 | None:intergenic | 30.0% |
| !! | TCACAACCATGGATTATTTT+AGG | + | chr7.2:77521187-77521206 | MS.gene43134:intron | 30.0% |
| !! | TTGTGAATTTTGATGAGGTT+TGG | + | chr7.2:77520139-77520158 | MS.gene43134:intron | 30.0% |
| !!! | TCATTTCTCTGATTTGGTTT+TGG | + | chr7.2:77520391-77520410 | MS.gene43134:intron | 30.0% |
| AAAAGTGACACCAGATTGTA+TGG | - | chr7.2:77519959-77519978 | None:intergenic | 35.0% | |
| AAAATACATAGGTTTGTCCG+AGG | + | chr7.2:77520603-77520622 | MS.gene43134:CDS | 35.0% | |
| AAGGACCCTAAAATAATCCA+TGG | - | chr7.2:77521196-77521215 | None:intergenic | 35.0% | |
| AGAATGAAGTTAGGATCACA+AGG | + | chr7.2:77519835-77519854 | MS.gene43134:CDS | 35.0% | |
| AGGTTTGGAAATTGTGGAAT+AGG | + | chr7.2:77520154-77520173 | MS.gene43134:intron | 35.0% | |
| ATAGTTGCATATAGTCCTCT+TGG | + | chr7.2:77521021-77521040 | MS.gene43134:CDS | 35.0% | |
| ATCAACACACATTGATCACA+TGG | - | chr7.2:77521367-77521386 | None:intergenic | 35.0% | |
| ATGGGACTAAGAGGTTAATT+AGG | - | chr7.2:77521466-77521485 | None:intergenic | 35.0% | |
| ATGTAGAGGATACAAGTACA+TGG | + | chr7.2:77522077-77522096 | MS.gene43134:CDS | 35.0% | |
| CAATGAAGTTCTTCTTGGAA+AGG | + | chr7.2:77520011-77520030 | MS.gene43134:CDS | 35.0% | |
| CTTTCCAAGAAGAACTTCAT+TGG | - | chr7.2:77520013-77520032 | None:intergenic | 35.0% | |
| GAAACAAGGAAAATGTGATG+TGG | + | chr7.2:77521594-77521613 | MS.gene43134:intron | 35.0% | |
| GAAACTAACACCAGAAGAAA+TGG | + | chr7.2:77522012-77522031 | MS.gene43134:CDS | 35.0% | |
| GAAGAGAAATATGAGATCTG+TGG | + | chr7.2:77520236-77520255 | MS.gene43134:CDS | 35.0% | |
| TAAATATCACACCTGCAAGT+TGG | - | chr7.2:77520730-77520749 | None:intergenic | 35.0% | |
| TAAGAGTGGTAGATATGTAG+AGG | + | chr7.2:77522063-77522082 | MS.gene43134:CDS | 35.0% | |
| TAGTTGCATATAGTCCTCTT+GGG | + | chr7.2:77521022-77521041 | MS.gene43134:CDS | 35.0% | |
| TGGGACTAAGAGGTTAATTA+GGG | - | chr7.2:77521465-77521484 | None:intergenic | 35.0% | |
| TTAGCAAATGCTGTTAAGAG+TGG | + | chr7.2:77522049-77522068 | MS.gene43134:CDS | 35.0% | |
| TTGATGAGGTTTGGAAATTG+TGG | + | chr7.2:77520148-77520167 | MS.gene43134:intron | 35.0% | |
| TTTCTTAGGGAACTTGGAAT+TGG | + | chr7.2:77520997-77521016 | MS.gene43134:intron | 35.0% | |
| ! | AATGAGTACCATGAAGCATT+AGG | + | chr7.2:77520421-77520440 | MS.gene43134:intron | 35.0% |
| ! | AATTGTGGAATAGGCTTTGA+AGG | + | chr7.2:77520163-77520182 | MS.gene43134:intron | 35.0% |
| ! | ACATTGGATGGTTTGAAACA+AGG | + | chr7.2:77521580-77521599 | MS.gene43134:intron | 35.0% |
| ! | ATCATGTCAGGTTCAAGTTT+AGG | - | chr7.2:77519919-77519938 | None:intergenic | 35.0% |
| ! | CCCTTTTCATTTCTCTGATT+TGG | + | chr7.2:77520385-77520404 | MS.gene43134:intron | 35.0% |
| !! | ATTGTGGAATAGGCTTTGAA+GGG | + | chr7.2:77520164-77520183 | MS.gene43134:intron | 35.0% |
| !! | TAGTTTTGCCTAATGCTTCA+TGG | - | chr7.2:77520432-77520451 | None:intergenic | 35.0% |
| AAGACGTAATTCCAACTTGC+AGG | + | chr7.2:77520716-77520735 | MS.gene43134:CDS | 40.0% | |
| AAGAGGTTAATTAGGGGAAG+TGG | - | chr7.2:77521458-77521477 | None:intergenic | 40.0% | |
| AATGAACTGGCCACAAAGAA+GGG | + | chr7.2:77521872-77521891 | MS.gene43134:CDS | 40.0% | |
| AGAAGAACTTCATTGGTGTG+AGG | - | chr7.2:77520006-77520025 | None:intergenic | 40.0% | |
| ATATAGTCTGATTCTGCTGC+AGG | - | chr7.2:77521841-77521860 | None:intergenic | 40.0% | |
| ATGAGCATGTCTGCTTTCTA+TGG | + | chr7.2:77519889-77519908 | MS.gene43134:CDS | 40.0% | |
| ATTCACCATGCCATACAATC+TGG | + | chr7.2:77519946-77519965 | MS.gene43134:CDS | 40.0% | |
| CACACCAATGAAGTTCTTCT+TGG | + | chr7.2:77520006-77520025 | MS.gene43134:CDS | 40.0% | |
| CTTGACACTTCTGACTTCTA+TGG | + | chr7.2:77519979-77519998 | MS.gene43134:CDS | 40.0% | |
| GAAGAACTTCATTGGTGTGA+GGG | - | chr7.2:77520005-77520024 | None:intergenic | 40.0% | |
| GATATCAACATGGGACTAAG+AGG | - | chr7.2:77521475-77521494 | None:intergenic | 40.0% | |
| GGGAATAGGTGTAACAGTAA+TGG | + | chr7.2:77521285-77521304 | MS.gene43134:intron | 40.0% | |
| GGGACTAAGAGGTTAATTAG+GGG | - | chr7.2:77521464-77521483 | None:intergenic | 40.0% | |
| GGGGTTATCATGTAGATTGT+AGG | - | chr7.2:77521394-77521413 | None:intergenic | 40.0% | |
| GTTGGTCATCGAATATCTTC+TGG | - | chr7.2:77521505-77521524 | None:intergenic | 40.0% | |
| TCAAGTTCTCCCATTTCTTC+TGG | - | chr7.2:77522025-77522044 | None:intergenic | 40.0% | |
| TGAATGAGAGCAATCATGTC+AGG | - | chr7.2:77519931-77519950 | None:intergenic | 40.0% | |
| TGCTGCTAGTGAACACAATT+CGG | + | chr7.2:77521322-77521341 | MS.gene43134:intron | 40.0% | |
| ! | ATGTCAGGTTCAAGTTTAGG+AGG | - | chr7.2:77519916-77519935 | None:intergenic | 40.0% |
| !! | ATTTTGGTGGTTCCAGGTAT+CGG | - | chr7.2:77521956-77521975 | None:intergenic | 40.0% |
| !! | CTCAGGAAACTTGTTGAAGA+GGG | + | chr7.2:77520574-77520593 | MS.gene43134:CDS | 40.0% |
| !! | TCAGGAAACTTGTTGAAGAG+GGG | + | chr7.2:77520575-77520594 | MS.gene43134:CDS | 40.0% |
| !! | TGTTCGTGACGTTTTAGTGT+CGG | + | chr7.2:77520899-77520918 | MS.gene43134:intron | 40.0% |
| !! | TTCTCAATTTTGGTGGTTCC+AGG | - | chr7.2:77521962-77521981 | None:intergenic | 40.0% |
| !!! | AGGTTTTCAGGTTGAAATCG+AGG | - | chr7.2:77521821-77521840 | None:intergenic | 40.0% |
| ACTTGCAACAGGATGACTAC+AGG | + | chr7.2:77521082-77521101 | MS.gene43134:CDS | 45.0% | |
| ATACTCCACCACTCTCTTCT+TGG | + | chr7.2:77522110-77522129 | MS.gene43134:CDS | 45.0% | |
| ATTGTGGTCAAGAGATGTCG+AGG | + | chr7.2:77520693-77520712 | MS.gene43134:CDS | 45.0% | |
| CAATGAACTGGCCACAAAGA+AGG | + | chr7.2:77521871-77521890 | MS.gene43134:CDS | 45.0% | |
| CATGCAACTAAGTCCTTGCA+AGG | - | chr7.2:77519872-77519891 | None:intergenic | 45.0% | |
| CATGGTTGTGAATCACTGCT+AGG | - | chr7.2:77521178-77521197 | None:intergenic | 45.0% | |
| CTAGCAGTGATTCACAACCA+TGG | + | chr7.2:77521176-77521195 | MS.gene43134:intron | 45.0% | |
| GAAGTTAGGATCACAAGGCA+TGG | + | chr7.2:77519840-77519859 | MS.gene43134:CDS | 45.0% | |
| GATGACTACAGGAAGGTTTG+TGG | + | chr7.2:77521093-77521112 | MS.gene43134:intron | 45.0% | |
| GGCGGTTCAGATATCAACAT+GGG | - | chr7.2:77521484-77521503 | None:intergenic | 45.0% | |
| GGTCATCGAATATCTTCTGG+CGG | - | chr7.2:77521502-77521521 | None:intergenic | 45.0% | |
| GGTTAATTAGGGGAAGTGGA+AGG | - | chr7.2:77521454-77521473 | None:intergenic | 45.0% | |
| GTTGCTTGACAACTTGCAAC+AGG | + | chr7.2:77521071-77521090 | MS.gene43134:CDS | 45.0% | |
| TACTGCATCTCAGCTTGCAT+TGG | + | chr7.2:77521898-77521917 | MS.gene43134:CDS | 45.0% | |
| TATGAGATCTGTGGTGATCC+AGG | + | chr7.2:77520245-77520264 | MS.gene43134:CDS | 45.0% | |
| TCCAACTGCACAGCTGTTAT+TGG | - | chr7.2:77520667-77520686 | None:intergenic | 45.0% | |
| TCCAATAACAGCTGTGCAGT+TGG | + | chr7.2:77520663-77520682 | MS.gene43134:CDS | 45.0% | |
| TGACACCAGATTGTATGGCA+TGG | - | chr7.2:77519954-77519973 | None:intergenic | 45.0% | |
| TGCAGTACATCCCTTCTTTG+TGG | - | chr7.2:77521885-77521904 | None:intergenic | 45.0% | |
| TGGCGGTTCAGATATCAACA+TGG | - | chr7.2:77521485-77521504 | None:intergenic | 45.0% | |
| TGTGCTCTTCTGATTGTTGC+AGG | - | chr7.2:77520634-77520653 | None:intergenic | 45.0% | |
| TTTGTAAGATTGGGGAGCTC+AGG | + | chr7.2:77520557-77520576 | MS.gene43134:intron | 45.0% | |
| ! | TGATTCTGCTGCAGGTTTTC+AGG | - | chr7.2:77521833-77521852 | None:intergenic | 45.0% |
| ! | TGGGCGAGGATTCTTTTCAT+CGG | + | chr7.2:77521041-77521060 | MS.gene43134:CDS | 45.0% |
| !! | GCTCAGGAAACTTGTTGAAG+AGG | + | chr7.2:77520573-77520592 | MS.gene43134:CDS | 45.0% |
| !! | TTTTGGTGGTTCCAGGTATC+GGG | - | chr7.2:77521955-77521974 | None:intergenic | 45.0% |
| !! | TTAAAAAATAAATAAATAAC+TGG | + | chr7.2:77521532-77521551 | MS.gene43134:intron | 5.0% |
| !! | TTAATAAAAATTAAAAACAT+TGG | + | chr7.2:77521564-77521583 | MS.gene43134:intron | 5.0% |
| !!! | TTATTTTTTAAAATTTTTGT+TGG | - | chr7.2:77521523-77521542 | None:intergenic | 5.0% |
| CAAGCTTCTCTCACATAGCC+TGG | - | chr7.2:77520266-77520285 | None:intergenic | 50.0% | |
| GAAAAGAATCCTCGCCCAAG+AGG | - | chr7.2:77521039-77521058 | None:intergenic | 50.0% | |
| GCAACAGGATGACTACAGGA+AGG | + | chr7.2:77521086-77521105 | MS.gene43134:CDS | 50.0% | |
| GCAGCTTTCCAAGAAGAGAG+TGG | - | chr7.2:77522121-77522140 | None:intergenic | 50.0% | |
| GCTTTCCAAGAAGAGAGTGG+TGG | - | chr7.2:77522118-77522137 | None:intergenic | 50.0% | |
| TAACAGCTGTGCAGTTGGAG+TGG | + | chr7.2:77520668-77520687 | MS.gene43134:CDS | 50.0% | |
| TCTTCTGATTGTTGCAGGCG+AGG | - | chr7.2:77520629-77520648 | None:intergenic | 50.0% | |
| TGCAGTTGGAGTGGTCATTG+TGG | + | chr7.2:77520677-77520696 | MS.gene43134:CDS | 50.0% | |
| TTGGCATGGCTTCATCACCA+AGG | + | chr7.2:77521917-77521936 | MS.gene43134:CDS | 50.0% | |
| ! | CATCTCAGCTTGCATTGGCA+TGG | + | chr7.2:77521903-77521922 | MS.gene43134:CDS | 50.0% |
| ! | GGGCGAGGATTCTTTTCATC+GGG | + | chr7.2:77521042-77521061 | MS.gene43134:CDS | 50.0% |
| GCATATAGTCCTCTTGGGCG+AGG | + | chr7.2:77521027-77521046 | MS.gene43134:CDS | 55.0% | |
| !! | GGCATGGAAGTGTCCTTGCA+AGG | + | chr7.2:77519856-77519875 | MS.gene43134:CDS | 55.0% |
| AACGACGTGTGCCCGATACC+TGG | + | chr7.2:77521941-77521960 | MS.gene43134:CDS | 60.0% | |
| GATTGTTGCAGGCGAGGCCT+CGG | - | chr7.2:77520623-77520642 | None:intergenic | 60.0% | |
| TCGGGCACACGTCGTTTCCT+TGG | - | chr7.2:77521937-77521956 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 77519820 | 77522156 | 77519820 | ID=MS.gene43134 |
| chr7.2 | mRNA | 77519820 | 77522156 | 77519820 | ID=MS.gene43134.t1;Parent=MS.gene43134 |
| chr7.2 | exon | 77519820 | 77520032 | 77519820 | ID=MS.gene43134.t1.exon1;Parent=MS.gene43134.t1 |
| chr7.2 | CDS | 77519820 | 77520032 | 77519820 | ID=cds.MS.gene43134.t1;Parent=MS.gene43134.t1 |
| chr7.2 | exon | 77520176 | 77520373 | 77520176 | ID=MS.gene43134.t1.exon2;Parent=MS.gene43134.t1 |
| chr7.2 | CDS | 77520176 | 77520373 | 77520176 | ID=cds.MS.gene43134.t1;Parent=MS.gene43134.t1 |
| chr7.2 | exon | 77520565 | 77520737 | 77520565 | ID=MS.gene43134.t1.exon3;Parent=MS.gene43134.t1 |
| chr7.2 | CDS | 77520565 | 77520737 | 77520565 | ID=cds.MS.gene43134.t1;Parent=MS.gene43134.t1 |
| chr7.2 | exon | 77521005 | 77521107 | 77521005 | ID=MS.gene43134.t1.exon4;Parent=MS.gene43134.t1 |
| chr7.2 | CDS | 77521005 | 77521107 | 77521005 | ID=cds.MS.gene43134.t1;Parent=MS.gene43134.t1 |
| chr7.2 | exon | 77521812 | 77522156 | 77521812 | ID=MS.gene43134.t1.exon5;Parent=MS.gene43134.t1 |
| chr7.2 | CDS | 77521812 | 77522156 | 77521812 | ID=cds.MS.gene43134.t1;Parent=MS.gene43134.t1 |
| Gene Sequence |
| Protein sequence |
