Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56146.t1 | XP_003621684.1 | 97.3 | 339 | 9 | 0 | 1 | 339 | 1 | 339 | 5.10E-194 | 686.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56146.t1 | Q7XT99 | 78.1 | 342 | 70 | 3 | 2 | 338 | 9 | 350 | 1.5e-157 | 557.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56146.t1 | A2Q5A8 | 97.3 | 339 | 9 | 0 | 1 | 339 | 1 | 339 | 3.7e-194 | 686.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56146.t1 | MTR_7g021680 | 97.345 | 339 | 9 | 0 | 1 | 339 | 1 | 339 | 0.0 | 690 |
| MS.gene56146.t1 | MTR_7g021820 | 97.345 | 339 | 9 | 0 | 1 | 339 | 1 | 339 | 0.0 | 690 |
| MS.gene56146.t1 | MTR_7g021850 | 87.870 | 338 | 39 | 2 | 1 | 337 | 1 | 337 | 0.0 | 624 |
| MS.gene56146.t1 | MTR_7g114990 | 58.133 | 332 | 130 | 6 | 7 | 332 | 16 | 344 | 1.17e-138 | 397 |
| MS.gene56146.t1 | MTR_7g114980 | 58.754 | 337 | 128 | 6 | 6 | 332 | 13 | 348 | 2.35e-138 | 396 |
| MS.gene56146.t1 | MTR_1g102750 | 56.548 | 336 | 138 | 6 | 4 | 332 | 5 | 339 | 3.70e-132 | 380 |
| MS.gene56146.t1 | MTR_7g114970 | 56.598 | 341 | 134 | 7 | 4 | 334 | 7 | 343 | 1.16e-130 | 377 |
| MS.gene56146.t1 | MTR_7g115010 | 53.293 | 334 | 132 | 6 | 7 | 332 | 12 | 329 | 2.56e-122 | 355 |
| MS.gene56146.t1 | MTR_7g114980 | 61.210 | 281 | 102 | 4 | 6 | 280 | 13 | 292 | 6.86e-120 | 347 |
| MS.gene56146.t1 | MTR_7g114970 | 60.791 | 278 | 105 | 4 | 6 | 280 | 9 | 285 | 2.57e-118 | 343 |
| MS.gene56146.t1 | MTR_1g102750 | 59.220 | 282 | 111 | 4 | 4 | 282 | 5 | 285 | 2.70e-117 | 341 |
| MS.gene56146.t1 | MTR_7g114970 | 60.215 | 279 | 107 | 4 | 4 | 279 | 7 | 284 | 4.42e-117 | 340 |
| MS.gene56146.t1 | MTR_7g021825 | 93.836 | 146 | 9 | 0 | 157 | 302 | 15 | 160 | 1.18e-99 | 291 |
| MS.gene56146.t1 | MTR_7g114970 | 58.000 | 250 | 93 | 4 | 93 | 334 | 4 | 249 | 5.54e-96 | 285 |
| MS.gene56146.t1 | MTR_7g021670 | 93.846 | 130 | 8 | 0 | 1 | 130 | 1 | 130 | 1.22e-85 | 259 |
| MS.gene56146.t1 | MTR_7g021670 | 87.963 | 108 | 13 | 0 | 231 | 338 | 145 | 252 | 1.79e-63 | 202 |
| MS.gene56146.t1 | MTR_7g114970 | 64.433 | 194 | 67 | 2 | 6 | 197 | 9 | 202 | 1.31e-85 | 257 |
| MS.gene56146.t1 | MTR_7g114970 | 56.585 | 205 | 77 | 4 | 138 | 334 | 1 | 201 | 3.66e-73 | 225 |
| MS.gene56146.t1 | MTR_7g021685 | 91.304 | 69 | 6 | 0 | 1 | 69 | 1 | 69 | 2.60e-41 | 140 |
| MS.gene56146.t1 | MTR_3g449790 | 32.840 | 338 | 180 | 12 | 6 | 314 | 37 | 356 | 5.36e-34 | 128 |
| MS.gene56146.t1 | MTR_3g449790 | 32.249 | 338 | 176 | 12 | 6 | 314 | 37 | 350 | 1.46e-33 | 127 |
| MS.gene56146.t1 | MTR_1g102740 | 47.222 | 108 | 47 | 2 | 232 | 332 | 3 | 107 | 5.16e-28 | 105 |
| MS.gene56146.t1 | MTR_3g092140 | 27.365 | 296 | 175 | 12 | 38 | 310 | 71 | 349 | 1.01e-21 | 96.3 |
| MS.gene56146.t1 | MTR_1g047250 | 26.911 | 327 | 205 | 11 | 8 | 312 | 5 | 319 | 1.80e-21 | 93.6 |
| MS.gene56146.t1 | MTR_1g042730 | 28.653 | 349 | 196 | 13 | 8 | 309 | 65 | 407 | 2.29e-21 | 94.4 |
| MS.gene56146.t1 | MTR_4g092750 | 30.556 | 216 | 135 | 7 | 8 | 213 | 5 | 215 | 8.11e-17 | 80.1 |
| MS.gene56146.t1 | MTR_4g092750 | 30.556 | 216 | 135 | 7 | 8 | 213 | 5 | 215 | 8.18e-17 | 80.5 |
| MS.gene56146.t1 | MTR_4g092750 | 30.556 | 216 | 135 | 7 | 8 | 213 | 5 | 215 | 1.18e-16 | 79.7 |
| MS.gene56146.t1 | MTR_8g088160 | 25.735 | 272 | 152 | 10 | 13 | 238 | 48 | 315 | 1.16e-12 | 68.2 |
| MS.gene56146.t1 | MTR_4g036845 | 25.231 | 325 | 169 | 13 | 13 | 311 | 11 | 287 | 2.86e-11 | 63.9 |
| MS.gene56146.t1 | MTR_6g073110 | 23.529 | 340 | 202 | 11 | 11 | 329 | 12 | 314 | 4.18e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56146.t1 | AT1G60730 | 77.219 | 338 | 74 | 2 | 4 | 338 | 7 | 344 | 0.0 | 541 |
| MS.gene56146.t1 | AT1G60710 | 76.627 | 338 | 76 | 2 | 4 | 338 | 7 | 344 | 0.0 | 540 |
| MS.gene56146.t1 | AT1G60690 | 74.041 | 339 | 85 | 2 | 4 | 339 | 7 | 345 | 0.0 | 531 |
| MS.gene56146.t1 | AT1G60730 | 72.905 | 358 | 74 | 3 | 4 | 338 | 7 | 364 | 0.0 | 530 |
| MS.gene56146.t1 | AT1G60680 | 75.221 | 339 | 80 | 3 | 4 | 338 | 7 | 345 | 0.0 | 526 |
| MS.gene56146.t1 | AT1G10810 | 73.077 | 338 | 88 | 2 | 4 | 338 | 7 | 344 | 0.0 | 508 |
| MS.gene56146.t1 | AT1G60750 | 72.861 | 339 | 71 | 4 | 4 | 338 | 8 | 329 | 2.31e-179 | 499 |
| MS.gene56146.t1 | AT1G10810 | 72.426 | 272 | 72 | 2 | 70 | 338 | 21 | 292 | 3.45e-143 | 406 |
| MS.gene56146.t1 | AT1G60680 | 78.070 | 228 | 48 | 2 | 4 | 229 | 7 | 234 | 4.84e-128 | 366 |
| MS.gene56146.t1 | AT1G10810 | 75.431 | 232 | 56 | 1 | 4 | 234 | 7 | 238 | 8.32e-124 | 356 |
| MS.gene56146.t1 | AT1G60730 | 74.101 | 139 | 35 | 1 | 4 | 141 | 7 | 145 | 8.40e-71 | 218 |
| MS.gene56146.t1 | AT1G06690 | 29.254 | 335 | 196 | 11 | 6 | 314 | 48 | 367 | 5.91e-28 | 112 |
| MS.gene56146.t1 | AT5G53580 | 31.271 | 291 | 154 | 12 | 46 | 310 | 80 | 350 | 1.52e-26 | 108 |
| MS.gene56146.t1 | AT1G04690 | 27.832 | 309 | 191 | 10 | 8 | 296 | 5 | 301 | 1.68e-24 | 102 |
| MS.gene56146.t1 | AT4G33670 | 26.220 | 328 | 208 | 10 | 1 | 314 | 1 | 308 | 5.66e-22 | 95.1 |
| MS.gene56146.t1 | AT1G04420 | 26.479 | 355 | 206 | 14 | 8 | 314 | 60 | 407 | 1.07e-20 | 92.4 |
Find 77 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGATTCAAGTTCTCAATTT+TGG | 0.179947 | 7.4:-79898928 | None:intergenic |
| TCCAACTGCACAGCTGTTAT+TGG | 0.217840 | 7.4:-79897086 | None:intergenic |
| CACACCAATGAAGTTCTTCT+TGG | 0.223012 | 7.4:+79896421 | MS.gene56146:CDS |
| CTTGATACTTCTGATATCTA+TGG | 0.267132 | 7.4:+79896394 | MS.gene56146:CDS |
| ATACTCCACCACTCTCTTCT+TGG | 0.280266 | 7.4:+79899069 | MS.gene56146:CDS |
| GTTGAATTGGCTACTAAGTT+TGG | 0.296790 | 7.4:+79896617 | MS.gene56146:CDS |
| TTTCTTAGGGAACTTGGTAT+TGG | 0.337507 | 7.4:+79897576 | MS.gene56146:intron |
| ATGAGCATGTCTGCTTTCTA+TGG | 0.353634 | 7.4:+79896304 | MS.gene56146:CDS |
| ATTTGACAAAGTTAATGAAT+TGG | 0.354570 | 7.4:+79898818 | MS.gene56146:CDS |
| GTCTTTAGCAGATGCTGTTA+AGG | 0.356223 | 7.4:+79899004 | MS.gene56146:CDS |
| AAGACGTAATTCCAACTTGC+AGG | 0.402309 | 7.4:+79897138 | MS.gene56146:CDS |
| CTTTCCAAGAAGAACTTCAT+TGG | 0.408269 | 7.4:-79896425 | None:intergenic |
| TGTGAGAGAGAAGGTTGAAT+TGG | 0.411679 | 7.4:+79896604 | MS.gene56146:CDS |
| GCTGTTAAGGGTGGTAGATA+TGG | 0.413920 | 7.4:+79899017 | MS.gene56146:CDS |
| ATTGTTGCATATAGTCCTCT+TGG | 0.416557 | 7.4:+79897600 | MS.gene56146:CDS |
| AAAAGTGATACCAGATTGTA+TGG | 0.425728 | 7.4:-79896371 | None:intergenic |
| CACCTCAGCTTGCACTAGCC+TGG | 0.427311 | 7.4:+79898862 | MS.gene56146:CDS |
| TAAACTAACACAAGAAGAAA+TGG | 0.436815 | 7.4:+79898971 | MS.gene56146:CDS |
| TCTTTAGCAGATGCTGTTAA+GGG | 0.437336 | 7.4:+79899005 | MS.gene56146:CDS |
| AGAGCAATCATGTCAGGTTC+AGG | 0.437605 | 7.4:-79896337 | None:intergenic |
| TTTGAGATCTGTGGTGATCC+AGG | 0.439708 | 7.4:+79896662 | MS.gene56146:CDS |
| ATATAGTCTGATTCTGCTGC+AGG | 0.450000 | 7.4:-79898797 | None:intergenic |
| CATGCAACCAAGTCCTTGTA+AGG | 0.458876 | 7.4:-79896284 | None:intergenic |
| AAACAAACCGTGACTTCAAT+CGG | 0.459711 | 7.4:-79896776 | None:intergenic |
| TAATGAATTGGCTACAAAGA+AGG | 0.471421 | 7.4:+79898830 | MS.gene56146:CDS |
| ATTCATCATGCCATACAATC+TGG | 0.474802 | 7.4:+79896361 | MS.gene56146:CDS |
| ACTTGCCACAGGATGATTAC+CGG | 0.478397 | 7.4:+79897661 | MS.gene56146:CDS |
| TCCAATAACAGCTGTGCAGT+TGG | 0.490955 | 7.4:+79897085 | MS.gene56146:CDS |
| ACAGTGGGAAGAATGAAGTT+AGG | 0.493900 | 7.4:+79896241 | MS.gene56146:CDS |
| TTTGAAGGGTGTGAGAGAGA+AGG | 0.495752 | 7.4:+79896595 | MS.gene56146:CDS |
| CAAGCTTCTCTCACATAACC+TGG | 0.499607 | 7.4:-79896680 | None:intergenic |
| ATCATGTCAGGTTCAGGCTT+AGG | 0.505151 | 7.4:-79896331 | None:intergenic |
| TCTTCTGATTGTTGCAGCTG+AGG | 0.505290 | 7.4:-79897048 | None:intergenic |
| TTGTTGCATATAGTCCTCTT+GGG | 0.507233 | 7.4:+79897601 | MS.gene56146:CDS |
| CTTAAGAAACTTGTTGAAGA+GGG | 0.519358 | 7.4:+79896996 | MS.gene56146:CDS |
| AAAGACGTGTGCCCGATACC+TGG | 0.522635 | 7.4:+79898900 | MS.gene56146:CDS |
| CAATGAAGTTCTTCTTGGAA+AGG | 0.524852 | 7.4:+79896426 | MS.gene56146:CDS |
| TTGGAGTTAGAGCTGGTGAT+GGG | 0.526074 | 7.4:+79896636 | MS.gene56146:CDS |
| GCATATAGTCCTCTTGGGCG+AGG | 0.531821 | 7.4:+79897606 | MS.gene56146:CDS |
| GAAGTGTCCTTACAAGGACT+TGG | 0.532825 | 7.4:+79896277 | MS.gene56146:CDS |
| AATGAATTGGCTACAAAGAA+GGG | 0.535628 | 7.4:+79898831 | MS.gene56146:CDS |
| ACTAAGTTTGGAGTTAGAGC+TGG | 0.537266 | 7.4:+79896629 | MS.gene56146:CDS |
| CAGGCTAGTGCAAGCTGAGG+TGG | 0.541943 | 7.4:-79898861 | None:intergenic |
| TCGTCTTCCGATTGAAGTCA+CGG | 0.547953 | 7.4:+79896769 | MS.gene56146:CDS |
| TTTGGAGTTAGAGCTGGTGA+TGG | 0.548871 | 7.4:+79896635 | MS.gene56146:CDS |
| ACTAAATCACACCTGCAAGT+TGG | 0.549393 | 7.4:-79897149 | None:intergenic |
| TGAATGAGAGCAATCATGTC+AGG | 0.550550 | 7.4:-79896343 | None:intergenic |
| ATGTCAGGTTCAGGCTTAGG+AGG | 0.557823 | 7.4:-79896328 | None:intergenic |
| GGGATGGAAGTGTCCTTACA+AGG | 0.559327 | 7.4:+79896271 | MS.gene56146:CDS |
| GAAGTTAGGATCACAAGGGA+TGG | 0.564034 | 7.4:+79896255 | MS.gene56146:CDS |
| GAGAACTTGAATCAAAACAT+TGG | 0.571832 | 7.4:+79898936 | MS.gene56146:CDS |
| GAAGAACTTCATTGGTGTGA+GGG | 0.571972 | 7.4:-79896417 | None:intergenic |
| GTTAATTGACAACTTGCCAC+AGG | 0.576617 | 7.4:+79897650 | MS.gene56146:CDS |
| GCTTAAGAAACTTGTTGAAG+AGG | 0.577571 | 7.4:+79896995 | MS.gene56146:CDS |
| GTCAAAGCAATGGCAACAGT+GGG | 0.578398 | 7.4:+79896226 | None:intergenic |
| AGTCAAAGCAATGGCAACAG+TGG | 0.590506 | 7.4:+79896225 | None:intergenic |
| TATGTGAGAGAAGCTTGTGA+GGG | 0.599905 | 7.4:+79896686 | MS.gene56146:CDS |
| TAACAGCTGTGCAGTTGGAG+TGG | 0.606322 | 7.4:+79897090 | MS.gene56146:CDS |
| TTATGTGAGAGAAGCTTGTG+AGG | 0.606963 | 7.4:+79896685 | MS.gene56146:CDS |
| AAAATACATCGGTTTGTCTG+AGG | 0.609392 | 7.4:+79897025 | MS.gene56146:CDS |
| TTAAGAAACTTGTTGAAGAG+GGG | 0.610574 | 7.4:+79896997 | MS.gene56146:CDS |
| AGAATGAAGTTAGGATCACA+AGG | 0.616212 | 7.4:+79896250 | MS.gene56146:CDS |
| GCCACAGGATGATTACCGGA+AGG | 0.619947 | 7.4:+79897665 | MS.gene56146:CDS |
| AGAAGAACTTCATTGGTGTG+AGG | 0.636443 | 7.4:-79896418 | None:intergenic |
| GAAAAGAATCCTCGCCCAAG+AGG | 0.639338 | 7.4:-79897615 | None:intergenic |
| TTAGCAGATGCTGTTAAGGG+TGG | 0.639881 | 7.4:+79899008 | MS.gene56146:CDS |
| GAGGGGAAAATAAAATACAT+CGG | 0.640822 | 7.4:+79897014 | MS.gene56146:CDS |
| GCTTTCCAAGAAGAGAGTGG+TGG | 0.651055 | 7.4:-79899074 | None:intergenic |
| ACTGTGGTCAAGAGATGTCG+AGG | 0.654297 | 7.4:+79897115 | MS.gene56146:CDS |
| ATGGAGATGAGATAACTACA+TGG | 0.654930 | 7.4:+79899036 | MS.gene56146:CDS |
| ACCTTCCGGTAATCATCCTG+TGG | 0.662538 | 7.4:-79897666 | None:intergenic |
| ACAGCTTTCCAAGAAGAGAG+TGG | 0.666396 | 7.4:-79899077 | None:intergenic |
| AGCCAGGCTAGTGCAAGCTG+AGG | 0.684598 | 7.4:-79898864 | None:intergenic |
| TGCAGTTGGAGTGGTCACTG+TGG | 0.702667 | 7.4:+79897099 | MS.gene56146:CDS |
| GATGGGAAATTTGAGATCTG+TGG | 0.703407 | 7.4:+79896653 | MS.gene56146:CDS |
| CTAGCCTGGCTTCATCACCA+AGG | 0.706704 | 7.4:+79898876 | MS.gene56146:CDS |
| GAATGAAGTTAGGATCACAA+GGG | 0.757296 | 7.4:+79896251 | MS.gene56146:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTCAAATTAAATATATAGT+CGG | + | chr7.4:79897909-79897928 | MS.gene56146:intron | 10.0% |
| !!! | ATTATTTTGATATATTGATT+TGG | + | chr7.4:79896505-79896524 | MS.gene56146:intron | 10.0% |
| !! | AATCAAAAGAAAAACTAAAA+GGG | - | chr7.4:79896468-79896487 | None:intergenic | 15.0% |
| !! | ACAATTTAAACAAGTAAATT+TGG | - | chr7.4:79897852-79897871 | None:intergenic | 15.0% |
| !! | TAATCAAAAGAAAAACTAAA+AGG | - | chr7.4:79896469-79896488 | None:intergenic | 15.0% |
| !! | TACTATATAACAAAACATAA+TGG | - | chr7.4:79897181-79897200 | None:intergenic | 15.0% |
| !!! | ATTTATGATTTTCTTTCTTA+GGG | + | chr7.4:79897563-79897582 | MS.gene56146:intron | 15.0% |
| !!! | TAAGCAAAAAACAATTTTTT+AGG | + | chr7.4:79897220-79897239 | MS.gene56146:intron | 15.0% |
| !! | AGATACATTGAATAATTATC+CGG | - | chr7.4:79897284-79897303 | None:intergenic | 20.0% |
| !! | ATATATAAAATGACAATGTG+TGG | + | chr7.4:79896932-79896951 | MS.gene56146:intron | 20.0% |
| !! | ATTTATCACATGTTCTTTAA+TGG | + | chr7.4:79898301-79898320 | MS.gene56146:intron | 20.0% |
| !! | ATTTGACAAAGTTAATGAAT+TGG | + | chr7.4:79898818-79898837 | MS.gene56146:CDS | 20.0% |
| !! | TAAAGAACATGTGATAAATA+GGG | - | chr7.4:79898300-79898319 | None:intergenic | 20.0% |
| !! | TTAAAGAACATGTGATAAAT+AGG | - | chr7.4:79898301-79898320 | None:intergenic | 20.0% |
| !! | TTGAACATAATTACATATGT+TGG | + | chr7.4:79897461-79897480 | MS.gene56146:intron | 20.0% |
| !!! | AAACAATTTTTTAGGTACAT+TGG | + | chr7.4:79897228-79897247 | MS.gene56146:intron | 20.0% |
| !!! | ACCAAAAGGTATAATAAATT+AGG | - | chr7.4:79896872-79896891 | None:intergenic | 20.0% |
| !!! | ATTTATTATACCTTTTGGTT+TGG | + | chr7.4:79896873-79896892 | MS.gene56146:intron | 20.0% |
| !!! | GATTGTGAAATTTTATGAAT+AGG | + | chr7.4:79896571-79896590 | MS.gene56146:intron | 20.0% |
| !!! | GATTTATGATTTTCTTTCTT+AGG | + | chr7.4:79897562-79897581 | MS.gene56146:intron | 20.0% |
| !!! | TCCTAATTTATTATACCTTT+TGG | + | chr7.4:79896868-79896887 | MS.gene56146:intron | 20.0% |
| !!! | TTCTTTTGATTAGAATTTCT+GGG | + | chr7.4:79896477-79896496 | MS.gene56146:intron | 20.0% |
| !!! | TTTCTTTTGATTAGAATTTC+TGG | + | chr7.4:79896476-79896495 | MS.gene56146:intron | 20.0% |
| ! | AAAGAACATGTGATAAATAG+GGG | - | chr7.4:79898299-79898318 | None:intergenic | 25.0% |
| ! | AAATATTCAACCAAACCAAA+AGG | - | chr7.4:79896886-79896905 | None:intergenic | 25.0% |
| ! | AACAACTAAGAAATGTTGTA+GGG | - | chr7.4:79898090-79898109 | None:intergenic | 25.0% |
| ! | AAGCTACCAAAATCAAATTA+GGG | - | chr7.4:79896819-79896838 | None:intergenic | 25.0% |
| ! | AATATCAATGTAGAACTAAG+TGG | - | chr7.4:79898208-79898227 | None:intergenic | 25.0% |
| ! | TAAACTAACACAAGAAGAAA+TGG | + | chr7.4:79898971-79898990 | MS.gene56146:CDS | 25.0% |
| ! | TAACAACTAAGAAATGTTGT+AGG | - | chr7.4:79898091-79898110 | None:intergenic | 25.0% |
| ! | TAAGCTACCAAAATCAAATT+AGG | - | chr7.4:79896820-79896839 | None:intergenic | 25.0% |
| ! | TAGAACTAAGTGGTTAATTA+GGG | - | chr7.4:79898198-79898217 | None:intergenic | 25.0% |
| ! | TGACTTACCACAAATATTAT+GGG | + | chr7.4:79898324-79898343 | MS.gene56146:intron | 25.0% |
| ! | TTTAAATTGTGTAATGTGTG+TGG | + | chr7.4:79897862-79897881 | MS.gene56146:intron | 25.0% |
| ! | TTTAGTCCATAAAACAGTTT+GGG | + | chr7.4:79897940-79897959 | MS.gene56146:intron | 25.0% |
| !! | TGATCATATTAATCGTTTTC+AGG | + | chr7.4:79897745-79897764 | MS.gene56146:intron | 25.0% |
| !! | TTATGTGTATCCGTATTTTT+CGG | - | chr7.4:79898500-79898519 | None:intergenic | 25.0% |
| !! | TTTTAGTCCATAAAACAGTT+TGG | + | chr7.4:79897939-79897958 | MS.gene56146:intron | 25.0% |
| !! | TTTTTGCTTATAAATGTGAC+TGG | - | chr7.4:79897210-79897229 | None:intergenic | 25.0% |
| !!! | ATTTTATGAATAGGCTTTGA+AGG | + | chr7.4:79896580-79896599 | MS.gene56146:intron | 25.0% |
| !!! | TTGATTCAAGTTCTCAATTT+TGG | - | chr7.4:79898931-79898950 | None:intergenic | 25.0% |
| !!! | TTTTATGAATAGGCTTTGAA+GGG | + | chr7.4:79896581-79896600 | MS.gene56146:intron | 25.0% |
| AAAAGTGATACCAGATTGTA+TGG | - | chr7.4:79896374-79896393 | None:intergenic | 30.0% | |
| AAATTAGGGAGAACTGAAAA+GGG | - | chr7.4:79896805-79896824 | None:intergenic | 30.0% | |
| AATGAATTGGCTACAAAGAA+GGG | + | chr7.4:79898831-79898850 | MS.gene56146:CDS | 30.0% | |
| AATTATCCGGTCACATTTAT+AGG | - | chr7.4:79897271-79897290 | None:intergenic | 30.0% | |
| ACAACTAAGAAATGTTGTAG+GGG | - | chr7.4:79898089-79898108 | None:intergenic | 30.0% | |
| ACATAGTCCCATAATATTTG+TGG | - | chr7.4:79898334-79898353 | None:intergenic | 30.0% | |
| ACTTACATCATTGATCAATC+AGG | + | chr7.4:79898559-79898578 | MS.gene56146:intron | 30.0% | |
| ATCTAACCTATAAATGTGAC+CGG | + | chr7.4:79897262-79897281 | MS.gene56146:intron | 30.0% | |
| CAGAACTCTATAATACAAAC+AGG | + | chr7.4:79898016-79898035 | MS.gene56146:intron | 30.0% | |
| CATCAAGTAGTTCATTTCAT+AGG | - | chr7.4:79896910-79896929 | None:intergenic | 30.0% | |
| CTACAGAATATGGTATGTTA+TGG | - | chr7.4:79898379-79898398 | None:intergenic | 30.0% | |
| CTTACATCATTGATCAATCA+GGG | + | chr7.4:79898560-79898579 | MS.gene56146:intron | 30.0% | |
| CTTGATACTTCTGATATCTA+TGG | + | chr7.4:79896394-79896413 | MS.gene56146:CDS | 30.0% | |
| GAGAACTTGAATCAAAACAT+TGG | + | chr7.4:79898936-79898955 | MS.gene56146:CDS | 30.0% | |
| GAGGGGAAAATAAAATACAT+CGG | + | chr7.4:79897014-79897033 | MS.gene56146:CDS | 30.0% | |
| GATTGATCAATGATGTAAGT+TGG | - | chr7.4:79898559-79898578 | None:intergenic | 30.0% | |
| GGATACACATAAATCAATCA+TGG | + | chr7.4:79898508-79898527 | MS.gene56146:intron | 30.0% | |
| GTAGAACTAAGTGGTTAATT+AGG | - | chr7.4:79898199-79898218 | None:intergenic | 30.0% | |
| GTGACTTACCACAAATATTA+TGG | + | chr7.4:79898323-79898342 | MS.gene56146:intron | 30.0% | |
| TAAAATGCAGCTACAGAATA+TGG | - | chr7.4:79898389-79898408 | None:intergenic | 30.0% | |
| TAATGAATTGGCTACAAAGA+AGG | + | chr7.4:79898830-79898849 | MS.gene56146:CDS | 30.0% | |
| TCGATAAATTTGCAATGACA+TGG | + | chr7.4:79897362-79897381 | MS.gene56146:intron | 30.0% | |
| TCTTATCAAATATCTCCTCA+CGG | - | chr7.4:79898235-79898254 | None:intergenic | 30.0% | |
| TGTTTGCTTATAAATGTGAC+CGG | + | chr7.4:79897314-79897333 | MS.gene56146:intron | 30.0% | |
| ! | ATATTCTGTAGCTGCATTTT+AGG | + | chr7.4:79898388-79898407 | MS.gene56146:intron | 30.0% |
| ! | ATTTTCTTTCTTAGGGAACT+TGG | + | chr7.4:79897570-79897589 | MS.gene56146:intron | 30.0% |
| ! | TGGGTTTTCTTTGTAAGATT+GGG | + | chr7.4:79896970-79896989 | MS.gene56146:intron | 30.0% |
| !! | AGTTCTCCCTAATTTGATTT+TGG | + | chr7.4:79896810-79896829 | MS.gene56146:intron | 30.0% |
| !! | CTTAAGAAACTTGTTGAAGA+GGG | + | chr7.4:79896996-79897015 | MS.gene56146:CDS | 30.0% |
| !! | TTAAGAAACTTGTTGAAGAG+GGG | + | chr7.4:79896997-79897016 | MS.gene56146:CDS | 30.0% |
| AAACAAACCGTGACTTCAAT+CGG | - | chr7.4:79896779-79896798 | None:intergenic | 35.0% | |
| ACATTGATATTTGAACCGTG+AGG | + | chr7.4:79898217-79898236 | MS.gene56146:intron | 35.0% | |
| ACGCCTTTAATCCAAATTGT+CGG | + | chr7.4:79897510-79897529 | MS.gene56146:intron | 35.0% | |
| AGAATGAAGTTAGGATCACA+AGG | + | chr7.4:79896250-79896269 | MS.gene56146:CDS | 35.0% | |
| ATCAACACACATTGATCACA+GGG | - | chr7.4:79898043-79898062 | None:intergenic | 35.0% | |
| ATGAATGCAGCCGAAAAATA+CGG | + | chr7.4:79898487-79898506 | MS.gene56146:intron | 35.0% | |
| ATGGAGATGAGATAACTACA+TGG | + | chr7.4:79899036-79899055 | MS.gene56146:CDS | 35.0% | |
| ATTCATCATGCCATACAATC+TGG | + | chr7.4:79896361-79896380 | MS.gene56146:CDS | 35.0% | |
| ATTGTTGCATATAGTCCTCT+TGG | + | chr7.4:79897600-79897619 | MS.gene56146:CDS | 35.0% | |
| CAAATTAGGGAGAACTGAAA+AGG | - | chr7.4:79896806-79896825 | None:intergenic | 35.0% | |
| CAATGAAGTTCTTCTTGGAA+AGG | + | chr7.4:79896426-79896445 | MS.gene56146:CDS | 35.0% | |
| CCATAAAACAGTTTGGGAAT+AGG | + | chr7.4:79897946-79897965 | MS.gene56146:intron | 35.0% | |
| CTTTCCAAGAAGAACTTCAT+TGG | - | chr7.4:79896428-79896447 | None:intergenic | 35.0% | |
| GAATGAAGTTAGGATCACAA+GGG | + | chr7.4:79896251-79896270 | MS.gene56146:CDS | 35.0% | |
| GTTGAATTGGCTACTAAGTT+TGG | + | chr7.4:79896617-79896636 | MS.gene56146:CDS | 35.0% | |
| TATCAACACACATTGATCAC+AGG | - | chr7.4:79898044-79898063 | None:intergenic | 35.0% | |
| TCTTTAGCAGATGCTGTTAA+GGG | + | chr7.4:79899005-79899024 | MS.gene56146:CDS | 35.0% | |
| TGCTTATAAATGTGACTGGA+GGG | - | chr7.4:79897206-79897225 | None:intergenic | 35.0% | |
| TGGTTAATTAGGGAAAGTGA+AGG | - | chr7.4:79898188-79898207 | None:intergenic | 35.0% | |
| TTCATAGGATACAAGATGTC+AGG | - | chr7.4:79898426-79898445 | None:intergenic | 35.0% | |
| TTGCTTATAAATGTGACTGG+AGG | - | chr7.4:79897207-79897226 | None:intergenic | 35.0% | |
| TTGTGATAGACCAAACAAAG+AGG | - | chr7.4:79898603-79898622 | None:intergenic | 35.0% | |
| TTGTTGCATATAGTCCTCTT+GGG | + | chr7.4:79897601-79897620 | MS.gene56146:CDS | 35.0% | |
| TTTCTTAGGGAACTTGGTAT+TGG | + | chr7.4:79897576-79897595 | MS.gene56146:intron | 35.0% | |
| ! | ACTAAAAGGGTATGAGAAAG+TGG | - | chr7.4:79896455-79896474 | None:intergenic | 35.0% |
| ! | ATTTGGATTAAAGGCGTGTT+TGG | - | chr7.4:79897507-79897526 | None:intergenic | 35.0% |
| ! | CCTATTCCCAAACTGTTTTA+TGG | - | chr7.4:79897949-79897968 | None:intergenic | 35.0% |
| ! | CTGGGTTTTCTTTGTAAGAT+TGG | + | chr7.4:79896969-79896988 | MS.gene56146:intron | 35.0% |
| ! | GATCAATGATGTAAGTTGGA+GGG | - | chr7.4:79898555-79898574 | None:intergenic | 35.0% |
| ! | GGGTTTTCTTTGTAAGATTG+GGG | + | chr7.4:79896971-79896990 | MS.gene56146:intron | 35.0% |
| ! | TGATCAATGATGTAAGTTGG+AGG | - | chr7.4:79898556-79898575 | None:intergenic | 35.0% |
| !! | AAAATACATCGGTTTGTCTG+AGG | + | chr7.4:79897025-79897044 | MS.gene56146:CDS | 35.0% |
| !! | AAATTTGGTAGTTCTGACCA+TGG | - | chr7.4:79897837-79897856 | None:intergenic | 35.0% |
| !! | GCTTAAGAAACTTGTTGAAG+AGG | + | chr7.4:79896995-79897014 | MS.gene56146:CDS | 35.0% |
| !! | TACATATGTTGGTGTCATCT+TGG | + | chr7.4:79897472-79897491 | MS.gene56146:intron | 35.0% |
| !!! | AATTAGTTTTTGCATGCCAG+TGG | - | chr7.4:79897424-79897443 | None:intergenic | 35.0% |
| AAGACGTAATTCCAACTTGC+AGG | + | chr7.4:79897138-79897157 | MS.gene56146:CDS | 40.0% | |
| ACAGTGGGAAGAATGAAGTT+AGG | + | chr7.4:79896241-79896260 | MS.gene56146:CDS | 40.0% | |
| ACTAAATCACACCTGCAAGT+TGG | - | chr7.4:79897152-79897171 | None:intergenic | 40.0% | |
| AGAAAGAGAAATACTCCCTC+CGG | - | chr7.4:79897336-79897355 | None:intergenic | 40.0% | |
| AGAAGAACTTCATTGGTGTG+AGG | - | chr7.4:79896421-79896440 | None:intergenic | 40.0% | |
| ATATAGTCTGATTCTGCTGC+AGG | - | chr7.4:79898800-79898819 | None:intergenic | 40.0% | |
| ATGAGCATGTCTGCTTTCTA+TGG | + | chr7.4:79896304-79896323 | MS.gene56146:CDS | 40.0% | |
| CACACCAATGAAGTTCTTCT+TGG | + | chr7.4:79896421-79896440 | MS.gene56146:CDS | 40.0% | |
| CATTCTTTCCACAAACCTTC+CGG | - | chr7.4:79897683-79897702 | None:intergenic | 40.0% | |
| CTCATAACAGCCTCTTTGTT+TGG | + | chr7.4:79898590-79898609 | MS.gene56146:intron | 40.0% | |
| GAAGAACTTCATTGGTGTGA+GGG | - | chr7.4:79896420-79896439 | None:intergenic | 40.0% | |
| GTCTTTAGCAGATGCTGTTA+AGG | + | chr7.4:79899004-79899023 | MS.gene56146:CDS | 40.0% | |
| GTGAAGGATAGTATGTACAG+TGG | - | chr7.4:79898172-79898191 | None:intergenic | 40.0% | |
| GTTAATTGACAACTTGCCAC+AGG | + | chr7.4:79897650-79897669 | MS.gene56146:CDS | 40.0% | |
| GTTGTATCCGATGTTTGTGT+TGG | - | chr7.4:79898452-79898471 | None:intergenic | 40.0% | |
| TATGTGAGAGAAGCTTGTGA+GGG | + | chr7.4:79896686-79896705 | MS.gene56146:CDS | 40.0% | |
| TGAATGAGAGCAATCATGTC+AGG | - | chr7.4:79896346-79896365 | None:intergenic | 40.0% | |
| TGCTTATAAATGTGACCGGA+GGG | + | chr7.4:79897318-79897337 | MS.gene56146:intron | 40.0% | |
| TGTGAGAGAGAAGGTTGAAT+TGG | + | chr7.4:79896604-79896623 | MS.gene56146:CDS | 40.0% | |
| TTATGTGAGAGAAGCTTGTG+AGG | + | chr7.4:79896685-79896704 | MS.gene56146:CDS | 40.0% | |
| TTGCTTATAAATGTGACCGG+AGG | + | chr7.4:79897317-79897336 | MS.gene56146:intron | 40.0% | |
| ! | ACTAAGTTTGGAGTTAGAGC+TGG | + | chr7.4:79896629-79896648 | MS.gene56146:CDS | 40.0% |
| ! | GATGGGAAATTTGAGATCTG+TGG | + | chr7.4:79896653-79896672 | MS.gene56146:CDS | 40.0% |
| ! | GCACCGACAATTTGGATTAA+AGG | - | chr7.4:79897516-79897535 | None:intergenic | 40.0% |
| ! | GTGGTGACTTCAACTTTTCT+GGG | + | chr7.4:79896951-79896970 | MS.gene56146:intron | 40.0% |
| ! | TGAAGCACCAACACAAACAT+CGG | + | chr7.4:79898442-79898461 | MS.gene56146:intron | 40.0% |
| ! | TGTGGTGACTTCAACTTTTC+TGG | + | chr7.4:79896950-79896969 | MS.gene56146:intron | 40.0% |
| ! | TGTTTGTGTTGGTGCTTCAT+AGG | - | chr7.4:79898441-79898460 | None:intergenic | 40.0% |
| !! | ATTTTGGTCGTTCCAGGTAT+CGG | - | chr7.4:79898915-79898934 | None:intergenic | 40.0% |
| !! | TCTATGTAGCACCGACAATT+TGG | - | chr7.4:79897524-79897543 | None:intergenic | 40.0% |
| !! | TTCTCAATTTTGGTCGTTCC+AGG | - | chr7.4:79898921-79898940 | None:intergenic | 40.0% |
| !!! | AGGTTTTCAGGTTGAAATCG+AGG | - | chr7.4:79898780-79898799 | None:intergenic | 40.0% |
| ACAGCTTTCCAAGAAGAGAG+TGG | - | chr7.4:79899080-79899099 | None:intergenic | 45.0% | |
| ACTTGCCACAGGATGATTAC+CGG | + | chr7.4:79897661-79897680 | MS.gene56146:CDS | 45.0% | |
| AGAGCAATCATGTCAGGTTC+AGG | - | chr7.4:79896340-79896359 | None:intergenic | 45.0% | |
| ATACTCCACCACTCTCTTCT+TGG | + | chr7.4:79899069-79899088 | MS.gene56146:CDS | 45.0% | |
| ATCATGTCAGGTTCAGGCTT+AGG | - | chr7.4:79896334-79896353 | None:intergenic | 45.0% | |
| CAAGCTTCTCTCACATAACC+TGG | - | chr7.4:79896683-79896702 | None:intergenic | 45.0% | |
| CATGCAACCAAGTCCTTGTA+AGG | - | chr7.4:79896287-79896306 | None:intergenic | 45.0% | |
| GAAGTTAGGATCACAAGGGA+TGG | + | chr7.4:79896255-79896274 | MS.gene56146:CDS | 45.0% | |
| GATGATTACCGGAAGGTTTG+TGG | + | chr7.4:79897672-79897691 | MS.gene56146:intron | 45.0% | |
| GCTGTTAAGGGTGGTAGATA+TGG | + | chr7.4:79899017-79899036 | MS.gene56146:CDS | 45.0% | |
| TCCAACTGCACAGCTGTTAT+TGG | - | chr7.4:79897089-79897108 | None:intergenic | 45.0% | |
| TCCAATAACAGCTGTGCAGT+TGG | + | chr7.4:79897085-79897104 | MS.gene56146:CDS | 45.0% | |
| TCGTCTTCCGATTGAAGTCA+CGG | + | chr7.4:79896769-79896788 | MS.gene56146:CDS | 45.0% | |
| TCTTCTGATTGTTGCAGCTG+AGG | - | chr7.4:79897051-79897070 | None:intergenic | 45.0% | |
| TGTAGGGGTTATTGCGTCAA+TGG | - | chr7.4:79898074-79898093 | None:intergenic | 45.0% | |
| TTAGCAGATGCTGTTAAGGG+TGG | + | chr7.4:79899008-79899027 | MS.gene56146:CDS | 45.0% | |
| TTGGAGTTAGAGCTGGTGAT+GGG | + | chr7.4:79896636-79896655 | MS.gene56146:CDS | 45.0% | |
| ! | GAAGTGTCCTTACAAGGACT+TGG | + | chr7.4:79896277-79896296 | MS.gene56146:CDS | 45.0% |
| ! | TGATTCTGCTGCAGGTTTTC+AGG | - | chr7.4:79898792-79898811 | None:intergenic | 45.0% |
| ! | TTTGAAGGGTGTGAGAGAGA+AGG | + | chr7.4:79896595-79896614 | MS.gene56146:CDS | 45.0% |
| ! | TTTGAGATCTGTGGTGATCC+AGG | + | chr7.4:79896662-79896681 | MS.gene56146:CDS | 45.0% |
| ! | TTTGGAGTTAGAGCTGGTGA+TGG | + | chr7.4:79896635-79896654 | MS.gene56146:CDS | 45.0% |
| ! | TTTTGGTCGTTCCAGGTATC+GGG | - | chr7.4:79898914-79898933 | None:intergenic | 45.0% |
| !! | GGAGGGAGTATTTCTCTTTC+TGG | + | chr7.4:79897335-79897354 | MS.gene56146:intron | 45.0% |
| !! | TGAAGCACTGACATAGACAC+TGG | + | chr7.4:79897390-79897409 | MS.gene56146:intron | 45.0% |
| !! | TGTTGGTGTCATCTTGGTGT+CGG | + | chr7.4:79897478-79897497 | MS.gene56146:intron | 45.0% |
| !!! | TTTTCCTTGGTGATGAAGCC+AGG | - | chr7.4:79898883-79898902 | None:intergenic | 45.0% |
| !! | ATATATATAAGATTATATTA+AGG | - | chr7.4:79898729-79898748 | None:intergenic | 5.0% |
| ACCTTCCGGTAATCATCCTG+TGG | - | chr7.4:79897669-79897688 | None:intergenic | 50.0% | |
| ACTGTGGTCAAGAGATGTCG+AGG | + | chr7.4:79897115-79897134 | MS.gene56146:CDS | 50.0% | |
| ATGTCAGGTTCAGGCTTAGG+AGG | - | chr7.4:79896331-79896350 | None:intergenic | 50.0% | |
| GAAAAGAATCCTCGCCCAAG+AGG | - | chr7.4:79897618-79897637 | None:intergenic | 50.0% | |
| GCTTTCCAAGAAGAGAGTGG+TGG | - | chr7.4:79899077-79899096 | None:intergenic | 50.0% | |
| GGGGTTATTGCGTCAATGGT+AGG | - | chr7.4:79898070-79898089 | None:intergenic | 50.0% | |
| TAACAGCTGTGCAGTTGGAG+TGG | + | chr7.4:79897090-79897109 | MS.gene56146:CDS | 50.0% | |
| TCTGACCATGGCGAATCAGT+AGG | - | chr7.4:79897825-79897844 | None:intergenic | 50.0% | |
| ! | GGGCGAGGATTCTTTTCAAC+AGG | + | chr7.4:79897621-79897640 | MS.gene56146:CDS | 50.0% |
| !! | GGGATGGAAGTGTCCTTACA+AGG | + | chr7.4:79896271-79896290 | MS.gene56146:CDS | 50.0% |
| !! | GTTCACCTACTGATTCGCCA+TGG | + | chr7.4:79897817-79897836 | MS.gene56146:intron | 50.0% |
| AAAGACGTGTGCCCGATACC+TGG | + | chr7.4:79898900-79898919 | MS.gene56146:CDS | 55.0% | |
| CTAGCCTGGCTTCATCACCA+AGG | + | chr7.4:79898876-79898895 | MS.gene56146:CDS | 55.0% | |
| GCATATAGTCCTCTTGGGCG+AGG | + | chr7.4:79897606-79897625 | MS.gene56146:CDS | 55.0% | |
| GCCACAGGATGATTACCGGA+AGG | + | chr7.4:79897665-79897684 | MS.gene56146:CDS | 55.0% | |
| TGCAGTTGGAGTGGTCACTG+TGG | + | chr7.4:79897099-79897118 | MS.gene56146:CDS | 55.0% | |
| ! | TCGGGCACACGTCTTTTCCT+TGG | - | chr7.4:79898896-79898915 | None:intergenic | 55.0% |
| AGCCAGGCTAGTGCAAGCTG+AGG | - | chr7.4:79898867-79898886 | None:intergenic | 60.0% | |
| CACCTCAGCTTGCACTAGCC+TGG | + | chr7.4:79898862-79898881 | MS.gene56146:CDS | 60.0% | |
| CAGGCTAGTGCAAGCTGAGG+TGG | - | chr7.4:79898864-79898883 | None:intergenic | 60.0% | |
| GACACTGGACACAACGCCAC+TGG | + | chr7.4:79897405-79897424 | MS.gene56146:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 79896235 | 79899103 | 79896235 | ID=MS.gene56146 |
| chr7.4 | mRNA | 79896235 | 79899103 | 79896235 | ID=MS.gene56146.t1;Parent=MS.gene56146 |
| chr7.4 | exon | 79896235 | 79896447 | 79896235 | ID=MS.gene56146.t1.exon1;Parent=MS.gene56146.t1 |
| chr7.4 | CDS | 79896235 | 79896447 | 79896235 | ID=cds.MS.gene56146.t1;Parent=MS.gene56146.t1 |
| chr7.4 | exon | 79896593 | 79896790 | 79896593 | ID=MS.gene56146.t1.exon2;Parent=MS.gene56146.t1 |
| chr7.4 | CDS | 79896593 | 79896790 | 79896593 | ID=cds.MS.gene56146.t1;Parent=MS.gene56146.t1 |
| chr7.4 | exon | 79896987 | 79897159 | 79896987 | ID=MS.gene56146.t1.exon3;Parent=MS.gene56146.t1 |
| chr7.4 | CDS | 79896987 | 79897159 | 79896987 | ID=cds.MS.gene56146.t1;Parent=MS.gene56146.t1 |
| chr7.4 | exon | 79897584 | 79897686 | 79897584 | ID=MS.gene56146.t1.exon4;Parent=MS.gene56146.t1 |
| chr7.4 | CDS | 79897584 | 79897686 | 79897584 | ID=cds.MS.gene56146.t1;Parent=MS.gene56146.t1 |
| chr7.4 | exon | 79898771 | 79899103 | 79898771 | ID=MS.gene56146.t1.exon5;Parent=MS.gene56146.t1 |
| chr7.4 | CDS | 79898771 | 79899103 | 79898771 | ID=cds.MS.gene56146.t1;Parent=MS.gene56146.t1 |
| Gene Sequence |
| Protein sequence |
