Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53887.t1 | XP_003600546.1 | 96.5 | 433 | 15 | 0 | 1 | 433 | 1 | 433 | 5.20E-252 | 879.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53887.t1 | P20664 | 44.2 | 423 | 202 | 11 | 14 | 423 | 13 | 414 | 2.5e-93 | 344.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53887.t1 | G7IV46 | 96.5 | 433 | 15 | 0 | 1 | 433 | 1 | 433 | 3.8e-252 | 879.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049251 | MS.gene53887 | 0.811078 | 8.38E-51 | -1.69E-46 |
| MS.gene049596 | MS.gene53887 | 0.922482 | 9.29E-89 | -1.69E-46 |
| MS.gene049989 | MS.gene53887 | 0.86289 | 3.68E-64 | -1.69E-46 |
| MS.gene050297 | MS.gene53887 | 0.863907 | 1.78E-64 | -1.69E-46 |
| MS.gene05124 | MS.gene53887 | 0.940117 | 4.04E-100 | -1.69E-46 |
| MS.gene051629 | MS.gene53887 | 0.81204 | 5.18E-51 | -1.69E-46 |
| MS.gene051816 | MS.gene53887 | 0.827103 | 1.88E-54 | -1.69E-46 |
| MS.gene051914 | MS.gene53887 | 0.826014 | 3.42E-54 | -1.69E-46 |
| MS.gene051955 | MS.gene53887 | 0.847854 | 8.89E-60 | -1.69E-46 |
| MS.gene052143 | MS.gene53887 | 0.871579 | 6.14E-67 | -1.69E-46 |
| MS.gene052308 | MS.gene53887 | 0.860024 | 2.75E-63 | -1.69E-46 |
| MS.gene052367 | MS.gene53887 | 0.86369 | 2.08E-64 | -1.69E-46 |
| MS.gene053173 | MS.gene53887 | 0.881152 | 3.04E-70 | -1.69E-46 |
| MS.gene053348 | MS.gene53887 | 0.868183 | 7.89E-66 | -1.69E-46 |
| MS.gene053416 | MS.gene53887 | 0.86549 | 5.69E-65 | -1.69E-46 |
| MS.gene053417 | MS.gene53887 | 0.863393 | 2.57E-64 | -1.69E-46 |
| MS.gene054459 | MS.gene53887 | 0.805115 | 1.56E-49 | -1.69E-46 |
| MS.gene054551 | MS.gene53887 | 0.880597 | 4.81E-70 | -1.69E-46 |
| MS.gene054552 | MS.gene53887 | 0.822817 | 1.93E-53 | -1.69E-46 |
| MS.gene054593 | MS.gene53887 | 0.861494 | 9.86E-64 | -1.69E-46 |
| MS.gene054633 | MS.gene53887 | 0.85124 | 1.01E-60 | -1.69E-46 |
| MS.gene054643 | MS.gene53887 | 0.841002 | 6.19E-58 | -1.69E-46 |
| MS.gene054662 | MS.gene53887 | 0.826711 | 2.33E-54 | -1.69E-46 |
| MS.gene054885 | MS.gene53887 | 0.837566 | 4.82E-57 | -1.69E-46 |
| MS.gene055308 | MS.gene53887 | 0.850812 | 1.33E-60 | -1.69E-46 |
| MS.gene055411 | MS.gene53887 | 0.828051 | 1.11E-54 | -1.69E-46 |
| MS.gene055578 | MS.gene53887 | 0.853415 | 2.43E-61 | -1.69E-46 |
| MS.gene055957 | MS.gene53887 | 0.849286 | 3.56E-60 | -1.69E-46 |
| MS.gene056041 | MS.gene53887 | 0.878718 | 2.24E-69 | -1.69E-46 |
| MS.gene056042 | MS.gene53887 | 0.816636 | 4.99E-52 | -1.69E-46 |
| MS.gene05640 | MS.gene53887 | 0.895643 | 7.89E-76 | -1.69E-46 |
| MS.gene056526 | MS.gene53887 | 0.832282 | 1.03E-55 | -1.69E-46 |
| MS.gene057367 | MS.gene53887 | 0.811205 | 7.86E-51 | -1.69E-46 |
| MS.gene057458 | MS.gene53887 | 0.858431 | 8.28E-63 | -1.69E-46 |
| MS.gene058128 | MS.gene53887 | 0.838748 | 2.39E-57 | -1.69E-46 |
| MS.gene058818 | MS.gene53887 | 0.850862 | 1.29E-60 | -1.69E-46 |
| MS.gene058827 | MS.gene53887 | 0.820423 | 6.91E-53 | -1.69E-46 |
| MS.gene058844 | MS.gene53887 | 0.864008 | 1.66E-64 | -1.69E-46 |
| MS.gene058853 | MS.gene53887 | 0.876207 | 1.68E-68 | -1.69E-46 |
| MS.gene059300 | MS.gene53887 | 0.818201 | 2.22E-52 | -1.69E-46 |
| MS.gene059553 | MS.gene53887 | 0.871807 | 5.16E-67 | -1.69E-46 |
| MS.gene060473 | MS.gene53887 | 0.869045 | 4.15E-66 | -1.69E-46 |
| MS.gene060565 | MS.gene53887 | 0.866672 | 2.40E-65 | -1.69E-46 |
| MS.gene06057 | MS.gene53887 | 0.808392 | 3.17E-50 | -1.69E-46 |
| MS.gene06093 | MS.gene53887 | 0.894424 | 2.50E-75 | -1.69E-46 |
| MS.gene061099 | MS.gene53887 | 0.847227 | 1.32E-59 | -1.69E-46 |
| MS.gene061260 | MS.gene53887 | 0.896799 | 2.61E-76 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53887.t1 | MTR_3g062490 | 96.536 | 433 | 15 | 0 | 1 | 433 | 1 | 433 | 0.0 | 878 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53887.t1 | AT5G41880 | 67.130 | 432 | 141 | 1 | 3 | 433 | 20 | 451 | 0.0 | 625 |
Find 93 sgRNAs with CRISPR-Local
Find 332 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGCTGCAACTTTAAATTAT+AGG | 0.152070 | 3.1:-52449615 | None:intergenic |
| CTGATGTTTGCTTGGATTGC+TGG | 0.175005 | 3.1:+52445128 | MS.gene53887:CDS |
| GTAATATGGTTTGAGAAAAT+TGG | 0.179480 | 3.1:-52444242 | None:intergenic |
| TGCTGCTCTTCATCCTTTCT+TGG | 0.219140 | 3.1:+52446751 | MS.gene53887:CDS |
| CTTATGCTGATATATTTAAA+TGG | 0.242848 | 3.1:+52444406 | MS.gene53887:CDS |
| CTTCTGAACTTAGGGGAAAA+TGG | 0.275523 | 3.1:+52447057 | MS.gene53887:CDS |
| ATATTTAAATGGATGTCTTA+TGG | 0.313114 | 3.1:+52444417 | MS.gene53887:CDS |
| GGTCCAATGTCAATCTTTAA+AGG | 0.318846 | 3.1:-52444665 | None:intergenic |
| GGATGTAACTAACCGTAATA+TGG | 0.322356 | 3.1:-52444256 | None:intergenic |
| CAAACTCATCGCACCGATTT+GGG | 0.323024 | 3.1:-52448508 | None:intergenic |
| TCAAACTCATCGCACCGATT+TGG | 0.335569 | 3.1:-52448509 | None:intergenic |
| CAAGGGTGCTGATGTTTGCT+TGG | 0.351983 | 3.1:+52445120 | MS.gene53887:CDS |
| CAGCTATTGCTTCTGAACTT+AGG | 0.354309 | 3.1:+52447048 | MS.gene53887:intron |
| TGCATAAATTTACCTGGAAA+AGG | 0.360793 | 3.1:-52448550 | None:intergenic |
| CAAGGGCATTGTTGTAAGAT+TGG | 0.376905 | 3.1:-52444613 | None:intergenic |
| AGCTATTGCTTCTGAACTTA+GGG | 0.378109 | 3.1:+52447049 | MS.gene53887:intron |
| AAAATCAACTCCCTCTCAAC+TGG | 0.382678 | 3.1:-52444950 | None:intergenic |
| TCGTAAGAAGGTTTCTTTGA+TGG | 0.391864 | 3.1:+52446727 | MS.gene53887:CDS |
| ATGTGGTTCAGCCTGCAAAA+AGG | 0.392955 | 3.1:+52444891 | MS.gene53887:intron |
| TGCAAGCAGTTGTTGCAATC+TGG | 0.396731 | 3.1:+52447140 | MS.gene53887:CDS |
| TACTTACCCCAGGCTAGATA+TGG | 0.399800 | 3.1:+52447956 | MS.gene53887:CDS |
| GGAAGAATCAATCACTTTGA+TGG | 0.406439 | 3.1:-52445167 | None:intergenic |
| GGGGAAAATGGCAAGACAAT+AGG | 0.421032 | 3.1:+52447069 | MS.gene53887:CDS |
| TTCATTGTTGGGTGTGTGAT+GGG | 0.424472 | 3.1:+52446286 | MS.gene53887:CDS |
| TCGCACCGATTTGGGTCAAT+AGG | 0.425357 | 3.1:-52448500 | None:intergenic |
| CTAGATGAGCTTAATAATGA+AGG | 0.443170 | 3.1:+52448847 | MS.gene53887:CDS |
| CCTACTGTTTCAGATGACTT+TGG | 0.449397 | 3.1:+52446222 | MS.gene53887:intron |
| GGCTGTGATCAGTCCTACTT+TGG | 0.450382 | 3.1:+52444542 | MS.gene53887:CDS |
| GTCCAATGTCAATCTTTAAA+GGG | 0.452622 | 3.1:-52444664 | None:intergenic |
| GACGAAGAGGTGTTCATTGT+TGG | 0.457076 | 3.1:+52446274 | MS.gene53887:CDS |
| GCATAAATTTACCTGGAAAA+GGG | 0.457809 | 3.1:-52448549 | None:intergenic |
| AAATGTAATGTACATTCATC+AGG | 0.458206 | 3.1:-52446951 | None:intergenic |
| CGTAAGAAGGTTTCTTTGAT+GGG | 0.463042 | 3.1:+52446728 | MS.gene53887:CDS |
| GGCTTGAGAGCTGATGTTAA+TGG | 0.464362 | 3.1:+52448868 | MS.gene53887:CDS |
| CACATACTCTGGGTCTATAG+TGG | 0.465375 | 3.1:+52446252 | MS.gene53887:CDS |
| AAATTCCCTTCTTCCAAAGT+AGG | 0.470331 | 3.1:-52444555 | None:intergenic |
| GTTGCAATCTGGAAAACATA+AGG | 0.478385 | 3.1:+52447151 | MS.gene53887:CDS |
| GTTCATTGTTGGGTGTGTGA+TGG | 0.479437 | 3.1:+52446285 | MS.gene53887:CDS |
| ATCAATCACTTTGATGGCTA+TGG | 0.483305 | 3.1:-52445161 | None:intergenic |
| ATCAGTCCTACTTTGGAAGA+AGG | 0.484427 | 3.1:+52444549 | MS.gene53887:CDS |
| ACAGACCTCCATATCTAGCC+TGG | 0.488928 | 3.1:-52447964 | None:intergenic |
| TGCCCTTTAAAGATTGACAT+TGG | 0.495107 | 3.1:+52444662 | MS.gene53887:CDS |
| ACGAAGAGGTGTTCATTGTT+GGG | 0.495453 | 3.1:+52446275 | MS.gene53887:CDS |
| GAATGGAGTGGAACTTCCCT+TGG | 0.497327 | 3.1:+52449259 | MS.gene53887:intron |
| CTCAAGACTTACGCCAAGAA+AGG | 0.498182 | 3.1:-52446764 | None:intergenic |
| ATTGTAGATGGGAAACATCC+TGG | 0.501473 | 3.1:+52444521 | MS.gene53887:intron |
| CATTTAAATATATCAGCATA+AGG | 0.502545 | 3.1:-52444405 | None:intergenic |
| TTGGCTTCAAGCACATACTC+TGG | 0.507696 | 3.1:+52446241 | MS.gene53887:CDS |
| ATTATTATCACTTTGTGCAT+AGG | 0.508200 | 3.1:-52444918 | None:intergenic |
| CAAACTCAGAATCTTGTTGT+GGG | 0.516943 | 3.1:-52444216 | None:intergenic |
| ATTCATCAGGAATCATGCTT+AGG | 0.517226 | 3.1:-52446938 | None:intergenic |
| TGTGTGATGGGAAGGCTAGA+AGG | 0.517538 | 3.1:+52446298 | MS.gene53887:CDS |
| GTGTTCCTATTGACCCAAAT+CGG | 0.520731 | 3.1:+52448495 | MS.gene53887:CDS |
| TGCATTGCACTACCAACCTA+TGG | 0.526014 | 3.1:-52449648 | None:intergenic |
| AAAAGGGTGGGTACTGTGGT+AGG | 0.526266 | 3.1:-52448533 | None:intergenic |
| ACGCAAATTACTACCTCTCA+AGG | 0.539006 | 3.1:-52445188 | None:intergenic |
| AGATATTAATGTTGTGCGGT+GGG | 0.549249 | 3.1:+52447112 | MS.gene53887:CDS |
| CAATGAAAATAGTCGTAAGA+AGG | 0.549770 | 3.1:+52446715 | MS.gene53887:CDS |
| TTGATGGCTATGGTCATCAA+TGG | 0.552196 | 3.1:-52445151 | None:intergenic |
| TCAAACTCAGAATCTTGTTG+TGG | 0.556258 | 3.1:-52444217 | None:intergenic |
| CAGACCTCCATATCTAGCCT+GGG | 0.557133 | 3.1:-52447963 | None:intergenic |
| GTTACATCGACTGTGTAGAC+AGG | 0.559275 | 3.1:-52444686 | None:intergenic |
| AAATGGATGTCTTATGGCAA+CGG | 0.560209 | 3.1:+52444423 | MS.gene53887:CDS |
| TTGTTGGGTGTGTGATGGGA+AGG | 0.560818 | 3.1:+52446290 | MS.gene53887:CDS |
| TACTGCAGGAGGAGATAGAA+AGG | 0.563804 | 3.1:+52449591 | MS.gene53887:intron |
| AAGATATTAATGTTGTGCGG+TGG | 0.564243 | 3.1:+52447111 | MS.gene53887:CDS |
| TGGCTTCAAGCACATACTCT+GGG | 0.565334 | 3.1:+52446242 | MS.gene53887:CDS |
| AAAGCGTAACTGAGTTTCCA+AGG | 0.568628 | 3.1:-52449276 | None:intergenic |
| TAAATTTACCTGGAAAAGGG+TGG | 0.571443 | 3.1:-52448546 | None:intergenic |
| GTGATTGATTCTTCCTTGAG+AGG | 0.573001 | 3.1:+52445175 | MS.gene53887:CDS |
| AAAGTCATCGTTCAAAGTGA+AGG | 0.573086 | 3.1:-52444579 | None:intergenic |
| AAAATAGTCCTTGAGAACAT+TGG | 0.578336 | 3.1:-52446856 | None:intergenic |
| ATCATACACCAATGTTCTCA+AGG | 0.579918 | 3.1:+52446848 | MS.gene53887:CDS |
| TCAGTCCTACTTTGGAAGAA+GGG | 0.583160 | 3.1:+52444550 | MS.gene53887:CDS |
| TGTTCTGCTATACTTACCCC+AGG | 0.586755 | 3.1:+52447946 | MS.gene53887:CDS |
| CAGCAGTCAAAGAACTCCAT+AGG | 0.587531 | 3.1:+52449632 | MS.gene53887:CDS |
| AAGTAGGACTGATCACAGCC+AGG | 0.597622 | 3.1:-52444539 | None:intergenic |
| CTGGAAAAGGGTGGGTACTG+TGG | 0.601068 | 3.1:-52448537 | None:intergenic |
| TGTCTTCACTCCAGTTGAGA+GGG | 0.602905 | 3.1:+52444940 | MS.gene53887:CDS |
| ATGTCTTCACTCCAGTTGAG+AGG | 0.606406 | 3.1:+52444939 | MS.gene53887:CDS |
| AGTCAAAGAACTCCATAGGT+TGG | 0.606427 | 3.1:+52449636 | MS.gene53887:CDS |
| TTACCCCAGGCTAGATATGG+AGG | 0.628406 | 3.1:+52447959 | MS.gene53887:CDS |
| AAATTTACCTGGAAAAGGGT+GGG | 0.629339 | 3.1:-52448545 | None:intergenic |
| TCAAAACTTACTCGCTACTG+AGG | 0.646036 | 3.1:+52446899 | MS.gene53887:CDS |
| GATGTCAGATACTGCTGCAA+GGG | 0.646848 | 3.1:+52445103 | MS.gene53887:CDS |
| GCTATTGCTTCTGAACTTAG+GGG | 0.656609 | 3.1:+52447050 | MS.gene53887:intron |
| AAGCGTAACTGAGTTTCCAA+GGG | 0.661590 | 3.1:-52449275 | None:intergenic |
| AAGAAGATATTAATGTTGTG+CGG | 0.661821 | 3.1:+52447108 | MS.gene53887:CDS |
| TGGGTCTATAGTGGACGAAG+AGG | 0.693990 | 3.1:+52446261 | MS.gene53887:CDS |
| TGATGTCAGATACTGCTGCA+AGG | 0.695095 | 3.1:+52445102 | MS.gene53887:CDS |
| AGACCTCCATATCTAGCCTG+GGG | 0.714360 | 3.1:-52447962 | None:intergenic |
| TGTTTGGTAGCAGAATGGAG+TGG | 0.725763 | 3.1:+52449247 | MS.gene53887:intron |
| TTGAGAGCTGATGTTAATGG+TGG | 0.727071 | 3.1:+52448871 | MS.gene53887:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGAAAAAAAAATAAAAGA+GGG | - | chr3.1:52445050-52445069 | None:intergenic | 10.0% |
| !! | AAATTCTTTCATTTATTTAA+AGG | - | chr3.1:52445490-52445509 | None:intergenic | 10.0% |
| !! | AATAAGAATAAATATGATTA+TGG | - | chr3.1:52447696-52447715 | None:intergenic | 10.0% |
| !!! | TTTTATTTTTTTTTCTTTCA+TGG | + | chr3.1:52445052-52445071 | MS.gene53887:intron | 10.0% |
| !! | AACAATATATAAATAAGACT+CGG | + | chr3.1:52449532-52449551 | MS.gene53887:intron | 15.0% |
| !! | AATAAAAATTGCAAATGTTT+AGG | - | chr3.1:52448932-52448951 | None:intergenic | 15.0% |
| !! | ATCTAATAAGTTATTATAGA+TGG | - | chr3.1:52446065-52446084 | None:intergenic | 15.0% |
| !! | CATATTTAAGAATTTATAGA+AGG | + | chr3.1:52449067-52449086 | MS.gene53887:intron | 15.0% |
| !! | GAAAGAAAAAAAAATAAAAG+AGG | - | chr3.1:52445051-52445070 | None:intergenic | 15.0% |
| !! | TGATATATAGATACATATTT+GGG | - | chr3.1:52448077-52448096 | None:intergenic | 15.0% |
| !! | TTGATATATAGATACATATT+TGG | - | chr3.1:52448078-52448097 | None:intergenic | 15.0% |
| !!! | AAATTAGTCAAAAGTATTAT+TGG | - | chr3.1:52448104-52448123 | None:intergenic | 15.0% |
| !!! | AAGGTATAAAATATTCTTTT+TGG | + | chr3.1:52447170-52447189 | MS.gene53887:intron | 15.0% |
| !!! | AGACTTAATTTTTAAAAAAC+AGG | + | chr3.1:52445269-52445288 | MS.gene53887:intron | 15.0% |
| !!! | AGGTATAAAATATTCTTTTT+GGG | + | chr3.1:52447171-52447190 | MS.gene53887:intron | 15.0% |
| !!! | TATTATTTATATGCTTGTTA+AGG | - | chr3.1:52447425-52447444 | None:intergenic | 15.0% |
| !!! | TTGTTTATTTATTTAAGATG+AGG | + | chr3.1:52447600-52447619 | MS.gene53887:intron | 15.0% |
| !! | AACCACATAAAAATTGATTA+GGG | - | chr3.1:52444879-52444898 | None:intergenic | 20.0% |
| !! | ACAATATATAAATAAGACTC+GGG | + | chr3.1:52449533-52449552 | MS.gene53887:intron | 20.0% |
| !! | AGATTAATTTCCATATTACT+TGG | + | chr3.1:52447564-52447583 | MS.gene53887:intron | 20.0% |
| !! | ATATATAGATACATATTTGG+GGG | - | chr3.1:52448075-52448094 | None:intergenic | 20.0% |
| !! | ATATTTAAATGGATGTCTTA+TGG | + | chr3.1:52444417-52444436 | MS.gene53887:CDS | 20.0% |
| !! | ATGATATTAACCAAGTAATA+TGG | - | chr3.1:52447577-52447596 | None:intergenic | 20.0% |
| !! | CACAATAATACTGAATTATA+GGG | - | chr3.1:52444724-52444743 | None:intergenic | 20.0% |
| !! | CATAAATGAAAGTAACTTAA+TGG | - | chr3.1:52448038-52448057 | None:intergenic | 20.0% |
| !! | CATTTAAATATATCAGCATA+AGG | - | chr3.1:52444408-52444427 | None:intergenic | 20.0% |
| !! | CTTATGCTGATATATTTAAA+TGG | + | chr3.1:52444406-52444425 | MS.gene53887:CDS | 20.0% |
| !! | GATATATAGATACATATTTG+GGG | - | chr3.1:52448076-52448095 | None:intergenic | 20.0% |
| !! | GATTCCTATTTGAATATTTA+TGG | + | chr3.1:52445670-52445689 | MS.gene53887:intron | 20.0% |
| !! | TATAATGCTTAGTTTATAAG+TGG | + | chr3.1:52449095-52449114 | MS.gene53887:intron | 20.0% |
| !! | TATATTATCTTTACTATTGC+AGG | + | chr3.1:52446386-52446405 | MS.gene53887:intron | 20.0% |
| !! | TATTAAATCTATCTTCTCTT+TGG | + | chr3.1:52448366-52448385 | MS.gene53887:intron | 20.0% |
| !! | TTAAACGCAAAAATTTAGAT+TGG | - | chr3.1:52448135-52448154 | None:intergenic | 20.0% |
| !!! | AAGTTATTATAGATGGTTTT+AGG | - | chr3.1:52446058-52446077 | None:intergenic | 20.0% |
| !!! | AATTTTCTCAAACCATATTA+CGG | + | chr3.1:52444244-52444263 | MS.gene53887:CDS | 20.0% |
| !!! | AGTCTTGTATTTCTATAAAT+AGG | + | chr3.1:52447623-52447642 | MS.gene53887:intron | 20.0% |
| !!! | AGTTATTATAGATGGTTTTA+GGG | - | chr3.1:52446057-52446076 | None:intergenic | 20.0% |
| !!! | ATTTTTTTTTCTTTCATGGT+GGG | + | chr3.1:52445056-52445075 | MS.gene53887:intron | 20.0% |
| !!! | CTTGATAATGAATTTTGTTT+TGG | + | chr3.1:52446198-52446217 | MS.gene53887:intron | 20.0% |
| !!! | GTCTTGTATTTCTATAAATA+GGG | + | chr3.1:52447624-52447643 | MS.gene53887:intron | 20.0% |
| !!! | TATTTTTTTTTCTTTCATGG+TGG | + | chr3.1:52445055-52445074 | MS.gene53887:intron | 20.0% |
| !!! | TTCTACTTCTTCTTTTTTTT+TGG | - | chr3.1:52446603-52446622 | None:intergenic | 20.0% |
| ! | AAAATTGATTAGGGGAAAAA+CGG | - | chr3.1:52444870-52444889 | None:intergenic | 25.0% |
| ! | AAATGTAATGTACATTCATC+AGG | - | chr3.1:52446954-52446973 | None:intergenic | 25.0% |
| ! | AACAAACATTAGTACAAGTA+TGG | - | chr3.1:52446674-52446693 | None:intergenic | 25.0% |
| ! | AACATCTCAATTTAACAATC+TGG | + | chr3.1:52447732-52447751 | MS.gene53887:intron | 25.0% |
| ! | AAGAAGATATTAATGTTGTG+CGG | + | chr3.1:52447108-52447127 | MS.gene53887:CDS | 25.0% |
| ! | AATAAGCATTAGAAGATATG+AGG | - | chr3.1:52449195-52449214 | None:intergenic | 25.0% |
| ! | ACAAACATTAGTACAAGTAT+GGG | - | chr3.1:52446673-52446692 | None:intergenic | 25.0% |
| ! | ACATGACAATATATAGGAAA+AGG | - | chr3.1:52448701-52448720 | None:intergenic | 25.0% |
| ! | ACCACATAAAAATTGATTAG+GGG | - | chr3.1:52444878-52444897 | None:intergenic | 25.0% |
| ! | AGAAAATAAGAGAAAACGTA+TGG | - | chr3.1:52444365-52444384 | None:intergenic | 25.0% |
| ! | AGCAGTAAAATGAAATAACA+AGG | - | chr3.1:52446997-52447016 | None:intergenic | 25.0% |
| ! | AGTAAAATATCATGAAGTGA+AGG | - | chr3.1:52445832-52445851 | None:intergenic | 25.0% |
| ! | ATAAGCATTAGAAGATATGA+GGG | - | chr3.1:52449194-52449213 | None:intergenic | 25.0% |
| ! | ATGACAATATATAGGAAAAG+GGG | - | chr3.1:52448699-52448718 | None:intergenic | 25.0% |
| ! | ATGCTTAACTGAAATTAAGA+TGG | + | chr3.1:52445991-52446010 | MS.gene53887:intron | 25.0% |
| ! | ATGTTACAAATCACAATATC+AGG | - | chr3.1:52448819-52448838 | None:intergenic | 25.0% |
| ! | ATTACCAACAATAGTTATGA+TGG | - | chr3.1:52449568-52449587 | None:intergenic | 25.0% |
| ! | ATTATTATCACTTTGTGCAT+AGG | - | chr3.1:52444921-52444940 | None:intergenic | 25.0% |
| ! | CATGACAATATATAGGAAAA+GGG | - | chr3.1:52448700-52448719 | None:intergenic | 25.0% |
| ! | CCTACCATAAATATTCAAAT+AGG | - | chr3.1:52445677-52445696 | None:intergenic | 25.0% |
| ! | CCTATTTGAATATTTATGGT+AGG | + | chr3.1:52445674-52445693 | MS.gene53887:intron | 25.0% |
| ! | CTTTCATTTATTTAAAGGAG+AGG | - | chr3.1:52445485-52445504 | None:intergenic | 25.0% |
| ! | GAACCACATAAAAATTGATT+AGG | - | chr3.1:52444880-52444899 | None:intergenic | 25.0% |
| ! | GAAGATATTGATATGCTTAA+AGG | - | chr3.1:52448741-52448760 | None:intergenic | 25.0% |
| ! | GAGATAAAAACAAGAAACTA+AGG | + | chr3.1:52449117-52449136 | MS.gene53887:intron | 25.0% |
| ! | GCACAATAATACTGAATTAT+AGG | - | chr3.1:52444725-52444744 | None:intergenic | 25.0% |
| ! | GGATGTTTACATTTATTACT+TGG | + | chr3.1:52448643-52448662 | MS.gene53887:intron | 25.0% |
| ! | GGTGTAAAATAATTGTAGAT+GGG | + | chr3.1:52444510-52444529 | MS.gene53887:intron | 25.0% |
| ! | GGTGTAATATAATTGAGAAT+AGG | - | chr3.1:52447675-52447694 | None:intergenic | 25.0% |
| ! | GTAATATGGTTTGAGAAAAT+TGG | - | chr3.1:52444245-52444264 | None:intergenic | 25.0% |
| ! | TATACTAAGTAACAACTAGT+GGG | + | chr3.1:52446464-52446483 | MS.gene53887:intron | 25.0% |
| ! | TATATAGATACATATTTGGG+GGG | - | chr3.1:52448074-52448093 | None:intergenic | 25.0% |
| ! | TATCCAACATGACAATATAT+AGG | - | chr3.1:52448707-52448726 | None:intergenic | 25.0% |
| ! | TATTGTTGCATAAATTTACC+TGG | - | chr3.1:52448559-52448578 | None:intergenic | 25.0% |
| ! | TCTACTCTTAACAGATATAA+TGG | - | chr3.1:52445792-52445811 | None:intergenic | 25.0% |
| ! | TGCAATATTTGTACAAATAG+TGG | + | chr3.1:52447233-52447252 | MS.gene53887:intron | 25.0% |
| ! | TGGTAATTCTTCTTTATTCT+AGG | + | chr3.1:52448464-52448483 | MS.gene53887:intron | 25.0% |
| ! | TGTTTAAGTGCATAATTACT+TGG | + | chr3.1:52448444-52448463 | MS.gene53887:intron | 25.0% |
| ! | TTACATTTATTACTTGGAGT+AGG | + | chr3.1:52448649-52448668 | MS.gene53887:intron | 25.0% |
| ! | TTTCCTATATATTGTCATGT+TGG | + | chr3.1:52448701-52448720 | MS.gene53887:intron | 25.0% |
| !! | ATACTCTAAAGATAAGAAAC+TGG | - | chr3.1:52447538-52447557 | None:intergenic | 25.0% |
| !! | ATTTGATACTAACCTGTTTT+CGG | - | chr3.1:52448227-52448246 | None:intergenic | 25.0% |
| !! | CTCTAACAATCTCTTTTATT+GGG | + | chr3.1:52445345-52445364 | MS.gene53887:intron | 25.0% |
| !! | TAATAGGGATATTGCATTTT+TGG | + | chr3.1:52448974-52448993 | MS.gene53887:intron | 25.0% |
| !! | TCTCTAACAATCTCTTTTAT+TGG | + | chr3.1:52445344-52445363 | MS.gene53887:intron | 25.0% |
| !! | TCTTTGCATAGTTTTCATTA+GGG | + | chr3.1:52448622-52448641 | MS.gene53887:intron | 25.0% |
| !! | TTCTTTTATAGAGAAATGCT+AGG | + | chr3.1:52445302-52445321 | MS.gene53887:intron | 25.0% |
| !! | TTTTCTGTCTGAAAAATCAT+AGG | - | chr3.1:52448340-52448359 | None:intergenic | 25.0% |
| !!! | AGTGATTTTGATACATTGTT+TGG | + | chr3.1:52449231-52449250 | MS.gene53887:intron | 25.0% |
| !!! | TATTTAAGAGTATTTCCACT+AGG | - | chr3.1:52445529-52445548 | None:intergenic | 25.0% |
| !!! | TTATATTGACTCAAGCTATT+GGG | + | chr3.1:52448264-52448283 | MS.gene53887:intron | 25.0% |
| !!! | TTTATATTGACTCAAGCTAT+TGG | + | chr3.1:52448263-52448282 | MS.gene53887:intron | 25.0% |
| !!! | TTTTTTATTTGCAACAGAGA+TGG | + | chr3.1:52448583-52448602 | MS.gene53887:intron | 25.0% |
| AAAAATGTTTCATACCTTGC+AGG | - | chr3.1:52449335-52449354 | None:intergenic | 30.0% | |
| AAAATAAGCTCAATCCAAAC+AGG | - | chr3.1:52447299-52447318 | None:intergenic | 30.0% | |
| AAAATAGTCCTTGAGAACAT+TGG | - | chr3.1:52446859-52446878 | None:intergenic | 30.0% | |
| AAGAAACTAAGGAAGTAAGT+TGG | + | chr3.1:52449128-52449147 | MS.gene53887:intron | 30.0% | |
| AATGAAAAGGATTTGCGAAA+TGG | - | chr3.1:52449165-52449184 | None:intergenic | 30.0% | |
| AATGAATTCAATGACCAGAT+AGG | - | chr3.1:52446092-52446111 | None:intergenic | 30.0% | |
| AATGTTCAATACCATATGCT+AGG | - | chr3.1:52445875-52445894 | None:intergenic | 30.0% | |
| ACCAAGACTATTTATGTTTC+AGG | + | chr3.1:52448154-52448173 | MS.gene53887:intron | 30.0% | |
| ACCTGAAACATAAATAGTCT+TGG | - | chr3.1:52448158-52448177 | None:intergenic | 30.0% | |
| AGAGAGGATATGAGAAAAAT+GGG | - | chr3.1:52448002-52448021 | None:intergenic | 30.0% | |
| AGAGTAAAATTCTCAATCCT+CGG | - | chr3.1:52445943-52445962 | None:intergenic | 30.0% | |
| AGATAAACTAAGAACCAAGT+AGG | - | chr3.1:52447501-52447520 | None:intergenic | 30.0% | |
| AGTATCTAAAAACTTTCAGC+AGG | - | chr3.1:52445006-52445025 | None:intergenic | 30.0% | |
| ATCAAGATATCAGTGACATT+GGG | - | chr3.1:52446184-52446203 | None:intergenic | 30.0% | |
| ATGTTCAATACCATATGCTA+GGG | - | chr3.1:52445874-52445893 | None:intergenic | 30.0% | |
| ATTTGCGAAATGGAAATGTA+GGG | - | chr3.1:52449155-52449174 | None:intergenic | 30.0% | |
| CAAATGTTTAGGAATCAAAC+GGG | - | chr3.1:52448921-52448940 | None:intergenic | 30.0% | |
| CAATGAAAATAGTCGTAAGA+AGG | + | chr3.1:52446715-52446734 | MS.gene53887:CDS | 30.0% | |
| CATGTTTAAACGAGAAACAA+AGG | - | chr3.1:52449438-52449457 | None:intergenic | 30.0% | |
| CTAAAATAAGCCAATCCAAA+CGG | + | chr3.1:52447473-52447492 | MS.gene53887:intron | 30.0% | |
| CTAGATGAGCTTAATAATGA+AGG | + | chr3.1:52448847-52448866 | MS.gene53887:CDS | 30.0% | |
| CTATCCATCATAACTATTGT+TGG | + | chr3.1:52449561-52449580 | MS.gene53887:intron | 30.0% | |
| CTGCTGCAACTTTAAATTAT+AGG | - | chr3.1:52449618-52449637 | None:intergenic | 30.0% | |
| GATAAACTAAGAACCAAGTA+GGG | - | chr3.1:52447500-52447519 | None:intergenic | 30.0% | |
| GATATTGATATGCTTAAAGG+TGG | - | chr3.1:52448738-52448757 | None:intergenic | 30.0% | |
| GCAAATGTTTAGGAATCAAA+CGG | - | chr3.1:52448922-52448941 | None:intergenic | 30.0% | |
| GCATAAATTTACCTGGAAAA+GGG | - | chr3.1:52448552-52448571 | None:intergenic | 30.0% | |
| GGGTGTAAAATAATTGTAGA+TGG | + | chr3.1:52444509-52444528 | MS.gene53887:intron | 30.0% | |
| GTATACTAAGTAACAACTAG+TGG | + | chr3.1:52446463-52446482 | MS.gene53887:intron | 30.0% | |
| GTCAATATAAAAGTTGTACG+TGG | - | chr3.1:52448254-52448273 | None:intergenic | 30.0% | |
| GTCCAATGTCAATCTTTAAA+GGG | - | chr3.1:52444667-52444686 | None:intergenic | 30.0% | |
| TAAGCATTAGAAGATATGAG+GGG | - | chr3.1:52449193-52449212 | None:intergenic | 30.0% | |
| TACTGCTATTATCTTATGCT+AGG | + | chr3.1:52447010-52447029 | MS.gene53887:intron | 30.0% | |
| TAGAGAGGATATGAGAAAAA+TGG | - | chr3.1:52448003-52448022 | None:intergenic | 30.0% | |
| TAGCTGACACTAAAGAATAA+GGG | - | chr3.1:52449473-52449492 | None:intergenic | 30.0% | |
| TATCAAGATATCAGTGACAT+TGG | - | chr3.1:52446185-52446204 | None:intergenic | 30.0% | |
| TCACAACAATATCAACCATT+GGG | + | chr3.1:52446539-52446558 | MS.gene53887:intron | 30.0% | |
| TGACAATATATAGGAAAAGG+GGG | - | chr3.1:52448698-52448717 | None:intergenic | 30.0% | |
| TGCATAAATTTACCTGGAAA+AGG | - | chr3.1:52448553-52448572 | None:intergenic | 30.0% | |
| TTAAGATGGTTAAAATACCC+TGG | + | chr3.1:52446005-52446024 | MS.gene53887:intron | 30.0% | |
| TTACTGTTTAATAGTGGTAG+TGG | + | chr3.1:52444772-52444791 | MS.gene53887:intron | 30.0% | |
| TTAGCTGACACTAAAGAATA+AGG | - | chr3.1:52449474-52449493 | None:intergenic | 30.0% | |
| TTGTCATGTTGGATAAGAAA+AGG | + | chr3.1:52448712-52448731 | MS.gene53887:intron | 30.0% | |
| ! | AATATCTTCTTTTGCACTAG+AGG | - | chr3.1:52447099-52447118 | None:intergenic | 30.0% |
| ! | ATTACATTTTTCTGTTCTCC+TGG | + | chr3.1:52446965-52446984 | MS.gene53887:intron | 30.0% |
| ! | CGAGCAGAAATAATTTTATG+TGG | + | chr3.1:52449381-52449400 | MS.gene53887:intron | 30.0% |
| ! | GTCTTTGCATAGTTTTCATT+AGG | + | chr3.1:52448621-52448640 | MS.gene53887:intron | 30.0% |
| ! | TCCCCTAATCAATTTTTATG+TGG | + | chr3.1:52444874-52444893 | MS.gene53887:intron | 30.0% |
| ! | TGACTATTTTCGTGTTTACA+AGG | + | chr3.1:52446438-52446457 | MS.gene53887:CDS | 30.0% |
| ! | TGGGAAAGTTTAGAATACAA+AGG | + | chr3.1:52447190-52447209 | MS.gene53887:intron | 30.0% |
| ! | TTCTCATTTTCTGTCTCTTT+TGG | + | chr3.1:52444281-52444300 | MS.gene53887:intron | 30.0% |
| !! | AATCAAGCTTTGATAGTGTA+TGG | - | chr3.1:52446573-52446592 | None:intergenic | 30.0% |
| !!! | TAAAGGGCATTTTTCTTTGA+TGG | - | chr3.1:52444651-52444670 | None:intergenic | 30.0% |
| !!! | TCTCTTATTTTCTTCTTACC+AGG | + | chr3.1:52444372-52444391 | MS.gene53887:intron | 30.0% |
| AAAGTCATCGTTCAAAGTGA+AGG | - | chr3.1:52444582-52444601 | None:intergenic | 35.0% | |
| AAATGGATGTCTTATGGCAA+CGG | + | chr3.1:52444423-52444442 | MS.gene53887:CDS | 35.0% | |
| AAATTCCCTTCTTCCAAAGT+AGG | - | chr3.1:52444558-52444577 | None:intergenic | 35.0% | |
| AAATTTACCTGGAAAAGGGT+GGG | - | chr3.1:52448548-52448567 | None:intergenic | 35.0% | |
| AAGAGACAGAAAATGAGAAC+TGG | - | chr3.1:52444280-52444299 | None:intergenic | 35.0% | |
| AAGATATTAATGTTGTGCGG+TGG | + | chr3.1:52447111-52447130 | MS.gene53887:CDS | 35.0% | |
| AATCATGTAGCATTCTGCAT+TGG | - | chr3.1:52445654-52445673 | None:intergenic | 35.0% | |
| AATGATGTCTTTATTGCGTG+TGG | + | chr3.1:52445602-52445621 | MS.gene53887:intron | 35.0% | |
| AGAGGGTAAAAATGTCAAGA+AGG | - | chr3.1:52445033-52445052 | None:intergenic | 35.0% | |
| AGATATTAATGTTGTGCGGT+GGG | + | chr3.1:52447112-52447131 | MS.gene53887:CDS | 35.0% | |
| AGCTATTGCTTCTGAACTTA+GGG | + | chr3.1:52447049-52447068 | MS.gene53887:intron | 35.0% | |
| AGCTGACACTAAAGAATAAG+GGG | - | chr3.1:52449472-52449491 | None:intergenic | 35.0% | |
| AGTAGACTTAATGCATGTGT+TGG | + | chr3.1:52445806-52445825 | MS.gene53887:intron | 35.0% | |
| ATACTGAATTATAGGGAGAG+AGG | - | chr3.1:52444717-52444736 | None:intergenic | 35.0% | |
| ATAGAAGTCGAGAGCAATAA+GGG | + | chr3.1:52447273-52447292 | MS.gene53887:intron | 35.0% | |
| ATCATACACCAATGTTCTCA+AGG | + | chr3.1:52446848-52446867 | MS.gene53887:CDS | 35.0% | |
| ATTCATCAGGAATCATGCTT+AGG | - | chr3.1:52446941-52446960 | None:intergenic | 35.0% | |
| CATGATGAAAGATCAGAACT+GGG | - | chr3.1:52445907-52445926 | None:intergenic | 35.0% | |
| CATTTATTACTTGGAGTAGG+AGG | + | chr3.1:52448652-52448671 | MS.gene53887:intron | 35.0% | |
| CCATTCTATACAACATAAGC+AGG | - | chr3.1:52447786-52447805 | None:intergenic | 35.0% | |
| CCTGCTTATGTTGTATAGAA+TGG | + | chr3.1:52447783-52447802 | MS.gene53887:intron | 35.0% | |
| CGTAAGAAGGTTTCTTTGAT+GGG | + | chr3.1:52446728-52446747 | MS.gene53887:CDS | 35.0% | |
| CTGCGTTTACTGTTTAATAG+TGG | + | chr3.1:52444766-52444785 | MS.gene53887:intron | 35.0% | |
| CTTATTAGATTGAGCCTATC+TGG | + | chr3.1:52446075-52446094 | MS.gene53887:intron | 35.0% | |
| GAAATAACAAGGACAATACC+AGG | - | chr3.1:52446986-52447005 | None:intergenic | 35.0% | |
| GAGAAGATCATACTGATATG+TGG | - | chr3.1:52445563-52445582 | None:intergenic | 35.0% | |
| GATCGTCTAGCATAATTACT+TGG | + | chr3.1:52448419-52448438 | MS.gene53887:intron | 35.0% | |
| GATTTGCGAAATGGAAATGT+AGG | - | chr3.1:52449156-52449175 | None:intergenic | 35.0% | |
| GCCATGTAGAAGACTTAATA+GGG | + | chr3.1:52448959-52448978 | MS.gene53887:intron | 35.0% | |
| GGAAGAATCAATCACTTTGA+TGG | - | chr3.1:52445170-52445189 | None:intergenic | 35.0% | |
| GGATGTAACTAACCGTAATA+TGG | - | chr3.1:52444259-52444278 | None:intergenic | 35.0% | |
| GGTCCAATGTCAATCTTTAA+AGG | - | chr3.1:52444668-52444687 | None:intergenic | 35.0% | |
| GGTTCTTAGTTTATCTCCTA+GGG | + | chr3.1:52447505-52447524 | MS.gene53887:intron | 35.0% | |
| GTCACAACAATATCAACCAT+TGG | + | chr3.1:52446538-52446557 | MS.gene53887:intron | 35.0% | |
| GTTGCAATCTGGAAAACATA+AGG | + | chr3.1:52447151-52447170 | MS.gene53887:CDS | 35.0% | |
| GTTTATCAAGGACTAGGATT+TGG | + | chr3.1:52446486-52446505 | MS.gene53887:intron | 35.0% | |
| TAAATTTACCTGGAAAAGGG+TGG | - | chr3.1:52448549-52448568 | None:intergenic | 35.0% | |
| TAAGCAGGTGAATACTTTGT+AGG | - | chr3.1:52447771-52447790 | None:intergenic | 35.0% | |
| TACTGAATTATAGGGAGAGA+GGG | - | chr3.1:52444716-52444735 | None:intergenic | 35.0% | |
| TACTGTGTGTGATTCATTAC+AGG | + | chr3.1:52447811-52447830 | MS.gene53887:intron | 35.0% | |
| TATGGTAGGAGAATTGTTGT+AGG | + | chr3.1:52445688-52445707 | MS.gene53887:intron | 35.0% | |
| TCAAACTCAGAATCTTGTTG+TGG | - | chr3.1:52444220-52444239 | None:intergenic | 35.0% | |
| TCCCTATTAAGTCTTCTACA+TGG | - | chr3.1:52448963-52448982 | None:intergenic | 35.0% | |
| TCGTAAGAAGGTTTCTTTGA+TGG | + | chr3.1:52446727-52446746 | MS.gene53887:CDS | 35.0% | |
| TCTTATATGATGTGCACAGA+TGG | + | chr3.1:52445210-52445229 | MS.gene53887:intron | 35.0% | |
| TGCCATGTAGAAGACTTAAT+AGG | + | chr3.1:52448958-52448977 | MS.gene53887:intron | 35.0% | |
| TGGTTCTTAGTTTATCTCCT+AGG | + | chr3.1:52447504-52447523 | MS.gene53887:intron | 35.0% | |
| TGTATGGTAAATAGACCCAA+TGG | - | chr3.1:52446557-52446576 | None:intergenic | 35.0% | |
| TGTTAATTACCCCTAGCATA+TGG | + | chr3.1:52445861-52445880 | MS.gene53887:intron | 35.0% | |
| TGTTCAATACCATATGCTAG+GGG | - | chr3.1:52445873-52445892 | None:intergenic | 35.0% | |
| TTATGACGAGACTTTACTGA+TGG | + | chr3.1:52448292-52448311 | MS.gene53887:intron | 35.0% | |
| TTATTGGGTGAAACTCATGT+GGG | + | chr3.1:52445360-52445379 | MS.gene53887:intron | 35.0% | |
| TTATTGGGTGAAACTCATGT+GGG | - | chr3.1:52445379-52445360 | None:intergenic | 35.0% | |
| TTGATTTCATGTTCTGTCCA+GGG | + | chr3.1:52446692-52446711 | MS.gene53887:intron | 35.0% | |
| TTTATTGGGTGAAACTCATG+TGG | + | chr3.1:52445359-52445378 | MS.gene53887:intron | 35.0% | |
| ! | AATCAGCGTTTTCTTTTTCC+AGG | + | chr3.1:52446823-52446842 | MS.gene53887:intron | 35.0% |
| ! | ATCAATCACTTTGATGGCTA+TGG | - | chr3.1:52445164-52445183 | None:intergenic | 35.0% |
| ! | CAAACTCAGAATCTTGTTGT+GGG | - | chr3.1:52444219-52444238 | None:intergenic | 35.0% |
| ! | CTCTTTGGAAATTGTCAGAT+AGG | + | chr3.1:52448381-52448400 | MS.gene53887:intron | 35.0% |
| ! | GGAAAAAGAAAACGCTGATT+AGG | - | chr3.1:52446823-52446842 | None:intergenic | 35.0% |
| ! | GTTTTCGGATGTACACAAAA+TGG | - | chr3.1:52448212-52448231 | None:intergenic | 35.0% |
| ! | TACATTGTTTGGTAGCAGAA+TGG | + | chr3.1:52449242-52449261 | MS.gene53887:intron | 35.0% |
| ! | TGCCCTTTAAAGATTGACAT+TGG | + | chr3.1:52444662-52444681 | MS.gene53887:CDS | 35.0% |
| ! | TTTTGTGTACATCCGAAAAC+AGG | + | chr3.1:52448212-52448231 | MS.gene53887:CDS | 35.0% |
| !! | AAATGAGTGTTGCTTGACAA+CGG | + | chr3.1:52446140-52446159 | MS.gene53887:intron | 35.0% |
| !! | AACAACTAGTGGGTTTATCA+AGG | + | chr3.1:52446474-52446493 | MS.gene53887:intron | 35.0% |
| !! | ATAGCAGCATCGACATAATT+TGG | - | chr3.1:52449497-52449516 | None:intergenic | 35.0% |
| !! | CATGCTTAATATTTTTGCCG+AGG | + | chr3.1:52445923-52445942 | MS.gene53887:intron | 35.0% |
| !! | TTGTTGGTAATGAATACTGC+AGG | + | chr3.1:52449577-52449596 | MS.gene53887:intron | 35.0% |
| AAAATCAACTCCCTCTCAAC+TGG | - | chr3.1:52444953-52444972 | None:intergenic | 40.0% | |
| AAAGCGTAACTGAGTTTCCA+AGG | - | chr3.1:52449279-52449298 | None:intergenic | 40.0% | |
| AACATTGGTGTATGATGTCC+TGG | - | chr3.1:52446844-52446863 | None:intergenic | 40.0% | |
| AAGATATCAGTGACATTGGG+TGG | - | chr3.1:52446181-52446200 | None:intergenic | 40.0% | |
| AAGCGTAACTGAGTTTCCAA+GGG | - | chr3.1:52449278-52449297 | None:intergenic | 40.0% | |
| ACATTACTCTACAACCTTCC+AGG | - | chr3.1:52446026-52446045 | None:intergenic | 40.0% | |
| ACGCAAATTACTACCTCTCA+AGG | - | chr3.1:52445191-52445210 | None:intergenic | 40.0% | |
| AGTCAAAGAACTCCATAGGT+TGG | + | chr3.1:52449636-52449655 | MS.gene53887:CDS | 40.0% | |
| AGTTTCACCCAATAAGAGAG+TGG | + | chr3.1:52445431-52445450 | MS.gene53887:intron | 40.0% | |
| ATCTGATCCTGAAGATCACA+AGG | - | chr3.1:52445973-52445992 | None:intergenic | 40.0% | |
| ATTGTAGATGGGAAACATCC+TGG | + | chr3.1:52444521-52444540 | MS.gene53887:intron | 40.0% | |
| CAGCTATTGCTTCTGAACTT+AGG | + | chr3.1:52447048-52447067 | MS.gene53887:intron | 40.0% | |
| CATAGAAGTCGAGAGCAATA+AGG | + | chr3.1:52447272-52447291 | MS.gene53887:intron | 40.0% | |
| CATTACTCTACAACCTTCCA+GGG | - | chr3.1:52446025-52446044 | None:intergenic | 40.0% | |
| CATTAGAAGATATGAGGGGA+TGG | - | chr3.1:52449189-52449208 | None:intergenic | 40.0% | |
| CCTACTGTTTCAGATGACTT+TGG | + | chr3.1:52446222-52446241 | MS.gene53887:intron | 40.0% | |
| CTAACACCCACTCTCTTATT+GGG | - | chr3.1:52445441-52445460 | None:intergenic | 40.0% | |
| CTTATTGGGTGAAACTCATG+TGG | - | chr3.1:52445427-52445446 | None:intergenic | 40.0% | |
| CTTCATTCCTTGTGATCTTC+AGG | + | chr3.1:52445963-52445982 | MS.gene53887:intron | 40.0% | |
| CTTCTGAACTTAGGGGAAAA+TGG | + | chr3.1:52447057-52447076 | MS.gene53887:CDS | 40.0% | |
| GAGCTGTAGTGTGTACATTT+CGG | + | chr3.1:52445713-52445732 | MS.gene53887:intron | 40.0% | |
| GATGGTTAAAATACCCTGGA+AGG | + | chr3.1:52446009-52446028 | MS.gene53887:intron | 40.0% | |
| GCATGATGAAAGATCAGAAC+TGG | - | chr3.1:52445908-52445927 | None:intergenic | 40.0% | |
| GCTATTGCTTCTGAACTTAG+GGG | + | chr3.1:52447050-52447069 | MS.gene53887:intron | 40.0% | |
| GTTTCACCCAATAAGAGAGT+GGG | + | chr3.1:52445432-52445451 | MS.gene53887:intron | 40.0% | |
| TAGTGGTCACTAGAAGCAAT+AGG | + | chr3.1:52444789-52444808 | MS.gene53887:intron | 40.0% | |
| TCAAAACTTACTCGCTACTG+AGG | + | chr3.1:52446899-52446918 | MS.gene53887:CDS | 40.0% | |
| TCTAACACCCACTCTCTTAT+TGG | - | chr3.1:52445442-52445461 | None:intergenic | 40.0% | |
| TGGCATGAAAGATCATAGAG+AGG | - | chr3.1:52448018-52448037 | None:intergenic | 40.0% | |
| TTCAGAAGCAATAGCTGCAA+AGG | - | chr3.1:52447045-52447064 | None:intergenic | 40.0% | |
| TTCATTGTTGGGTGTGTGAT+GGG | + | chr3.1:52446286-52446305 | MS.gene53887:CDS | 40.0% | |
| TTGAGAGCTGATGTTAATGG+TGG | + | chr3.1:52448871-52448890 | MS.gene53887:CDS | 40.0% | |
| TTGTGCCTGCAAAAAGGATT+AGG | - | chr3.1:52447898-52447917 | None:intergenic | 40.0% | |
| ! | AATCCTTTTTGCAGGCACAA+GGG | + | chr3.1:52447898-52447917 | MS.gene53887:intron | 40.0% |
| ! | ATCAGTCCTACTTTGGAAGA+AGG | + | chr3.1:52444549-52444568 | MS.gene53887:CDS | 40.0% |
| ! | CCAAAGTCATCTGAAACAGT+AGG | - | chr3.1:52446225-52446244 | None:intergenic | 40.0% |
| ! | GTCTTCCTAATCCTTTTTGC+AGG | + | chr3.1:52447890-52447909 | MS.gene53887:intron | 40.0% |
| ! | GTGATTGATTCTTCCTTGAG+AGG | + | chr3.1:52445175-52445194 | MS.gene53887:CDS | 40.0% |
| ! | GTTGATTTCATGTTCTGTCC+AGG | + | chr3.1:52446691-52446710 | MS.gene53887:intron | 40.0% |
| ! | TAATCCTTTTTGCAGGCACA+AGG | + | chr3.1:52447897-52447916 | MS.gene53887:intron | 40.0% |
| ! | TACGACTATTTTCATTGCCC+TGG | - | chr3.1:52446712-52446731 | None:intergenic | 40.0% |
| ! | TCAGTCCTACTTTGGAAGAA+GGG | + | chr3.1:52444550-52444569 | MS.gene53887:CDS | 40.0% |
| ! | TGGGTCTCAAACTTTGGAAA+TGG | - | chr3.1:52445407-52445426 | None:intergenic | 40.0% |
| ! | TTGATGGCTATGGTCATCAA+TGG | - | chr3.1:52445154-52445173 | None:intergenic | 40.0% |
| !! | ACGAAGAGGTGTTCATTGTT+GGG | + | chr3.1:52446275-52446294 | MS.gene53887:CDS | 40.0% |
| !! | AGTCTGCATACTGATTTGTG+TGG | + | chr3.1:52444488-52444507 | MS.gene53887:intron | 40.0% |
| !! | CAAGGGCATTGTTGTAAGAT+TGG | - | chr3.1:52444616-52444635 | None:intergenic | 40.0% |
| !! | GTCTGCATACTGATTTGTGT+GGG | + | chr3.1:52444489-52444508 | MS.gene53887:intron | 40.0% |
| !! | TAGTGGGTTTATCAAGGACT+AGG | + | chr3.1:52446480-52446499 | MS.gene53887:intron | 40.0% |
| !! | TTGGTAATGAATACTGCAGG+AGG | + | chr3.1:52449580-52449599 | MS.gene53887:intron | 40.0% |
| AAGTAGACACAGTCACCTAG+TGG | + | chr3.1:52445511-52445530 | MS.gene53887:intron | 45.0% | |
| ACCTTTGCAAAAAGCCTGCA+AGG | + | chr3.1:52449318-52449337 | MS.gene53887:CDS | 45.0% | |
| ATGAGGGGATGGCAATGAAA+AGG | - | chr3.1:52449178-52449197 | None:intergenic | 45.0% | |
| ATGCAAAGACTTGAGCCAGA+GGG | - | chr3.1:52448611-52448630 | None:intergenic | 45.0% | |
| ATGTCTTCACTCCAGTTGAG+AGG | + | chr3.1:52444939-52444958 | MS.gene53887:CDS | 45.0% | |
| ATGTGGTTCAGCCTGCAAAA+AGG | + | chr3.1:52444891-52444910 | MS.gene53887:intron | 45.0% | |
| CACATACTCTGGGTCTATAG+TGG | + | chr3.1:52446252-52446271 | MS.gene53887:CDS | 45.0% | |
| CAGCAGTCAAAGAACTCCAT+AGG | + | chr3.1:52449632-52449651 | MS.gene53887:CDS | 45.0% | |
| CCTAGCAACAACAGTGATTC+AGG | - | chr3.1:52445750-52445769 | None:intergenic | 45.0% | |
| CCTGAATCACTGTTGTTGCT+AGG | + | chr3.1:52445747-52445766 | MS.gene53887:intron | 45.0% | |
| CTCAAGACTTACGCCAAGAA+AGG | - | chr3.1:52446767-52446786 | None:intergenic | 45.0% | |
| CTCATGTGGGTCTCAAACTT+TGG | - | chr3.1:52445413-52445432 | None:intergenic | 45.0% | |
| CTGATGTTTGCTTGGATTGC+TGG | + | chr3.1:52445128-52445147 | MS.gene53887:CDS | 45.0% | |
| GATGTCAGATACTGCTGCAA+GGG | + | chr3.1:52445103-52445122 | MS.gene53887:CDS | 45.0% | |
| GATTAGGGGAAAAACGGAAC+TGG | - | chr3.1:52444864-52444883 | None:intergenic | 45.0% | |
| GCATAAGGAAACAGCTTTCC+TGG | - | chr3.1:52444393-52444412 | None:intergenic | 45.0% | |
| GGCAGAGTAAACTTATGCCA+AGG | - | chr3.1:52445633-52445652 | None:intergenic | 45.0% | |
| GGCTTGAGAGCTGATGTTAA+TGG | + | chr3.1:52448868-52448887 | MS.gene53887:CDS | 45.0% | |
| GGGGAAAATGGCAAGACAAT+AGG | + | chr3.1:52447069-52447088 | MS.gene53887:CDS | 45.0% | |
| GTTCATTGTTGGGTGTGTGA+TGG | + | chr3.1:52446285-52446304 | MS.gene53887:CDS | 45.0% | |
| TACTGCAGGAGGAGATAGAA+AGG | + | chr3.1:52449591-52449610 | MS.gene53887:intron | 45.0% | |
| TACTTACCCCAGGCTAGATA+TGG | + | chr3.1:52447956-52447975 | MS.gene53887:CDS | 45.0% | |
| TATGCAAAGACTTGAGCCAG+AGG | - | chr3.1:52448612-52448631 | None:intergenic | 45.0% | |
| TATTGCGTGTGGTCATTCCT+TGG | + | chr3.1:52445613-52445632 | MS.gene53887:intron | 45.0% | |
| TGATGTCAGATACTGCTGCA+AGG | + | chr3.1:52445102-52445121 | MS.gene53887:CDS | 45.0% | |
| TGCAAGCAGTTGTTGCAATC+TGG | + | chr3.1:52447140-52447159 | MS.gene53887:CDS | 45.0% | |
| TGCTGCTCTTCATCCTTTCT+TGG | + | chr3.1:52446751-52446770 | MS.gene53887:CDS | 45.0% | |
| TGGCTTCAAGCACATACTCT+GGG | + | chr3.1:52446242-52446261 | MS.gene53887:CDS | 45.0% | |
| TGTCTTCACTCCAGTTGAGA+GGG | + | chr3.1:52444940-52444959 | MS.gene53887:CDS | 45.0% | |
| TGTTCTGCTATACTTACCCC+AGG | + | chr3.1:52447946-52447965 | MS.gene53887:CDS | 45.0% | |
| TTGGCTTCAAGCACATACTC+TGG | + | chr3.1:52446241-52446260 | MS.gene53887:CDS | 45.0% | |
| ! | ACCTTGCAGGCTTTTTGCAA+AGG | - | chr3.1:52449322-52449341 | None:intergenic | 45.0% |
| ! | GTTACATCGACTGTGTAGAC+AGG | - | chr3.1:52444689-52444708 | None:intergenic | 45.0% |
| ! | TGGGTCTCGTCACTTTATGT+GGG | + | chr3.1:52445379-52445398 | MS.gene53887:intron | 45.0% |
| ! | TGTTTGGTAGCAGAATGGAG+TGG | + | chr3.1:52449247-52449266 | MS.gene53887:intron | 45.0% |
| !! | CTAGGATTTGGTGCAGTTGA+TGG | + | chr3.1:52446498-52446517 | MS.gene53887:intron | 45.0% |
| !! | GACGAAGAGGTGTTCATTGT+TGG | + | chr3.1:52446274-52446293 | MS.gene53887:CDS | 45.0% |
| !! | GATGGAGTTTTCGAGCTCAA+GGG | - | chr3.1:52444633-52444652 | None:intergenic | 45.0% |
| !! | TGATGGAGTTTTCGAGCTCA+AGG | - | chr3.1:52444634-52444653 | None:intergenic | 45.0% |
| !! | TTTCTTTCATGGTGGGCTCT+AGG | + | chr3.1:52445063-52445082 | MS.gene53887:intron | 45.0% |
| AAGTAGGACTGATCACAGCC+AGG | - | chr3.1:52444542-52444561 | None:intergenic | 50.0% | |
| ACAGACCTCCATATCTAGCC+TGG | - | chr3.1:52447967-52447986 | None:intergenic | 50.0% | |
| AGAAACTGGCACTAGACCCT+AGG | - | chr3.1:52447524-52447543 | None:intergenic | 50.0% | |
| AGAACCAAGTAGGGTCCGTT+TGG | - | chr3.1:52447491-52447510 | None:intergenic | 50.0% | |
| AGACCTCCATATCTAGCCTG+GGG | - | chr3.1:52447965-52447984 | None:intergenic | 50.0% | |
| CAACCCTTGTGCCTGCAAAA+AGG | - | chr3.1:52447904-52447923 | None:intergenic | 50.0% | |
| CAAGTAGGGTCCGTTTGGAT+TGG | - | chr3.1:52447486-52447505 | None:intergenic | 50.0% | |
| CAATCCAAACGGACCCTACT+TGG | + | chr3.1:52447484-52447503 | MS.gene53887:intron | 50.0% | |
| CAGACCTCCATATCTAGCCT+GGG | - | chr3.1:52447966-52447985 | None:intergenic | 50.0% | |
| GAATGGAGTGGAACTTCCCT+TGG | + | chr3.1:52449259-52449278 | MS.gene53887:intron | 50.0% | |
| GAGAGCAATAAGGGCCTGTT+TGG | + | chr3.1:52447282-52447301 | MS.gene53887:intron | 50.0% | |
| GGATGTCTTATGGCAACGGT+AGG | + | chr3.1:52444427-52444446 | MS.gene53887:intron | 50.0% | |
| GGCTGTGATCAGTCCTACTT+TGG | + | chr3.1:52444542-52444561 | MS.gene53887:CDS | 50.0% | |
| TTACCCCAGGCTAGATATGG+AGG | + | chr3.1:52447959-52447978 | MS.gene53887:CDS | 50.0% | |
| ! | AAAAGGGTGGGTACTGTGGT+AGG | - | chr3.1:52448536-52448555 | None:intergenic | 50.0% |
| ! | GCATAGGCATGCCTTTTTGC+AGG | - | chr3.1:52444905-52444924 | None:intergenic | 50.0% |
| ! | GTGGGTCTCGTCACTTTATG+TGG | + | chr3.1:52445378-52445397 | MS.gene53887:intron | 50.0% |
| ! | TGTGTGATGGGAAGGCTAGA+AGG | + | chr3.1:52446298-52446317 | MS.gene53887:CDS | 50.0% |
| ! | TTGTTGGGTGTGTGATGGGA+AGG | + | chr3.1:52446290-52446309 | MS.gene53887:CDS | 50.0% |
| !! | CAAGGGTGCTGATGTTTGCT+TGG | + | chr3.1:52445120-52445139 | MS.gene53887:CDS | 50.0% |
| !! | TGGGTCTATAGTGGACGAAG+AGG | + | chr3.1:52446261-52446280 | MS.gene53887:CDS | 50.0% |
| GCAACAGAGATGGTTCCCTC+TGG | + | chr3.1:52448593-52448612 | MS.gene53887:intron | 55.0% | |
| ! | CACAGTACCCACCCTTTTCC+AGG | + | chr3.1:52448538-52448557 | MS.gene53887:CDS | 55.0% |
| ! | CTGGAAAAGGGTGGGTACTG+TGG | - | chr3.1:52448540-52448559 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 52444211 | 52449661 | 52444211 | ID=MS.gene53887 |
| chr3.1 | mRNA | 52444211 | 52449661 | 52444211 | ID=MS.gene53887.t1;Parent=MS.gene53887 |
| chr3.1 | exon | 52444211 | 52444265 | 52444211 | ID=MS.gene53887.t1.exon1;Parent=MS.gene53887.t1 |
| chr3.1 | CDS | 52444211 | 52444265 | 52444211 | ID=cds.MS.gene53887.t1;Parent=MS.gene53887.t1 |
| chr3.1 | exon | 52444394 | 52444444 | 52444394 | ID=MS.gene53887.t1.exon2;Parent=MS.gene53887.t1 |
| chr3.1 | CDS | 52444394 | 52444444 | 52444394 | ID=cds.MS.gene53887.t1;Parent=MS.gene53887.t1 |
| chr3.1 | exon | 52444528 | 52444703 | 52444528 | ID=MS.gene53887.t1.exon3;Parent=MS.gene53887.t1 |
| chr3.1 | CDS | 52444528 | 52444703 | 52444528 | ID=cds.MS.gene53887.t1;Parent=MS.gene53887.t1 |
| chr3.1 | exon | 52444902 | 52444979 | 52444902 | ID=MS.gene53887.t1.exon4;Parent=MS.gene53887.t1 |
| chr3.1 | CDS | 52444902 | 52444979 | 52444902 | ID=cds.MS.gene53887.t1;Parent=MS.gene53887.t1 |
| chr3.1 | exon | 52445085 | 52445196 | 52445085 | ID=MS.gene53887.t1.exon5;Parent=MS.gene53887.t1 |
| chr3.1 | CDS | 52445085 | 52445196 | 52445085 | ID=cds.MS.gene53887.t1;Parent=MS.gene53887.t1 |
| chr3.1 | exon | 52446235 | 52446319 | 52446235 | ID=MS.gene53887.t1.exon6;Parent=MS.gene53887.t1 |
| chr3.1 | CDS | 52446235 | 52446319 | 52446235 | ID=cds.MS.gene53887.t1;Parent=MS.gene53887.t1 |
| chr3.1 | exon | 52446408 | 52446459 | 52446408 | ID=MS.gene53887.t1.exon7;Parent=MS.gene53887.t1 |
| chr3.1 | CDS | 52446408 | 52446459 | 52446408 | ID=cds.MS.gene53887.t1;Parent=MS.gene53887.t1 |
| chr3.1 | exon | 52446713 | 52446774 | 52446713 | ID=MS.gene53887.t1.exon8;Parent=MS.gene53887.t1 |
| chr3.1 | CDS | 52446713 | 52446774 | 52446713 | ID=cds.MS.gene53887.t1;Parent=MS.gene53887.t1 |
| chr3.1 | exon | 52446845 | 52446960 | 52446845 | ID=MS.gene53887.t1.exon9;Parent=MS.gene53887.t1 |
| chr3.1 | CDS | 52446845 | 52446960 | 52446845 | ID=cds.MS.gene53887.t1;Parent=MS.gene53887.t1 |
| chr3.1 | exon | 52447051 | 52447172 | 52447051 | ID=MS.gene53887.t1.exon10;Parent=MS.gene53887.t1 |
| chr3.1 | CDS | 52447051 | 52447172 | 52447051 | ID=cds.MS.gene53887.t1;Parent=MS.gene53887.t1 |
| chr3.1 | exon | 52447912 | 52447980 | 52447912 | ID=MS.gene53887.t1.exon11;Parent=MS.gene53887.t1 |
| chr3.1 | CDS | 52447912 | 52447980 | 52447912 | ID=cds.MS.gene53887.t1;Parent=MS.gene53887.t1 |
| chr3.1 | exon | 52448176 | 52448233 | 52448176 | ID=MS.gene53887.t1.exon12;Parent=MS.gene53887.t1 |
| chr3.1 | CDS | 52448176 | 52448233 | 52448176 | ID=cds.MS.gene53887.t1;Parent=MS.gene53887.t1 |
| chr3.1 | exon | 52448486 | 52448559 | 52448486 | ID=MS.gene53887.t1.exon13;Parent=MS.gene53887.t1 |
| chr3.1 | CDS | 52448486 | 52448559 | 52448486 | ID=cds.MS.gene53887.t1;Parent=MS.gene53887.t1 |
| chr3.1 | exon | 52448844 | 52448892 | 52448844 | ID=MS.gene53887.t1.exon14;Parent=MS.gene53887.t1 |
| chr3.1 | CDS | 52448844 | 52448892 | 52448844 | ID=cds.MS.gene53887.t1;Parent=MS.gene53887.t1 |
| chr3.1 | exon | 52449260 | 52449339 | 52449260 | ID=MS.gene53887.t1.exon15;Parent=MS.gene53887.t1 |
| chr3.1 | CDS | 52449260 | 52449339 | 52449260 | ID=cds.MS.gene53887.t1;Parent=MS.gene53887.t1 |
| chr3.1 | exon | 52449599 | 52449661 | 52449599 | ID=MS.gene53887.t1.exon16;Parent=MS.gene53887.t1 |
| chr3.1 | CDS | 52449599 | 52449661 | 52449599 | ID=cds.MS.gene53887.t1;Parent=MS.gene53887.t1 |
| Gene Sequence |
| Protein sequence |
