Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93616.t1 | XP_003621701.1 | 93.8 | 338 | 20 | 1 | 1 | 338 | 1 | 337 | 2.90E-181 | 644.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93616.t1 | Q7XT99 | 78.3 | 341 | 70 | 2 | 3 | 339 | 10 | 350 | 3.3e-157 | 555.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93616.t1 | A2Q5B6 | 93.8 | 338 | 20 | 1 | 1 | 338 | 1 | 337 | 2.1e-181 | 644.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93616.t1 | MTR_7g021850 | 93.787 | 338 | 20 | 1 | 1 | 338 | 1 | 337 | 0.0 | 657 |
| MS.gene93616.t1 | MTR_7g021680 | 89.706 | 340 | 34 | 1 | 1 | 340 | 1 | 339 | 0.0 | 641 |
| MS.gene93616.t1 | MTR_7g021820 | 89.706 | 340 | 34 | 1 | 1 | 340 | 1 | 339 | 0.0 | 641 |
| MS.gene93616.t1 | MTR_1g102750 | 59.821 | 336 | 128 | 5 | 4 | 333 | 5 | 339 | 8.46e-140 | 400 |
| MS.gene93616.t1 | MTR_7g114980 | 58.160 | 337 | 131 | 5 | 6 | 333 | 13 | 348 | 9.87e-138 | 395 |
| MS.gene93616.t1 | MTR_7g114990 | 57.530 | 332 | 133 | 5 | 7 | 333 | 16 | 344 | 1.80e-137 | 394 |
| MS.gene93616.t1 | MTR_7g114970 | 55.917 | 338 | 142 | 5 | 4 | 335 | 7 | 343 | 3.04e-131 | 378 |
| MS.gene93616.t1 | MTR_7g115010 | 53.433 | 335 | 133 | 5 | 6 | 333 | 11 | 329 | 3.65e-126 | 365 |
| MS.gene93616.t1 | MTR_1g102750 | 62.411 | 282 | 103 | 3 | 4 | 283 | 5 | 285 | 8.87e-124 | 358 |
| MS.gene93616.t1 | MTR_7g114980 | 61.210 | 281 | 103 | 3 | 6 | 281 | 13 | 292 | 1.32e-120 | 349 |
| MS.gene93616.t1 | MTR_7g114970 | 60.714 | 280 | 107 | 3 | 4 | 281 | 7 | 285 | 2.39e-120 | 348 |
| MS.gene93616.t1 | MTR_7g114970 | 60.573 | 279 | 107 | 3 | 4 | 280 | 7 | 284 | 1.97e-119 | 346 |
| MS.gene93616.t1 | MTR_7g021825 | 89.726 | 146 | 15 | 0 | 158 | 303 | 15 | 160 | 6.71e-98 | 286 |
| MS.gene93616.t1 | MTR_7g114970 | 57.895 | 247 | 98 | 4 | 94 | 335 | 4 | 249 | 5.86e-96 | 285 |
| MS.gene93616.t1 | MTR_7g114970 | 63.402 | 194 | 70 | 1 | 6 | 198 | 9 | 202 | 1.49e-85 | 257 |
| MS.gene93616.t1 | MTR_7g114970 | 57.286 | 199 | 79 | 4 | 139 | 332 | 1 | 198 | 8.72e-74 | 227 |
| MS.gene93616.t1 | MTR_7g021670 | 83.206 | 131 | 21 | 1 | 1 | 131 | 1 | 130 | 5.51e-73 | 226 |
| MS.gene93616.t1 | MTR_7g021670 | 87.963 | 108 | 13 | 0 | 232 | 339 | 145 | 252 | 1.81e-64 | 205 |
| MS.gene93616.t1 | MTR_7g021685 | 86.957 | 69 | 9 | 0 | 1 | 69 | 1 | 69 | 9.51e-39 | 134 |
| MS.gene93616.t1 | MTR_3g449790 | 29.885 | 348 | 188 | 11 | 1 | 315 | 32 | 356 | 8.71e-32 | 122 |
| MS.gene93616.t1 | MTR_3g449790 | 29.310 | 348 | 184 | 11 | 1 | 315 | 32 | 350 | 2.21e-31 | 121 |
| MS.gene93616.t1 | MTR_1g102740 | 51.852 | 108 | 42 | 2 | 233 | 333 | 3 | 107 | 2.75e-31 | 114 |
| MS.gene93616.t1 | MTR_1g042730 | 27.143 | 350 | 201 | 14 | 8 | 310 | 65 | 407 | 4.41e-23 | 99.4 |
| MS.gene93616.t1 | MTR_3g092140 | 27.609 | 297 | 178 | 11 | 36 | 311 | 69 | 349 | 9.76e-23 | 99.4 |
| MS.gene93616.t1 | MTR_1g047250 | 27.077 | 325 | 206 | 12 | 9 | 313 | 6 | 319 | 4.33e-20 | 89.7 |
| MS.gene93616.t1 | MTR_4g092750 | 31.019 | 216 | 135 | 7 | 8 | 214 | 5 | 215 | 4.45e-17 | 80.9 |
| MS.gene93616.t1 | MTR_4g092750 | 31.019 | 216 | 135 | 7 | 8 | 214 | 5 | 215 | 5.36e-17 | 80.9 |
| MS.gene93616.t1 | MTR_4g092750 | 31.019 | 216 | 135 | 7 | 8 | 214 | 5 | 215 | 1.01e-16 | 79.7 |
| MS.gene93616.t1 | MTR_8g088160 | 25.735 | 272 | 151 | 11 | 14 | 239 | 49 | 315 | 2.43e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93616.t1 | AT1G60710 | 77.811 | 338 | 73 | 1 | 4 | 339 | 7 | 344 | 0.0 | 552 |
| MS.gene93616.t1 | AT1G60730 | 77.811 | 338 | 73 | 1 | 4 | 339 | 7 | 344 | 0.0 | 549 |
| MS.gene93616.t1 | AT1G60690 | 76.401 | 339 | 78 | 1 | 4 | 340 | 7 | 345 | 0.0 | 548 |
| MS.gene93616.t1 | AT1G60680 | 75.811 | 339 | 79 | 2 | 4 | 339 | 7 | 345 | 0.0 | 539 |
| MS.gene93616.t1 | AT1G60730 | 73.464 | 358 | 73 | 2 | 4 | 339 | 7 | 364 | 0.0 | 536 |
| MS.gene93616.t1 | AT1G10810 | 71.765 | 340 | 94 | 1 | 2 | 339 | 5 | 344 | 0.0 | 511 |
| MS.gene93616.t1 | AT1G60750 | 72.566 | 339 | 73 | 3 | 4 | 339 | 8 | 329 | 1.50e-179 | 500 |
| MS.gene93616.t1 | AT1G10810 | 71.956 | 271 | 74 | 1 | 71 | 339 | 22 | 292 | 2.58e-145 | 412 |
| MS.gene93616.t1 | AT1G60680 | 79.386 | 228 | 46 | 1 | 4 | 230 | 7 | 234 | 4.98e-132 | 376 |
| MS.gene93616.t1 | AT1G10810 | 73.932 | 234 | 61 | 0 | 2 | 235 | 5 | 238 | 4.29e-124 | 357 |
| MS.gene93616.t1 | AT1G60730 | 76.259 | 139 | 33 | 0 | 4 | 142 | 7 | 145 | 5.27e-73 | 224 |
| MS.gene93616.t1 | AT1G06690 | 29.819 | 332 | 199 | 11 | 6 | 315 | 48 | 367 | 1.05e-26 | 108 |
| MS.gene93616.t1 | AT5G53580 | 30.000 | 290 | 160 | 11 | 46 | 311 | 80 | 350 | 9.88e-26 | 106 |
| MS.gene93616.t1 | AT1G04690 | 27.987 | 318 | 180 | 11 | 8 | 297 | 5 | 301 | 1.49e-24 | 102 |
| MS.gene93616.t1 | AT1G04420 | 26.479 | 355 | 207 | 14 | 8 | 315 | 60 | 407 | 3.82e-23 | 99.8 |
| MS.gene93616.t1 | AT4G33670 | 26.829 | 328 | 207 | 10 | 1 | 315 | 1 | 308 | 6.00e-23 | 97.8 |
| MS.gene93616.t1 | AT2G37790 | 25.723 | 311 | 166 | 14 | 43 | 328 | 35 | 305 | 1.62e-12 | 67.8 |
Find 76 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATTTCCCTTCAATATATT+TGG | 0.148190 | 7.3:-77713364 | None:intergenic |
| TCCAATTGCACAGCTGTTAT+TGG | 0.154954 | 7.3:-77714017 | None:intergenic |
| TTGATTAAAGTTCTCCATTT+TGG | 0.183974 | 7.3:-77715013 | None:intergenic |
| AAGAAATAATTCCAACTTGC+AGG | 0.276199 | 7.3:+77714069 | MS.gene93616:CDS |
| ATACTCCACCACTCTCTTCT+TGG | 0.280266 | 7.3:+77715154 | MS.gene93616:CDS |
| CTTGATACCTCTGACATCTA+TGG | 0.288925 | 7.3:+77713082 | MS.gene93616:CDS |
| GTTGAATTGGCTACAAAGTT+TGG | 0.298080 | 7.3:+77713339 | MS.gene93616:CDS |
| GAAGGGAAATTTGAGATCTT+TGG | 0.300695 | 7.3:+77713375 | MS.gene93616:CDS |
| AGTGAGAGAGAAGGTTGAAT+TGG | 0.360017 | 7.3:+77713326 | MS.gene93616:CDS |
| AATCAAACCGTGATTTCAAT+TGG | 0.361716 | 7.3:-77713498 | None:intergenic |
| GATACCTGGAACCACCAAAA+TGG | 0.362093 | 7.3:+77714999 | MS.gene93616:CDS |
| TCCAATAACAGCTGTGCAAT+TGG | 0.363190 | 7.3:+77714016 | MS.gene93616:CDS |
| TTTCTTAGGGAACTTGGTAT+TGG | 0.374176 | 7.3:+77714343 | MS.gene93616:intron |
| GCTGTCAAGGGTGGTAGATA+TGG | 0.391549 | 7.3:+77715102 | MS.gene93616:CDS |
| ATTTGAGAGGGTTAATGAAC+TGG | 0.426318 | 7.3:+77714903 | MS.gene93616:CDS |
| CTGTCAAGGGTGGTAGATAT+GGG | 0.429429 | 7.3:+77715103 | MS.gene93616:CDS |
| TAAACTAACACAAGAAGAAA+TGG | 0.436815 | 7.3:+77715056 | MS.gene93616:CDS |
| AGAGCAATCATGTCAGGTTC+AGG | 0.437605 | 7.3:-77713025 | None:intergenic |
| CTTGGTTGCATGAGCATGTC+AGG | 0.442441 | 7.3:+77712983 | MS.gene93616:CDS |
| GCAGTAGGAAGAATGAAGTT+AGG | 0.442452 | 7.3:+77712929 | MS.gene93616:CDS |
| AAAAGTGACACCAGATTGTA+TGG | 0.442868 | 7.3:-77713059 | None:intergenic |
| ATATAGTCTGATTCTGCTGC+AGG | 0.450000 | 7.3:-77714882 | None:intergenic |
| CAAGCTTCTCTCACGTAAGC+TGG | 0.451335 | 7.3:-77713402 | None:intergenic |
| AACGATGTGTGCCCGATACC+TGG | 0.466183 | 7.3:+77714985 | MS.gene93616:CDS |
| CACACCAACGAACTCCTCCT+TGG | 0.466667 | 7.3:+77713109 | MS.gene93616:CDS |
| ATTGTTGCATATAGTCCTCT+TGG | 0.471189 | 7.3:+77714367 | MS.gene93616:CDS |
| ATTCATCATGCCATACAATC+TGG | 0.472363 | 7.3:+77713049 | MS.gene93616:CDS |
| AATTGTGGACAGGCTTTAAG+AGG | 0.474129 | 7.3:+77713300 | MS.gene93616:intron |
| TTTGGAGCCAAATATATTGA+AGG | 0.475808 | 7.3:+77713357 | MS.gene93616:CDS |
| TAATGAACTGGCTACAAAGA+AGG | 0.479658 | 7.3:+77714915 | MS.gene93616:CDS |
| AAGAGGAGGAGTGAGAGAGA+AGG | 0.485439 | 7.3:+77713317 | MS.gene93616:CDS |
| TCGGGCACACATCGTTTCCT+TGG | 0.496156 | 7.3:-77714978 | None:intergenic |
| CGTCTCAGCTTGCATTGGCA+TGG | 0.497948 | 7.3:+77714947 | MS.gene93616:CDS |
| ATGAGCATGTCAGGTGTCTA+TGG | 0.498898 | 7.3:+77712992 | MS.gene93616:CDS |
| TGCAATTGGAGTGGTCACTA+TGG | 0.500317 | 7.3:+77714030 | MS.gene93616:CDS |
| ATCATGTCAGGTTCAGGCTT+AGG | 0.505151 | 7.3:-77713019 | None:intergenic |
| GAAGTGTCCTTGCAAGGACT+TGG | 0.508887 | 7.3:+77712965 | MS.gene93616:CDS |
| GTCTTTAGCAGATGCTGTCA+AGG | 0.511022 | 7.3:+77715089 | MS.gene93616:CDS |
| TCGTCTTCCAATTGAAATCA+CGG | 0.530494 | 7.3:+77713491 | MS.gene93616:CDS |
| GAAGTTAGGATCACAAGGAA+TGG | 0.532873 | 7.3:+77712943 | MS.gene93616:CDS |
| TCTTCTGATTGTTGAAGCTG+AGG | 0.532875 | 7.3:-77713979 | None:intergenic |
| ACTAAATCAAACCTGCAAGT+TGG | 0.537019 | 7.3:-77714080 | None:intergenic |
| AGAAGAACAATGACAGCAGT+AGG | 0.537429 | 7.3:+77712914 | None:intergenic |
| TACTCCGTCTCAGCTTGCAT+TGG | 0.539631 | 7.3:+77714942 | MS.gene93616:CDS |
| GGAGGAGTTCGTTGGTGTGA+GGG | 0.544146 | 7.3:-77713105 | None:intergenic |
| GAGAACTTTAATCAAAACAT+TGG | 0.545978 | 7.3:+77715021 | MS.gene93616:CDS |
| AATGAACTGGCTACAAAGAA+GGG | 0.546567 | 7.3:+77714916 | MS.gene93616:CDS |
| TGAATGAGAGCAATCATGTC+AGG | 0.550550 | 7.3:-77713031 | None:intergenic |
| CATGCCAATGCAAGCTGAGA+CGG | 0.554180 | 7.3:-77714946 | None:intergenic |
| ATGTCAGGTTCAGGCTTAGG+AGG | 0.557823 | 7.3:-77713016 | None:intergenic |
| CTTTCCAAGGAGGAGTTCGT+TGG | 0.559199 | 7.3:-77713113 | None:intergenic |
| AACAAAGGATGACTACCGCC+AGG | 0.563602 | 7.3:+77714432 | MS.gene93616:CDS |
| TTGGAGCCAAATATATTGAA+GGG | 0.564347 | 7.3:+77713358 | MS.gene93616:CDS |
| AGGAGGAGTTCGTTGGTGTG+AGG | 0.567455 | 7.3:-77713106 | None:intergenic |
| GCATATAGTCCTCTTGGACG+AGG | 0.577164 | 7.3:+77714373 | MS.gene93616:CDS |
| AGAATCAGACTATATTTGAG+AGG | 0.585843 | 7.3:+77714890 | MS.gene93616:CDS |
| AGAAAGTAAGAACCTTTCCA+AGG | 0.586920 | 7.3:-77713126 | None:intergenic |
| CATGCAACCAAGTCCTTGCA+AGG | 0.590784 | 7.3:-77712972 | None:intergenic |
| GGAATGGAAGTGTCCTTGCA+AGG | 0.592055 | 7.3:+77712959 | MS.gene93616:CDS |
| GAATCAGACTATATTTGAGA+GGG | 0.604511 | 7.3:+77714891 | MS.gene93616:CDS |
| GAAAAGAATCCTCGTCCAAG+AGG | 0.611487 | 7.3:-77714382 | None:intergenic |
| CAACGAACTCCTCCTTGGAA+AGG | 0.612819 | 7.3:+77713114 | MS.gene93616:CDS |
| ACTATGGTCAAGAGATGTTG+AGG | 0.614034 | 7.3:+77714046 | MS.gene93616:CDS |
| TGTGGACAGGCTTTAAGAGG+AGG | 0.614236 | 7.3:+77713303 | MS.gene93616:intron |
| ATGGGGATGAAATAAGTACA+TGG | 0.614624 | 7.3:+77715121 | MS.gene93616:CDS |
| TCTTTAGCAGATGCTGTCAA+GGG | 0.626442 | 7.3:+77715090 | MS.gene93616:CDS |
| GATTGTTGAGAACTTAACAA+AGG | 0.637901 | 7.3:+77714417 | MS.gene93616:CDS |
| AGAATGAAGTTAGGATCACA+AGG | 0.639560 | 7.3:+77712938 | MS.gene93616:CDS |
| TTAGCAGATGCTGTCAAGGG+TGG | 0.645754 | 7.3:+77715093 | MS.gene93616:CDS |
| GCTTTCCAAGAAGAGAGTGG+TGG | 0.651055 | 7.3:-77715159 | None:intergenic |
| TAACAGCTGTGCAATTGGAG+TGG | 0.661184 | 7.3:+77714021 | MS.gene93616:CDS |
| AAGTAAGAACCTTTCCAAGG+AGG | 0.662248 | 7.3:-77713123 | None:intergenic |
| ACAGCTTTCCAAGAAGAGAG+TGG | 0.666396 | 7.3:-77715162 | None:intergenic |
| GTGAGGGCCATAGATGTCAG+AGG | 0.676572 | 7.3:-77713089 | None:intergenic |
| TTGGCATGGCTTCATCACCA+AGG | 0.680145 | 7.3:+77714961 | MS.gene93616:CDS |
| TGTCAAGGGTGGTAGATATG+GGG | 0.702694 | 7.3:+77715104 | MS.gene93616:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTAAAATAGAACATTTT+GGG | - | chr7.3:77714745-77714764 | None:intergenic | 10.0% |
| !!! | TTATGATTTTTTTTTTCTTA+GGG | + | chr7.3:77714330-77714349 | MS.gene93616:intron | 10.0% |
| !! | ACAAATAGAAGATTATATTT+AGG | - | chr7.3:77714824-77714843 | None:intergenic | 15.0% |
| !! | ACAATTGTAATTTAAGAAAA+TGG | + | chr7.3:77714187-77714206 | MS.gene93616:intron | 15.0% |
| !! | TATAAAAATGTGTTTCAATA+TGG | - | chr7.3:77713606-77713625 | None:intergenic | 15.0% |
| !! | TATTACCTAAAATTAATGTT+TGG | + | chr7.3:77713628-77713647 | MS.gene93616:intron | 15.0% |
| !!! | CTAATTAAAATAGAACATTT+TGG | - | chr7.3:77714746-77714765 | None:intergenic | 15.0% |
| !!! | GTTATGATTTTTTTTTTCTT+AGG | + | chr7.3:77714329-77714348 | MS.gene93616:intron | 15.0% |
| !!! | TGGATAAATTATTTTCAAAA+AGG | + | chr7.3:77713648-77713667 | MS.gene93616:intron | 15.0% |
| !!! | TTTATCCAAACATTAATTTT+AGG | - | chr7.3:77713636-77713655 | None:intergenic | 15.0% |
| !! | AAAAAAAATCATAACTCATG+AGG | - | chr7.3:77714324-77714343 | None:intergenic | 20.0% |
| !! | AAATTTCCCTTCAATATATT+TGG | - | chr7.3:77713367-77713386 | None:intergenic | 20.0% |
| !! | AGATATTTAATAATTGATGC+AGG | - | chr7.3:77714770-77714789 | None:intergenic | 20.0% |
| !! | TTAAAATTGCAATGATATGA+AGG | + | chr7.3:77714150-77714169 | MS.gene93616:intron | 20.0% |
| !!! | AAAATTCTTTGATTCCATTT+TGG | + | chr7.3:77713527-77713546 | MS.gene93616:intron | 20.0% |
| ! | AACTTTCTCTCTTAATCTAA+CGG | - | chr7.3:77713708-77713727 | None:intergenic | 25.0% |
| ! | CTTAAAAAACTAGTTGAAGA+GGG | + | chr7.3:77713927-77713946 | MS.gene93616:CDS | 25.0% |
| ! | GAGAACTTTAATCAAAACAT+TGG | + | chr7.3:77715021-77715040 | MS.gene93616:CDS | 25.0% |
| ! | GAGGGAAAAATAAAATACAT+TGG | + | chr7.3:77713945-77713964 | MS.gene93616:CDS | 25.0% |
| ! | TAAACTAACACAAGAAGAAA+TGG | + | chr7.3:77715056-77715075 | MS.gene93616:CDS | 25.0% |
| ! | TATTAATGATGTCTATGTGT+CGG | - | chr7.3:77714578-77714597 | None:intergenic | 25.0% |
| ! | TGTTATATAGATTCTAACCT+TGG | + | chr7.3:77714716-77714735 | MS.gene93616:intron | 25.0% |
| ! | TTGAATGTACTTACAAGTAT+TGG | + | chr7.3:77714216-77714235 | MS.gene93616:intron | 25.0% |
| !! | TTGATTAAAGTTCTCCATTT+TGG | - | chr7.3:77715016-77715035 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTCTTAGGGAACT+TGG | + | chr7.3:77714337-77714356 | MS.gene93616:intron | 25.0% |
| AACTGACAAGTATGAAATAC+TGG | + | chr7.3:77714520-77714539 | MS.gene93616:intron | 30.0% | |
| AAGAAATAATTCCAACTTGC+AGG | + | chr7.3:77714069-77714088 | MS.gene93616:CDS | 30.0% | |
| AATCAAACCGTGATTTCAAT+TGG | - | chr7.3:77713501-77713520 | None:intergenic | 30.0% | |
| AATGTGTATGTGTGAAATTG+TGG | + | chr7.3:77713285-77713304 | MS.gene93616:intron | 30.0% | |
| AGAATCAGACTATATTTGAG+AGG | + | chr7.3:77714890-77714909 | MS.gene93616:CDS | 30.0% | |
| CCCAATCTTACATAGTAAAA+GGG | - | chr7.3:77713904-77713923 | None:intergenic | 30.0% | |
| CTCAATTTAAGCTACCAAAA+TGG | - | chr7.3:77713544-77713563 | None:intergenic | 30.0% | |
| GAATCAGACTATATTTGAGA+GGG | + | chr7.3:77714891-77714910 | MS.gene93616:CDS | 30.0% | |
| GATTGTTGAGAACTTAACAA+AGG | + | chr7.3:77714417-77714436 | MS.gene93616:CDS | 30.0% | |
| GCTTAAAAAACTAGTTGAAG+AGG | + | chr7.3:77713926-77713945 | MS.gene93616:CDS | 30.0% | |
| TTGGAGCCAAATATATTGAA+GGG | + | chr7.3:77713358-77713377 | MS.gene93616:CDS | 30.0% | |
| ! | ATTAAAGTTCTCCATTTTGG+TGG | - | chr7.3:77715013-77715032 | None:intergenic | 30.0% |
| ! | CCCTTTTACTATGTAAGATT+GGG | + | chr7.3:77713901-77713920 | MS.gene93616:intron | 30.0% |
| ! | CCTTTTACTATGTAAGATTG+GGG | + | chr7.3:77713902-77713921 | MS.gene93616:intron | 30.0% |
| ! | TCCCTTTTACTATGTAAGAT+TGG | + | chr7.3:77713900-77713919 | MS.gene93616:intron | 30.0% |
| ! | TTTGGAGCCAAATATATTGA+AGG | + | chr7.3:77713357-77713376 | MS.gene93616:CDS | 30.0% |
| AAAAGTGACACCAGATTGTA+TGG | - | chr7.3:77713062-77713081 | None:intergenic | 35.0% | |
| AAACACACGTCTTTAATCGT+TGG | + | chr7.3:77714275-77714294 | MS.gene93616:intron | 35.0% | |
| AACGATTAAAGACGTGTGTT+TGG | - | chr7.3:77714276-77714295 | None:intergenic | 35.0% | |
| AATGAACTGGCTACAAAGAA+GGG | + | chr7.3:77714916-77714935 | MS.gene93616:CDS | 35.0% | |
| ACTAAATCAAACCTGCAAGT+TGG | - | chr7.3:77714083-77714102 | None:intergenic | 35.0% | |
| AGAAAGTAAGAACCTTTCCA+AGG | - | chr7.3:77713129-77713148 | None:intergenic | 35.0% | |
| AGAATGAAGTTAGGATCACA+AGG | + | chr7.3:77712938-77712957 | MS.gene93616:CDS | 35.0% | |
| ATGAAATACTGGCACAAACA+TGG | + | chr7.3:77714531-77714550 | MS.gene93616:intron | 35.0% | |
| ATGGGGATGAAATAAGTACA+TGG | + | chr7.3:77715121-77715140 | MS.gene93616:CDS | 35.0% | |
| ATTCATCATGCCATACAATC+TGG | + | chr7.3:77713049-77713068 | MS.gene93616:CDS | 35.0% | |
| ATTGTTGCATATAGTCCTCT+TGG | + | chr7.3:77714367-77714386 | MS.gene93616:CDS | 35.0% | |
| ATTTGAGAGGGTTAATGAAC+TGG | + | chr7.3:77714903-77714922 | MS.gene93616:CDS | 35.0% | |
| CCCCAATCTTACATAGTAAA+AGG | - | chr7.3:77713905-77713924 | None:intergenic | 35.0% | |
| CTGAAGCAAACATATGCTTA+TGG | - | chr7.3:77713569-77713588 | None:intergenic | 35.0% | |
| GTTGAATTGGCTACAAAGTT+TGG | + | chr7.3:77713339-77713358 | MS.gene93616:CDS | 35.0% | |
| TAATGAACTGGCTACAAAGA+AGG | + | chr7.3:77714915-77714934 | MS.gene93616:CDS | 35.0% | |
| TCACATGTTCAGTATTGTGT+TGG | + | chr7.3:77714638-77714657 | MS.gene93616:intron | 35.0% | |
| TCGTCTTCCAATTGAAATCA+CGG | + | chr7.3:77713491-77713510 | MS.gene93616:CDS | 35.0% | |
| TGTTATCTAGCATTTCTCTC+TGG | + | chr7.3:77714120-77714139 | MS.gene93616:intron | 35.0% | |
| TTTCATACTTGTCAGTTGAG+TGG | - | chr7.3:77714517-77714536 | None:intergenic | 35.0% | |
| TTTCTTAGGGAACTTGGTAT+TGG | + | chr7.3:77714343-77714362 | MS.gene93616:intron | 35.0% | |
| ! | ACACGAAACCTTCAAGTTTA+AGG | - | chr7.3:77714699-77714718 | None:intergenic | 35.0% |
| ! | GAAGGGAAATTTGAGATCTT+TGG | + | chr7.3:77713375-77713394 | MS.gene93616:CDS | 35.0% |
| !!! | AGGTTTTCAGGTTGAAATCT+AGG | - | chr7.3:77714865-77714884 | None:intergenic | 35.0% |
| AAGTAAGAACCTTTCCAAGG+AGG | - | chr7.3:77713126-77713145 | None:intergenic | 40.0% | |
| ACTATGGTCAAGAGATGTTG+AGG | + | chr7.3:77714046-77714065 | MS.gene93616:CDS | 40.0% | |
| AGTGAGAGAGAAGGTTGAAT+TGG | + | chr7.3:77713326-77713345 | MS.gene93616:CDS | 40.0% | |
| ATATAGTCTGATTCTGCTGC+AGG | - | chr7.3:77714885-77714904 | None:intergenic | 40.0% | |
| CGAACACACCTTAAACTTGA+AGG | + | chr7.3:77714688-77714707 | MS.gene93616:intron | 40.0% | |
| CTTGATACCTCTGACATCTA+TGG | + | chr7.3:77713082-77713101 | MS.gene93616:CDS | 40.0% | |
| CTTTCTCAATCTACGATCAG+CGG | + | chr7.3:77713732-77713751 | MS.gene93616:intron | 40.0% | |
| GAAGTTAGGATCACAAGGAA+TGG | + | chr7.3:77712943-77712962 | MS.gene93616:CDS | 40.0% | |
| GCAGTAGGAAGAATGAAGTT+AGG | + | chr7.3:77712929-77712948 | MS.gene93616:CDS | 40.0% | |
| GTATGTGTGAAATTGTGGAC+AGG | + | chr7.3:77713290-77713309 | MS.gene93616:intron | 40.0% | |
| TCCAATAACAGCTGTGCAAT+TGG | + | chr7.3:77714016-77714035 | MS.gene93616:CDS | 40.0% | |
| TCCAATTGCACAGCTGTTAT+TGG | - | chr7.3:77714020-77714039 | None:intergenic | 40.0% | |
| TCTTCTGATTGTTGAAGCTG+AGG | - | chr7.3:77713982-77714001 | None:intergenic | 40.0% | |
| TCTTTAGCAGATGCTGTCAA+GGG | + | chr7.3:77715090-77715109 | MS.gene93616:CDS | 40.0% | |
| TGAATGAGAGCAATCATGTC+AGG | - | chr7.3:77713034-77713053 | None:intergenic | 40.0% | |
| !! | AATTGTGGACAGGCTTTAAG+AGG | + | chr7.3:77713300-77713319 | MS.gene93616:intron | 40.0% |
| !! | ATTTTGGTGGTTCCAGGTAT+CGG | - | chr7.3:77715000-77715019 | None:intergenic | 40.0% |
| !!! | TAGAACATTTTGGGATGCCA+AGG | - | chr7.3:77714736-77714755 | None:intergenic | 40.0% |
| AAGTCACTTAGCTCGACGTT+AGG | - | chr7.3:77713249-77713268 | None:intergenic | 45.0% | |
| ACAGCTTTCCAAGAAGAGAG+TGG | - | chr7.3:77715165-77715184 | None:intergenic | 45.0% | |
| AGAGCAATCATGTCAGGTTC+AGG | - | chr7.3:77713028-77713047 | None:intergenic | 45.0% | |
| ATACTCCACCACTCTCTTCT+TGG | + | chr7.3:77715154-77715173 | MS.gene93616:CDS | 45.0% | |
| ATCATGTCAGGTTCAGGCTT+AGG | - | chr7.3:77713022-77713041 | None:intergenic | 45.0% | |
| ATGAGCATGTCAGGTGTCTA+TGG | + | chr7.3:77712992-77713011 | MS.gene93616:CDS | 45.0% | |
| CTGTCAAGGGTGGTAGATAT+GGG | + | chr7.3:77715103-77715122 | MS.gene93616:CDS | 45.0% | |
| GAAAAGAATCCTCGTCCAAG+AGG | - | chr7.3:77714385-77714404 | None:intergenic | 45.0% | |
| GATACCTGGAACCACCAAAA+TGG | + | chr7.3:77714999-77715018 | MS.gene93616:CDS | 45.0% | |
| GTCTTTAGCAGATGCTGTCA+AGG | + | chr7.3:77715089-77715108 | MS.gene93616:CDS | 45.0% | |
| TAACAGCTGTGCAATTGGAG+TGG | + | chr7.3:77714021-77714040 | MS.gene93616:CDS | 45.0% | |
| TGCAATTGGAGTGGTCACTA+TGG | + | chr7.3:77714030-77714049 | MS.gene93616:CDS | 45.0% | |
| TGTCAAGGGTGGTAGATATG+GGG | + | chr7.3:77715104-77715123 | MS.gene93616:CDS | 45.0% | |
| ! | AGCATGCTTTTCGACAAACC+TGG | - | chr7.3:77714453-77714472 | None:intergenic | 45.0% |
| ! | ATGCTTTTCGACAAACCTGG+CGG | - | chr7.3:77714450-77714469 | None:intergenic | 45.0% |
| ! | GGACGAGGATTCTTTTCATC+AGG | + | chr7.3:77714388-77714407 | MS.gene93616:CDS | 45.0% |
| ! | TGATTCTGCTGCAGGTTTTC+AGG | - | chr7.3:77714877-77714896 | None:intergenic | 45.0% |
| !! | CTTTAATCGTTGGTGCTGCA+TGG | + | chr7.3:77714285-77714304 | MS.gene93616:intron | 45.0% |
| !! | GTTTGGTGTCAAACACGTGT+TGG | - | chr7.3:77714259-77714278 | None:intergenic | 45.0% |
| !! | TTCTCCATTTTGGTGGTTCC+AGG | - | chr7.3:77715006-77715025 | None:intergenic | 45.0% |
| !! | TTTTGGTGGTTCCAGGTATC+GGG | - | chr7.3:77714999-77715018 | None:intergenic | 45.0% |
| AACAAAGGATGACTACCGCC+AGG | + | chr7.3:77714432-77714451 | MS.gene93616:CDS | 50.0% | |
| AAGAGGAGGAGTGAGAGAGA+AGG | + | chr7.3:77713317-77713336 | MS.gene93616:CDS | 50.0% | |
| ATGTCAGGTTCAGGCTTAGG+AGG | - | chr7.3:77713019-77713038 | None:intergenic | 50.0% | |
| CAACGAACTCCTCCTTGGAA+AGG | + | chr7.3:77713114-77713133 | MS.gene93616:CDS | 50.0% | |
| CAAGCTTCTCTCACGTAAGC+TGG | - | chr7.3:77713405-77713424 | None:intergenic | 50.0% | |
| CATGCAACCAAGTCCTTGCA+AGG | - | chr7.3:77712975-77712994 | None:intergenic | 50.0% | |
| CATGCCAATGCAAGCTGAGA+CGG | - | chr7.3:77714949-77714968 | None:intergenic | 50.0% | |
| CTTGGTTGCATGAGCATGTC+AGG | + | chr7.3:77712983-77713002 | MS.gene93616:CDS | 50.0% | |
| CTTTCCAAGGAGGAGTTCGT+TGG | - | chr7.3:77713116-77713135 | None:intergenic | 50.0% | |
| GCATATAGTCCTCTTGGACG+AGG | + | chr7.3:77714373-77714392 | MS.gene93616:CDS | 50.0% | |
| GCTGTCAAGGGTGGTAGATA+TGG | + | chr7.3:77715102-77715121 | MS.gene93616:CDS | 50.0% | |
| GCTTTCCAAGAAGAGAGTGG+TGG | - | chr7.3:77715162-77715181 | None:intergenic | 50.0% | |
| GTCGGTGACACTATCATGTC+AGG | - | chr7.3:77714560-77714579 | None:intergenic | 50.0% | |
| TACTCCGTCTCAGCTTGCAT+TGG | + | chr7.3:77714942-77714961 | MS.gene93616:CDS | 50.0% | |
| TCAATCTACGATCAGCGGCA+TGG | + | chr7.3:77713737-77713756 | MS.gene93616:intron | 50.0% | |
| TTAGCAGATGCTGTCAAGGG+TGG | + | chr7.3:77715093-77715112 | MS.gene93616:CDS | 50.0% | |
| TTGGCATGGCTTCATCACCA+AGG | + | chr7.3:77714961-77714980 | MS.gene93616:CDS | 50.0% | |
| ! | GAAGTGTCCTTGCAAGGACT+TGG | + | chr7.3:77712965-77712984 | MS.gene93616:CDS | 50.0% |
| !! | GGAATGGAAGTGTCCTTGCA+AGG | + | chr7.3:77712959-77712978 | MS.gene93616:CDS | 50.0% |
| !! | TGTGGACAGGCTTTAAGAGG+AGG | + | chr7.3:77713303-77713322 | MS.gene93616:intron | 50.0% |
| AACGATGTGTGCCCGATACC+TGG | + | chr7.3:77714985-77715004 | MS.gene93616:CDS | 55.0% | |
| AGGAGGAGTTCGTTGGTGTG+AGG | - | chr7.3:77713109-77713128 | None:intergenic | 55.0% | |
| CACACCAACGAACTCCTCCT+TGG | + | chr7.3:77713109-77713128 | MS.gene93616:CDS | 55.0% | |
| GGAGGAGTTCGTTGGTGTGA+GGG | - | chr7.3:77713108-77713127 | None:intergenic | 55.0% | |
| GTGAGGGCCATAGATGTCAG+AGG | - | chr7.3:77713092-77713111 | None:intergenic | 55.0% | |
| TCGGGCACACATCGTTTCCT+TGG | - | chr7.3:77714981-77715000 | None:intergenic | 55.0% | |
| ! | CGTCTCAGCTTGCATTGGCA+TGG | + | chr7.3:77714947-77714966 | MS.gene93616:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 77712923 | 77715188 | 77712923 | ID=MS.gene93616 |
| chr7.3 | mRNA | 77712923 | 77715188 | 77712923 | ID=MS.gene93616.t1;Parent=MS.gene93616 |
| chr7.3 | exon | 77712923 | 77713135 | 77712923 | ID=MS.gene93616.t1.exon1;Parent=MS.gene93616.t1 |
| chr7.3 | CDS | 77712923 | 77713135 | 77712923 | ID=cds.MS.gene93616.t1;Parent=MS.gene93616.t1 |
| chr7.3 | exon | 77713312 | 77713512 | 77713312 | ID=MS.gene93616.t1.exon2;Parent=MS.gene93616.t1 |
| chr7.3 | CDS | 77713312 | 77713512 | 77713312 | ID=cds.MS.gene93616.t1;Parent=MS.gene93616.t1 |
| chr7.3 | exon | 77713918 | 77714090 | 77713918 | ID=MS.gene93616.t1.exon3;Parent=MS.gene93616.t1 |
| chr7.3 | CDS | 77713918 | 77714090 | 77713918 | ID=cds.MS.gene93616.t1;Parent=MS.gene93616.t1 |
| chr7.3 | exon | 77714351 | 77714453 | 77714351 | ID=MS.gene93616.t1.exon4;Parent=MS.gene93616.t1 |
| chr7.3 | CDS | 77714351 | 77714453 | 77714351 | ID=cds.MS.gene93616.t1;Parent=MS.gene93616.t1 |
| chr7.3 | exon | 77714856 | 77715188 | 77714856 | ID=MS.gene93616.t1.exon5;Parent=MS.gene93616.t1 |
| chr7.3 | CDS | 77714856 | 77715188 | 77714856 | ID=cds.MS.gene93616.t1;Parent=MS.gene93616.t1 |
| Gene Sequence |
| Protein sequence |
