Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56144.t1 | XP_003621701.1 | 94.4 | 339 | 19 | 0 | 1 | 339 | 1 | 339 | 1.10E-185 | 659.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56144.t1 | Q7XT99 | 76.5 | 340 | 75 | 2 | 3 | 337 | 10 | 349 | 2.9e-153 | 542.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56144.t1 | A2Q5B6 | 94.4 | 339 | 19 | 0 | 1 | 339 | 1 | 339 | 8.2e-186 | 659.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56144.t1 | MTR_7g021850 | 94.395 | 339 | 19 | 0 | 1 | 339 | 1 | 339 | 0.0 | 672 |
| MS.gene56144.t1 | MTR_7g021680 | 86.095 | 338 | 45 | 2 | 1 | 337 | 1 | 337 | 0.0 | 608 |
| MS.gene56144.t1 | MTR_7g021820 | 86.095 | 338 | 45 | 2 | 1 | 337 | 1 | 337 | 0.0 | 608 |
| MS.gene56144.t1 | MTR_1g102750 | 57.738 | 336 | 134 | 5 | 4 | 332 | 5 | 339 | 2.25e-135 | 389 |
| MS.gene56144.t1 | MTR_7g114980 | 57.270 | 337 | 133 | 5 | 6 | 332 | 13 | 348 | 2.50e-134 | 386 |
| MS.gene56144.t1 | MTR_7g114970 | 57.692 | 338 | 135 | 5 | 4 | 334 | 7 | 343 | 9.37e-134 | 384 |
| MS.gene56144.t1 | MTR_7g114990 | 57.229 | 332 | 133 | 6 | 7 | 332 | 16 | 344 | 1.73e-133 | 384 |
| MS.gene56144.t1 | MTR_7g115010 | 53.593 | 334 | 131 | 5 | 7 | 332 | 12 | 329 | 1.75e-122 | 355 |
| MS.gene56144.t1 | MTR_1g102750 | 60.638 | 282 | 108 | 3 | 4 | 283 | 5 | 285 | 7.05e-121 | 350 |
| MS.gene56144.t1 | MTR_7g114970 | 61.871 | 278 | 103 | 3 | 6 | 281 | 9 | 285 | 6.28e-120 | 347 |
| MS.gene56144.t1 | MTR_7g114980 | 60.498 | 281 | 105 | 3 | 6 | 281 | 13 | 292 | 2.90e-119 | 346 |
| MS.gene56144.t1 | MTR_7g114970 | 61.733 | 277 | 103 | 3 | 6 | 280 | 9 | 284 | 4.51e-119 | 345 |
| MS.gene56144.t1 | MTR_7g114970 | 59.514 | 247 | 93 | 4 | 94 | 334 | 4 | 249 | 9.20e-98 | 290 |
| MS.gene56144.t1 | MTR_7g021825 | 89.041 | 146 | 16 | 0 | 158 | 303 | 15 | 160 | 2.89e-97 | 285 |
| MS.gene56144.t1 | MTR_7g114970 | 63.918 | 194 | 69 | 1 | 6 | 198 | 9 | 202 | 4.63e-85 | 255 |
| MS.gene56144.t1 | MTR_7g114970 | 59.799 | 199 | 73 | 4 | 139 | 331 | 1 | 198 | 1.73e-76 | 233 |
| MS.gene56144.t1 | MTR_7g021670 | 82.443 | 131 | 22 | 1 | 1 | 131 | 1 | 130 | 3.40e-72 | 224 |
| MS.gene56144.t1 | MTR_7g021670 | 80.734 | 109 | 20 | 1 | 232 | 339 | 145 | 253 | 7.04e-57 | 185 |
| MS.gene56144.t1 | MTR_7g021685 | 85.507 | 69 | 10 | 0 | 1 | 69 | 1 | 69 | 2.45e-38 | 132 |
| MS.gene56144.t1 | MTR_1g102740 | 53.333 | 105 | 44 | 2 | 233 | 332 | 3 | 107 | 2.19e-31 | 114 |
| MS.gene56144.t1 | MTR_3g449790 | 29.023 | 348 | 191 | 11 | 1 | 315 | 32 | 356 | 1.34e-30 | 119 |
| MS.gene56144.t1 | MTR_3g449790 | 28.448 | 348 | 187 | 11 | 1 | 315 | 32 | 350 | 3.37e-30 | 118 |
| MS.gene56144.t1 | MTR_1g042730 | 27.628 | 333 | 190 | 12 | 8 | 296 | 65 | 390 | 3.21e-23 | 99.8 |
| MS.gene56144.t1 | MTR_3g092140 | 27.119 | 295 | 178 | 11 | 38 | 311 | 71 | 349 | 3.08e-22 | 97.8 |
| MS.gene56144.t1 | MTR_1g047250 | 25.776 | 322 | 210 | 10 | 8 | 310 | 5 | 316 | 1.47e-19 | 88.2 |
| MS.gene56144.t1 | MTR_4g092750 | 32.258 | 217 | 131 | 7 | 8 | 214 | 5 | 215 | 8.98e-18 | 82.8 |
| MS.gene56144.t1 | MTR_4g092750 | 32.258 | 217 | 131 | 7 | 8 | 214 | 5 | 215 | 1.08e-17 | 82.8 |
| MS.gene56144.t1 | MTR_4g092750 | 32.258 | 217 | 131 | 7 | 8 | 214 | 5 | 215 | 1.82e-17 | 82.0 |
| MS.gene56144.t1 | MTR_8g088160 | 26.103 | 272 | 150 | 11 | 14 | 239 | 49 | 315 | 6.68e-13 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56144.t1 | AT1G60710 | 76.106 | 339 | 78 | 2 | 4 | 339 | 7 | 345 | 0.0 | 540 |
| MS.gene56144.t1 | AT1G60730 | 75.516 | 339 | 80 | 2 | 4 | 339 | 7 | 345 | 0.0 | 535 |
| MS.gene56144.t1 | AT1G60690 | 74.481 | 337 | 83 | 2 | 4 | 337 | 7 | 343 | 0.0 | 532 |
| MS.gene56144.t1 | AT1G60680 | 74.260 | 338 | 83 | 3 | 4 | 337 | 7 | 344 | 0.0 | 523 |
| MS.gene56144.t1 | AT1G60730 | 71.309 | 359 | 80 | 3 | 4 | 339 | 7 | 365 | 0.0 | 523 |
| MS.gene56144.t1 | AT1G10810 | 70.000 | 340 | 99 | 2 | 2 | 338 | 5 | 344 | 3.34e-177 | 494 |
| MS.gene56144.t1 | AT1G60750 | 70.710 | 338 | 78 | 4 | 4 | 337 | 8 | 328 | 2.19e-173 | 484 |
| MS.gene56144.t1 | AT1G10810 | 69.742 | 271 | 79 | 2 | 71 | 338 | 22 | 292 | 5.33e-139 | 396 |
| MS.gene56144.t1 | AT1G60680 | 78.070 | 228 | 49 | 1 | 4 | 230 | 7 | 234 | 3.53e-130 | 372 |
| MS.gene56144.t1 | AT1G10810 | 73.504 | 234 | 62 | 0 | 2 | 235 | 5 | 238 | 2.81e-122 | 352 |
| MS.gene56144.t1 | AT1G60730 | 74.101 | 139 | 36 | 0 | 4 | 142 | 7 | 145 | 3.27e-71 | 219 |
| MS.gene56144.t1 | AT5G53580 | 30.345 | 290 | 159 | 11 | 46 | 311 | 80 | 350 | 6.84e-26 | 106 |
| MS.gene56144.t1 | AT1G06690 | 29.254 | 335 | 197 | 12 | 6 | 315 | 48 | 367 | 1.04e-25 | 106 |
| MS.gene56144.t1 | AT4G33670 | 27.964 | 329 | 202 | 10 | 1 | 315 | 1 | 308 | 2.42e-24 | 101 |
| MS.gene56144.t1 | AT1G04690 | 27.273 | 308 | 195 | 10 | 8 | 297 | 5 | 301 | 2.66e-23 | 99.0 |
| MS.gene56144.t1 | AT1G04420 | 26.796 | 362 | 211 | 13 | 8 | 325 | 60 | 411 | 1.03e-22 | 98.2 |
Find 79 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATTTCCCTTCAATATATT+TGG | 0.148190 | 7.4:-79857980 | None:intergenic |
| TCCAATTGCACAGCTGTTAT+TGG | 0.154954 | 7.4:-79858637 | None:intergenic |
| CTTCCATGTAGGTTCCTTTC+CGG | 0.219280 | 7.4:-79859999 | None:intergenic |
| CACACCAATGAAGTTCTTCT+TGG | 0.223012 | 7.4:+79857725 | MS.gene56144:CDS |
| GTTCTCAACTTTGGTGGTTC+CGG | 0.259522 | 7.4:-79859882 | None:intergenic |
| CTTGATACTTCTGATATCTA+TGG | 0.267132 | 7.4:+79857698 | MS.gene56144:CDS |
| AAGAAATAATTCCAACTTGC+AGG | 0.276199 | 7.4:+79858689 | MS.gene56144:CDS |
| GTTGAATTGGCTACAAAGTT+TGG | 0.298080 | 7.4:+79857955 | MS.gene56144:CDS |
| TTCTCAACTTTGGTGGTTCC+GGG | 0.307826 | 7.4:-79859881 | None:intergenic |
| TTCCTTAGGGAACTTGGTAT+TGG | 0.357453 | 7.4:+79858965 | MS.gene56144:intron |
| AGTGAGAGAGAAGGTTGAAT+TGG | 0.360017 | 7.4:+79857942 | MS.gene56144:CDS |
| AATCAAACCGTGATTTCAAT+TGG | 0.361716 | 7.4:-79858114 | None:intergenic |
| TCCAATAACAGCTGTGCAAT+TGG | 0.363190 | 7.4:+79858636 | MS.gene56144:CDS |
| ACTTTGGTGGTTCCGGGTAT+CGG | 0.366436 | 7.4:-79859875 | None:intergenic |
| ATCATGTCAGGTTCAGGTTT+AGG | 0.367686 | 7.4:-79857635 | None:intergenic |
| CTTTCCAAGAAGAACTTCAT+TGG | 0.376886 | 7.4:-79857729 | None:intergenic |
| AGAGCAATCATGTCAGGTTC+AGG | 0.397066 | 7.4:-79857641 | None:intergenic |
| CTTTGGTGGTTCCGGGTATC+GGG | 0.407993 | 7.4:-79859874 | None:intergenic |
| TTGATTAAAGTTCTCAACTT+TGG | 0.412299 | 7.4:-79859891 | None:intergenic |
| TAATGAACTGGCTGCTAAGA+AGG | 0.416202 | 7.4:+79859793 | MS.gene56144:CDS |
| ATTGTTGCATATAGTCCTCT+TGG | 0.416557 | 7.4:+79858989 | MS.gene56144:CDS |
| GTCCTTGGCAGATATTGTTA+AGG | 0.418905 | 7.4:+79859967 | MS.gene56144:CDS |
| AAAAGTGATACCAGATTGTA+TGG | 0.425728 | 7.4:-79857675 | None:intergenic |
| ATTTGAGAGGGTTAATGAAC+TGG | 0.426318 | 7.4:+79859781 | MS.gene56144:CDS |
| AATTGCAGAAATTGAGTCCT+TGG | 0.426435 | 7.4:+79859952 | MS.gene56144:CDS |
| CTTGGTTGCATGAGCATGTC+AGG | 0.442441 | 7.4:+79857599 | MS.gene56144:CDS |
| GCAGTAGGAAGAATGAAGTT+AGG | 0.442452 | 7.4:+79857545 | MS.gene56144:CDS |
| CAAGCTTCTCTCACGTAAGC+TGG | 0.451335 | 7.4:-79858018 | None:intergenic |
| ACACTCCACCACTTTCGTCT+TGG | 0.460340 | 7.4:+79860029 | MS.gene56144:CDS |
| TCCTTGGCAGATATTGTTAA+GGG | 0.464128 | 7.4:+79859968 | MS.gene56144:CDS |
| ATTGTTAAGGGTGACAGAAC+CGG | 0.471059 | 7.4:+79859980 | MS.gene56144:CDS |
| ATTAAAGTTCTCAACTTTGG+TGG | 0.473185 | 7.4:-79859888 | None:intergenic |
| AATTGTGGACAGGCTTTAAG+AGG | 0.474129 | 7.4:+79857916 | MS.gene56144:intron |
| TTTGGAGCCAAATATATTGA+AGG | 0.475808 | 7.4:+79857973 | MS.gene56144:CDS |
| AAGAGGAGGAGTGAGAGAGA+AGG | 0.485439 | 7.4:+79857933 | MS.gene56144:CDS |
| CATCTCAGCTTGCATTGGCA+TGG | 0.489745 | 7.4:+79859825 | MS.gene56144:CDS |
| ATATAGTCTGATTCTGCTGT+AGG | 0.498584 | 7.4:-79859760 | None:intergenic |
| ATGAGCATGTCAGGTGTCTA+TGG | 0.498898 | 7.4:+79857608 | MS.gene56144:CDS |
| TGCAATTGGAGTGGTCACTA+TGG | 0.500317 | 7.4:+79858650 | MS.gene56144:CDS |
| TCGGGCACACGTCGTCTCCT+TGG | 0.501395 | 7.4:-79859856 | None:intergenic |
| CAATGAAGTTCTTCTTGGAA+AGG | 0.501797 | 7.4:+79857730 | MS.gene56144:CDS |
| ATCCACCATGCCATACAATC+TGG | 0.502255 | 7.4:+79857665 | MS.gene56144:CDS |
| TTGTTGCATATAGTCCTCTT+GGG | 0.507233 | 7.4:+79858990 | MS.gene56144:CDS |
| GAAGTGTCCTTGCAAGGACT+TGG | 0.508887 | 7.4:+79857581 | MS.gene56144:CDS |
| TACTCCATCTCAGCTTGCAT+TGG | 0.515172 | 7.4:+79859820 | MS.gene56144:CDS |
| CATGCCAATGCAAGCTGAGA+TGG | 0.529498 | 7.4:-79859824 | None:intergenic |
| TCGTCTTCCAATTGAAATCA+CGG | 0.530494 | 7.4:+79858107 | MS.gene56144:CDS |
| GCATATAGTCCTCTTGGGCG+AGG | 0.531821 | 7.4:+79858995 | MS.gene56144:CDS |
| GAAGTTAGGATCACAAGGAA+TGG | 0.532873 | 7.4:+79857559 | MS.gene56144:CDS |
| TCTTCTGATTGTTGAAGCTG+AGG | 0.532875 | 7.4:-79858599 | None:intergenic |
| ACTAAATCAAACCTGCAAGT+TGG | 0.537019 | 7.4:-79858700 | None:intergenic |
| AGAAGAACAATGACAGCAGT+AGG | 0.537429 | 7.4:+79857530 | None:intergenic |
| GTGTCAGATTCCTTCCATGT+AGG | 0.542312 | 7.4:-79860010 | None:intergenic |
| TGGATGAGAGCAATCATGTC+AGG | 0.561182 | 7.4:-79857647 | None:intergenic |
| TTGGAGCCAAATATATTGAA+GGG | 0.564347 | 7.4:+79857974 | MS.gene56144:CDS |
| TACAAAGGATGACTACCGCC+AGG | 0.569817 | 7.4:+79859054 | MS.gene56144:CDS |
| GACGACGTGTGCCCGATACC+CGG | 0.570620 | 7.4:+79859863 | MS.gene56144:CDS |
| GAAGAACTTCATTGGTGTGA+GGG | 0.571972 | 7.4:-79857721 | None:intergenic |
| ATGTCAGGTTCAGGTTTAGG+AGG | 0.578905 | 7.4:-79857632 | None:intergenic |
| GAACCGGAAAGGAACCTACA+TGG | 0.581675 | 7.4:+79859996 | MS.gene56144:CDS |
| AGAATCAGACTATATTTGAG+AGG | 0.585843 | 7.4:+79859768 | MS.gene56144:CDS |
| CATGCAACCAAGTCCTTGCA+AGG | 0.590784 | 7.4:-79857588 | None:intergenic |
| GGAATGGAAGTGTCCTTGCA+AGG | 0.592055 | 7.4:+79857575 | MS.gene56144:CDS |
| AATGAACTGGCTGCTAAGAA+GGG | 0.592584 | 7.4:+79859794 | MS.gene56144:CDS |
| GAATCAGACTATATTTGAGA+GGG | 0.604511 | 7.4:+79859769 | MS.gene56144:CDS |
| CGGAAAGGAACCTACATGGA+AGG | 0.604731 | 7.4:+79860000 | MS.gene56144:CDS |
| GAGAACTTTAATCAAAACAT+CGG | 0.608267 | 7.4:+79859899 | MS.gene56144:CDS |
| ACCCTTAACAATATCTGCCA+AGG | 0.610315 | 7.4:-79859969 | None:intergenic |
| TGTGGACAGGCTTTAAGAGG+AGG | 0.614236 | 7.4:+79857919 | MS.gene56144:intron |
| GATTGCTGAGAACTTTACAA+AGG | 0.626430 | 7.4:+79859039 | MS.gene56144:CDS |
| TAAGGGTGACAGAACCGGAA+AGG | 0.631823 | 7.4:+79859985 | MS.gene56144:CDS |
| GAAAAGAATCCTCGCCCAAG+AGG | 0.632204 | 7.4:-79859004 | None:intergenic |
| AGAAGAACTTCATTGGTGTG+AGG | 0.636443 | 7.4:-79857722 | None:intergenic |
| AGAATGAAGTTAGGATCACA+AGG | 0.639560 | 7.4:+79857554 | MS.gene56144:CDS |
| TAACAGCTGTGCAATTGGAG+TGG | 0.661184 | 7.4:+79858641 | MS.gene56144:CDS |
| ACTATGGTCAAGAGATGTCG+AGG | 0.661474 | 7.4:+79858666 | MS.gene56144:CDS |
| TTGGCATGGCTTCATCACCA+AGG | 0.693380 | 7.4:+79859839 | MS.gene56144:CDS |
| TGATACCAGATTGTATGGCA+TGG | 0.698667 | 7.4:-79857670 | None:intergenic |
| TACCAGATTGTATGGCATGG+TGG | 0.704224 | 7.4:-79857667 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAATATAATATTACATTT+AGG | - | chr7.4:79859699-79859718 | None:intergenic | 10.0% |
| !! | AAGCATGAATAATTATTAAT+AGG | - | chr7.4:79859376-79859395 | None:intergenic | 15.0% |
| !! | TATAAAAATGTGTTTCAATA+TGG | - | chr7.4:79858226-79858245 | None:intergenic | 15.0% |
| !! | TATTACCTAAAATTAATGTT+TGG | + | chr7.4:79858248-79858267 | MS.gene56144:intron | 15.0% |
| !! | TATTTGTTTACATGTATAAT+TGG | + | chr7.4:79858473-79858492 | MS.gene56144:intron | 15.0% |
| !!! | AAAATAAGCATTTTTTTTGA+AGG | - | chr7.4:79859410-79859429 | None:intergenic | 15.0% |
| !!! | ACATTGATTAATAAGTTATA+AGG | - | chr7.4:79859628-79859647 | None:intergenic | 15.0% |
| !!! | TGGATAAATTATTTTCAAAA+AGG | + | chr7.4:79858268-79858287 | MS.gene56144:intron | 15.0% |
| !!! | TTATGATTTTTTTTTCCTTA+GGG | + | chr7.4:79858952-79858971 | MS.gene56144:intron | 15.0% |
| !!! | TTTATCCAAACATTAATTTT+AGG | - | chr7.4:79858256-79858275 | None:intergenic | 15.0% |
| !! | AAAAAAAATCATAACTCATG+AGG | - | chr7.4:79858946-79858965 | None:intergenic | 20.0% |
| !! | AAATTTCCCTTCAATATATT+TGG | - | chr7.4:79857983-79858002 | None:intergenic | 20.0% |
| !! | ACGATTGTAATTTAAGAAAA+TGG | + | chr7.4:79858809-79858828 | MS.gene56144:intron | 20.0% |
| !! | ATCTATATAGTTCATATCAA+AGG | + | chr7.4:79859536-79859555 | MS.gene56144:intron | 20.0% |
| !! | TTAAAATTGCAATGATATGA+AGG | + | chr7.4:79858772-79858791 | MS.gene56144:intron | 20.0% |
| !! | TTATTAATCAATGTACATCA+GGG | + | chr7.4:79859634-79859653 | MS.gene56144:intron | 20.0% |
| !!! | AAAATTCTTTGATTCGATTT+TGG | + | chr7.4:79858143-79858162 | MS.gene56144:intron | 20.0% |
| !!! | GTTATGATTTTTTTTTCCTT+AGG | + | chr7.4:79858951-79858970 | MS.gene56144:intron | 20.0% |
| ! | AACTAACAAGTATGAAATAC+TGG | + | chr7.4:79859142-79859161 | MS.gene56144:intron | 25.0% |
| ! | AACTTTCTCTCTTAATCTAA+CGG | - | chr7.4:79858328-79858347 | None:intergenic | 25.0% |
| ! | AGCAAACATATGCTTATTTA+TGG | - | chr7.4:79858185-79858204 | None:intergenic | 25.0% |
| ! | CTTAAAAAACTAGTTGAAGA+GGG | + | chr7.4:79858547-79858566 | MS.gene56144:CDS | 25.0% |
| ! | CTTATTAATCAATGTACATC+AGG | + | chr7.4:79859633-79859652 | MS.gene56144:intron | 25.0% |
| ! | GAGAACTTTAATCAAAACAT+CGG | + | chr7.4:79859899-79859918 | MS.gene56144:CDS | 25.0% |
| ! | GAGGGAAAAATAAAATACAT+TGG | + | chr7.4:79858565-79858584 | MS.gene56144:CDS | 25.0% |
| ! | TTGATTAAAGTTCTCAACTT+TGG | - | chr7.4:79859894-79859913 | None:intergenic | 25.0% |
| !! | ATAATTGACGTAGAACATTT+TGG | - | chr7.4:79859346-79859365 | None:intergenic | 25.0% |
| !! | TAATTGACGTAGAACATTTT+GGG | - | chr7.4:79859345-79859364 | None:intergenic | 25.0% |
| !!! | AAAAAAATGCTTATTTTCCG+TGG | + | chr7.4:79859413-79859432 | MS.gene56144:intron | 25.0% |
| AAAACATGTATGGTATAGTG+AGG | - | chr7.4:79859453-79859472 | None:intergenic | 30.0% | |
| AAAAGTGATACCAGATTGTA+TGG | - | chr7.4:79857678-79857697 | None:intergenic | 30.0% | |
| AAGAAATAATTCCAACTTGC+AGG | + | chr7.4:79858689-79858708 | MS.gene56144:CDS | 30.0% | |
| AATCAAACCGTGATTTCAAT+TGG | - | chr7.4:79858117-79858136 | None:intergenic | 30.0% | |
| AATGTGTATGTGTGAAATTG+TGG | + | chr7.4:79857901-79857920 | MS.gene56144:intron | 30.0% | |
| AGAATCAGACTATATTTGAG+AGG | + | chr7.4:79859768-79859787 | MS.gene56144:CDS | 30.0% | |
| ATTAAAGTTCTCAACTTTGG+TGG | - | chr7.4:79859891-79859910 | None:intergenic | 30.0% | |
| ATTGAATGCAATCTCATGTT+CGG | + | chr7.4:79859227-79859246 | MS.gene56144:intron | 30.0% | |
| CCCAATCTTACATAGTAAAA+GGG | - | chr7.4:79858524-79858543 | None:intergenic | 30.0% | |
| CTTGATACTTCTGATATCTA+TGG | + | chr7.4:79857698-79857717 | MS.gene56144:CDS | 30.0% | |
| GAATCAGACTATATTTGAGA+GGG | + | chr7.4:79859769-79859788 | MS.gene56144:CDS | 30.0% | |
| GCTTAAAAAACTAGTTGAAG+AGG | + | chr7.4:79858546-79858565 | MS.gene56144:CDS | 30.0% | |
| TATGGTATAGTGAGGATATA+CGG | - | chr7.4:79859445-79859464 | None:intergenic | 30.0% | |
| TATTACCAATGTCTATGTGT+CGG | - | chr7.4:79859187-79859206 | None:intergenic | 30.0% | |
| TTGGAGCCAAATATATTGAA+GGG | + | chr7.4:79857974-79857993 | MS.gene56144:CDS | 30.0% | |
| TTGTGGTTTCAAAACATGTA+TGG | - | chr7.4:79859463-79859482 | None:intergenic | 30.0% | |
| ! | AATTGACGTAGAACATTTTG+GGG | - | chr7.4:79859344-79859363 | None:intergenic | 30.0% |
| ! | CCCTTTTACTATGTAAGATT+GGG | + | chr7.4:79858521-79858540 | MS.gene56144:intron | 30.0% |
| ! | CCTTTTACTATGTAAGATTG+GGG | + | chr7.4:79858522-79858541 | MS.gene56144:intron | 30.0% |
| ! | TCCCTTTTACTATGTAAGAT+TGG | + | chr7.4:79858520-79858539 | MS.gene56144:intron | 30.0% |
| ! | TTTGGAGCCAAATATATTGA+AGG | + | chr7.4:79857973-79857992 | MS.gene56144:CDS | 30.0% |
| !!! | AGCATTTTTTTTGAAGGACA+CGG | - | chr7.4:79859404-79859423 | None:intergenic | 30.0% |
| !!! | TTTTTTTTCCTTAGGGAACT+TGG | + | chr7.4:79858959-79858978 | MS.gene56144:intron | 30.0% |
| AAACACACGTCTTTAATCGT+TGG | + | chr7.4:79858897-79858916 | MS.gene56144:intron | 35.0% | |
| AACGATTAAAGACGTGTGTT+TGG | - | chr7.4:79858898-79858917 | None:intergenic | 35.0% | |
| AATTGCAGAAATTGAGTCCT+TGG | + | chr7.4:79859952-79859971 | MS.gene56144:CDS | 35.0% | |
| ACTAAATCAAACCTGCAAGT+TGG | - | chr7.4:79858703-79858722 | None:intergenic | 35.0% | |
| AGAATGAAGTTAGGATCACA+AGG | + | chr7.4:79857554-79857573 | MS.gene56144:CDS | 35.0% | |
| AGATCAAACTATGTGTAGCA+TGG | + | chr7.4:79859487-79859506 | MS.gene56144:intron | 35.0% | |
| ATATAGTCTGATTCTGCTGT+AGG | - | chr7.4:79859763-79859782 | None:intergenic | 35.0% | |
| ATTACATTTAGGCATCAGTG+AGG | - | chr7.4:79859688-79859707 | None:intergenic | 35.0% | |
| ATTGTTGCATATAGTCCTCT+TGG | + | chr7.4:79858989-79859008 | MS.gene56144:CDS | 35.0% | |
| ATTTGAGAGGGTTAATGAAC+TGG | + | chr7.4:79859781-79859800 | MS.gene56144:CDS | 35.0% | |
| CAATGAAGTTCTTCTTGGAA+AGG | + | chr7.4:79857730-79857749 | MS.gene56144:CDS | 35.0% | |
| CATAGTTTGATCTGATCTTG+TGG | - | chr7.4:79859480-79859499 | None:intergenic | 35.0% | |
| CCCCAATCTTACATAGTAAA+AGG | - | chr7.4:79858525-79858544 | None:intergenic | 35.0% | |
| CTTTCCAAGAAGAACTTCAT+TGG | - | chr7.4:79857732-79857751 | None:intergenic | 35.0% | |
| GATTGCTGAGAACTTTACAA+AGG | + | chr7.4:79859039-79859058 | MS.gene56144:CDS | 35.0% | |
| GTTGAATTGGCTACAAAGTT+TGG | + | chr7.4:79857955-79857974 | MS.gene56144:CDS | 35.0% | |
| TCCTTGGCAGATATTGTTAA+GGG | + | chr7.4:79859968-79859987 | MS.gene56144:CDS | 35.0% | |
| TCGTCTTCCAATTGAAATCA+CGG | + | chr7.4:79858107-79858126 | MS.gene56144:CDS | 35.0% | |
| TTATCTAGCATTTCTCTCTG+TGG | + | chr7.4:79858742-79858761 | MS.gene56144:intron | 35.0% | |
| TTGTTGCATATAGTCCTCTT+GGG | + | chr7.4:79858990-79859009 | MS.gene56144:CDS | 35.0% | |
| ! | ATAAGTTATAAGGTGTCAGC+TGG | - | chr7.4:79859618-79859637 | None:intergenic | 35.0% |
| ! | TAAGTTATAAGGTGTCAGCT+GGG | - | chr7.4:79859617-79859636 | None:intergenic | 35.0% |
| !! | CTTCCTGTTTAAGTTGTGTT+CGG | - | chr7.4:79859290-79859309 | None:intergenic | 35.0% |
| !!! | AGGTTTTCAGGTTGAAATCT+AGG | - | chr7.4:79859743-79859762 | None:intergenic | 35.0% |
| AATGAACTGGCTGCTAAGAA+GGG | + | chr7.4:79859794-79859813 | MS.gene56144:CDS | 40.0% | |
| ACACCGAACACAACTTAAAC+AGG | + | chr7.4:79859284-79859303 | MS.gene56144:intron | 40.0% | |
| ACCCTTAACAATATCTGCCA+AGG | - | chr7.4:79859972-79859991 | None:intergenic | 40.0% | |
| AGAAGAACTTCATTGGTGTG+AGG | - | chr7.4:79857725-79857744 | None:intergenic | 40.0% | |
| AGTGAGAGAGAAGGTTGAAT+TGG | + | chr7.4:79857942-79857961 | MS.gene56144:CDS | 40.0% | |
| ATTGTTAAGGGTGACAGAAC+CGG | + | chr7.4:79859980-79859999 | MS.gene56144:CDS | 40.0% | |
| CACACCAATGAAGTTCTTCT+TGG | + | chr7.4:79857725-79857744 | MS.gene56144:CDS | 40.0% | |
| CGAACACAACTTAAACAGGA+AGG | + | chr7.4:79859288-79859307 | MS.gene56144:intron | 40.0% | |
| CTTTCTCAATCTACGATCAG+CGG | + | chr7.4:79858352-79858371 | MS.gene56144:intron | 40.0% | |
| GAAGAACTTCATTGGTGTGA+GGG | - | chr7.4:79857724-79857743 | None:intergenic | 40.0% | |
| GAAGTTAGGATCACAAGGAA+TGG | + | chr7.4:79857559-79857578 | MS.gene56144:CDS | 40.0% | |
| GCAGTAGGAAGAATGAAGTT+AGG | + | chr7.4:79857545-79857564 | MS.gene56144:CDS | 40.0% | |
| GTATGTGTGAAATTGTGGAC+AGG | + | chr7.4:79857906-79857925 | MS.gene56144:intron | 40.0% | |
| GTCCTTGGCAGATATTGTTA+AGG | + | chr7.4:79859967-79859986 | MS.gene56144:CDS | 40.0% | |
| TAATGAACTGGCTGCTAAGA+AGG | + | chr7.4:79859793-79859812 | MS.gene56144:CDS | 40.0% | |
| TCCAATAACAGCTGTGCAAT+TGG | + | chr7.4:79858636-79858655 | MS.gene56144:CDS | 40.0% | |
| TCCAATTGCACAGCTGTTAT+TGG | - | chr7.4:79858640-79858659 | None:intergenic | 40.0% | |
| TCTCATGTTCGGTATTGTGT+TGG | + | chr7.4:79859238-79859257 | MS.gene56144:intron | 40.0% | |
| TCTTCTGATTGTTGAAGCTG+AGG | - | chr7.4:79858602-79858621 | None:intergenic | 40.0% | |
| TGATACCAGATTGTATGGCA+TGG | - | chr7.4:79857673-79857692 | None:intergenic | 40.0% | |
| TTCCAATACCAAGTTCCCTA+AGG | - | chr7.4:79858970-79858989 | None:intergenic | 40.0% | |
| TTCCTTAGGGAACTTGGTAT+TGG | + | chr7.4:79858965-79858984 | MS.gene56144:intron | 40.0% | |
| ! | ATCATGTCAGGTTCAGGTTT+AGG | - | chr7.4:79857638-79857657 | None:intergenic | 40.0% |
| ! | TGATTCTGCTGTAGGTTTTC+AGG | - | chr7.4:79859755-79859774 | None:intergenic | 40.0% |
| !! | AATTGTGGACAGGCTTTAAG+AGG | + | chr7.4:79857916-79857935 | MS.gene56144:intron | 40.0% |
| !!! | TAGAACATTTTGGGGTGCTA+AGG | - | chr7.4:79859336-79859355 | None:intergenic | 40.0% |
| AAGTCACTTAGCTCGACGTT+AGG | - | chr7.4:79857865-79857884 | None:intergenic | 45.0% | |
| ACTATGGTCAAGAGATGTCG+AGG | + | chr7.4:79858666-79858685 | MS.gene56144:CDS | 45.0% | |
| AGAGCAATCATGTCAGGTTC+AGG | - | chr7.4:79857644-79857663 | None:intergenic | 45.0% | |
| AGGATATACGGAGATCACCA+CGG | - | chr7.4:79859433-79859452 | None:intergenic | 45.0% | |
| ATCCACCATGCCATACAATC+TGG | + | chr7.4:79857665-79857684 | MS.gene56144:CDS | 45.0% | |
| ATGAGCATGTCAGGTGTCTA+TGG | + | chr7.4:79857608-79857627 | MS.gene56144:CDS | 45.0% | |
| CATGGTTGTAAAGTCGTTGC+AGG | + | chr7.4:79859505-79859524 | MS.gene56144:intron | 45.0% | |
| CTTCCATGTAGGTTCCTTTC+CGG | - | chr7.4:79860002-79860021 | None:intergenic | 45.0% | |
| GTGTCAGATTCCTTCCATGT+AGG | - | chr7.4:79860013-79860032 | None:intergenic | 45.0% | |
| TAACAGCTGTGCAATTGGAG+TGG | + | chr7.4:79858641-79858660 | MS.gene56144:CDS | 45.0% | |
| TACCAGATTGTATGGCATGG+TGG | - | chr7.4:79857670-79857689 | None:intergenic | 45.0% | |
| TACTCCATCTCAGCTTGCAT+TGG | + | chr7.4:79859820-79859839 | MS.gene56144:CDS | 45.0% | |
| TGACACCGACACATAGACAT+TGG | + | chr7.4:79859179-79859198 | MS.gene56144:intron | 45.0% | |
| TGCAATTGGAGTGGTCACTA+TGG | + | chr7.4:79858650-79858669 | MS.gene56144:CDS | 45.0% | |
| TGGATGAGAGCAATCATGTC+AGG | - | chr7.4:79857650-79857669 | None:intergenic | 45.0% | |
| ! | AGCATGCTTTTCCACAAACC+TGG | - | chr7.4:79859075-79859094 | None:intergenic | 45.0% |
| ! | ATGCTTTTCCACAAACCTGG+CGG | - | chr7.4:79859072-79859091 | None:intergenic | 45.0% |
| ! | ATGTCAGGTTCAGGTTTAGG+AGG | - | chr7.4:79857635-79857654 | None:intergenic | 45.0% |
| ! | GCAGTTTTCCAAGACGAAAG+TGG | - | chr7.4:79860040-79860059 | None:intergenic | 45.0% |
| ! | GTTCTCAACTTTGGTGGTTC+CGG | - | chr7.4:79859885-79859904 | None:intergenic | 45.0% |
| ! | GTTTTCCAAGACGAAAGTGG+TGG | - | chr7.4:79860037-79860056 | None:intergenic | 45.0% |
| ! | TTCTCAACTTTGGTGGTTCC+GGG | - | chr7.4:79859884-79859903 | None:intergenic | 45.0% |
| !! | CTTTAATCGTTGGTGCTGCA+TGG | + | chr7.4:79858907-79858926 | MS.gene56144:intron | 45.0% |
| !! | GTTTGGTGTCAAACACGTGT+TGG | - | chr7.4:79858881-79858900 | None:intergenic | 45.0% |
| AAGAGGAGGAGTGAGAGAGA+AGG | + | chr7.4:79857933-79857952 | MS.gene56144:CDS | 50.0% | |
| ACACTCCACCACTTTCGTCT+TGG | + | chr7.4:79860029-79860048 | MS.gene56144:CDS | 50.0% | |
| CAAGCTTCTCTCACGTAAGC+TGG | - | chr7.4:79858021-79858040 | None:intergenic | 50.0% | |
| CATGCAACCAAGTCCTTGCA+AGG | - | chr7.4:79857591-79857610 | None:intergenic | 50.0% | |
| CATGCCAATGCAAGCTGAGA+TGG | - | chr7.4:79859827-79859846 | None:intergenic | 50.0% | |
| CGGAAAGGAACCTACATGGA+AGG | + | chr7.4:79860000-79860019 | MS.gene56144:CDS | 50.0% | |
| CTTGGTTGCATGAGCATGTC+AGG | + | chr7.4:79857599-79857618 | MS.gene56144:CDS | 50.0% | |
| GAAAAGAATCCTCGCCCAAG+AGG | - | chr7.4:79859007-79859026 | None:intergenic | 50.0% | |
| GAACCGGAAAGGAACCTACA+TGG | + | chr7.4:79859996-79860015 | MS.gene56144:CDS | 50.0% | |
| TAAGGGTGACAGAACCGGAA+AGG | + | chr7.4:79859985-79860004 | MS.gene56144:CDS | 50.0% | |
| TACAAAGGATGACTACCGCC+AGG | + | chr7.4:79859054-79859073 | MS.gene56144:CDS | 50.0% | |
| TCAATCTACGATCAGCGGCA+TGG | + | chr7.4:79858357-79858376 | MS.gene56144:intron | 50.0% | |
| TTGGCATGGCTTCATCACCA+AGG | + | chr7.4:79859839-79859858 | MS.gene56144:CDS | 50.0% | |
| ! | ACTTTGGTGGTTCCGGGTAT+CGG | - | chr7.4:79859878-79859897 | None:intergenic | 50.0% |
| ! | CATCTCAGCTTGCATTGGCA+TGG | + | chr7.4:79859825-79859844 | MS.gene56144:CDS | 50.0% |
| ! | GAAGTGTCCTTGCAAGGACT+TGG | + | chr7.4:79857581-79857600 | MS.gene56144:CDS | 50.0% |
| ! | GGGCGAGGATTCTTTTCATC+AGG | + | chr7.4:79859010-79859029 | MS.gene56144:CDS | 50.0% |
| !! | GGAATGGAAGTGTCCTTGCA+AGG | + | chr7.4:79857575-79857594 | MS.gene56144:CDS | 50.0% |
| !! | GTTCGGTGTGTGACATGTCT+CGG | - | chr7.4:79859273-79859292 | None:intergenic | 50.0% |
| !! | TGTGGACAGGCTTTAAGAGG+AGG | + | chr7.4:79857919-79857938 | MS.gene56144:intron | 50.0% |
| GATGACTACCGCCAGGTTTG+TGG | + | chr7.4:79859061-79859080 | MS.gene56144:intron | 55.0% | |
| GCATATAGTCCTCTTGGGCG+AGG | + | chr7.4:79858995-79859014 | MS.gene56144:CDS | 55.0% | |
| ! | CTTTGGTGGTTCCGGGTATC+GGG | - | chr7.4:79859877-79859896 | None:intergenic | 55.0% |
| GACGACGTGTGCCCGATACC+CGG | + | chr7.4:79859863-79859882 | MS.gene56144:CDS | 65.0% | |
| TCGGGCACACGTCGTCTCCT+TGG | - | chr7.4:79859859-79859878 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 79857539 | 79860063 | 79857539 | ID=MS.gene56144 |
| chr7.4 | mRNA | 79857539 | 79860063 | 79857539 | ID=MS.gene56144.t1;Parent=MS.gene56144 |
| chr7.4 | exon | 79857539 | 79857751 | 79857539 | ID=MS.gene56144.t1.exon1;Parent=MS.gene56144.t1 |
| chr7.4 | CDS | 79857539 | 79857751 | 79857539 | ID=cds.MS.gene56144.t1;Parent=MS.gene56144.t1 |
| chr7.4 | exon | 79857928 | 79858128 | 79857928 | ID=MS.gene56144.t1.exon2;Parent=MS.gene56144.t1 |
| chr7.4 | CDS | 79857928 | 79858128 | 79857928 | ID=cds.MS.gene56144.t1;Parent=MS.gene56144.t1 |
| chr7.4 | exon | 79858538 | 79858710 | 79858538 | ID=MS.gene56144.t1.exon3;Parent=MS.gene56144.t1 |
| chr7.4 | CDS | 79858538 | 79858710 | 79858538 | ID=cds.MS.gene56144.t1;Parent=MS.gene56144.t1 |
| chr7.4 | exon | 79858973 | 79859075 | 79858973 | ID=MS.gene56144.t1.exon4;Parent=MS.gene56144.t1 |
| chr7.4 | CDS | 79858973 | 79859075 | 79858973 | ID=cds.MS.gene56144.t1;Parent=MS.gene56144.t1 |
| chr7.4 | exon | 79859734 | 79860063 | 79859734 | ID=MS.gene56144.t1.exon5;Parent=MS.gene56144.t1 |
| chr7.4 | CDS | 79859734 | 79860063 | 79859734 | ID=cds.MS.gene56144.t1;Parent=MS.gene56144.t1 |
| Gene Sequence |
| Protein sequence |
