AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene017616

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene017616.t1 MTR_8g075320 99.598 249 1 0 1 249 1 249 0.0 509
MS.gene017616.t1 MTR_2g016050 91.667 228 19 0 1 228 1 228 7.80e-157 436
MS.gene017616.t1 MTR_7g070070 42.500 200 112 3 3 200 4 202 3.82e-53 172
MS.gene017616.t1 MTR_0167s0060 38.462 234 139 3 2 232 4 235 4.98e-53 171
MS.gene017616.t1 MTR_5g016590 42.500 200 112 3 3 200 4 202 7.55e-53 172
MS.gene017616.t1 MTR_1g112250 40.171 234 130 5 4 231 8 237 6.64e-51 166
MS.gene017616.t1 MTR_8g464460 38.428 229 133 5 4 225 9 236 3.38e-42 144
MS.gene017616.t1 MTR_2g060830 39.394 231 128 7 4 225 9 236 9.56e-42 143
MS.gene017616.t1 MTR_1g022410 37.736 212 123 4 3 211 5 210 3.08e-37 132
MS.gene017616.t1 MTR_6g024135 35.260 173 110 1 4 176 8 178 2.09e-29 111
MS.gene017616.t1 MTR_4g012740 28.685 251 130 6 3 211 236 479 4.67e-19 86.3
MS.gene017616.t1 MTR_4g057090 29.545 176 115 4 25 196 110 280 1.38e-12 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene017616.t1 AT5G66140 90.400 250 23 1 1 249 1 250 4.34e-156 434
MS.gene017616.t1 AT3G51260 89.956 229 22 1 1 228 1 229 4.58e-153 426
MS.gene017616.t1 AT3G51260 91.509 212 18 0 1 212 1 212 4.47e-146 408
MS.gene017616.t1 AT3G22110 43.000 200 111 3 3 200 4 202 4.86e-54 175
MS.gene017616.t1 AT1G53850 41.453 234 127 5 4 231 8 237 3.06e-52 170
MS.gene017616.t1 AT1G53850 41.453 234 127 5 4 231 8 237 3.06e-52 170
MS.gene017616.t1 AT3G14290 42.035 226 123 4 4 223 8 231 1.17e-51 168
MS.gene017616.t1 AT1G16470 38.462 234 139 3 2 232 4 235 1.96e-51 167
MS.gene017616.t1 AT1G16470 38.462 234 139 3 2 232 4 235 1.96e-51 167
MS.gene017616.t1 AT1G79210 38.462 234 139 3 2 232 4 235 2.98e-51 167
MS.gene017616.t1 AT1G79210 38.462 234 139 3 2 232 4 235 2.98e-51 167
MS.gene017616.t1 AT1G79210 38.462 234 139 3 2 232 4 235 2.98e-51 167
MS.gene017616.t1 AT5G35590 38.627 233 133 4 2 230 7 233 1.11e-43 148
MS.gene017616.t1 AT2G05840 38.961 231 133 5 2 225 7 236 5.86e-42 144
MS.gene017616.t1 AT2G05840 38.679 212 125 3 2 209 7 217 3.07e-41 141
MS.gene017616.t1 AT1G47250 35.714 238 139 5 3 232 5 236 1.60e-39 138
MS.gene017616.t1 AT5G42790 35.294 238 140 5 3 232 5 236 3.40e-38 135
MS.gene017616.t1 AT2G05840 38.144 194 115 3 2 191 7 199 2.13e-37 130
MS.gene017616.t1 AT4G15165 34.500 200 86 4 3 200 4 160 2.62e-33 120
MS.gene017616.t1 AT2G27020 34.054 185 119 2 4 187 8 190 5.54e-30 112
MS.gene017616.t1 AT2G27020 34.054 185 119 2 4 187 110 292 1.01e-28 111

Find 66 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACATTGCTCTTGCTTGTGC+TGG 0.248856 8.2:+29758700 MS.gene017616:CDS
CCAAGTCGAGTACGCTTTAG+AGG 0.260959 8.2:+29757562 MS.gene017616:CDS
AGTGGTGGTGTGCGGCCATT+TGG 0.299429 8.2:+29758859 MS.gene017616:CDS
CGGCTAAGCTTCAAGATTCT+AGG 0.372059 8.2:+29757660 MS.gene017616:CDS
TAAAATCATGTGTCCTTAAG+AGG 0.395220 8.2:-29760066 None:intergenic
CTGTACCAGACAGACCCTTC+TGG 0.400393 8.2:+29758931 MS.gene017616:CDS
GTGGTGGTGTGCGGCCATTT+GGG 0.402302 8.2:+29758860 MS.gene017616:CDS
AGTACGCTTTAGAGGCTGTT+AGG 0.404948 8.2:+29757570 MS.gene017616:CDS
CGACGGTGAGCCTGTGACTC+TGG 0.410392 8.2:-29758771 None:intergenic
ATGCTCGTGTCTTGATAAAC+CGG 0.411856 8.2:+29758734 MS.gene017616:CDS
GGAGCACGGTCTGCGTCAAT+TGG 0.423486 8.2:+29759969 MS.gene017616:CDS
CGCTTTAGAGGCTGTTAGGA+AGG 0.448743 8.2:+29757574 MS.gene017616:CDS
GGGCTTTCCACCTTGATCGT+TGG 0.461708 8.2:+29758880 MS.gene017616:CDS
ATGTACCAGAAGGGTCTGTC+TGG 0.465812 8.2:-29758936 None:intergenic
GGTATCGATAACGTCGTTCT+CGG 0.466383 8.2:+29757620 MS.gene017616:CDS
ACATTGCTCTTGCTTGTGCT+GGG 0.466582 8.2:+29758701 MS.gene017616:CDS
TGCAAAGAAAGCTCCTCTTA+AGG 0.470575 8.2:+29760053 MS.gene017616:CDS
TCTGGCATTCAACGCGTGCC+CGG 0.479291 8.2:-29758753 None:intergenic
CCTCTAAAGCGTACTCGACT+TGG 0.482229 8.2:-29757562 None:intergenic
ACTTGGAAGAGATGACCATC+GGG 0.482902 8.2:-29757545 None:intergenic
AACGCCGCCGTCGGTGTTCG+CGG 0.483392 8.2:+29757599 MS.gene017616:CDS
AGAGAGGGAGACCCGGTGTA+AGG 0.485987 8.2:-29758910 None:intergenic
GCATGGAAGGCAAATGCCAC+TGG 0.502242 8.2:+29758964 MS.gene017616:CDS
ATCAAGGTGGAAAGCCCAAA+TGG 0.513612 8.2:-29758874 None:intergenic
TGGACAGGAAACTGTGAAGT+TGG 0.514356 8.2:+29759041 MS.gene017616:CDS
AGGATCAAAGCCAACGATCA+AGG 0.514570 8.2:-29758890 None:intergenic
GCGTTGAATGCCAGAGTCAC+AGG 0.514781 8.2:+29758761 MS.gene017616:CDS
GCTGGAGACCAGCTATGTAC+CGG 0.520483 8.2:-29758822 None:intergenic
AACTCACTTCAAGCAAAGCT+CGG 0.527308 8.2:-29759068 None:intergenic
TATATTACCCGGTACATAGC+TGG 0.536354 8.2:+29758814 MS.gene017616:CDS
ATCGATACCGCGAACACCGA+CGG 0.539173 8.2:-29757606 None:intergenic
GACTTGGAAGAGATGACCAT+CGG 0.541061 8.2:-29757546 None:intergenic
AGCAGAGAAAGCAGCTGCTG+AGG 0.545135 8.2:+29760029 MS.gene017616:CDS
TGTAATTAGGTCGTCGAGAG+TGG 0.553616 8.2:+29759913 MS.gene017616:intron
GCACGGTCTGCGTCAATTGG+AGG 0.557429 8.2:+29759972 MS.gene017616:CDS
GTTGGCTTTGATCCTTACAC+CGG 0.563925 8.2:+29758898 MS.gene017616:CDS
GTAATATACTCCACAGTGCA+TGG 0.569706 8.2:-29758799 None:intergenic
AGGAAGGGTAACGCCGCCGT+CGG 0.581917 8.2:+29757590 MS.gene017616:CDS
CGAATTCGAGTTTCTGCCAG+TGG 0.583434 8.2:-29758980 None:intergenic
GCTTTAGAGGCTGTTAGGAA+GGG 0.586935 8.2:+29757575 MS.gene017616:CDS
CATGCTGAAAATGTACCAGA+AGG 0.592585 8.2:-29758946 None:intergenic
CTGGTACAGAGAGGGAGACC+CGG 0.593324 8.2:-29758917 None:intergenic
CTGGAGACCAGCTATGTACC+GGG 0.601992 8.2:-29758821 None:intergenic
CACAGTGCATGGATCTTCGA+CGG 0.606013 8.2:-29758788 None:intergenic
GGGTCTGTCTGGTACAGAGA+GGG 0.610535 8.2:-29758925 None:intergenic
CAGCAAAAGTACACACAAAG+TGG 0.611995 8.2:+29758841 MS.gene017616:CDS
TGAAGTTGCTGTGATGACTA+AGG 0.614312 8.2:+29759948 MS.gene017616:CDS
CTTCACAGTTTCCTGTCCAG+AGG 0.615209 8.2:-29759037 None:intergenic
TGCTCGTGTCTTGATAAACC+GGG 0.619876 8.2:+29758735 MS.gene017616:CDS
AGCTGAAATTGATGCCATTG+TGG 0.626656 8.2:+29759996 MS.gene017616:CDS
TGCTTCAATCTCAGCCACAA+TGG 0.630980 8.2:-29760010 None:intergenic
AGAATCTTGAAGCTTAGCCG+TGG 0.631552 8.2:-29757657 None:intergenic
TTGGCTTTGATCCTTACACC+GGG 0.640792 8.2:+29758899 MS.gene017616:CDS
ATGCTGAAAATGTACCAGAA+GGG 0.645655 8.2:-29758945 None:intergenic
AATTAGGTCGTCGAGAGTGG+TGG 0.645886 8.2:+29759916 MS.gene017616:intron
ACACACAAAGTGGTGGTGTG+CGG 0.660974 8.2:+29758851 MS.gene017616:CDS
GCACTGTGGAGTATATTACC+CGG 0.676466 8.2:+29758803 MS.gene017616:CDS
AGGGTCTGTCTGGTACAGAG+AGG 0.681482 8.2:-29758926 None:intergenic
CGGCGTTGAGAAGAAATCCA+CGG 0.683184 8.2:+29757640 MS.gene017616:CDS
CAAAAGTACACACAAAGTGG+TGG 0.687790 8.2:+29758844 MS.gene017616:CDS
GCTGTGATGACTAAGGAGCA+CGG 0.689211 8.2:+29759955 MS.gene017616:CDS
ATCAAAGCCAACGATCAAGG+TGG 0.692772 8.2:-29758887 None:intergenic
CGTCGAAGATCCATGCACTG+TGG 0.702839 8.2:+29758789 MS.gene017616:CDS
GATACCGCGAACACCGACGG+CGG 0.718572 8.2:-29757603 None:intergenic
CTTGGAAGAGATGACCATCG+GGG 0.737892 8.2:-29757544 None:intergenic
TTGGAAGAGATGACCATCGG+GGG 0.745206 8.2:-29757543 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATAATATAATATGGATTT+GGG + chr8.2:29758614-29758633 MS.gene017616:intron 10.0%
!!! TAAAAAGTAATTAAAAGTTT+TGG - chr8.2:29759716-29759735 None:intergenic 10.0%
!! AAACTGCTTATAATATAATA+TGG + chr8.2:29758607-29758626 MS.gene017616:intron 15.0%
!! ATATTATATTATAAGCAGTT+TGG - chr8.2:29758608-29758627 None:intergenic 15.0%
!! ATTCTATCATTCATTTATAT+AGG + chr8.2:29759129-29759148 MS.gene017616:intron 15.0%
!! CTTATAATATAATATGGATT+TGG + chr8.2:29758613-29758632 MS.gene017616:intron 15.0%
!!! TAAGTAACTTGTTTTATATT+TGG + chr8.2:29759842-29759861 MS.gene017616:intron 15.0%
!! AGAAGCTATTTATTTACATA+AGG + chr8.2:29758521-29758540 MS.gene017616:intron 20.0%
!! ATTAATCGAATGAATAAACA+CGG - chr8.2:29759370-29759389 None:intergenic 20.0%
!! ATTGAAATAATCACATGTTT+CGG - chr8.2:29758044-29758063 None:intergenic 20.0%
!! CTCAAATGAATGTTAAAAAA+GGG - chr8.2:29759487-29759506 None:intergenic 20.0%
!! GAAGCTATTTATTTACATAA+GGG + chr8.2:29758522-29758541 MS.gene017616:intron 20.0%
!! TCTCAAATGAATGTTAAAAA+AGG - chr8.2:29759488-29759507 None:intergenic 20.0%
!! TCTGATAAATACTTTACATT+TGG + chr8.2:29759872-29759891 MS.gene017616:intron 20.0%
!! TGTACATTCAAACATTATAA+TGG + chr8.2:29759765-29759784 MS.gene017616:intron 20.0%
!! TTTATTCATTCGATTAATCT+GGG + chr8.2:29759372-29759391 MS.gene017616:intron 20.0%
!!! TATGACTTAGAAATTTTGTT+TGG + chr8.2:29757796-29757815 MS.gene017616:intron 20.0%
!!! TGATTTTCATTTCTCAAATT+CGG + chr8.2:29757719-29757738 MS.gene017616:intron 20.0%
!!! TTTATATATAGCAGCTTTAT+AGG + chr8.2:29758575-29758594 MS.gene017616:intron 20.0%
!!! TTTTTTTTTTTTGTAAGACC+TGG + chr8.2:29758210-29758229 MS.gene017616:intron 20.0%
! AAATCATTTGACTGCAAATT+AGG + chr8.2:29759323-29759342 MS.gene017616:intron 25.0%
! GCATAACTGTAATACTATTA+TGG + chr8.2:29759814-29759833 MS.gene017616:intron 25.0%
! GTTTATTCATTCGATTAATC+TGG + chr8.2:29759371-29759390 MS.gene017616:intron 25.0%
! TTAATCGAATGAATAAACAC+GGG - chr8.2:29759369-29759388 None:intergenic 25.0%
! TTAGAATCTTAGATCTAGTT+TGG + chr8.2:29758291-29758310 MS.gene017616:intron 25.0%
!! AAAAGCTTGTAAGATCTTTT+TGG - chr8.2:29758380-29758399 None:intergenic 25.0%
!! TTTTTCTTGCTAGAAGATAT+AGG + chr8.2:29759176-29759195 MS.gene017616:intron 25.0%
!!! AATTCTTTTCTAGAAACTCA+CGG - chr8.2:29759008-29759027 None:intergenic 25.0%
!!! ACTTGTTTTATATTTGGAAC+TGG + chr8.2:29759848-29759867 MS.gene017616:intron 25.0%
!!! GTTTTGTTGATGTTCTTTTA+TGG + chr8.2:29758175-29758194 MS.gene017616:intron 25.0%
TAGCAGAGGAATAGAAATAA+AGG + chr8.2:29758244-29758263 MS.gene017616:intron 30.0%
TAGTATTACAGTTATGCAAC+AGG - chr8.2:29759811-29759830 None:intergenic 30.0%
TATGATGTCAGTAGATAACT+TGG + chr8.2:29757984-29758003 MS.gene017616:intron 30.0%
TTTATGATATTCCTAGCTGA+TGG + chr8.2:29759732-29759751 MS.gene017616:intron 30.0%
! AAGGTTTTGCAATTTTTGTG+TGG + chr8.2:29758263-29758282 MS.gene017616:intron 30.0%
! AGATGTGAAGTAATTTGCAT+CGG + chr8.2:29757874-29757893 MS.gene017616:intron 30.0%
! GCAGTCAAATGATTTTGTTA+AGG - chr8.2:29759318-29759337 None:intergenic 30.0%
!! AAGAATTTTAAAGAGACCTC+TGG + chr8.2:29759021-29759040 MS.gene017616:CDS 30.0%
!! TTTTATGATGTTGACTACCT+AGG + chr8.2:29759212-29759231 MS.gene017616:intron 30.0%
!!! TTTTTTTTGTAAGACCTGGT+AGG + chr8.2:29758214-29758233 MS.gene017616:intron 30.0%
ATGCTGAAAATGTACCAGAA+GGG - chr8.2:29758948-29758967 None:intergenic 35.0%
CTTAAATCCTGCTATGAACT+GGG + chr8.2:29759442-29759461 MS.gene017616:intron 35.0%
TCATAGCAGGATTTAAGGAA+TGG - chr8.2:29759439-29759458 None:intergenic 35.0%
TCATTCGATTAATCTGGGTT+TGG + chr8.2:29759377-29759396 MS.gene017616:intron 35.0%
TCATTTGACTGCAAATTAGG+AGG + chr8.2:29759326-29759345 MS.gene017616:intron 35.0%
TGCAAATTAGGAGGAAGTTT+AGG + chr8.2:29759335-29759354 MS.gene017616:intron 35.0%
TGTTGATCAACAATCAGAAG+AGG - chr8.2:29759516-29759535 None:intergenic 35.0%
TTTCTATTCCTCTGCTAAAC+AGG - chr8.2:29758241-29758260 None:intergenic 35.0%
! CTTAGGGTTTAGAGTGTAAT+CGG + chr8.2:29757757-29757776 MS.gene017616:intron 35.0%
! GTGTTAGGTTTAGGATCTTA+GGG + chr8.2:29757741-29757760 MS.gene017616:intron 35.0%
!! CATTTCTCAAATTCGGTGTT+AGG + chr8.2:29757726-29757745 MS.gene017616:intron 35.0%
!! TCAAATTCGGTGTTAGGTTT+AGG + chr8.2:29757732-29757751 MS.gene017616:intron 35.0%
!!! AATTTGCTGCAACTTTTGCA+AGG + chr8.2:29759152-29759171 MS.gene017616:intron 35.0%
!!! CTTTCGTTGTTGTTTTTCGT+TGG + chr8.2:29757845-29757864 MS.gene017616:intron 35.0%
!!! TACATTTGGCTTTTCCTTGT+CGG + chr8.2:29759886-29759905 MS.gene017616:intron 35.0%
AACTCACTTCAAGCAAAGCT+CGG - chr8.2:29759071-29759090 None:intergenic 40.0%
AAGCTTCAAGATTCTAGGTC+TGG + chr8.2:29757665-29757684 MS.gene017616:intron 40.0%
ACTACAACAGTTAACACGTC+AGG - chr8.2:29757955-29757974 None:intergenic 40.0%
AGCTGAAATTGATGCCATTG+TGG + chr8.2:29759996-29760015 MS.gene017616:CDS 40.0%
ATATAAGCCCAGTTCATAGC+AGG - chr8.2:29759452-29759471 None:intergenic 40.0%
ATGCTCGTGTCTTGATAAAC+CGG + chr8.2:29758734-29758753 MS.gene017616:CDS 40.0%
ATTCCTAGCTGATGGTTGTA+TGG + chr8.2:29759740-29759759 MS.gene017616:intron 40.0%
CATGCTGAAAATGTACCAGA+AGG - chr8.2:29758949-29758968 None:intergenic 40.0%
CCAGTTCATAGCAGGATTTA+AGG - chr8.2:29759444-29759463 None:intergenic 40.0%
CCTAATTACACATACCGACA+AGG - chr8.2:29759903-29759922 None:intergenic 40.0%
CCTTAAATCCTGCTATGAAC+TGG + chr8.2:29759441-29759460 MS.gene017616:intron 40.0%
CCTTGTCGGTATGTGTAATT+AGG + chr8.2:29759900-29759919 MS.gene017616:intron 40.0%
GTAATATACTCCACAGTGCA+TGG - chr8.2:29758802-29758821 None:intergenic 40.0%
TATATTACCCGGTACATAGC+TGG + chr8.2:29758814-29758833 MS.gene017616:CDS 40.0%
TGAAGTTGCTGTGATGACTA+AGG + chr8.2:29759948-29759967 MS.gene017616:CDS 40.0%
TGCAAAGAAAGCTCCTCTTA+AGG + chr8.2:29760053-29760072 MS.gene017616:CDS 40.0%
TTACCTATGAAGCACAGACA+CGG - chr8.2:29758105-29758124 None:intergenic 40.0%
! CAAAAGTACACACAAAGTGG+TGG + chr8.2:29758844-29758863 MS.gene017616:CDS 40.0%
! CACTTTGTGTGTACTTTTGC+TGG - chr8.2:29758843-29758862 None:intergenic 40.0%
! CAGCAAAAGTACACACAAAG+TGG + chr8.2:29758841-29758860 MS.gene017616:CDS 40.0%
! CTTCTGGTACATTTTCAGCA+TGG + chr8.2:29758947-29758966 MS.gene017616:CDS 40.0%
! GGTGTTAGGTTTAGGATCTT+AGG + chr8.2:29757740-29757759 MS.gene017616:intron 40.0%
! TAATTTGCATCGGAGTGGAT+TGG + chr8.2:29757884-29757903 MS.gene017616:intron 40.0%
! TGAAGTAATTTGCATCGGAG+TGG + chr8.2:29757879-29757898 MS.gene017616:intron 40.0%
! TGGTACATTTTCAGCATGGA+AGG + chr8.2:29758951-29758970 MS.gene017616:CDS 40.0%
!! TTTTAAAGAGACCTCTGGAC+AGG + chr8.2:29759026-29759045 MS.gene017616:CDS 40.0%
AAGCCATACAACCATCAGCT+AGG - chr8.2:29759746-29759765 None:intergenic 45.0%
ACATTGCTCTTGCTTGTGCT+GGG + chr8.2:29758701-29758720 MS.gene017616:CDS 45.0%
ACGCCTTCAATCGTAAGTGT+CGG - chr8.2:29758015-29758034 None:intergenic 45.0%
ACTACCTAGGAGTGGTACTT+TGG + chr8.2:29759225-29759244 MS.gene017616:intron 45.0%
ACTTGGAAGAGATGACCATC+GGG - chr8.2:29757548-29757567 None:intergenic 45.0%
AGAATCTTGAAGCTTAGCCG+TGG - chr8.2:29757660-29757679 None:intergenic 45.0%
AGGATCAAAGCCAACGATCA+AGG - chr8.2:29758893-29758912 None:intergenic 45.0%
ATCAAAGCCAACGATCAAGG+TGG - chr8.2:29758890-29758909 None:intergenic 45.0%
ATCAAGGTGGAAAGCCCAAA+TGG - chr8.2:29758877-29758896 None:intergenic 45.0%
CCAACAATTTACCCACACTG+TGG + chr8.2:29759406-29759425 MS.gene017616:intron 45.0%
CCACAGTGTGGGTAAATTGT+TGG - chr8.2:29759409-29759428 None:intergenic 45.0%
CGGCTAAGCTTCAAGATTCT+AGG + chr8.2:29757660-29757679 MS.gene017616:CDS 45.0%
GACTTGGAAGAGATGACCAT+CGG - chr8.2:29757549-29757568 None:intergenic 45.0%
GCACTGTGGAGTATATTACC+CGG + chr8.2:29758803-29758822 MS.gene017616:CDS 45.0%
GTCTGCATTGTATAGCTAGC+AGG - chr8.2:29759585-29759604 None:intergenic 45.0%
TGCTCGTGTCTTGATAAACC+GGG + chr8.2:29758735-29758754 MS.gene017616:CDS 45.0%
TGCTTCAATCTCAGCCACAA+TGG - chr8.2:29760013-29760032 None:intergenic 45.0%
TGGACAGGAAACTGTGAAGT+TGG + chr8.2:29759041-29759060 MS.gene017616:CDS 45.0%
TGTAATTAGGTCGTCGAGAG+TGG + chr8.2:29759913-29759932 MS.gene017616:intron 45.0%
! TCTTCCAAAGTACCACTCCT+AGG - chr8.2:29759232-29759251 None:intergenic 45.0%
! TGATGTTGACTACCTAGGAG+TGG + chr8.2:29759217-29759236 MS.gene017616:intron 45.0%
!! AGTACGCTTTAGAGGCTGTT+AGG + chr8.2:29757570-29757589 MS.gene017616:CDS 45.0%
!! GCTTTAGAGGCTGTTAGGAA+GGG + chr8.2:29757575-29757594 MS.gene017616:CDS 45.0%
!! GGTATCGATAACGTCGTTCT+CGG + chr8.2:29757620-29757639 MS.gene017616:CDS 45.0%
!! GTTGGCTTTGATCCTTACAC+CGG + chr8.2:29758898-29758917 MS.gene017616:CDS 45.0%
!! TTGGCTTTGATCCTTACACC+GGG + chr8.2:29758899-29758918 MS.gene017616:CDS 45.0%
AATGGTCAGAGACCACAGTG+TGG - chr8.2:29759421-29759440 None:intergenic 50.0%
AATTAGGTCGTCGAGAGTGG+TGG + chr8.2:29759916-29759935 MS.gene017616:intron 50.0%
ATGGTCAGAGACCACAGTGT+GGG - chr8.2:29759420-29759439 None:intergenic 50.0%
ATGTACCAGAAGGGTCTGTC+TGG - chr8.2:29758939-29758958 None:intergenic 50.0%
CACAGTGCATGGATCTTCGA+CGG - chr8.2:29758791-29758810 None:intergenic 50.0%
CACATTGCTCTTGCTTGTGC+TGG + chr8.2:29758700-29758719 MS.gene017616:CDS 50.0%
CCAAGTCGAGTACGCTTTAG+AGG + chr8.2:29757562-29757581 MS.gene017616:CDS 50.0%
CTTCACAGTTTCCTGTCCAG+AGG - chr8.2:29759040-29759059 None:intergenic 50.0%
CTTGGAAGAGATGACCATCG+GGG - chr8.2:29757547-29757566 None:intergenic 50.0%
GCTGTGATGACTAAGGAGCA+CGG + chr8.2:29759955-29759974 MS.gene017616:CDS 50.0%
TCTGCTAAACAGGACCTACC+AGG - chr8.2:29758231-29758250 None:intergenic 50.0%
TGGTAGGTCCTGTTTAGCAG+AGG + chr8.2:29758230-29758249 MS.gene017616:intron 50.0%
TGTCCGTGTCTGTGCTTCAT+AGG + chr8.2:29758099-29758118 MS.gene017616:intron 50.0%
TTGGAAGAGATGACCATCGG+GGG - chr8.2:29757546-29757565 None:intergenic 50.0%
! ACACACAAAGTGGTGGTGTG+CGG + chr8.2:29758851-29758870 MS.gene017616:CDS 50.0%
! ATCACAGTTTTCTCCCCCGA+TGG + chr8.2:29757530-29757549 MS.gene017616:CDS 50.0%
! CGAATTCGAGTTTCTGCCAG+TGG - chr8.2:29758983-29759002 None:intergenic 50.0%
! CGGCGTTGAGAAGAAATCCA+CGG + chr8.2:29757640-29757659 MS.gene017616:CDS 50.0%
! GCACCGACACTTACGATTGA+AGG + chr8.2:29758009-29758028 MS.gene017616:intron 50.0%
!! CCTCTAAAGCGTACTCGACT+TGG - chr8.2:29757565-29757584 None:intergenic 50.0%
!! CGCTTTAGAGGCTGTTAGGA+AGG + chr8.2:29757574-29757593 MS.gene017616:CDS 50.0%
AGCAGAGAAAGCAGCTGCTG+AGG + chr8.2:29760029-29760048 MS.gene017616:CDS 55.0%
AGGGTCTGTCTGGTACAGAG+AGG - chr8.2:29758929-29758948 None:intergenic 55.0%
ATCGATACCGCGAACACCGA+CGG - chr8.2:29757609-29757628 None:intergenic 55.0%
CGTCGAAGATCCATGCACTG+TGG + chr8.2:29758789-29758808 MS.gene017616:CDS 55.0%
CTGGAGACCAGCTATGTACC+GGG - chr8.2:29758824-29758843 None:intergenic 55.0%
CTGTACCAGACAGACCCTTC+TGG + chr8.2:29758931-29758950 MS.gene017616:CDS 55.0%
GCATGGAAGGCAAATGCCAC+TGG + chr8.2:29758964-29758983 MS.gene017616:CDS 55.0%
GCGTTGAATGCCAGAGTCAC+AGG + chr8.2:29758761-29758780 MS.gene017616:CDS 55.0%
GCTGGAGACCAGCTATGTAC+CGG - chr8.2:29758825-29758844 None:intergenic 55.0%
GGGCTTTCCACCTTGATCGT+TGG + chr8.2:29758880-29758899 MS.gene017616:CDS 55.0%
GGGTCTGTCTGGTACAGAGA+GGG - chr8.2:29758928-29758947 None:intergenic 55.0%
AGAGAGGGAGACCCGGTGTA+AGG - chr8.2:29758913-29758932 None:intergenic 60.0%
CTGGTACAGAGAGGGAGACC+CGG - chr8.2:29758920-29758939 None:intergenic 60.0%
GCACGGTCTGCGTCAATTGG+AGG + chr8.2:29759972-29759991 MS.gene017616:CDS 60.0%
GGAGCACGGTCTGCGTCAAT+TGG + chr8.2:29759969-29759988 MS.gene017616:CDS 60.0%
TCTGGCATTCAACGCGTGCC+CGG - chr8.2:29758756-29758775 None:intergenic 60.0%
! AGTGGTGGTGTGCGGCCATT+TGG + chr8.2:29758859-29758878 MS.gene017616:CDS 60.0%
! GTGGTGGTGTGCGGCCATTT+GGG + chr8.2:29758860-29758879 MS.gene017616:CDS 60.0%
AGGAAGGGTAACGCCGCCGT+CGG + chr8.2:29757590-29757609 MS.gene017616:CDS 65.0%
CGACGGTGAGCCTGTGACTC+TGG - chr8.2:29758774-29758793 None:intergenic 65.0%
GATACCGCGAACACCGACGG+CGG - chr8.2:29757606-29757625 None:intergenic 65.0%
! AACGCCGCCGTCGGTGTTCG+CGG + chr8.2:29757599-29757618 MS.gene017616:CDS 70.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 29757509 29760083 29757509 ID=MS.gene017616
chr8.2 mRNA 29757509 29760083 29757509 ID=MS.gene017616.t1;Parent=MS.gene017616
chr8.2 exon 29757509 29757681 29757509 ID=MS.gene017616.t1.exon1;Parent=MS.gene017616.t1
chr8.2 CDS 29757509 29757681 29757509 ID=cds.MS.gene017616.t1;Parent=MS.gene017616.t1
chr8.2 exon 29758669 29759083 29758669 ID=MS.gene017616.t1.exon2;Parent=MS.gene017616.t1
chr8.2 CDS 29758669 29759083 29758669 ID=cds.MS.gene017616.t1;Parent=MS.gene017616.t1
chr8.2 exon 29759922 29760083 29759922 ID=MS.gene017616.t1.exon3;Parent=MS.gene017616.t1
chr8.2 CDS 29759922 29760083 29759922 ID=cds.MS.gene017616.t1;Parent=MS.gene017616.t1
Gene Sequence

>MS.gene017616

ATGGCAAGATACGACAGAGCGATCACAGTTTTCTCCCCCGATGGTCATCTCTTCCAAGTCGAGTACGCTTTAGAGGCTGTTAGGAAGGGTAACGCCGCCGTCGGTGTTCGCGGTATCGATAACGTCGTTCTCGGCGTTGAGAAGAAATCCACGGCTAAGCTTCAAGATTCTAGGTCTGGTTTCACACTTTTCTTCAATTTTTTATGCAATTGATTTTCATTTCTCAAATTCGGTGTTAGGTTTAGGATCTTAGGGTTTAGAGTGTAATCGGTGCTTTATGTTGTGTCTATGACTTAGAAATTTTGTTTGGAATTTCTTGTATTGAATGTTTTGTTGCTTTCGTTGTTGTTTTTCGTTGGTGATGAAGATGTGAAGTAATTTGCATCGGAGTGGATTGGTAATTTAATTTTGAGATTGCTATGATTTTGTTATAAGCATTGAAACCTGACGTGTTAACTGTTGTAGTTCTGTGATTTATGATGTCAGTAGATAACTTGGTAGCACCGACACTTACGATTGAAGGCGTGTCACACCGAAACATGTGATTATTTCAATTTATTATTATTTTTTTTTTTAAAAACGTTTACTCGTGTCCGTGTCTGTGCTTCATAGGTAAACGATGCTCTCTTGCTCAAGTGCAAACAATCATTGTGTGATGAATGATTTGTTTTGTTGATGTTCTTTTATGGTGTGTTTTTTTTTTTTTTTTTTTTGTAAGACCTGGTAGGTCCTGTTTAGCAGAGGAATAGAAATAAAGGTTTTGCAATTTTTGTGTGGTGTATTTAGAATCTTAGATCTAGTTTGGAAATAAGAGTTTATAGCTTACAATAGCTTATTGATTGAAATAAGATTATATAGTTCTTAATTTCCAAAAAGATCTTACAAGCTTTTTGATATTTATATTCTGTTGTTTTATAAATAATTTTAGAAAAATTTTGAGATACTGAAACTAATTTTAGCTTAGTATATGAGAAGCTTCGAGATAATGAAACTAATTTTAGCATAGTATATGAGAAGCTATTTATTTACATAAGGGTATAGTTATTGCAAATTCTGCTAATGCTTCTTTATATATAGCAGCTTTATAGGAGTTTATCCAAACTGCTTATAATATAATATGGATTTGGGTTGTTAACAATTATTTTGCTTTTGTTTTGCAGATCAGTGAGAAAAATTGTTAATCTAGACGATCACATTGCTCTTGCTTGTGCTGGGCTAAAAGCTGATGCTCGTGTCTTGATAAACCGGGCACGCGTTGAATGCCAGAGTCACAGGCTCACCGTCGAAGATCCATGCACTGTGGAGTATATTACCCGGTACATAGCTGGTCTCCAGCAAAAGTACACACAAAGTGGTGGTGTGCGGCCATTTGGGCTTTCCACCTTGATCGTTGGCTTTGATCCTTACACCGGGTCTCCCTCTCTGTACCAGACAGACCCTTCTGGTACATTTTCAGCATGGAAGGCAAATGCCACTGGCAGAAACTCGAATTCGATCCGTGAGTTTCTAGAAAAGAATTTTAAAGAGACCTCTGGACAGGAAACTGTGAAGTTGGCTATCCGAGCTTTGCTTGAAGTGAGTTAATTTTCTCTTTAGTGCTTTTAAAAGAAATATTATCTGATTCTATCATTCATTTATATAGGAATTTGCTGCAACTTTTGCAAGGTTTTTTCTTGCTAGAAGATATAGGTGTCTTTTACTCTTTTTATGATGTTGACTACCTAGGAGTGGTACTTTGGAAGAACTTTTAAGAGTGTCTTCAGTTCTTTATGTTTTCACTTTGCAAAAAAAATGTTTTGTGAGAGACCTTAACAAAATCATTTGACTGCAAATTAGGAGGAAGTTTAGGATGAATTACCCGTGTTTATTCATTCGATTAATCTGGGTTTGGCTTTTGCCAACAATTTACCCACACTGTGGTCTCTGACCATTCCTTAAATCCTGCTATGAACTGGGCTTATATAGCACTAAGTGTCCCTTTTTTAACATTCATTTGAGATCTCGCCTCTTCTGATTGTTGATCAACATAGTTTTTTAATTGTACATATGAACACACACAGTCAGTATAGTAAACCTGCTAGCTATACAATGCAGACATATAGCTTTTTCTTCTGCAGTATAATTATCGTTGAATAAGATTGAAACACAAATCTTATGCACTATGCGTTCACAATCACATGTGTTTAATATATGATTCATTTATGCCAAAACTTTTAATTACTTTTTATGATATTCCTAGCTGATGGTTGTATGGCTTGTACATTCAAACATTATAATGGATCAAGCATTTTTGTCTGTTCCTGTTGCATAACTGTAATACTATTATGGACTAGTAAGTAACTTGTTTTATATTTGGAACTGGATCTGATAAATACTTTACATTTGGCTTTTCCTTGTCGGTATGTGTAATTAGGTCGTCGAGAGTGGTGGTAAGAACATTGAAGTTGCTGTGATGACTAAGGAGCACGGTCTGCGTCAATTGGAGGAAGCTGAAATTGATGCCATTGTGGCTGAGATTGAAGCAGAGAAAGCAGCTGCTGAGGCTGCAAAGAAAGCTCCTCTTAAGGACACATGA
Protein sequence

>MS.gene017616.t1

MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGIDNVVLGVEKKSTAKLQDSRSVRKIVNLDDHIALACAGLKADARVLINRARVECQSHRLTVEDPCTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGSPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNFKETSGQETVKLAIRALLEVVESGGKNIEVAVMTKEHGLRQLEEAEIDAIVAEIEAEKAAAEAAKKAPLKDT