Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022153.t1 | XP_003621701.1 | 95.3 | 338 | 16 | 0 | 1 | 338 | 1 | 338 | 1.60E-187 | 665.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022153.t1 | Q7XT99 | 77.1 | 341 | 73 | 2 | 2 | 337 | 9 | 349 | 4.0e-155 | 548.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022153.t1 | A2Q5B6 | 95.3 | 338 | 16 | 0 | 1 | 338 | 1 | 338 | 1.1e-187 | 665.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022153.t1 | MTR_7g021850 | 95.266 | 338 | 16 | 0 | 1 | 338 | 1 | 338 | 0.0 | 677 |
| MS.gene022153.t1 | MTR_7g021680 | 87.059 | 340 | 42 | 2 | 1 | 339 | 1 | 339 | 0.0 | 619 |
| MS.gene022153.t1 | MTR_7g021820 | 87.059 | 340 | 42 | 2 | 1 | 339 | 1 | 339 | 0.0 | 619 |
| MS.gene022153.t1 | MTR_1g102750 | 57.738 | 336 | 134 | 5 | 4 | 332 | 5 | 339 | 1.05e-135 | 389 |
| MS.gene022153.t1 | MTR_7g114970 | 57.396 | 338 | 136 | 5 | 4 | 334 | 7 | 343 | 1.67e-134 | 386 |
| MS.gene022153.t1 | MTR_7g114980 | 56.973 | 337 | 134 | 5 | 6 | 332 | 13 | 348 | 2.95e-133 | 384 |
| MS.gene022153.t1 | MTR_7g114990 | 56.325 | 332 | 136 | 6 | 7 | 332 | 16 | 344 | 3.30e-132 | 381 |
| MS.gene022153.t1 | MTR_7g114970 | 61.071 | 280 | 106 | 3 | 4 | 281 | 7 | 285 | 6.07e-121 | 350 |
| MS.gene022153.t1 | MTR_1g102750 | 60.638 | 282 | 108 | 3 | 4 | 283 | 5 | 285 | 6.46e-121 | 350 |
| MS.gene022153.t1 | MTR_7g115010 | 52.695 | 334 | 134 | 5 | 7 | 332 | 12 | 329 | 4.87e-120 | 349 |
| MS.gene022153.t1 | MTR_7g114970 | 60.932 | 279 | 106 | 3 | 4 | 280 | 7 | 284 | 6.11e-120 | 347 |
| MS.gene022153.t1 | MTR_7g114980 | 60.142 | 281 | 106 | 3 | 6 | 281 | 13 | 292 | 3.73e-118 | 343 |
| MS.gene022153.t1 | MTR_7g114970 | 60.246 | 244 | 90 | 4 | 94 | 331 | 4 | 246 | 2.81e-99 | 293 |
| MS.gene022153.t1 | MTR_7g021825 | 89.041 | 146 | 16 | 0 | 158 | 303 | 15 | 160 | 3.93e-97 | 285 |
| MS.gene022153.t1 | MTR_7g114970 | 63.402 | 194 | 70 | 1 | 6 | 198 | 9 | 202 | 5.02e-86 | 258 |
| MS.gene022153.t1 | MTR_7g114970 | 59.799 | 199 | 73 | 4 | 139 | 331 | 1 | 198 | 2.06e-76 | 233 |
| MS.gene022153.t1 | MTR_7g021670 | 85.496 | 131 | 18 | 1 | 1 | 131 | 1 | 130 | 5.52e-76 | 234 |
| MS.gene022153.t1 | MTR_7g021670 | 81.308 | 107 | 19 | 1 | 232 | 337 | 145 | 251 | 3.31e-56 | 183 |
| MS.gene022153.t1 | MTR_7g021685 | 89.855 | 69 | 7 | 0 | 1 | 69 | 1 | 69 | 1.29e-39 | 136 |
| MS.gene022153.t1 | MTR_1g102740 | 53.333 | 105 | 44 | 2 | 233 | 332 | 3 | 107 | 2.28e-31 | 114 |
| MS.gene022153.t1 | MTR_3g449790 | 29.446 | 343 | 186 | 11 | 6 | 315 | 37 | 356 | 5.47e-30 | 117 |
| MS.gene022153.t1 | MTR_3g449790 | 28.863 | 343 | 182 | 11 | 6 | 315 | 37 | 350 | 1.36e-29 | 116 |
| MS.gene022153.t1 | MTR_1g042730 | 27.327 | 333 | 191 | 12 | 8 | 296 | 65 | 390 | 5.29e-22 | 96.3 |
| MS.gene022153.t1 | MTR_3g092140 | 27.181 | 298 | 174 | 12 | 38 | 311 | 71 | 349 | 3.51e-21 | 94.7 |
| MS.gene022153.t1 | MTR_1g047250 | 25.857 | 321 | 209 | 10 | 9 | 310 | 6 | 316 | 3.39e-18 | 84.3 |
| MS.gene022153.t1 | MTR_4g092750 | 30.093 | 216 | 137 | 7 | 8 | 214 | 5 | 215 | 1.33e-16 | 79.3 |
| MS.gene022153.t1 | MTR_4g092750 | 30.093 | 216 | 137 | 7 | 8 | 214 | 5 | 215 | 1.54e-16 | 79.3 |
| MS.gene022153.t1 | MTR_4g092750 | 30.093 | 216 | 137 | 7 | 8 | 214 | 5 | 215 | 2.40e-16 | 78.6 |
| MS.gene022153.t1 | MTR_8g088160 | 25.461 | 271 | 153 | 10 | 14 | 239 | 49 | 315 | 4.58e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022153.t1 | AT1G60710 | 75.740 | 338 | 79 | 2 | 4 | 338 | 7 | 344 | 0.0 | 538 |
| MS.gene022153.t1 | AT1G60730 | 75.668 | 337 | 79 | 2 | 4 | 337 | 7 | 343 | 0.0 | 535 |
| MS.gene022153.t1 | AT1G60690 | 74.041 | 339 | 85 | 2 | 4 | 339 | 7 | 345 | 0.0 | 533 |
| MS.gene022153.t1 | AT1G60680 | 74.852 | 338 | 81 | 3 | 4 | 337 | 7 | 344 | 0.0 | 524 |
| MS.gene022153.t1 | AT1G60730 | 71.429 | 357 | 79 | 3 | 4 | 337 | 7 | 363 | 0.0 | 523 |
| MS.gene022153.t1 | AT1G10810 | 70.118 | 338 | 98 | 2 | 4 | 338 | 7 | 344 | 9.68e-178 | 496 |
| MS.gene022153.t1 | AT1G60750 | 71.006 | 338 | 77 | 4 | 4 | 337 | 8 | 328 | 9.48e-175 | 488 |
| MS.gene022153.t1 | AT1G10810 | 69.373 | 271 | 80 | 2 | 71 | 338 | 22 | 292 | 1.62e-138 | 395 |
| MS.gene022153.t1 | AT1G60680 | 78.947 | 228 | 47 | 1 | 4 | 230 | 7 | 234 | 1.75e-130 | 372 |
| MS.gene022153.t1 | AT1G10810 | 73.707 | 232 | 61 | 0 | 4 | 235 | 7 | 238 | 5.82e-123 | 354 |
| MS.gene022153.t1 | AT1G60730 | 74.101 | 139 | 36 | 0 | 4 | 142 | 7 | 145 | 1.90e-71 | 220 |
| MS.gene022153.t1 | AT5G53580 | 30.000 | 290 | 160 | 11 | 46 | 311 | 80 | 350 | 2.48e-25 | 105 |
| MS.gene022153.t1 | AT1G06690 | 28.235 | 340 | 194 | 13 | 6 | 315 | 48 | 367 | 5.10e-25 | 104 |
| MS.gene022153.t1 | AT4G33670 | 26.220 | 328 | 209 | 10 | 1 | 315 | 1 | 308 | 8.20e-23 | 97.4 |
| MS.gene022153.t1 | AT1G04420 | 26.519 | 362 | 212 | 14 | 8 | 325 | 60 | 411 | 1.35e-21 | 95.1 |
| MS.gene022153.t1 | AT1G04690 | 26.861 | 309 | 195 | 10 | 8 | 297 | 5 | 301 | 3.18e-21 | 93.2 |
Find 75 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCAATTGCACAGCTGTTAT+TGG | 0.154954 | 7.3:-77898673 | None:intergenic |
| CTTCCATGTAGGTTCCTTTC+CGG | 0.219280 | 7.3:-77900048 | None:intergenic |
| AAATGTACCATCAGTATATT+TGG | 0.233249 | 7.3:-77898073 | None:intergenic |
| CACACCAATGAACTTCTTCT+TGG | 0.235392 | 7.3:+77897795 | MS.gene022153:CDS |
| GTTCTCAACTTTGGTGGTTC+CGG | 0.259522 | 7.3:-77899931 | None:intergenic |
| AAGAAATAATTCCAACTTGC+AGG | 0.276199 | 7.3:+77898725 | MS.gene022153:CDS |
| AGTTAGAGAGAAGGTTGAAT+TGG | 0.294606 | 7.3:+77898035 | MS.gene022153:CDS |
| GTTGAATTGGCTACAAAGTT+TGG | 0.298080 | 7.3:+77898048 | MS.gene022153:CDS |
| TTCTCAACTTTGGTGGTTCC+GGG | 0.307826 | 7.3:-77899930 | None:intergenic |
| ATGAGCATGTCTGCTTTCTA+TGG | 0.338980 | 7.3:+77897678 | MS.gene022153:CDS |
| TCCAATAACAGCTGTGCAAT+TGG | 0.363190 | 7.3:+77898672 | MS.gene022153:CDS |
| ACTTTGGTGGTTCCGGGTAT+CGG | 0.366436 | 7.3:-77899924 | None:intergenic |
| ATCATGTCAGGTTCAGGTTT+AGG | 0.367686 | 7.3:-77897705 | None:intergenic |
| CATCTAACCGTGATTTCAAT+TGG | 0.369923 | 7.3:-77898207 | None:intergenic |
| TTTCTTAGGGAACTTGGTAT+TGG | 0.374176 | 7.3:+77898999 | MS.gene022153:intron |
| AGAGCAATCATGTCAGGTTC+AGG | 0.397066 | 7.3:-77897711 | None:intergenic |
| CTTTGGTGGTTCCGGGTATC+GGG | 0.407993 | 7.3:-77899923 | None:intergenic |
| TTGATTAAAGTTCTCAACTT+TGG | 0.412299 | 7.3:-77899940 | None:intergenic |
| TAATGAACTGGCTGCTAAGA+AGG | 0.416202 | 7.3:+77899842 | MS.gene022153:CDS |
| GTCCTTGGCAGATATTGTTA+AGG | 0.418905 | 7.3:+77900016 | MS.gene022153:CDS |
| CTTTCCAAGAAGAAGTTCAT+TGG | 0.424932 | 7.3:-77897799 | None:intergenic |
| ATTTGAGAGGGTTAATGAAC+TGG | 0.426318 | 7.3:+77899830 | MS.gene022153:CDS |
| AATAGCAGAAATTGAGTCCT+TGG | 0.430915 | 7.3:+77900001 | MS.gene022153:CDS |
| ATTGTTGCATATAGTCCTCT+TGG | 0.432244 | 7.3:+77899023 | MS.gene022153:CDS |
| AATTGAGGACAGGCTTTGAA+TGG | 0.434369 | 7.3:+77898009 | MS.gene022153:intron |
| AAAAGTGACACCAGATTGTA+TGG | 0.442868 | 7.3:-77897745 | None:intergenic |
| GAATGGAGGAGTTAGAGAGA+AGG | 0.446432 | 7.3:+77898026 | MS.gene022153:CDS |
| CATGCAACCAAGTCCTTGTA+AGG | 0.458876 | 7.3:-77897658 | None:intergenic |
| ACACTCCACCACTTTCGTCT+TGG | 0.460340 | 7.3:+77900078 | MS.gene022153:CDS |
| TCCTTGGCAGATATTGTTAA+GGG | 0.464128 | 7.3:+77900017 | MS.gene022153:CDS |
| ACAGTAGGAAGAATGAAGTT+AGG | 0.469331 | 7.3:+77897615 | MS.gene022153:CDS |
| CAAGCTTCTCTCACAAAAGC+TGG | 0.470939 | 7.3:-77898111 | None:intergenic |
| ATTGTTAAGGGTGACAGAAC+CGG | 0.471059 | 7.3:+77900029 | MS.gene022153:CDS |
| ATTAAAGTTCTCAACTTTGG+TGG | 0.473185 | 7.3:-77899937 | None:intergenic |
| ATTCACCATGCCATACAATC+TGG | 0.483546 | 7.3:+77897735 | MS.gene022153:CDS |
| CATCTCAGCTTGCATTGGCA+TGG | 0.489745 | 7.3:+77899874 | MS.gene022153:CDS |
| ATATAGTCTGATTCTGCTGT+AGG | 0.498584 | 7.3:-77899809 | None:intergenic |
| TGCAATTGGAGTGGTCACTA+TGG | 0.500317 | 7.3:+77898686 | MS.gene022153:CDS |
| TTGTTGCATATAGTCCTCTT+GGG | 0.500832 | 7.3:+77899024 | MS.gene022153:CDS |
| TCGGGCACACGTCGTCTCCT+TGG | 0.501395 | 7.3:-77899905 | None:intergenic |
| CAATGAACTTCTTCTTGGAA+AGG | 0.512113 | 7.3:+77897800 | MS.gene022153:CDS |
| TACTCCATCTCAGCTTGCAT+TGG | 0.515172 | 7.3:+77899869 | MS.gene022153:CDS |
| CATGCCAATGCAAGCTGAGA+TGG | 0.529498 | 7.3:-77899873 | None:intergenic |
| GAAGTGTCCTTACAAGGACT+TGG | 0.532825 | 7.3:+77897651 | MS.gene022153:CDS |
| TCTTCTGATTGTTGAAGCTG+AGG | 0.532875 | 7.3:-77898635 | None:intergenic |
| ACTAAATCAAACCTGCAAGT+TGG | 0.537019 | 7.3:-77898736 | None:intergenic |
| GTGTCAGATTCCTTCCATGT+AGG | 0.542312 | 7.3:-77900059 | None:intergenic |
| GCATATAGTCCTCTTGGGAG+AGG | 0.543332 | 7.3:+77899029 | MS.gene022153:CDS |
| TGAATGAGAGCAATCATGTC+AGG | 0.558885 | 7.3:-77897717 | None:intergenic |
| TCGTCTTCCAATTGAAATCA+CGG | 0.559511 | 7.3:+77898200 | MS.gene022153:CDS |
| GGCATGGAAGTGTCCTTACA+AGG | 0.559704 | 7.3:+77897645 | MS.gene022153:CDS |
| GAAGTTAGGATCACAAGGCA+TGG | 0.564034 | 7.3:+77897629 | MS.gene022153:CDS |
| TGAGGACAGGCTTTGAATGG+AGG | 0.569130 | 7.3:+77898012 | MS.gene022153:intron |
| TACAAAGGATGACTACCGCC+AGG | 0.569817 | 7.3:+77899088 | MS.gene022153:CDS |
| GACGACGTGTGCCCGATACC+CGG | 0.570620 | 7.3:+77899912 | MS.gene022153:CDS |
| GAACCGGAAAGGAACCTACA+TGG | 0.581675 | 7.3:+77900045 | MS.gene022153:CDS |
| AGAATCAGACTATATTTGAG+AGG | 0.585843 | 7.3:+77899817 | MS.gene022153:CDS |
| AATGAACTGGCTGCTAAGAA+GGG | 0.592584 | 7.3:+77899843 | MS.gene022153:CDS |
| CTGAGAACAATGGCAACAGT+AGG | 0.598309 | 7.3:+77897600 | None:intergenic |
| GAATCAGACTATATTTGAGA+GGG | 0.604511 | 7.3:+77899818 | MS.gene022153:CDS |
| CGGAAAGGAACCTACATGGA+AGG | 0.604731 | 7.3:+77900049 | MS.gene022153:CDS |
| GAGAACTTTAATCAAAACAT+CGG | 0.608267 | 7.3:+77899948 | MS.gene022153:CDS |
| ACCCTTAACAATATCTGCCA+AGG | 0.610315 | 7.3:-77900018 | None:intergenic |
| ACTATGGTCAAGAGATGTTG+AGG | 0.614034 | 7.3:+77898702 | MS.gene022153:CDS |
| TTTGGAGCCAAATATACTGA+TGG | 0.623125 | 7.3:+77898066 | MS.gene022153:CDS |
| GAAAAGAATCCTCTCCCAAG+AGG | 0.625633 | 7.3:-77899038 | None:intergenic |
| GATTGCTGAGAACTTTACAA+AGG | 0.626430 | 7.3:+77899073 | MS.gene022153:CDS |
| TAAGGGTGACAGAACCGGAA+AGG | 0.631823 | 7.3:+77900034 | MS.gene022153:CDS |
| TTTGTGAGAGAAGCTTGTGA+GGG | 0.633898 | 7.3:+77898117 | MS.gene022153:CDS |
| AGAATGAAGTTAGGATCACA+AGG | 0.646380 | 7.3:+77897624 | MS.gene022153:CDS |
| TAACAGCTGTGCAATTGGAG+TGG | 0.661184 | 7.3:+77898677 | MS.gene022153:CDS |
| AGAAGAAGTTCATTGGTGTG+AGG | 0.680165 | 7.3:-77897792 | None:intergenic |
| TTGGCATGGCTTCATCACCA+AGG | 0.693380 | 7.3:+77899888 | MS.gene022153:CDS |
| TGACACCAGATTGTATGGCA+TGG | 0.709987 | 7.3:-77897740 | None:intergenic |
| GATGGTACATTTGAGATCTG+TGG | 0.711076 | 7.3:+77898084 | MS.gene022153:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGACTATAAAATTTTATATT+AGG | - | chr7.3:77897845-77897864 | None:intergenic | 10.0% |
| !! | AAGCATGAATAATTATTAAT+AGG | - | chr7.3:77899425-77899444 | None:intergenic | 15.0% |
| !! | ATTTACCTAAAATTAATGTT+TGG | + | chr7.3:77898334-77898353 | MS.gene022153:intron | 15.0% |
| !! | TATAAAAATGTGTTTCAATA+TGG | - | chr7.3:77898315-77898334 | None:intergenic | 15.0% |
| !!! | AAAATAAGCATTTTTTTTGA+AGG | - | chr7.3:77899459-77899478 | None:intergenic | 15.0% |
| !!! | AAAATTCTTTGATTTGATTT+TGG | + | chr7.3:77898236-77898255 | MS.gene022153:intron | 15.0% |
| !!! | ACATTGATTAATAAGTTATA+AGG | - | chr7.3:77899677-77899696 | None:intergenic | 15.0% |
| !!! | AGTTATGATTTTTTTTCTTA+GGG | + | chr7.3:77898986-77899005 | MS.gene022153:intron | 15.0% |
| !!! | TAGTTAAAATAGAACATTTT+GGG | - | chr7.3:77899379-77899398 | None:intergenic | 15.0% |
| !!! | TTTATCCAAACATTAATTTT+AGG | - | chr7.3:77898342-77898361 | None:intergenic | 15.0% |
| !! | AAAAAAAATCATAACTCATG+AGG | - | chr7.3:77898982-77899001 | None:intergenic | 20.0% |
| !! | ACGATTGTAATTTAAGAAAA+TGG | + | chr7.3:77898845-77898864 | MS.gene022153:intron | 20.0% |
| !! | ATAGATTTCATTCAAGATAA+GGG | + | chr7.3:77898392-77898411 | MS.gene022153:intron | 20.0% |
| !! | ATCTATATAGTTCATATCAA+AGG | + | chr7.3:77899585-77899604 | MS.gene022153:intron | 20.0% |
| !! | TATAGATTTCATTCAAGATA+AGG | + | chr7.3:77898391-77898410 | MS.gene022153:intron | 20.0% |
| !! | TTAAAATTGCAATGATATGA+AGG | + | chr7.3:77898808-77898827 | MS.gene022153:intron | 20.0% |
| !! | TTATTAATCAATGTACATCA+GGG | + | chr7.3:77899683-77899702 | MS.gene022153:intron | 20.0% |
| !!! | AGTTAAAATAGAACATTTTG+GGG | - | chr7.3:77899378-77899397 | None:intergenic | 20.0% |
| !!! | CAATCTAAGATATATATAAC+TGG | + | chr7.3:77898509-77898528 | MS.gene022153:intron | 20.0% |
| !!! | CTAGTTAAAATAGAACATTT+TGG | - | chr7.3:77899380-77899399 | None:intergenic | 20.0% |
| !!! | GAGTTATGATTTTTTTTCTT+AGG | + | chr7.3:77898985-77899004 | MS.gene022153:intron | 20.0% |
| !!! | TAATTAATGCTATTTTAGGA+AGG | - | chr7.3:77898453-77898472 | None:intergenic | 20.0% |
| ! | AAATGTACCATCAGTATATT+TGG | - | chr7.3:77898076-77898095 | None:intergenic | 25.0% |
| ! | AACTAACAAGTATGAAATAC+TGG | + | chr7.3:77899176-77899195 | MS.gene022153:intron | 25.0% |
| ! | ATAGTTGTAAAACAGATATC+TGG | - | chr7.3:77898479-77898498 | None:intergenic | 25.0% |
| ! | CTTAAAAAACTAGTTGAAGA+GGG | + | chr7.3:77898583-77898602 | MS.gene022153:CDS | 25.0% |
| ! | CTTATTAATCAATGTACATC+AGG | + | chr7.3:77899682-77899701 | MS.gene022153:intron | 25.0% |
| ! | GAGAACTTTAATCAAAACAT+CGG | + | chr7.3:77899948-77899967 | MS.gene022153:CDS | 25.0% |
| ! | GAGGGAAAAATAAAATACAT+TGG | + | chr7.3:77898601-77898620 | MS.gene022153:CDS | 25.0% |
| ! | TTGAATGTACTTACATGTAT+TGG | + | chr7.3:77898874-77898893 | MS.gene022153:intron | 25.0% |
| ! | TTGATTAAAGTTCTCAACTT+TGG | - | chr7.3:77899943-77899962 | None:intergenic | 25.0% |
| !!! | AAAAAAATGCTTATTTTCCG+TGG | + | chr7.3:77899462-77899481 | MS.gene022153:intron | 25.0% |
| !!! | ATTTTTTTTCTTAGGGAACT+TGG | + | chr7.3:77898993-77899012 | MS.gene022153:intron | 25.0% |
| !!! | GTGCTAATTAATGCTATTTT+AGG | - | chr7.3:77898457-77898476 | None:intergenic | 25.0% |
| AAAACATGTATGGTATAGTG+AGG | - | chr7.3:77899502-77899521 | None:intergenic | 30.0% | |
| AAACACACGTCTTTAATCAT+TGG | + | chr7.3:77898933-77898952 | MS.gene022153:intron | 30.0% | |
| AAATTGAGTACCATAAGCAT+AGG | + | chr7.3:77898265-77898284 | MS.gene022153:intron | 30.0% | |
| AAGAAATAATTCCAACTTGC+AGG | + | chr7.3:77898725-77898744 | MS.gene022153:CDS | 30.0% | |
| AATGATTAAAGACGTGTGTT+TGG | - | chr7.3:77898934-77898953 | None:intergenic | 30.0% | |
| AGAATCAGACTATATTTGAG+AGG | + | chr7.3:77899817-77899836 | MS.gene022153:CDS | 30.0% | |
| ATTAAAGTTCTCAACTTTGG+TGG | - | chr7.3:77899940-77899959 | None:intergenic | 30.0% | |
| ATTATATTTAGGCATCAGTG+AGG | - | chr7.3:77899737-77899756 | None:intergenic | 30.0% | |
| ATTGAATGCAATCTCATGTT+CGG | + | chr7.3:77899261-77899280 | MS.gene022153:intron | 30.0% | |
| ATTTCTACTACGCTATGTAA+AGG | - | chr7.3:77897967-77897986 | None:intergenic | 30.0% | |
| CCCAATCTTACATAGTAAAA+GGG | - | chr7.3:77898560-77898579 | None:intergenic | 30.0% | |
| GAATCAGACTATATTTGAGA+GGG | + | chr7.3:77899818-77899837 | MS.gene022153:CDS | 30.0% | |
| GCTTAAAAAACTAGTTGAAG+AGG | + | chr7.3:77898582-77898601 | MS.gene022153:CDS | 30.0% | |
| TATGGTATAGTGAGGATATA+CGG | - | chr7.3:77899494-77899513 | None:intergenic | 30.0% | |
| TATTACCAATGTCTATGTGT+CGG | - | chr7.3:77899221-77899240 | None:intergenic | 30.0% | |
| TATTAGGAGTTAAGAGAAAG+TGG | - | chr7.3:77897829-77897848 | None:intergenic | 30.0% | |
| TTGTGGTTTCAAAACATGTA+TGG | - | chr7.3:77899512-77899531 | None:intergenic | 30.0% | |
| ! | CCCTTTTACTATGTAAGATT+GGG | + | chr7.3:77898557-77898576 | MS.gene022153:intron | 30.0% |
| ! | CCTTTTACTATGTAAGATTG+GGG | + | chr7.3:77898558-77898577 | MS.gene022153:intron | 30.0% |
| ! | CTTGATACTTCTGACTTTTA+TGG | + | chr7.3:77897768-77897787 | MS.gene022153:CDS | 30.0% |
| ! | TCCCTTTTACTATGTAAGAT+TGG | + | chr7.3:77898556-77898575 | MS.gene022153:intron | 30.0% |
| !!! | AGCATTTTTTTTGAAGGACA+CGG | - | chr7.3:77899453-77899472 | None:intergenic | 30.0% |
| AAAAGTGACACCAGATTGTA+TGG | - | chr7.3:77897748-77897767 | None:intergenic | 35.0% | |
| AAATCACTTAGCTCGATGTT+AGG | - | chr7.3:77897939-77897958 | None:intergenic | 35.0% | |
| AATAGCAGAAATTGAGTCCT+TGG | + | chr7.3:77900001-77900020 | MS.gene022153:CDS | 35.0% | |
| AATGTGTCTGTGTGAAATTG+AGG | + | chr7.3:77897994-77898013 | MS.gene022153:intron | 35.0% | |
| ACAGTAGGAAGAATGAAGTT+AGG | + | chr7.3:77897615-77897634 | MS.gene022153:CDS | 35.0% | |
| ACTAAATCAAACCTGCAAGT+TGG | - | chr7.3:77898739-77898758 | None:intergenic | 35.0% | |
| AGAATGAAGTTAGGATCACA+AGG | + | chr7.3:77897624-77897643 | MS.gene022153:CDS | 35.0% | |
| AGATCAAACTATGTGTAGCA+TGG | + | chr7.3:77899536-77899555 | MS.gene022153:intron | 35.0% | |
| AGTTAGAGAGAAGGTTGAAT+TGG | + | chr7.3:77898035-77898054 | MS.gene022153:CDS | 35.0% | |
| ATATAGTCTGATTCTGCTGT+AGG | - | chr7.3:77899812-77899831 | None:intergenic | 35.0% | |
| ATTGTTGCATATAGTCCTCT+TGG | + | chr7.3:77899023-77899042 | MS.gene022153:CDS | 35.0% | |
| ATTTGAGAGGGTTAATGAAC+TGG | + | chr7.3:77899830-77899849 | MS.gene022153:CDS | 35.0% | |
| CAATGAACTTCTTCTTGGAA+AGG | + | chr7.3:77897800-77897819 | MS.gene022153:CDS | 35.0% | |
| CATAGTTTGATCTGATCTTG+TGG | - | chr7.3:77899529-77899548 | None:intergenic | 35.0% | |
| CATCTAACCGTGATTTCAAT+TGG | - | chr7.3:77898210-77898229 | None:intergenic | 35.0% | |
| CCCCAATCTTACATAGTAAA+AGG | - | chr7.3:77898561-77898580 | None:intergenic | 35.0% | |
| CTGAAACAAACCTATGCTTA+TGG | - | chr7.3:77898278-77898297 | None:intergenic | 35.0% | |
| CTTTCCAAGAAGAAGTTCAT+TGG | - | chr7.3:77897802-77897821 | None:intergenic | 35.0% | |
| GATTGCTGAGAACTTTACAA+AGG | + | chr7.3:77899073-77899092 | MS.gene022153:CDS | 35.0% | |
| GTTGAATTGGCTACAAAGTT+TGG | + | chr7.3:77898048-77898067 | MS.gene022153:CDS | 35.0% | |
| TCCTTGGCAGATATTGTTAA+GGG | + | chr7.3:77900017-77900036 | MS.gene022153:CDS | 35.0% | |
| TCGTCTTCCAATTGAAATCA+CGG | + | chr7.3:77898200-77898219 | MS.gene022153:CDS | 35.0% | |
| TTATCTAGCATTTCTCTCTG+TGG | + | chr7.3:77898778-77898797 | MS.gene022153:intron | 35.0% | |
| TTGTTGCATATAGTCCTCTT+GGG | + | chr7.3:77899024-77899043 | MS.gene022153:CDS | 35.0% | |
| TTTCTTAGGGAACTTGGTAT+TGG | + | chr7.3:77898999-77899018 | MS.gene022153:intron | 35.0% | |
| ! | ATAAGTTATAAGGTGTCAGC+TGG | - | chr7.3:77899667-77899686 | None:intergenic | 35.0% |
| ! | TAAGTTATAAGGTGTCAGCT+GGG | - | chr7.3:77899666-77899685 | None:intergenic | 35.0% |
| ! | TTTGGAGCCAAATATACTGA+TGG | + | chr7.3:77898066-77898085 | MS.gene022153:CDS | 35.0% |
| !! | CTTCCTGTTTAAGTTGTGTT+CGG | - | chr7.3:77899324-77899343 | None:intergenic | 35.0% |
| !!! | AGGTTTTCAGGTTGAAATCT+AGG | - | chr7.3:77899792-77899811 | None:intergenic | 35.0% |
| AATGAACTGGCTGCTAAGAA+GGG | + | chr7.3:77899843-77899862 | MS.gene022153:CDS | 40.0% | |
| ACACCGAACACAACTTAAAC+AGG | + | chr7.3:77899318-77899337 | MS.gene022153:intron | 40.0% | |
| ACCCTTAACAATATCTGCCA+AGG | - | chr7.3:77900021-77900040 | None:intergenic | 40.0% | |
| ACTATGGTCAAGAGATGTTG+AGG | + | chr7.3:77898702-77898721 | MS.gene022153:CDS | 40.0% | |
| AGAAGAAGTTCATTGGTGTG+AGG | - | chr7.3:77897795-77897814 | None:intergenic | 40.0% | |
| ATGAGCATGTCTGCTTTCTA+TGG | + | chr7.3:77897678-77897697 | MS.gene022153:CDS | 40.0% | |
| ATTCACCATGCCATACAATC+TGG | + | chr7.3:77897735-77897754 | MS.gene022153:CDS | 40.0% | |
| ATTGTTAAGGGTGACAGAAC+CGG | + | chr7.3:77900029-77900048 | MS.gene022153:CDS | 40.0% | |
| CACACCAATGAACTTCTTCT+TGG | + | chr7.3:77897795-77897814 | MS.gene022153:CDS | 40.0% | |
| CGAACACAACTTAAACAGGA+AGG | + | chr7.3:77899322-77899341 | MS.gene022153:intron | 40.0% | |
| GTCCTTGGCAGATATTGTTA+AGG | + | chr7.3:77900016-77900035 | MS.gene022153:CDS | 40.0% | |
| TAAATCTACGATCAGCTGCA+TGG | + | chr7.3:77898358-77898377 | MS.gene022153:intron | 40.0% | |
| TAATGAACTGGCTGCTAAGA+AGG | + | chr7.3:77899842-77899861 | MS.gene022153:CDS | 40.0% | |
| TCCAATAACAGCTGTGCAAT+TGG | + | chr7.3:77898672-77898691 | MS.gene022153:CDS | 40.0% | |
| TCCAATTGCACAGCTGTTAT+TGG | - | chr7.3:77898676-77898695 | None:intergenic | 40.0% | |
| TCTCATGTTCGGTATTGTGT+TGG | + | chr7.3:77899272-77899291 | MS.gene022153:intron | 40.0% | |
| TCTTCTGATTGTTGAAGCTG+AGG | - | chr7.3:77898638-77898657 | None:intergenic | 40.0% | |
| TGAATGAGAGCAATCATGTC+AGG | - | chr7.3:77897720-77897739 | None:intergenic | 40.0% | |
| TTTGTGAGAGAAGCTTGTGA+GGG | + | chr7.3:77898117-77898136 | MS.gene022153:CDS | 40.0% | |
| ! | ACAGTTTTCCAAGACGAAAG+TGG | - | chr7.3:77900089-77900108 | None:intergenic | 40.0% |
| ! | ATCATGTCAGGTTCAGGTTT+AGG | - | chr7.3:77897708-77897727 | None:intergenic | 40.0% |
| ! | GATGGTACATTTGAGATCTG+TGG | + | chr7.3:77898084-77898103 | MS.gene022153:CDS | 40.0% |
| ! | TGATTCTGCTGTAGGTTTTC+AGG | - | chr7.3:77899804-77899823 | None:intergenic | 40.0% |
| ! | TTTTGTGAGAGAAGCTTGTG+AGG | + | chr7.3:77898116-77898135 | MS.gene022153:CDS | 40.0% |
| !! | AATTGAGGACAGGCTTTGAA+TGG | + | chr7.3:77898009-77898028 | MS.gene022153:intron | 40.0% |
| !!! | TAGAACATTTTGGGGTGCTA+AGG | - | chr7.3:77899370-77899389 | None:intergenic | 40.0% |
| AGAGCAATCATGTCAGGTTC+AGG | - | chr7.3:77897714-77897733 | None:intergenic | 45.0% | |
| AGGATATACGGAGATCACCA+CGG | - | chr7.3:77899482-77899501 | None:intergenic | 45.0% | |
| CAAGCTTCTCTCACAAAAGC+TGG | - | chr7.3:77898114-77898133 | None:intergenic | 45.0% | |
| CATGCAACCAAGTCCTTGTA+AGG | - | chr7.3:77897661-77897680 | None:intergenic | 45.0% | |
| CATGGTTGTAAAGTCGTTGC+AGG | + | chr7.3:77899554-77899573 | MS.gene022153:intron | 45.0% | |
| CTTCCATGTAGGTTCCTTTC+CGG | - | chr7.3:77900051-77900070 | None:intergenic | 45.0% | |
| GAAAAGAATCCTCTCCCAAG+AGG | - | chr7.3:77899041-77899060 | None:intergenic | 45.0% | |
| GAAGTTAGGATCACAAGGCA+TGG | + | chr7.3:77897629-77897648 | MS.gene022153:CDS | 45.0% | |
| GAATGGAGGAGTTAGAGAGA+AGG | + | chr7.3:77898026-77898045 | MS.gene022153:CDS | 45.0% | |
| GATCAGCTGCATGGTAAAGT+CGG | + | chr7.3:77898367-77898386 | MS.gene022153:intron | 45.0% | |
| GTCTGTGTGAAATTGAGGAC+AGG | + | chr7.3:77897999-77898018 | MS.gene022153:intron | 45.0% | |
| GTGTCAGATTCCTTCCATGT+AGG | - | chr7.3:77900062-77900081 | None:intergenic | 45.0% | |
| TAACAGCTGTGCAATTGGAG+TGG | + | chr7.3:77898677-77898696 | MS.gene022153:CDS | 45.0% | |
| TACTCCATCTCAGCTTGCAT+TGG | + | chr7.3:77899869-77899888 | MS.gene022153:CDS | 45.0% | |
| TGACACCAGATTGTATGGCA+TGG | - | chr7.3:77897743-77897762 | None:intergenic | 45.0% | |
| TGACACCGACACATAGACAT+TGG | + | chr7.3:77899213-77899232 | MS.gene022153:intron | 45.0% | |
| TGCAATTGGAGTGGTCACTA+TGG | + | chr7.3:77898686-77898705 | MS.gene022153:CDS | 45.0% | |
| ! | AGCATGCTTTTCCACAAACC+TGG | - | chr7.3:77899109-77899128 | None:intergenic | 45.0% |
| ! | ATGCTTTTCCACAAACCTGG+CGG | - | chr7.3:77899106-77899125 | None:intergenic | 45.0% |
| ! | GAAGTGTCCTTACAAGGACT+TGG | + | chr7.3:77897651-77897670 | MS.gene022153:CDS | 45.0% |
| ! | GGGAGAGGATTCTTTTCATC+AGG | + | chr7.3:77899044-77899063 | MS.gene022153:CDS | 45.0% |
| ! | GTTCTCAACTTTGGTGGTTC+CGG | - | chr7.3:77899934-77899953 | None:intergenic | 45.0% |
| ! | GTTTTCCAAGACGAAAGTGG+TGG | - | chr7.3:77900086-77900105 | None:intergenic | 45.0% |
| ! | TTCTCAACTTTGGTGGTTCC+GGG | - | chr7.3:77899933-77899952 | None:intergenic | 45.0% |
| !! | GTTTGGTGTCAAACACGTGT+TGG | - | chr7.3:77898917-77898936 | None:intergenic | 45.0% |
| !! | ACAAATATAATATTATATTT+AGG | - | chr7.3:77899748-77899767 | None:intergenic | 5.0% |
| ACACTCCACCACTTTCGTCT+TGG | + | chr7.3:77900078-77900097 | MS.gene022153:CDS | 50.0% | |
| CATGCCAATGCAAGCTGAGA+TGG | - | chr7.3:77899876-77899895 | None:intergenic | 50.0% | |
| CGGAAAGGAACCTACATGGA+AGG | + | chr7.3:77900049-77900068 | MS.gene022153:CDS | 50.0% | |
| GAACCGGAAAGGAACCTACA+TGG | + | chr7.3:77900045-77900064 | MS.gene022153:CDS | 50.0% | |
| GCATATAGTCCTCTTGGGAG+AGG | + | chr7.3:77899029-77899048 | MS.gene022153:CDS | 50.0% | |
| TAAGGGTGACAGAACCGGAA+AGG | + | chr7.3:77900034-77900053 | MS.gene022153:CDS | 50.0% | |
| TACAAAGGATGACTACCGCC+AGG | + | chr7.3:77899088-77899107 | MS.gene022153:CDS | 50.0% | |
| TTGGCATGGCTTCATCACCA+AGG | + | chr7.3:77899888-77899907 | MS.gene022153:CDS | 50.0% | |
| ! | ACTTTGGTGGTTCCGGGTAT+CGG | - | chr7.3:77899927-77899946 | None:intergenic | 50.0% |
| ! | CATCTCAGCTTGCATTGGCA+TGG | + | chr7.3:77899874-77899893 | MS.gene022153:CDS | 50.0% |
| !! | GGCATGGAAGTGTCCTTACA+AGG | + | chr7.3:77897645-77897664 | MS.gene022153:CDS | 50.0% |
| !! | GTTCGGTGTGTGACATGTCT+CGG | - | chr7.3:77899307-77899326 | None:intergenic | 50.0% |
| !! | TGAGGACAGGCTTTGAATGG+AGG | + | chr7.3:77898012-77898031 | MS.gene022153:intron | 50.0% |
| GATGACTACCGCCAGGTTTG+TGG | + | chr7.3:77899095-77899114 | MS.gene022153:intron | 55.0% | |
| ! | CTTTGGTGGTTCCGGGTATC+GGG | - | chr7.3:77899926-77899945 | None:intergenic | 55.0% |
| GACGACGTGTGCCCGATACC+CGG | + | chr7.3:77899912-77899931 | MS.gene022153:CDS | 65.0% | |
| TCGGGCACACGTCGTCTCCT+TGG | - | chr7.3:77899908-77899927 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 77897609 | 77900112 | 77897609 | ID=MS.gene022153 |
| chr7.3 | mRNA | 77897609 | 77900112 | 77897609 | ID=MS.gene022153.t1;Parent=MS.gene022153 |
| chr7.3 | exon | 77897609 | 77897821 | 77897609 | ID=MS.gene022153.t1.exon1;Parent=MS.gene022153.t1 |
| chr7.3 | CDS | 77897609 | 77897821 | 77897609 | ID=cds.MS.gene022153.t1;Parent=MS.gene022153.t1 |
| chr7.3 | exon | 77898021 | 77898221 | 77898021 | ID=MS.gene022153.t1.exon2;Parent=MS.gene022153.t1 |
| chr7.3 | CDS | 77898021 | 77898221 | 77898021 | ID=cds.MS.gene022153.t1;Parent=MS.gene022153.t1 |
| chr7.3 | exon | 77898574 | 77898746 | 77898574 | ID=MS.gene022153.t1.exon3;Parent=MS.gene022153.t1 |
| chr7.3 | CDS | 77898574 | 77898746 | 77898574 | ID=cds.MS.gene022153.t1;Parent=MS.gene022153.t1 |
| chr7.3 | exon | 77899007 | 77899109 | 77899007 | ID=MS.gene022153.t1.exon4;Parent=MS.gene022153.t1 |
| chr7.3 | CDS | 77899007 | 77899109 | 77899007 | ID=cds.MS.gene022153.t1;Parent=MS.gene022153.t1 |
| chr7.3 | exon | 77899783 | 77900112 | 77899783 | ID=MS.gene022153.t1.exon5;Parent=MS.gene022153.t1 |
| chr7.3 | CDS | 77899783 | 77900112 | 77899783 | ID=cds.MS.gene022153.t1;Parent=MS.gene022153.t1 |
| Gene Sequence |
| Protein sequence |
