Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93601.t1 | XP_003621684.1 | 91.1 | 338 | 30 | 0 | 1 | 338 | 1 | 338 | 2.60E-177 | 631.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93601.t1 | Q7XT99 | 74.7 | 340 | 81 | 3 | 4 | 338 | 11 | 350 | 4.3e-149 | 528.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93601.t1 | A2Q5A8 | 91.1 | 338 | 30 | 0 | 1 | 338 | 1 | 338 | 1.8e-177 | 631.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93601.t1 | MTR_7g021680 | 90.855 | 339 | 31 | 0 | 1 | 339 | 1 | 339 | 0.0 | 640 |
| MS.gene93601.t1 | MTR_7g021820 | 90.855 | 339 | 31 | 0 | 1 | 339 | 1 | 339 | 0.0 | 640 |
| MS.gene93601.t1 | MTR_7g021850 | 85.000 | 340 | 49 | 2 | 1 | 339 | 1 | 339 | 0.0 | 602 |
| MS.gene93601.t1 | MTR_7g114990 | 56.024 | 332 | 137 | 6 | 7 | 332 | 16 | 344 | 4.21e-134 | 386 |
| MS.gene93601.t1 | MTR_7g114980 | 57.270 | 337 | 133 | 7 | 6 | 332 | 13 | 348 | 1.11e-133 | 385 |
| MS.gene93601.t1 | MTR_7g114970 | 54.412 | 340 | 143 | 6 | 4 | 334 | 7 | 343 | 5.87e-129 | 372 |
| MS.gene93601.t1 | MTR_1g102750 | 55.490 | 337 | 142 | 6 | 3 | 332 | 4 | 339 | 3.54e-128 | 370 |
| MS.gene93601.t1 | MTR_7g115010 | 52.994 | 334 | 133 | 7 | 7 | 332 | 12 | 329 | 4.12e-121 | 352 |
| MS.gene93601.t1 | MTR_7g114980 | 60.142 | 281 | 105 | 5 | 6 | 280 | 13 | 292 | 7.53e-117 | 340 |
| MS.gene93601.t1 | MTR_7g114970 | 59.353 | 278 | 109 | 4 | 6 | 280 | 9 | 285 | 1.08e-116 | 339 |
| MS.gene93601.t1 | MTR_1g102750 | 59.011 | 283 | 112 | 4 | 3 | 282 | 4 | 285 | 6.70e-116 | 338 |
| MS.gene93601.t1 | MTR_7g114970 | 58.781 | 279 | 111 | 4 | 4 | 279 | 7 | 284 | 1.93e-115 | 336 |
| MS.gene93601.t1 | MTR_7g021825 | 95.890 | 146 | 6 | 0 | 157 | 302 | 15 | 160 | 1.94e-101 | 296 |
| MS.gene93601.t1 | MTR_7g114970 | 57.025 | 242 | 94 | 4 | 97 | 331 | 8 | 246 | 1.19e-94 | 282 |
| MS.gene93601.t1 | MTR_7g114970 | 62.371 | 194 | 71 | 2 | 6 | 197 | 9 | 202 | 1.43e-83 | 252 |
| MS.gene93601.t1 | MTR_7g021670 | 87.692 | 130 | 16 | 0 | 1 | 130 | 1 | 130 | 3.19e-78 | 240 |
| MS.gene93601.t1 | MTR_7g021670 | 90.909 | 110 | 10 | 0 | 230 | 339 | 144 | 253 | 3.11e-66 | 209 |
| MS.gene93601.t1 | MTR_7g114970 | 55.224 | 201 | 80 | 4 | 138 | 331 | 1 | 198 | 3.61e-73 | 225 |
| MS.gene93601.t1 | MTR_7g021685 | 86.957 | 69 | 9 | 0 | 1 | 69 | 1 | 69 | 1.59e-38 | 133 |
| MS.gene93601.t1 | MTR_3g449790 | 30.702 | 342 | 182 | 10 | 6 | 314 | 37 | 356 | 2.94e-30 | 118 |
| MS.gene93601.t1 | MTR_3g449790 | 30.117 | 342 | 178 | 10 | 6 | 314 | 37 | 350 | 9.23e-30 | 117 |
| MS.gene93601.t1 | MTR_1g102740 | 48.571 | 105 | 50 | 1 | 232 | 332 | 3 | 107 | 2.28e-29 | 109 |
| MS.gene93601.t1 | MTR_3g092140 | 28.814 | 295 | 172 | 11 | 38 | 310 | 71 | 349 | 7.23e-25 | 105 |
| MS.gene93601.t1 | MTR_1g047250 | 28.000 | 325 | 202 | 12 | 9 | 312 | 6 | 319 | 5.48e-21 | 92.4 |
| MS.gene93601.t1 | MTR_1g042730 | 27.221 | 349 | 201 | 12 | 8 | 309 | 65 | 407 | 4.22e-18 | 85.1 |
| MS.gene93601.t1 | MTR_4g092750 | 29.167 | 216 | 138 | 6 | 8 | 213 | 5 | 215 | 1.47e-16 | 79.3 |
| MS.gene93601.t1 | MTR_4g092750 | 29.167 | 216 | 138 | 6 | 8 | 213 | 5 | 215 | 2.09e-16 | 79.3 |
| MS.gene93601.t1 | MTR_4g092750 | 29.167 | 216 | 138 | 6 | 8 | 213 | 5 | 215 | 2.56e-16 | 78.6 |
| MS.gene93601.t1 | MTR_8g088160 | 27.160 | 243 | 131 | 10 | 42 | 238 | 73 | 315 | 5.85e-12 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93601.t1 | AT1G60730 | 76.401 | 339 | 77 | 2 | 4 | 339 | 7 | 345 | 0.0 | 536 |
| MS.gene93601.t1 | AT1G60710 | 75.811 | 339 | 79 | 2 | 4 | 339 | 7 | 345 | 0.0 | 532 |
| MS.gene93601.t1 | AT1G60680 | 75.294 | 340 | 80 | 3 | 3 | 338 | 6 | 345 | 0.0 | 526 |
| MS.gene93601.t1 | AT1G60730 | 72.145 | 359 | 77 | 3 | 4 | 339 | 7 | 365 | 0.0 | 524 |
| MS.gene93601.t1 | AT1G60690 | 73.451 | 339 | 87 | 2 | 3 | 338 | 6 | 344 | 0.0 | 524 |
| MS.gene93601.t1 | AT1G10810 | 69.527 | 338 | 100 | 2 | 4 | 338 | 7 | 344 | 2.67e-175 | 490 |
| MS.gene93601.t1 | AT1G60750 | 70.882 | 340 | 78 | 4 | 3 | 338 | 7 | 329 | 1.73e-173 | 485 |
| MS.gene93601.t1 | AT1G10810 | 69.373 | 271 | 80 | 2 | 71 | 338 | 22 | 292 | 1.72e-137 | 392 |
| MS.gene93601.t1 | AT1G60680 | 78.166 | 229 | 48 | 2 | 3 | 229 | 6 | 234 | 3.66e-128 | 367 |
| MS.gene93601.t1 | AT1G10810 | 71.983 | 232 | 64 | 1 | 4 | 234 | 7 | 238 | 1.13e-120 | 348 |
| MS.gene93601.t1 | AT1G60730 | 74.101 | 139 | 35 | 1 | 4 | 141 | 7 | 145 | 1.30e-68 | 213 |
| MS.gene93601.t1 | AT5G53580 | 30.662 | 287 | 161 | 10 | 46 | 310 | 80 | 350 | 8.29e-27 | 109 |
| MS.gene93601.t1 | AT1G06690 | 30.070 | 286 | 171 | 9 | 46 | 314 | 94 | 367 | 4.26e-24 | 102 |
| MS.gene93601.t1 | AT1G04690 | 27.545 | 334 | 186 | 13 | 9 | 309 | 6 | 316 | 6.12e-23 | 97.8 |
| MS.gene93601.t1 | AT4G33670 | 25.532 | 329 | 211 | 9 | 1 | 315 | 1 | 309 | 2.75e-22 | 95.9 |
| MS.gene93601.t1 | AT1G04420 | 25.905 | 359 | 213 | 15 | 8 | 319 | 60 | 412 | 4.68e-17 | 82.0 |
Find 75 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTAATTTGGCTACAAAATT+TGG | 0.121716 | 7.3:+77818672 | MS.gene93601:CDS |
| TTGATTCAAGTTCTCAATTT+TGG | 0.160230 | 7.3:-77820443 | None:intergenic |
| TCCAACTGCACAGCTGTTAT+TGG | 0.217840 | 7.3:-77819136 | None:intergenic |
| CACACCAATGAAGTTCTTCT+TGG | 0.223012 | 7.3:+77818475 | MS.gene93601:CDS |
| TCATAATGATTTATTTCTTA+TGG | 0.227099 | 7.3:-77820618 | None:intergenic |
| AGTGAGAGAGAAAGTTAATT+TGG | 0.231011 | 7.3:+77818659 | MS.gene93601:CDS |
| CTTGACACTTCTGACTTCTA+TGG | 0.250488 | 7.3:+77818448 | MS.gene93601:CDS |
| TCAAGTTCTCCCATTTCTTC+TGG | 0.258309 | 7.3:-77820496 | None:intergenic |
| ATACTCCACCACTCTCTTCT+TGG | 0.280266 | 7.3:+77820584 | MS.gene93601:CDS |
| TTTCTTAGGGAACTTGGAAT+TGG | 0.323334 | 7.3:+77819469 | MS.gene93601:intron |
| ATGAGCATGTCTGCTTTCTA+TGG | 0.353634 | 7.3:+77818358 | MS.gene93601:CDS |
| GAAACTAACACCAGAAGAAA+TGG | 0.357383 | 7.3:+77820486 | MS.gene93601:CDS |
| ATCATGTCAGGTTCAGGTTT+AGG | 0.367686 | 7.3:-77818385 | None:intergenic |
| TGTGCTCTTCTGATTGTTGC+AGG | 0.371067 | 7.3:-77819103 | None:intergenic |
| CTTTCCAAGAAGAACTTCAT+TGG | 0.376886 | 7.3:-77818479 | None:intergenic |
| AGAGCAATCATGTCAGGTTC+AGG | 0.397066 | 7.3:-77818391 | None:intergenic |
| AAGACGTAATTCCAACTTGC+AGG | 0.402309 | 7.3:+77819188 | MS.gene93601:CDS |
| TGCAGTACATCCCTTCTTTG+TGG | 0.420403 | 7.3:-77820356 | None:intergenic |
| AATTGTGGAATAGGCTTTGA+AGG | 0.428009 | 7.3:+77818635 | MS.gene93601:intron |
| TTTGTAAGATTGGGGAGCTC+AGG | 0.433711 | 7.3:+77819029 | MS.gene93601:intron |
| GATTGTTGCAGGCGAGGCCT+CGG | 0.439243 | 7.3:-77819092 | None:intergenic |
| AAAAGTGACACCAGATTGTA+TGG | 0.442868 | 7.3:-77818425 | None:intergenic |
| ATATAGTCTGATTCTGCTGC+AGG | 0.450000 | 7.3:-77820312 | None:intergenic |
| TATGAGATCTGTGGTGATCC+AGG | 0.452334 | 7.3:+77818717 | MS.gene93601:CDS |
| GTTGCTTGACAACTTGCAAC+AGG | 0.458094 | 7.3:+77819543 | MS.gene93601:CDS |
| ATAGTTGCATATAGTCCTCT+TGG | 0.466082 | 7.3:+77819493 | MS.gene93601:CDS |
| AAAGTGGGAAGAATGAAGTT+AGG | 0.469687 | 7.3:+77818295 | MS.gene93601:CDS |
| CAATGAACTGGCCACAAAGA+AGG | 0.472154 | 7.3:+77820345 | MS.gene93601:CDS |
| AATCAAACTGTGATTTCAAT+CGG | 0.476703 | 7.3:-77818831 | None:intergenic |
| ATCCATCATGCCATACAATC+TGG | 0.476965 | 7.3:+77818415 | MS.gene93601:CDS |
| CATCTCAGCTTGCATTGGCA+TGG | 0.479749 | 7.3:+77820377 | MS.gene93601:CDS |
| TCGGGCACACGTCGTTTCCT+TGG | 0.481328 | 7.3:-77820408 | None:intergenic |
| ATTTGACAAAGTCAATGAAC+TGG | 0.487530 | 7.3:+77820333 | MS.gene93601:CDS |
| TCCAATAACAGCTGTGCAGT+TGG | 0.490955 | 7.3:+77819135 | MS.gene93601:CDS |
| CAAGCTTCTCTCACATAGCC+TGG | 0.497055 | 7.3:-77818735 | None:intergenic |
| CAATGAAGTTCTTCTTGGAA+AGG | 0.501797 | 7.3:+77818480 | MS.gene93601:CDS |
| TAAATATCACACCTGCAAGT+TGG | 0.505103 | 7.3:-77819199 | None:intergenic |
| AAACTAACACCAGAAGAAAT+GGG | 0.505399 | 7.3:+77820487 | MS.gene93601:CDS |
| CTCAGGAAACTTGTTGAAGA+GGG | 0.507897 | 7.3:+77819046 | MS.gene93601:CDS |
| AACGACGTGTGCCCGATACC+TGG | 0.512377 | 7.3:+77820415 | MS.gene93601:CDS |
| AGTGAGAGCAATGACAAAAG+TGG | 0.514444 | 7.3:+77818279 | None:intergenic |
| TACTGCATCTCAGCTTGCAT+TGG | 0.515172 | 7.3:+77820372 | MS.gene93601:CDS |
| AATGAACTGGCCACAAAGAA+GGG | 0.518216 | 7.3:+77820346 | MS.gene93601:CDS |
| TCTTCTGATTGTTGCAGGCG+AGG | 0.536060 | 7.3:-77819098 | None:intergenic |
| CACCAGATTGTATGGCATGA+TGG | 0.536537 | 7.3:-77818417 | None:intergenic |
| TAGTTGCATATAGTCCTCTT+GGG | 0.540181 | 7.3:+77819494 | MS.gene93601:CDS |
| GCATATAGTCCTCTTGGGCG+AGG | 0.551187 | 7.3:+77819499 | MS.gene93601:CDS |
| GTGAGAGCAATGACAAAAGT+GGG | 0.558741 | 7.3:+77818280 | None:intergenic |
| GAGGGGAAAATAAAATACAT+AGG | 0.559341 | 7.3:+77819064 | MS.gene93601:CDS |
| TGGATGAGAGCAATCATGTC+AGG | 0.561182 | 7.3:-77818397 | None:intergenic |
| GAAGTTAGGATCACAAGGCA+TGG | 0.564034 | 7.3:+77818309 | MS.gene93601:CDS |
| GAGAACTTGAATCAAAACAT+TGG | 0.571832 | 7.3:+77820451 | MS.gene93601:CDS |
| GAAGAACTTCATTGGTGTGA+GGG | 0.571972 | 7.3:-77818471 | None:intergenic |
| GCTCAGGAAACTTGTTGAAG+AGG | 0.576635 | 7.3:+77819045 | MS.gene93601:CDS |
| ATGTCAGGTTCAGGTTTAGG+AGG | 0.578905 | 7.3:-77818382 | None:intergenic |
| GGCATGGAAGTGTCCTTGCA+AGG | 0.583936 | 7.3:+77818325 | MS.gene93601:CDS |
| TAAGAGTGGTAGATATGTAG+AGG | 0.597868 | 7.3:+77820537 | MS.gene93601:CDS |
| TTAGCAAATGCTGTTAAGAG+TGG | 0.598227 | 7.3:+77820523 | MS.gene93601:CDS |
| ACTTGCAACAGGATGACTAC+AGG | 0.598957 | 7.3:+77819554 | MS.gene93601:CDS |
| TAACAGCTGTGCAGTTGGAG+TGG | 0.606322 | 7.3:+77819140 | MS.gene93601:CDS |
| ATTGTGGAATAGGCTTTGAA+GGG | 0.607262 | 7.3:+77818636 | MS.gene93601:intron |
| TGCAGTTGGAGTGGTCATTG+TGG | 0.610140 | 7.3:+77819149 | MS.gene93601:CDS |
| ATGTAGAGGATACAAGTACA+TGG | 0.611228 | 7.3:+77820551 | MS.gene93601:CDS |
| CATGCAACTAAGTCCTTGCA+AGG | 0.616712 | 7.3:-77818338 | None:intergenic |
| GAAAAGAATCCTCGCCCAAG+AGG | 0.632204 | 7.3:-77819508 | None:intergenic |
| AGAAGAACTTCATTGGTGTG+AGG | 0.636443 | 7.3:-77818472 | None:intergenic |
| GCTTTCCAAGAAGAGAGTGG+TGG | 0.651055 | 7.3:-77820589 | None:intergenic |
| ATTGTGGTCAAGAGATGTCG+AGG | 0.654297 | 7.3:+77819165 | MS.gene93601:CDS |
| AGAATGAAGTTAGGATCACA+AGG | 0.663773 | 7.3:+77818304 | MS.gene93601:CDS |
| GCAACAGGATGACTACAGGA+AGG | 0.666822 | 7.3:+77819558 | MS.gene93601:CDS |
| AAAATACATAGGTTTGTCCG+AGG | 0.673641 | 7.3:+77819075 | MS.gene93601:CDS |
| TTGGCATGGCTTCATCACCA+AGG | 0.680145 | 7.3:+77820391 | MS.gene93601:CDS |
| TCAGGAAACTTGTTGAAGAG+GGG | 0.681801 | 7.3:+77819047 | MS.gene93601:CDS |
| GCAGCTTTCCAAGAAGAGAG+TGG | 0.687488 | 7.3:-77820592 | None:intergenic |
| GAAGAGAAATATGAGATCTG+TGG | 0.699778 | 7.3:+77818708 | MS.gene93601:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTAAACTAATCTAAC+AGG | + | chr7.3:77818942-77818961 | MS.gene93601:intron | 15.0% |
| !! | AAAATTAAACTAATCTAACA+GGG | + | chr7.3:77818943-77818962 | MS.gene93601:intron | 15.0% |
| !! | TAAAAATTAAAAACATTGGA+TGG | + | chr7.3:77820040-77820059 | MS.gene93601:intron | 15.0% |
| !!! | AGTTATAATTTTCTTTCTTA+GGG | + | chr7.3:77819456-77819475 | MS.gene93601:intron | 15.0% |
| !!! | TTCTTTTGATTTAAATTTCT+GGG | + | chr7.3:77818531-77818550 | MS.gene93601:intron | 15.0% |
| !!! | TTTCTTTTGATTTAAATTTC+TGG | + | chr7.3:77818530-77818549 | MS.gene93601:intron | 15.0% |
| !! | AAATCAAAAGAAAAGCTAAA+AGG | - | chr7.3:77818523-77818542 | None:intergenic | 20.0% |
| !! | AATCAAAAGAAAAGCTAAAA+GGG | - | chr7.3:77818522-77818541 | None:intergenic | 20.0% |
| !! | TTTCTTCCATAAAACAATTT+GGG | + | chr7.3:77819737-77819756 | MS.gene93601:intron | 20.0% |
| !!! | ACAAGTCTTAGTTTTTTAAA+AGG | + | chr7.3:77819890-77819909 | MS.gene93601:intron | 20.0% |
| !!! | ATTTTACTAACATGCTTAAA+AGG | - | chr7.3:77820257-77820276 | None:intergenic | 20.0% |
| !!! | GAGTTATAATTTTCTTTCTT+AGG | + | chr7.3:77819455-77819474 | MS.gene93601:intron | 20.0% |
| !!! | TATTTTACACAAGTTCTTTA+TGG | + | chr7.3:77820135-77820154 | MS.gene93601:intron | 20.0% |
| !!! | TTTTCATCATTTCATTCATT+AGG | + | chr7.3:77820089-77820108 | MS.gene93601:intron | 20.0% |
| !!! | TTTTCTTCCATAAAACAATT+TGG | + | chr7.3:77819736-77819755 | MS.gene93601:intron | 20.0% |
| ! | AAAAAACTAAGACTTGTCAT+AGG | - | chr7.3:77819887-77819906 | None:intergenic | 25.0% |
| ! | AATCAAACTGTGATTTCAAT+CGG | - | chr7.3:77818834-77818853 | None:intergenic | 25.0% |
| ! | ATAACACCAACAATTCAAAT+TGG | - | chr7.3:77819412-77819431 | None:intergenic | 25.0% |
| ! | ATGTTAGTAAAATATGTTGC+AGG | + | chr7.3:77820264-77820283 | MS.gene93601:intron | 25.0% |
| ! | ATTTGTGTGTCTTGTAAATT+AGG | + | chr7.3:77820214-77820233 | MS.gene93601:intron | 25.0% |
| ! | TATATACATGCATGAAACAA+AGG | - | chr7.3:77820117-77820136 | None:intergenic | 25.0% |
| ! | TCATTGATGTATGACATTAA+AGG | - | chr7.3:77819687-77819706 | None:intergenic | 25.0% |
| ! | TTGTATCAGATAGAGAAAAA+TGG | - | chr7.3:77819253-77819272 | None:intergenic | 25.0% |
| ! | TTTGTGTGTCTTGTAAATTA+GGG | + | chr7.3:77820215-77820234 | MS.gene93601:intron | 25.0% |
| !! | GTTAATTTGGCTACAAAATT+TGG | + | chr7.3:77818672-77818691 | MS.gene93601:CDS | 25.0% |
| !!! | TATGATTGTGAATTTTGATG+AGG | + | chr7.3:77818606-77818625 | MS.gene93601:intron | 25.0% |
| !!! | TGTGATTACTTCAACTTTTT+TGG | + | chr7.3:77819001-77819020 | MS.gene93601:intron | 25.0% |
| !!! | TTGATTCAAGTTCTCAATTT+TGG | - | chr7.3:77820446-77820465 | None:intergenic | 25.0% |
| !!! | TTGGTTTTCTTTGTAAGATT+GGG | + | chr7.3:77819020-77819039 | MS.gene93601:intron | 25.0% |
| !!! | TTTGGTTTTCTTTGTAAGAT+TGG | + | chr7.3:77819019-77819038 | MS.gene93601:intron | 25.0% |
| AAACTAACACCAGAAGAAAT+GGG | + | chr7.3:77820487-77820506 | MS.gene93601:CDS | 30.0% | |
| ACCAAATCAGAGAAATGAAA+AGG | - | chr7.3:77818861-77818880 | None:intergenic | 30.0% | |
| AGTGAGAGAGAAAGTTAATT+TGG | + | chr7.3:77818659-77818678 | MS.gene93601:CDS | 30.0% | |
| ATGCTTCCAATTTGAATTGT+TGG | + | chr7.3:77819403-77819422 | MS.gene93601:intron | 30.0% | |
| ATTTGACAAAGTCAATGAAC+TGG | + | chr7.3:77820333-77820352 | MS.gene93601:CDS | 30.0% | |
| CATGCTTAAAAGGAAGAATA+TGG | - | chr7.3:77820247-77820266 | None:intergenic | 30.0% | |
| CCAAATCAGAGAAATGAAAA+GGG | - | chr7.3:77818860-77818879 | None:intergenic | 30.0% | |
| CCATAAAACAATTTGGGAAT+AGG | + | chr7.3:77819743-77819762 | MS.gene93601:intron | 30.0% | |
| GAGAACTTGAATCAAAACAT+TGG | + | chr7.3:77820451-77820470 | MS.gene93601:CDS | 30.0% | |
| GAGGGGAAAATAAAATACAT+AGG | + | chr7.3:77819064-77819083 | MS.gene93601:CDS | 30.0% | |
| ! | ATTCAAATTGGAAGCATGTT+TGG | - | chr7.3:77819400-77819419 | None:intergenic | 30.0% |
| ! | ATTTTCTTTCTTAGGGAACT+TGG | + | chr7.3:77819463-77819482 | MS.gene93601:intron | 30.0% |
| ! | TGGTTTTCTTTGTAAGATTG+GGG | + | chr7.3:77819021-77819040 | MS.gene93601:intron | 30.0% |
| !! | ATTCAAGTTCTCAATTTTGG+TGG | - | chr7.3:77820443-77820462 | None:intergenic | 30.0% |
| !! | CACAACCATGGATTATTTTA+GGG | + | chr7.3:77819660-77819679 | MS.gene93601:intron | 30.0% |
| !! | CCTATTCCCAAATTGTTTTA+TGG | - | chr7.3:77819746-77819765 | None:intergenic | 30.0% |
| !! | TCACAACCATGGATTATTTT+AGG | + | chr7.3:77819659-77819678 | MS.gene93601:intron | 30.0% |
| !! | TTGTGAATTTTGATGAGGTT+TGG | + | chr7.3:77818611-77818630 | MS.gene93601:intron | 30.0% |
| !!! | TCATTTCTCTGATTTGGTTT+TGG | + | chr7.3:77818863-77818882 | MS.gene93601:intron | 30.0% |
| AAAAGTGACACCAGATTGTA+TGG | - | chr7.3:77818428-77818447 | None:intergenic | 35.0% | |
| AAAATACATAGGTTTGTCCG+AGG | + | chr7.3:77819075-77819094 | MS.gene93601:CDS | 35.0% | |
| AAAGTGGGAAGAATGAAGTT+AGG | + | chr7.3:77818295-77818314 | MS.gene93601:CDS | 35.0% | |
| AAGGACCCTAAAATAATCCA+TGG | - | chr7.3:77819668-77819687 | None:intergenic | 35.0% | |
| AGAATGAAGTTAGGATCACA+AGG | + | chr7.3:77818304-77818323 | MS.gene93601:CDS | 35.0% | |
| AGGTTTGGAAATTGTGGAAT+AGG | + | chr7.3:77818626-77818645 | MS.gene93601:intron | 35.0% | |
| ATAGTTGCATATAGTCCTCT+TGG | + | chr7.3:77819493-77819512 | MS.gene93601:CDS | 35.0% | |
| ATCAACACACATTGATCACA+TGG | - | chr7.3:77819839-77819858 | None:intergenic | 35.0% | |
| ATGGGACTAAGAGGTTAATT+AGG | - | chr7.3:77819938-77819957 | None:intergenic | 35.0% | |
| ATGTAGAGGATACAAGTACA+TGG | + | chr7.3:77820551-77820570 | MS.gene93601:CDS | 35.0% | |
| CAATGAAGTTCTTCTTGGAA+AGG | + | chr7.3:77818480-77818499 | MS.gene93601:CDS | 35.0% | |
| CTTTCCAAGAAGAACTTCAT+TGG | - | chr7.3:77818482-77818501 | None:intergenic | 35.0% | |
| GAAACAAGGAAAATGTGATG+TGG | + | chr7.3:77820066-77820085 | MS.gene93601:intron | 35.0% | |
| GAAACTAACACCAGAAGAAA+TGG | + | chr7.3:77820486-77820505 | MS.gene93601:CDS | 35.0% | |
| GAAGAGAAATATGAGATCTG+TGG | + | chr7.3:77818708-77818727 | MS.gene93601:CDS | 35.0% | |
| GGAGTTATCATGTAGATTGT+AGG | - | chr7.3:77819866-77819885 | None:intergenic | 35.0% | |
| TAAATATCACACCTGCAAGT+TGG | - | chr7.3:77819202-77819221 | None:intergenic | 35.0% | |
| TAAGAGTGGTAGATATGTAG+AGG | + | chr7.3:77820537-77820556 | MS.gene93601:CDS | 35.0% | |
| TAGTTGCATATAGTCCTCTT+GGG | + | chr7.3:77819494-77819513 | MS.gene93601:CDS | 35.0% | |
| TGGGACTAAGAGGTTAATTA+GGG | - | chr7.3:77819937-77819956 | None:intergenic | 35.0% | |
| TTAGCAAATGCTGTTAAGAG+TGG | + | chr7.3:77820523-77820542 | MS.gene93601:CDS | 35.0% | |
| TTGATGAGGTTTGGAAATTG+TGG | + | chr7.3:77818620-77818639 | MS.gene93601:intron | 35.0% | |
| TTTCTTAGGGAACTTGGAAT+TGG | + | chr7.3:77819469-77819488 | MS.gene93601:intron | 35.0% | |
| ! | AATGAGTACCATGAAGCATT+AGG | + | chr7.3:77818893-77818912 | MS.gene93601:intron | 35.0% |
| ! | AATTGTGGAATAGGCTTTGA+AGG | + | chr7.3:77818635-77818654 | MS.gene93601:intron | 35.0% |
| ! | ACATTGGATGGTTTGAAACA+AGG | + | chr7.3:77820052-77820071 | MS.gene93601:intron | 35.0% |
| ! | CCCTTTTCATTTCTCTGATT+TGG | + | chr7.3:77818857-77818876 | MS.gene93601:intron | 35.0% |
| !! | ATTGTGGAATAGGCTTTGAA+GGG | + | chr7.3:77818636-77818655 | MS.gene93601:intron | 35.0% |
| !! | TAGTTTTGCCTAATGCTTCA+TGG | - | chr7.3:77818904-77818923 | None:intergenic | 35.0% |
| AAGACGTAATTCCAACTTGC+AGG | + | chr7.3:77819188-77819207 | MS.gene93601:CDS | 40.0% | |
| AAGAGGTTAATTAGGGGAAG+TGG | - | chr7.3:77819930-77819949 | None:intergenic | 40.0% | |
| AATGAACTGGCCACAAAGAA+GGG | + | chr7.3:77820346-77820365 | MS.gene93601:CDS | 40.0% | |
| AGAAGAACTTCATTGGTGTG+AGG | - | chr7.3:77818475-77818494 | None:intergenic | 40.0% | |
| ATATAGTCTGATTCTGCTGC+AGG | - | chr7.3:77820315-77820334 | None:intergenic | 40.0% | |
| ATCCATCATGCCATACAATC+TGG | + | chr7.3:77818415-77818434 | MS.gene93601:CDS | 40.0% | |
| ATGAGCATGTCTGCTTTCTA+TGG | + | chr7.3:77818358-77818377 | MS.gene93601:CDS | 40.0% | |
| CACACCAATGAAGTTCTTCT+TGG | + | chr7.3:77818475-77818494 | MS.gene93601:CDS | 40.0% | |
| CTTGACACTTCTGACTTCTA+TGG | + | chr7.3:77818448-77818467 | MS.gene93601:CDS | 40.0% | |
| GAAGAACTTCATTGGTGTGA+GGG | - | chr7.3:77818474-77818493 | None:intergenic | 40.0% | |
| GATATCAACATGGGACTAAG+AGG | - | chr7.3:77819947-77819966 | None:intergenic | 40.0% | |
| GGGAATAGGTGTAACAGTAA+TGG | + | chr7.3:77819757-77819776 | MS.gene93601:intron | 40.0% | |
| GGGACTAAGAGGTTAATTAG+GGG | - | chr7.3:77819936-77819955 | None:intergenic | 40.0% | |
| GTTGGTCATCGAATATCTTC+TGG | - | chr7.3:77819977-77819996 | None:intergenic | 40.0% | |
| TCAAGTTCTCCCATTTCTTC+TGG | - | chr7.3:77820499-77820518 | None:intergenic | 40.0% | |
| TGCTGCTAGTGAACACAATT+CGG | + | chr7.3:77819794-77819813 | MS.gene93601:intron | 40.0% | |
| ! | ATCATGTCAGGTTCAGGTTT+AGG | - | chr7.3:77818388-77818407 | None:intergenic | 40.0% |
| !! | ATTTTGGTGGTTCCAGGTAT+CGG | - | chr7.3:77820430-77820449 | None:intergenic | 40.0% |
| !! | CTCAGGAAACTTGTTGAAGA+GGG | + | chr7.3:77819046-77819065 | MS.gene93601:CDS | 40.0% |
| !! | TCAGGAAACTTGTTGAAGAG+GGG | + | chr7.3:77819047-77819066 | MS.gene93601:CDS | 40.0% |
| !! | TGTTCGTGACGTTTTAGTGT+CGG | + | chr7.3:77819371-77819390 | MS.gene93601:intron | 40.0% |
| !! | TTCTCAATTTTGGTGGTTCC+AGG | - | chr7.3:77820436-77820455 | None:intergenic | 40.0% |
| !!! | AGGTTTTCAGGTTGAAATCG+AGG | - | chr7.3:77820295-77820314 | None:intergenic | 40.0% |
| ACTTGCAACAGGATGACTAC+AGG | + | chr7.3:77819554-77819573 | MS.gene93601:CDS | 45.0% | |
| AGAGCAATCATGTCAGGTTC+AGG | - | chr7.3:77818394-77818413 | None:intergenic | 45.0% | |
| ATACTCCACCACTCTCTTCT+TGG | + | chr7.3:77820584-77820603 | MS.gene93601:CDS | 45.0% | |
| ATTGTGGTCAAGAGATGTCG+AGG | + | chr7.3:77819165-77819184 | MS.gene93601:CDS | 45.0% | |
| CAATGAACTGGCCACAAAGA+AGG | + | chr7.3:77820345-77820364 | MS.gene93601:CDS | 45.0% | |
| CACCAGATTGTATGGCATGA+TGG | - | chr7.3:77818420-77818439 | None:intergenic | 45.0% | |
| CATGCAACTAAGTCCTTGCA+AGG | - | chr7.3:77818341-77818360 | None:intergenic | 45.0% | |
| CATGGTTGTGAATCACTGCT+AGG | - | chr7.3:77819650-77819669 | None:intergenic | 45.0% | |
| CTAGCAGTGATTCACAACCA+TGG | + | chr7.3:77819648-77819667 | MS.gene93601:intron | 45.0% | |
| GAAGTTAGGATCACAAGGCA+TGG | + | chr7.3:77818309-77818328 | MS.gene93601:CDS | 45.0% | |
| GATGACTACAGGAAGGTTTG+TGG | + | chr7.3:77819565-77819584 | MS.gene93601:intron | 45.0% | |
| GGCGGTTCAGATATCAACAT+GGG | - | chr7.3:77819956-77819975 | None:intergenic | 45.0% | |
| GGTCATCGAATATCTTCTGG+CGG | - | chr7.3:77819974-77819993 | None:intergenic | 45.0% | |
| GGTTAATTAGGGGAAGTGGA+AGG | - | chr7.3:77819926-77819945 | None:intergenic | 45.0% | |
| GTTGCTTGACAACTTGCAAC+AGG | + | chr7.3:77819543-77819562 | MS.gene93601:CDS | 45.0% | |
| TACTGCATCTCAGCTTGCAT+TGG | + | chr7.3:77820372-77820391 | MS.gene93601:CDS | 45.0% | |
| TATGAGATCTGTGGTGATCC+AGG | + | chr7.3:77818717-77818736 | MS.gene93601:CDS | 45.0% | |
| TCCAACTGCACAGCTGTTAT+TGG | - | chr7.3:77819139-77819158 | None:intergenic | 45.0% | |
| TCCAATAACAGCTGTGCAGT+TGG | + | chr7.3:77819135-77819154 | MS.gene93601:CDS | 45.0% | |
| TGCAGTACATCCCTTCTTTG+TGG | - | chr7.3:77820359-77820378 | None:intergenic | 45.0% | |
| TGGATGAGAGCAATCATGTC+AGG | - | chr7.3:77818400-77818419 | None:intergenic | 45.0% | |
| TGGCGGTTCAGATATCAACA+TGG | - | chr7.3:77819957-77819976 | None:intergenic | 45.0% | |
| TGTGCTCTTCTGATTGTTGC+AGG | - | chr7.3:77819106-77819125 | None:intergenic | 45.0% | |
| TTTGTAAGATTGGGGAGCTC+AGG | + | chr7.3:77819029-77819048 | MS.gene93601:intron | 45.0% | |
| ! | ATGTCAGGTTCAGGTTTAGG+AGG | - | chr7.3:77818385-77818404 | None:intergenic | 45.0% |
| ! | TGATTCTGCTGCAGGTTTTC+AGG | - | chr7.3:77820307-77820326 | None:intergenic | 45.0% |
| ! | TGGGCGAGGATTCTTTTCAT+CGG | + | chr7.3:77819513-77819532 | MS.gene93601:CDS | 45.0% |
| !! | GCTCAGGAAACTTGTTGAAG+AGG | + | chr7.3:77819045-77819064 | MS.gene93601:CDS | 45.0% |
| !! | TTTTGGTGGTTCCAGGTATC+GGG | - | chr7.3:77820429-77820448 | None:intergenic | 45.0% |
| !! | TTAAAAAATAAATAAATAAC+TGG | + | chr7.3:77820004-77820023 | MS.gene93601:intron | 5.0% |
| !! | TTAATAAAAATTAAAAACAT+TGG | + | chr7.3:77820036-77820055 | MS.gene93601:intron | 5.0% |
| !!! | TTATTTTTTAAAATTTTTGT+TGG | - | chr7.3:77819995-77820014 | None:intergenic | 5.0% |
| CAAGCTTCTCTCACATAGCC+TGG | - | chr7.3:77818738-77818757 | None:intergenic | 50.0% | |
| GAAAAGAATCCTCGCCCAAG+AGG | - | chr7.3:77819511-77819530 | None:intergenic | 50.0% | |
| GCAACAGGATGACTACAGGA+AGG | + | chr7.3:77819558-77819577 | MS.gene93601:CDS | 50.0% | |
| GCAGCTTTCCAAGAAGAGAG+TGG | - | chr7.3:77820595-77820614 | None:intergenic | 50.0% | |
| GCTTTCCAAGAAGAGAGTGG+TGG | - | chr7.3:77820592-77820611 | None:intergenic | 50.0% | |
| TAACAGCTGTGCAGTTGGAG+TGG | + | chr7.3:77819140-77819159 | MS.gene93601:CDS | 50.0% | |
| TCTTCTGATTGTTGCAGGCG+AGG | - | chr7.3:77819101-77819120 | None:intergenic | 50.0% | |
| TGCAGTTGGAGTGGTCATTG+TGG | + | chr7.3:77819149-77819168 | MS.gene93601:CDS | 50.0% | |
| TTGGCATGGCTTCATCACCA+AGG | + | chr7.3:77820391-77820410 | MS.gene93601:CDS | 50.0% | |
| ! | CATCTCAGCTTGCATTGGCA+TGG | + | chr7.3:77820377-77820396 | MS.gene93601:CDS | 50.0% |
| ! | GGGCGAGGATTCTTTTCATC+GGG | + | chr7.3:77819514-77819533 | MS.gene93601:CDS | 50.0% |
| GCATATAGTCCTCTTGGGCG+AGG | + | chr7.3:77819499-77819518 | MS.gene93601:CDS | 55.0% | |
| !! | GGCATGGAAGTGTCCTTGCA+AGG | + | chr7.3:77818325-77818344 | MS.gene93601:CDS | 55.0% |
| AACGACGTGTGCCCGATACC+TGG | + | chr7.3:77820415-77820434 | MS.gene93601:CDS | 60.0% | |
| GATTGTTGCAGGCGAGGCCT+CGG | - | chr7.3:77819095-77819114 | None:intergenic | 60.0% | |
| TCGGGCACACGTCGTTTCCT+TGG | - | chr7.3:77820411-77820430 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 77818289 | 77820630 | 77818289 | ID=MS.gene93601 |
| chr7.3 | mRNA | 77818289 | 77820630 | 77818289 | ID=MS.gene93601.t1;Parent=MS.gene93601 |
| chr7.3 | exon | 77818289 | 77818501 | 77818289 | ID=MS.gene93601.t1.exon1;Parent=MS.gene93601.t1 |
| chr7.3 | CDS | 77818289 | 77818501 | 77818289 | ID=cds.MS.gene93601.t1;Parent=MS.gene93601.t1 |
| chr7.3 | exon | 77818648 | 77818845 | 77818648 | ID=MS.gene93601.t1.exon2;Parent=MS.gene93601.t1 |
| chr7.3 | CDS | 77818648 | 77818845 | 77818648 | ID=cds.MS.gene93601.t1;Parent=MS.gene93601.t1 |
| chr7.3 | exon | 77819037 | 77819209 | 77819037 | ID=MS.gene93601.t1.exon3;Parent=MS.gene93601.t1 |
| chr7.3 | CDS | 77819037 | 77819209 | 77819037 | ID=cds.MS.gene93601.t1;Parent=MS.gene93601.t1 |
| chr7.3 | exon | 77819477 | 77819579 | 77819477 | ID=MS.gene93601.t1.exon4;Parent=MS.gene93601.t1 |
| chr7.3 | CDS | 77819477 | 77819579 | 77819477 | ID=cds.MS.gene93601.t1;Parent=MS.gene93601.t1 |
| chr7.3 | exon | 77820286 | 77820630 | 77820286 | ID=MS.gene93601.t1.exon5;Parent=MS.gene93601.t1 |
| chr7.3 | CDS | 77820286 | 77820630 | 77820286 | ID=cds.MS.gene93601.t1;Parent=MS.gene93601.t1 |
| Gene Sequence |
| Protein sequence |
