Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23855.t1 | XP_003621684.1 | 91.1 | 338 | 30 | 0 | 1 | 338 | 1 | 338 | 8.70E-178 | 632.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23855.t1 | Q7XT99 | 76.5 | 340 | 75 | 3 | 4 | 338 | 11 | 350 | 2.1e-151 | 536.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23855.t1 | A2Q5A8 | 91.1 | 338 | 30 | 0 | 1 | 338 | 1 | 338 | 6.3e-178 | 632.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23855.t1 | MTR_7g021680 | 90.855 | 339 | 31 | 0 | 1 | 339 | 1 | 339 | 0.0 | 639 |
| MS.gene23855.t1 | MTR_7g021820 | 90.855 | 339 | 31 | 0 | 1 | 339 | 1 | 339 | 0.0 | 639 |
| MS.gene23855.t1 | MTR_7g021850 | 86.471 | 340 | 44 | 2 | 1 | 339 | 1 | 339 | 0.0 | 612 |
| MS.gene23855.t1 | MTR_7g114980 | 57.864 | 337 | 131 | 7 | 6 | 332 | 13 | 348 | 5.09e-136 | 390 |
| MS.gene23855.t1 | MTR_7g114990 | 56.325 | 332 | 136 | 6 | 7 | 332 | 16 | 344 | 6.56e-135 | 388 |
| MS.gene23855.t1 | MTR_1g102750 | 56.380 | 337 | 139 | 6 | 3 | 332 | 4 | 339 | 6.71e-131 | 377 |
| MS.gene23855.t1 | MTR_7g114970 | 54.839 | 341 | 140 | 6 | 4 | 334 | 7 | 343 | 3.91e-128 | 370 |
| MS.gene23855.t1 | MTR_7g115010 | 52.994 | 334 | 133 | 7 | 7 | 332 | 12 | 329 | 1.27e-121 | 353 |
| MS.gene23855.t1 | MTR_7g114980 | 60.498 | 281 | 104 | 5 | 6 | 280 | 13 | 292 | 1.43e-117 | 342 |
| MS.gene23855.t1 | MTR_7g114970 | 58.929 | 280 | 111 | 4 | 4 | 280 | 7 | 285 | 4.77e-116 | 337 |
| MS.gene23855.t1 | MTR_1g102750 | 59.011 | 283 | 112 | 4 | 3 | 282 | 4 | 285 | 1.29e-115 | 337 |
| MS.gene23855.t1 | MTR_7g114970 | 58.781 | 279 | 111 | 4 | 4 | 279 | 7 | 284 | 5.22e-115 | 335 |
| MS.gene23855.t1 | MTR_7g021825 | 94.521 | 146 | 8 | 0 | 157 | 302 | 15 | 160 | 1.21e-100 | 293 |
| MS.gene23855.t1 | MTR_7g114970 | 57.613 | 243 | 91 | 4 | 97 | 331 | 8 | 246 | 1.36e-93 | 279 |
| MS.gene23855.t1 | MTR_7g114970 | 62.371 | 194 | 71 | 2 | 6 | 197 | 9 | 202 | 1.59e-83 | 251 |
| MS.gene23855.t1 | MTR_7g021670 | 85.385 | 130 | 19 | 0 | 1 | 130 | 1 | 130 | 1.15e-76 | 236 |
| MS.gene23855.t1 | MTR_7g021670 | 95.495 | 111 | 5 | 0 | 230 | 340 | 144 | 254 | 7.83e-72 | 224 |
| MS.gene23855.t1 | MTR_7g114970 | 56.436 | 202 | 76 | 4 | 138 | 331 | 1 | 198 | 1.29e-72 | 224 |
| MS.gene23855.t1 | MTR_7g021685 | 88.406 | 69 | 8 | 0 | 1 | 69 | 1 | 69 | 1.47e-39 | 136 |
| MS.gene23855.t1 | MTR_1g102740 | 50.476 | 105 | 48 | 1 | 232 | 332 | 3 | 107 | 3.59e-32 | 116 |
| MS.gene23855.t1 | MTR_3g449790 | 30.702 | 342 | 182 | 10 | 6 | 314 | 37 | 356 | 3.42e-31 | 121 |
| MS.gene23855.t1 | MTR_3g449790 | 30.117 | 342 | 178 | 10 | 6 | 314 | 37 | 350 | 1.03e-30 | 119 |
| MS.gene23855.t1 | MTR_7g067855 | 35.862 | 145 | 54 | 4 | 227 | 332 | 10 | 154 | 5.55e-24 | 96.7 |
| MS.gene23855.t1 | MTR_3g092140 | 28.814 | 295 | 172 | 11 | 38 | 310 | 71 | 349 | 9.49e-24 | 102 |
| MS.gene23855.t1 | MTR_1g042730 | 27.221 | 349 | 201 | 13 | 8 | 309 | 65 | 407 | 8.20e-19 | 87.0 |
| MS.gene23855.t1 | MTR_1g047250 | 26.154 | 325 | 208 | 11 | 9 | 312 | 6 | 319 | 1.71e-18 | 85.1 |
| MS.gene23855.t1 | MTR_4g092750 | 29.630 | 216 | 137 | 6 | 8 | 213 | 5 | 215 | 2.41e-17 | 81.6 |
| MS.gene23855.t1 | MTR_4g092750 | 29.630 | 216 | 137 | 6 | 8 | 213 | 5 | 215 | 2.76e-17 | 81.6 |
| MS.gene23855.t1 | MTR_4g092750 | 29.630 | 216 | 137 | 6 | 8 | 213 | 5 | 215 | 4.83e-17 | 80.5 |
| MS.gene23855.t1 | MTR_8g088160 | 25.830 | 271 | 151 | 10 | 14 | 238 | 49 | 315 | 7.63e-14 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23855.t1 | AT1G60730 | 76.401 | 339 | 77 | 2 | 4 | 339 | 7 | 345 | 0.0 | 536 |
| MS.gene23855.t1 | AT1G60710 | 75.811 | 339 | 79 | 2 | 4 | 339 | 7 | 345 | 0.0 | 533 |
| MS.gene23855.t1 | AT1G60680 | 75.000 | 340 | 81 | 3 | 3 | 338 | 6 | 345 | 0.0 | 526 |
| MS.gene23855.t1 | AT1G60690 | 73.451 | 339 | 87 | 2 | 3 | 338 | 6 | 344 | 0.0 | 525 |
| MS.gene23855.t1 | AT1G60730 | 72.145 | 359 | 77 | 3 | 4 | 339 | 7 | 365 | 0.0 | 523 |
| MS.gene23855.t1 | AT1G10810 | 71.006 | 338 | 95 | 2 | 4 | 338 | 7 | 344 | 3.44e-178 | 497 |
| MS.gene23855.t1 | AT1G60750 | 70.588 | 340 | 79 | 4 | 3 | 338 | 7 | 329 | 2.97e-173 | 484 |
| MS.gene23855.t1 | AT1G10810 | 70.480 | 271 | 77 | 2 | 71 | 338 | 22 | 292 | 5.35e-139 | 396 |
| MS.gene23855.t1 | AT1G60680 | 77.729 | 229 | 49 | 2 | 3 | 229 | 6 | 234 | 1.42e-127 | 365 |
| MS.gene23855.t1 | AT1G10810 | 73.276 | 232 | 61 | 1 | 4 | 234 | 7 | 238 | 4.68e-121 | 349 |
| MS.gene23855.t1 | AT1G60730 | 73.381 | 139 | 36 | 1 | 4 | 141 | 7 | 145 | 2.76e-68 | 212 |
| MS.gene23855.t1 | AT1G06690 | 29.217 | 332 | 200 | 12 | 6 | 314 | 48 | 367 | 2.78e-27 | 110 |
| MS.gene23855.t1 | AT5G53580 | 31.010 | 287 | 160 | 10 | 46 | 310 | 80 | 350 | 1.84e-26 | 108 |
| MS.gene23855.t1 | AT4G33670 | 25.610 | 328 | 210 | 9 | 1 | 314 | 1 | 308 | 1.37e-22 | 96.7 |
| MS.gene23855.t1 | AT1G04690 | 26.498 | 317 | 183 | 11 | 9 | 296 | 6 | 301 | 2.84e-20 | 90.5 |
| MS.gene23855.t1 | AT1G04420 | 25.905 | 359 | 213 | 16 | 8 | 319 | 60 | 412 | 4.67e-18 | 85.1 |
Find 80 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTAATTTGGCTACAAAATT+TGG | 0.121716 | 7.1:+76697620 | MS.gene23855:CDS |
| TTGATTAAAGTTCTCAATTT+TGG | 0.142629 | 7.1:-76698934 | None:intergenic |
| TCCAACTGCACAGCTGTTAT+TGG | 0.217840 | 7.1:-76698119 | None:intergenic |
| AGTGAGAGAGAAAGTTAATT+TGG | 0.231011 | 7.1:+76697607 | MS.gene23855:CDS |
| CACACCAATGAACTTCTTCT+TGG | 0.235392 | 7.1:+76697426 | MS.gene23855:CDS |
| CTTGACACTTCTGACTTCTA+TGG | 0.238699 | 7.1:+76697399 | MS.gene23855:CDS |
| ATACTCCACCACTCTCTTCT+TGG | 0.280266 | 7.1:+76699075 | MS.gene23855:CDS |
| AAGAAATAATTCCAACTTGC+AGG | 0.330054 | 7.1:+76698171 | MS.gene23855:CDS |
| TGTGCTCTTCTGATTGTTGC+TGG | 0.355038 | 7.1:-76698086 | None:intergenic |
| TCTCTCAGGGAACTTGGTAT+TGG | 0.366025 | 7.1:+76698469 | MS.gene23855:intron |
| GAAACTAACACAAGAAGAAA+TGG | 0.366761 | 7.1:+76698977 | MS.gene23855:CDS |
| ATCATGTCAGGTTCAGGTTT+AGG | 0.367686 | 7.1:-76697336 | None:intergenic |
| AATCAAACCGTGACTTCAAT+TGG | 0.385343 | 7.1:-76697779 | None:intergenic |
| CTTTCCAAGAAGAAGTTCAT+TGG | 0.393549 | 7.1:-76697430 | None:intergenic |
| AGAGCAATCATGTCAGGTTC+AGG | 0.397066 | 7.1:-76697342 | None:intergenic |
| AATTGTGGAATAGGCTTTGA+AGG | 0.414034 | 7.1:+76697583 | MS.gene23855:intron |
| CAGGCAGCTGTCACATAACT+TGG | 0.425455 | 7.1:-76697683 | None:intergenic |
| AAAAGTGACACCAGATTGTA+TGG | 0.442868 | 7.1:-76697376 | None:intergenic |
| ATGAGTATGTCAGCTTTCTA+TGG | 0.444287 | 7.1:+76697309 | MS.gene23855:CDS |
| ATATAGTCTGATTCTGCTGC+AGG | 0.450000 | 7.1:-76698803 | None:intergenic |
| ATATTCTCTCTCAGGGAACT+TGG | 0.458016 | 7.1:+76698463 | MS.gene23855:intron |
| CATGCATCCAAGTCCTTGTA+AGG | 0.461315 | 7.1:-76697289 | None:intergenic |
| ATAGTTGCATATAGTCCTCT+TGG | 0.466082 | 7.1:+76698493 | MS.gene23855:CDS |
| AAAGTGGGAAGAATGAAGTT+AGG | 0.469687 | 7.1:+76697246 | MS.gene23855:CDS |
| CAATGAACTGGCCACAAAGA+AGG | 0.472154 | 7.1:+76698836 | MS.gene23855:CDS |
| TGGAGTACATCCCTTCTTTG+TGG | 0.473648 | 7.1:-76698847 | None:intergenic |
| ATCCATCATGCCATACAATC+TGG | 0.476965 | 7.1:+76697366 | MS.gene23855:CDS |
| CAATGAACTTCTTCTTGGAA+AGG | 0.477419 | 7.1:+76697431 | MS.gene23855:CDS |
| TCGGGCACACGTCGTTTCCT+TGG | 0.481328 | 7.1:-76698899 | None:intergenic |
| ATTTGACAAAGTCAATGAAC+TGG | 0.487530 | 7.1:+76698824 | MS.gene23855:CDS |
| CATCTCAGCTTGCATTGGCA+TGG | 0.489745 | 7.1:+76698868 | MS.gene23855:CDS |
| AAACTAACACAAGAAGAAAT+GGG | 0.490480 | 7.1:+76698978 | MS.gene23855:CDS |
| TCCAATAACAGCTGTGCAGT+TGG | 0.490955 | 7.1:+76698118 | MS.gene23855:CDS |
| GCTAAAGAAACTTGTTGAAG+AGG | 0.493371 | 7.1:+76698028 | MS.gene23855:CDS |
| GTTGCTTGACAACTTGCAAA+AGG | 0.500919 | 7.1:+76698543 | MS.gene23855:CDS |
| TCTTCTGATTGTTGCTGGTG+AGG | 0.501920 | 7.1:-76698081 | None:intergenic |
| TAAATATCACACCTGCAAGT+TGG | 0.505103 | 7.1:-76698182 | None:intergenic |
| GTCTTTAGCAGATGCTGTCA+AGG | 0.506077 | 7.1:+76699010 | MS.gene23855:CDS |
| AACGACGTGTGCCCGATACC+TGG | 0.512377 | 7.1:+76698906 | MS.gene23855:CDS |
| TACTCCATCTCAGCTTGCAT+TGG | 0.515172 | 7.1:+76698863 | MS.gene23855:CDS |
| GAAGTGTCCTTACAAGGACT+TGG | 0.517209 | 7.1:+76697282 | MS.gene23855:CDS |
| AATGAACTGGCCACAAAGAA+GGG | 0.518216 | 7.1:+76698837 | MS.gene23855:CDS |
| TGCAGTTGGAGTGGTCACTA+TGG | 0.523922 | 7.1:+76698132 | MS.gene23855:CDS |
| CATGCCAATGCAAGCTGAGA+TGG | 0.529498 | 7.1:-76698867 | None:intergenic |
| AGTGAAAGCAATGACAAAAG+TGG | 0.529529 | 7.1:+76697230 | None:intergenic |
| CTAAAGAAACTTGTTGAAGA+GGG | 0.535689 | 7.1:+76698029 | MS.gene23855:CDS |
| CACCAGATTGTATGGCATGA+TGG | 0.536537 | 7.1:-76697368 | None:intergenic |
| TCTCCTCAAGCTACCCTCAC+AGG | 0.537840 | 7.1:-76697702 | None:intergenic |
| TAGTTGCATATAGTCCTCTT+GGG | 0.540181 | 7.1:+76698494 | MS.gene23855:CDS |
| GCATATAGTCCTCTTGGGCG+AGG | 0.551187 | 7.1:+76698499 | MS.gene23855:CDS |
| TCGTCTTCCAATTGAAGTCA+CGG | 0.553776 | 7.1:+76697772 | MS.gene23855:CDS |
| GTGAAAGCAATGACAAAAGT+GGG | 0.554004 | 7.1:+76697231 | None:intergenic |
| GGGATGGAAGTGTCCTTACA+AGG | 0.559327 | 7.1:+76697276 | MS.gene23855:CDS |
| TGGATGAGAGCAATCATGTC+AGG | 0.561182 | 7.1:-76697348 | None:intergenic |
| GAAGTTAGGATCACAAGGGA+TGG | 0.564034 | 7.1:+76697260 | MS.gene23855:CDS |
| ACTTGCAAAAGGATGACTAC+AGG | 0.576791 | 7.1:+76698554 | MS.gene23855:CDS |
| ATGTCAGGTTCAGGTTTAGG+AGG | 0.578905 | 7.1:-76697333 | None:intergenic |
| ATTGTGGAATAGGCTTTGAA+GGG | 0.597355 | 7.1:+76697584 | MS.gene23855:intron |
| GAGAACTTTAATCAAAACAT+CGG | 0.604615 | 7.1:+76698942 | MS.gene23855:CDS |
| TAACAGCTGTGCAGTTGGAG+TGG | 0.606322 | 7.1:+76698123 | MS.gene23855:CDS |
| CAAGGGTGGTAGATATGTAG+AGG | 0.607536 | 7.1:+76699028 | MS.gene23855:CDS |
| AAAATACATCGGTTTGTCTG+AGG | 0.609392 | 7.1:+76698058 | MS.gene23855:CDS |
| ATGTAGAGGATACAAGTACA+TGG | 0.611228 | 7.1:+76699042 | MS.gene23855:CDS |
| ACTATGGTCAAGAGATGTTG+AGG | 0.614034 | 7.1:+76698148 | MS.gene23855:CDS |
| AGAATGAAGTTAGGATCACA+AGG | 0.616212 | 7.1:+76697255 | MS.gene23855:CDS |
| TCTTTAGCAGATGCTGTCAA+GGG | 0.621026 | 7.1:+76699011 | MS.gene23855:CDS |
| GAAAAGAATCCTCGCCCAAG+AGG | 0.632204 | 7.1:-76698508 | None:intergenic |
| GAGGGGAAAATAAAATACAT+CGG | 0.640822 | 7.1:+76698047 | MS.gene23855:CDS |
| TAAAGAAACTTGTTGAAGAG+GGG | 0.641137 | 7.1:+76698030 | MS.gene23855:CDS |
| TTAGCAGATGCTGTCAAGGG+TGG | 0.645754 | 7.1:+76699014 | MS.gene23855:CDS |
| GCTTTCCAAGAAGAGAGTGG+TGG | 0.651055 | 7.1:-76699080 | None:intergenic |
| TATGTGACAGCTGCCTGTGA+GGG | 0.654128 | 7.1:+76697689 | MS.gene23855:CDS |
| GCAAAAGGATGACTACAGGA+AGG | 0.664525 | 7.1:+76698558 | MS.gene23855:CDS |
| TTATGTGACAGCTGCCTGTG+AGG | 0.667465 | 7.1:+76697688 | MS.gene23855:CDS |
| GCAGCTTTCCAAGAAGAGAG+TGG | 0.668200 | 7.1:-76699083 | None:intergenic |
| CTGCCTGTGAGGGTAGCTTG+AGG | 0.673511 | 7.1:+76697699 | MS.gene23855:CDS |
| TTGGCATGGCTTCATCACCA+AGG | 0.680145 | 7.1:+76698882 | MS.gene23855:CDS |
| AGAAGAAGTTCATTGGTGTG+AGG | 0.680165 | 7.1:-76697423 | None:intergenic |
| GAAGAGAAATATGAGATCTG+TGG | 0.699778 | 7.1:+76697656 | MS.gene23855:CDS |
| GAATGAAGTTAGGATCACAA+GGG | 0.757296 | 7.1:+76697256 | MS.gene23855:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATGATGAATAATTTATA+TGG | + | chr7.1:76698589-76698608 | MS.gene23855:intron | 10.0% |
| !!! | ATTTATATGGATATTTTATA+TGG | + | chr7.1:76698602-76698621 | MS.gene23855:intron | 10.0% |
| !!! | TTCTTTTGATTTAAATTTCA+GGG | + | chr7.1:76697482-76697501 | MS.gene23855:intron | 15.0% |
| !!! | TTTCTTTTGATTTAAATTTC+AGG | + | chr7.1:76697481-76697500 | MS.gene23855:intron | 15.0% |
| !! | AAATCAAAAGAAAAGCTAAA+AGG | - | chr7.1:76697474-76697493 | None:intergenic | 20.0% |
| !! | AAATCAAAGAGAATTGAAAA+GGG | - | chr7.1:76697808-76697827 | None:intergenic | 20.0% |
| !! | AAATTGCAATAACATAACTA+AGG | - | chr7.1:76697511-76697530 | None:intergenic | 20.0% |
| !! | AATCAAAAGAAAAGCTAAAA+GGG | - | chr7.1:76697473-76697492 | None:intergenic | 20.0% |
| !! | TATTTAACACAAGTTCTTTA+TGG | + | chr7.1:76698626-76698645 | MS.gene23855:intron | 20.0% |
| !!! | AATTCTCTTTGATTTGATTT+TGG | + | chr7.1:76697813-76697832 | MS.gene23855:intron | 20.0% |
| !!! | ATGTGATATTTTCCTAATTT+AGG | + | chr7.1:76697860-76697879 | MS.gene23855:intron | 20.0% |
| !!! | ATTTTACAAACATGCTTAAA+AGG | - | chr7.1:76698748-76698767 | None:intergenic | 20.0% |
| !!! | TTGATTAAAGTTCTCAATTT+TGG | - | chr7.1:76698937-76698956 | None:intergenic | 20.0% |
| ! | AAACTAACACAAGAAGAAAT+GGG | + | chr7.1:76698978-76698997 | MS.gene23855:CDS | 25.0% |
| ! | ACACTTTCAATTTGAATTGT+TGG | + | chr7.1:76698403-76698422 | MS.gene23855:intron | 25.0% |
| ! | ATGTTTGTAAAATATGTTGC+AGG | + | chr7.1:76698755-76698774 | MS.gene23855:intron | 25.0% |
| ! | ATTTGTGTGTCTTGTAAATT+AGG | + | chr7.1:76698705-76698724 | MS.gene23855:intron | 25.0% |
| ! | CAAATCAAAGAGAATTGAAA+AGG | - | chr7.1:76697809-76697828 | None:intergenic | 25.0% |
| ! | GAGAACTTTAATCAAAACAT+CGG | + | chr7.1:76698942-76698961 | MS.gene23855:CDS | 25.0% |
| ! | TTTGTGTGTCTTGTAAATTA+GGG | + | chr7.1:76698706-76698725 | MS.gene23855:intron | 25.0% |
| !! | ATTAAAGTTCTCAATTTTGG+TGG | - | chr7.1:76698934-76698953 | None:intergenic | 25.0% |
| !! | ATTCAAATTGAAAGTGTGTT+TGG | - | chr7.1:76698400-76698419 | None:intergenic | 25.0% |
| !! | GTTAATTTGGCTACAAAATT+TGG | + | chr7.1:76697620-76697639 | MS.gene23855:CDS | 25.0% |
| !!! | ACTTTAGTTTTGCCTAAATT+AGG | - | chr7.1:76697875-76697894 | None:intergenic | 25.0% |
| !!! | TTGGTTTTCTTTGTTAGATT+GGG | + | chr7.1:76698003-76698022 | MS.gene23855:intron | 25.0% |
| !!! | TTTGGTTTTCTTTGTTAGAT+TGG | + | chr7.1:76698002-76698021 | MS.gene23855:intron | 25.0% |
| AAGAAATAATTCCAACTTGC+AGG | + | chr7.1:76698171-76698190 | MS.gene23855:CDS | 30.0% | |
| AAGTGTGAAAATTGTGGAAT+AGG | + | chr7.1:76697574-76697593 | MS.gene23855:intron | 30.0% | |
| AGTGAGAGAGAAAGTTAATT+TGG | + | chr7.1:76697607-76697626 | MS.gene23855:CDS | 30.0% | |
| AGTTATGATATTCTCTCTCA+GGG | + | chr7.1:76698456-76698475 | MS.gene23855:intron | 30.0% | |
| ATGCTTAAAAGGCAGAATAT+GGG | - | chr7.1:76698737-76698756 | None:intergenic | 30.0% | |
| ATTTGACAAAGTCAATGAAC+TGG | + | chr7.1:76698824-76698843 | MS.gene23855:CDS | 30.0% | |
| GAAACTAACACAAGAAGAAA+TGG | + | chr7.1:76698977-76698996 | MS.gene23855:CDS | 30.0% | |
| GAGGGGAAAATAAAATACAT+CGG | + | chr7.1:76698047-76698066 | MS.gene23855:CDS | 30.0% | |
| TTGATGAAGTGTGAAAATTG+TGG | + | chr7.1:76697568-76697587 | MS.gene23855:intron | 30.0% | |
| ! | TGGTTTTCTTTGTTAGATTG+GGG | + | chr7.1:76698004-76698023 | MS.gene23855:intron | 30.0% |
| !! | CTAAAGAAACTTGTTGAAGA+GGG | + | chr7.1:76698029-76698048 | MS.gene23855:CDS | 30.0% |
| !! | TAAAGAAACTTGTTGAAGAG+GGG | + | chr7.1:76698030-76698049 | MS.gene23855:CDS | 30.0% |
| !!! | TGTGATGACTTCAACTTTTT+TGG | + | chr7.1:76697984-76698003 | MS.gene23855:intron | 30.0% |
| AAAAGTGACACCAGATTGTA+TGG | - | chr7.1:76697379-76697398 | None:intergenic | 35.0% | |
| AAAGTGGGAAGAATGAAGTT+AGG | + | chr7.1:76697246-76697265 | MS.gene23855:CDS | 35.0% | |
| AATCAAACCGTGACTTCAAT+TGG | - | chr7.1:76697782-76697801 | None:intergenic | 35.0% | |
| AGAATGAAGTTAGGATCACA+AGG | + | chr7.1:76697255-76697274 | MS.gene23855:CDS | 35.0% | |
| ATAGTTGCATATAGTCCTCT+TGG | + | chr7.1:76698493-76698512 | MS.gene23855:CDS | 35.0% | |
| ATGAGTATGTCAGCTTTCTA+TGG | + | chr7.1:76697309-76697328 | MS.gene23855:CDS | 35.0% | |
| ATGTAGAGGATACAAGTACA+TGG | + | chr7.1:76699042-76699061 | MS.gene23855:CDS | 35.0% | |
| CAATGAACTTCTTCTTGGAA+AGG | + | chr7.1:76697431-76697450 | MS.gene23855:CDS | 35.0% | |
| CATGCTTAAAAGGCAGAATA+TGG | - | chr7.1:76698738-76698757 | None:intergenic | 35.0% | |
| CTTTCCAAGAAGAAGTTCAT+TGG | - | chr7.1:76697433-76697452 | None:intergenic | 35.0% | |
| GAAGAGAAATATGAGATCTG+TGG | + | chr7.1:76697656-76697675 | MS.gene23855:CDS | 35.0% | |
| GAATGAAGTTAGGATCACAA+GGG | + | chr7.1:76697256-76697275 | MS.gene23855:CDS | 35.0% | |
| GAGTTATGATATTCTCTCTC+AGG | + | chr7.1:76698455-76698474 | MS.gene23855:intron | 35.0% | |
| TAAATATCACACCTGCAAGT+TGG | - | chr7.1:76698185-76698204 | None:intergenic | 35.0% | |
| TAGTTGCATATAGTCCTCTT+GGG | + | chr7.1:76698494-76698513 | MS.gene23855:CDS | 35.0% | |
| ! | AATTGTGGAATAGGCTTTGA+AGG | + | chr7.1:76697583-76697602 | MS.gene23855:intron | 35.0% |
| ! | GTAGCTTAAACTTTTGCATC+AGG | + | chr7.1:76697835-76697854 | MS.gene23855:intron | 35.0% |
| !! | AAAATACATCGGTTTGTCTG+AGG | + | chr7.1:76698058-76698077 | MS.gene23855:CDS | 35.0% |
| !! | ATTGTGGAATAGGCTTTGAA+GGG | + | chr7.1:76697584-76697603 | MS.gene23855:intron | 35.0% |
| !! | GCTAAAGAAACTTGTTGAAG+AGG | + | chr7.1:76698028-76698047 | MS.gene23855:CDS | 35.0% |
| AATGAACTGGCCACAAAGAA+GGG | + | chr7.1:76698837-76698856 | MS.gene23855:CDS | 40.0% | |
| ACTATGGTCAAGAGATGTTG+AGG | + | chr7.1:76698148-76698167 | MS.gene23855:CDS | 40.0% | |
| ACTTGCAAAAGGATGACTAC+AGG | + | chr7.1:76698554-76698573 | MS.gene23855:CDS | 40.0% | |
| AGAAGAAGTTCATTGGTGTG+AGG | - | chr7.1:76697426-76697445 | None:intergenic | 40.0% | |
| ATATAGTCTGATTCTGCTGC+AGG | - | chr7.1:76698806-76698825 | None:intergenic | 40.0% | |
| ATATTCTCTCTCAGGGAACT+TGG | + | chr7.1:76698463-76698482 | MS.gene23855:intron | 40.0% | |
| ATCCATCATGCCATACAATC+TGG | + | chr7.1:76697366-76697385 | MS.gene23855:CDS | 40.0% | |
| CACACCAATGAACTTCTTCT+TGG | + | chr7.1:76697426-76697445 | MS.gene23855:CDS | 40.0% | |
| CTTGACACTTCTGACTTCTA+TGG | + | chr7.1:76697399-76697418 | MS.gene23855:CDS | 40.0% | |
| GTTGCTTGACAACTTGCAAA+AGG | + | chr7.1:76698543-76698562 | MS.gene23855:CDS | 40.0% | |
| TCGTCTTCCAATTGAAGTCA+CGG | + | chr7.1:76697772-76697791 | MS.gene23855:CDS | 40.0% | |
| TCTTTAGCAGATGCTGTCAA+GGG | + | chr7.1:76699011-76699030 | MS.gene23855:CDS | 40.0% | |
| ! | ATCATGTCAGGTTCAGGTTT+AGG | - | chr7.1:76697339-76697358 | None:intergenic | 40.0% |
| !! | ATTTTGGTGGTTCCAGGTAT+CGG | - | chr7.1:76698921-76698940 | None:intergenic | 40.0% |
| !! | TTCTCAATTTTGGTGGTTCC+AGG | - | chr7.1:76698927-76698946 | None:intergenic | 40.0% |
| !!! | AGGTTTTCAGGTTGAAATCG+TGG | - | chr7.1:76698786-76698805 | None:intergenic | 40.0% |
| AGAGCAATCATGTCAGGTTC+AGG | - | chr7.1:76697345-76697364 | None:intergenic | 45.0% | |
| AGCATTTCTCTCTCTCTCTC+TGG | + | chr7.1:76698232-76698251 | MS.gene23855:intron | 45.0% | |
| ATACTCCACCACTCTCTTCT+TGG | + | chr7.1:76699075-76699094 | MS.gene23855:CDS | 45.0% | |
| CAAGGGTGGTAGATATGTAG+AGG | + | chr7.1:76699028-76699047 | MS.gene23855:CDS | 45.0% | |
| CAATGAACTGGCCACAAAGA+AGG | + | chr7.1:76698836-76698855 | MS.gene23855:CDS | 45.0% | |
| CACCAGATTGTATGGCATGA+TGG | - | chr7.1:76697371-76697390 | None:intergenic | 45.0% | |
| CATGCATCCAAGTCCTTGTA+AGG | - | chr7.1:76697292-76697311 | None:intergenic | 45.0% | |
| GAAGTTAGGATCACAAGGGA+TGG | + | chr7.1:76697260-76697279 | MS.gene23855:CDS | 45.0% | |
| GCAAAAGGATGACTACAGGA+AGG | + | chr7.1:76698558-76698577 | MS.gene23855:CDS | 45.0% | |
| GTCTTTAGCAGATGCTGTCA+AGG | + | chr7.1:76699010-76699029 | MS.gene23855:CDS | 45.0% | |
| TACTCCATCTCAGCTTGCAT+TGG | + | chr7.1:76698863-76698882 | MS.gene23855:CDS | 45.0% | |
| TCCAACTGCACAGCTGTTAT+TGG | - | chr7.1:76698122-76698141 | None:intergenic | 45.0% | |
| TCCAATAACAGCTGTGCAGT+TGG | + | chr7.1:76698118-76698137 | MS.gene23855:CDS | 45.0% | |
| TCTCTCAGGGAACTTGGTAT+TGG | + | chr7.1:76698469-76698488 | MS.gene23855:intron | 45.0% | |
| TCTTCTGATTGTTGCTGGTG+AGG | - | chr7.1:76698084-76698103 | None:intergenic | 45.0% | |
| TGGAGTACATCCCTTCTTTG+TGG | - | chr7.1:76698850-76698869 | None:intergenic | 45.0% | |
| TGGATGAGAGCAATCATGTC+AGG | - | chr7.1:76697351-76697370 | None:intergenic | 45.0% | |
| TGTGCTCTTCTGATTGTTGC+TGG | - | chr7.1:76698089-76698108 | None:intergenic | 45.0% | |
| ! | ATGTCAGGTTCAGGTTTAGG+AGG | - | chr7.1:76697336-76697355 | None:intergenic | 45.0% |
| ! | GAAGTGTCCTTACAAGGACT+TGG | + | chr7.1:76697282-76697301 | MS.gene23855:CDS | 45.0% |
| ! | TGATTCTGCTGCAGGTTTTC+AGG | - | chr7.1:76698798-76698817 | None:intergenic | 45.0% |
| !! | TTTTGGTGGTTCCAGGTATC+GGG | - | chr7.1:76698920-76698939 | None:intergenic | 45.0% |
| CAGGCAGCTGTCACATAACT+TGG | - | chr7.1:76697686-76697705 | None:intergenic | 50.0% | |
| CATGCCAATGCAAGCTGAGA+TGG | - | chr7.1:76698870-76698889 | None:intergenic | 50.0% | |
| GAAAAGAATCCTCGCCCAAG+AGG | - | chr7.1:76698511-76698530 | None:intergenic | 50.0% | |
| GCAGCTTTCCAAGAAGAGAG+TGG | - | chr7.1:76699086-76699105 | None:intergenic | 50.0% | |
| GCTTTCCAAGAAGAGAGTGG+TGG | - | chr7.1:76699083-76699102 | None:intergenic | 50.0% | |
| TAACAGCTGTGCAGTTGGAG+TGG | + | chr7.1:76698123-76698142 | MS.gene23855:CDS | 50.0% | |
| TATGTGACAGCTGCCTGTGA+GGG | + | chr7.1:76697689-76697708 | MS.gene23855:CDS | 50.0% | |
| TGCAGTTGGAGTGGTCACTA+TGG | + | chr7.1:76698132-76698151 | MS.gene23855:CDS | 50.0% | |
| TTAGCAGATGCTGTCAAGGG+TGG | + | chr7.1:76699014-76699033 | MS.gene23855:CDS | 50.0% | |
| TTATGTGACAGCTGCCTGTG+AGG | + | chr7.1:76697688-76697707 | MS.gene23855:CDS | 50.0% | |
| TTGGCATGGCTTCATCACCA+AGG | + | chr7.1:76698882-76698901 | MS.gene23855:CDS | 50.0% | |
| ! | CATCTCAGCTTGCATTGGCA+TGG | + | chr7.1:76698868-76698887 | MS.gene23855:CDS | 50.0% |
| ! | GGGCGAGGATTCTTTTCATC+AGG | + | chr7.1:76698514-76698533 | MS.gene23855:CDS | 50.0% |
| !! | GGGATGGAAGTGTCCTTACA+AGG | + | chr7.1:76697276-76697295 | MS.gene23855:CDS | 50.0% |
| GCATATAGTCCTCTTGGGCG+AGG | + | chr7.1:76698499-76698518 | MS.gene23855:CDS | 55.0% | |
| TCTCCTCAAGCTACCCTCAC+AGG | - | chr7.1:76697705-76697724 | None:intergenic | 55.0% | |
| AACGACGTGTGCCCGATACC+TGG | + | chr7.1:76698906-76698925 | MS.gene23855:CDS | 60.0% | |
| CTGCCTGTGAGGGTAGCTTG+AGG | + | chr7.1:76697699-76697718 | MS.gene23855:CDS | 60.0% | |
| TCGGGCACACGTCGTTTCCT+TGG | - | chr7.1:76698902-76698921 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 76697240 | 76699112 | 76697240 | ID=MS.gene23855 |
| chr7.1 | mRNA | 76697240 | 76699112 | 76697240 | ID=MS.gene23855.t1;Parent=MS.gene23855 |
| chr7.1 | exon | 76697240 | 76697452 | 76697240 | ID=MS.gene23855.t1.exon1;Parent=MS.gene23855.t1 |
| chr7.1 | CDS | 76697240 | 76697452 | 76697240 | ID=cds.MS.gene23855.t1;Parent=MS.gene23855.t1 |
| chr7.1 | exon | 76697596 | 76697793 | 76697596 | ID=MS.gene23855.t1.exon2;Parent=MS.gene23855.t1 |
| chr7.1 | CDS | 76697596 | 76697793 | 76697596 | ID=cds.MS.gene23855.t1;Parent=MS.gene23855.t1 |
| chr7.1 | exon | 76698020 | 76698192 | 76698020 | ID=MS.gene23855.t1.exon3;Parent=MS.gene23855.t1 |
| chr7.1 | CDS | 76698020 | 76698192 | 76698020 | ID=cds.MS.gene23855.t1;Parent=MS.gene23855.t1 |
| chr7.1 | exon | 76698477 | 76698579 | 76698477 | ID=MS.gene23855.t1.exon4;Parent=MS.gene23855.t1 |
| chr7.1 | CDS | 76698477 | 76698579 | 76698477 | ID=cds.MS.gene23855.t1;Parent=MS.gene23855.t1 |
| chr7.1 | exon | 76698777 | 76699112 | 76698777 | ID=MS.gene23855.t1.exon5;Parent=MS.gene23855.t1 |
| chr7.1 | CDS | 76698777 | 76699112 | 76698777 | ID=cds.MS.gene23855.t1;Parent=MS.gene23855.t1 |
| Gene Sequence |
| Protein sequence |
