AlfalfaGEDB | MS.gene64609

M. sativa cultivar XinJiangDaYe / MS.gene64609

KEGG: K02731
GO: GO:0003674 GO:0003824 GO:0004175 GO:0004298 GO:0005575 GO:0005839 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0019538 GO:0019773 GO:0019941 GO:0032991 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0051603 GO:0070003 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901575
PFAM: PF00227.29 PF10584.12

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64609.t1	GAU34208.1	94	249	15	0	1	249	1	249	2.00E-123	451.8

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64609.t1	Q9SXU1	94.0	249	15	0	1	249	1	249	1.1e-125	450.7

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64609.t1	A0A2Z6MPD6	94.0	249	15	0	1	249	1	249	1.5e-123	451.8

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene64609	MS.gene071345	PPI
MS.gene64609	MS.gene45550	PPI
MS.gene31094	MS.gene64609	PPI
MS.gene64609	MS.gene039040	PPI
MS.gene064694	MS.gene64609	PPI
MS.gene015193	MS.gene64609	PPI
MS.gene64609	MS.gene41890	PPI
MS.gene24255	MS.gene64609	PPI
MS.gene64609	MS.gene045566	PPI
MS.gene89677	MS.gene64609	PPI
MS.gene64609	MS.gene72831	PPI
MS.gene64609	MS.gene028080	PPI
MS.gene64609	MS.gene74962	PPI
MS.gene061878	MS.gene64609	PPI
MS.gene64609	MS.gene014485	PPI
MS.gene64609	MS.gene27289	PPI
MS.gene64609	MS.gene008760	PPI
MS.gene27247	MS.gene64609	PPI
MS.gene017616	MS.gene64609	PPI
MS.gene64609	MS.gene074061	PPI
MS.gene64609	MS.gene21951	PPI
MS.gene64609	MS.gene024828	PPI
MS.gene64609	MS.gene28183	PPI
MS.gene068078	MS.gene64609	PPI
MS.gene64609	MS.gene26985	PPI
MS.gene64609	MS.gene92186	PPI
MS.gene64609	MS.gene074000	PPI
MS.gene64609	MS.gene97690	PPI
MS.gene64609	MS.gene24252	PPI
MS.gene29473	MS.gene64609	PPI
MS.gene64609	MS.gene76217	PPI
MS.gene64609	MS.gene21169	PPI
MS.gene69461	MS.gene64609	PPI
MS.gene64609	MS.gene39618	PPI
MS.gene64609	MS.gene065045	PPI
MS.gene24037	MS.gene64609	PPI
MS.gene64609	MS.gene068080	PPI
MS.gene58134	MS.gene64609	PPI
MS.gene64609	MS.gene058061	PPI
MS.gene025808	MS.gene64609	PPI
MS.gene29922	MS.gene64609	PPI
MS.gene48062	MS.gene64609	PPI
MS.gene84459	MS.gene64609	PPI
MS.gene64609	MS.gene21801	PPI
MS.gene64609	MS.gene071304	PPI
MS.gene64609	MS.gene070615	PPI
MS.gene64609	MS.gene024701	PPI
MS.gene64609	MS.gene41888	PPI
MS.gene64609	MS.gene58136	PPI
MS.gene64609	MS.gene09974	PPI
MS.gene64609	MS.gene77139	PPI
MS.gene64609	MS.gene015192	PPI
MS.gene29256	MS.gene64609	PPI
MS.gene64609	MS.gene43832	PPI
MS.gene20239	MS.gene64609	PPI
MS.gene64609	MS.gene043801	PPI
MS.gene21679	MS.gene64609	PPI
MS.gene64609	MS.gene030686	PPI
MS.gene64609	MS.gene028078	PPI
MS.gene09870	MS.gene64609	PPI
MS.gene64609	MS.gene071036	PPI
MS.gene64609	MS.gene015190	PPI
MS.gene64609	MS.gene47175	PPI
MS.gene64609	MS.gene74417	PPI
MS.gene64609	MS.gene22289	PPI
MS.gene64609	MS.gene32570	PPI
MS.gene64609	MS.gene48062	PPI
MS.gene64609	MS.gene78385	PPI
MS.gene40486	MS.gene64609	PPI
MS.gene64609	MS.gene90698	PPI
MS.gene64609	MS.gene26537	PPI
MS.gene070615	MS.gene64609	PPI
MS.gene64609	MS.gene63845	PPI
MS.gene64609	MS.gene57158	PPI
MS.gene84986	MS.gene64609	PPI
MS.gene006641	MS.gene64609	PPI
MS.gene64609	MS.gene066738	PPI
MS.gene64609	MS.gene052056	PPI
MS.gene64609	MS.gene55530	PPI
MS.gene64609	MS.gene44226	PPI
MS.gene64609	MS.gene99509	PPI
MS.gene64609	MS.gene57214	PPI
MS.gene28454	MS.gene64609	PPI
MS.gene64609	MS.gene012131	PPI
MS.gene64609	MS.gene42312	PPI
MS.gene64609	MS.gene24253	PPI
MS.gene64609	MS.gene046093	PPI
MS.gene64609	MS.gene017616	PPI
MS.gene64609	MS.gene066737	PPI
MS.gene64609	MS.gene029314	PPI
MS.gene64609	MS.gene070084	PPI
MS.gene64609	MS.gene70283	PPI
MS.gene64609	MS.gene70282	PPI
MS.gene64609	MS.gene64658	PPI
MS.gene64609	MS.gene068998	PPI
MS.gene64609	MS.gene030685	PPI
MS.gene055714	MS.gene64609	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64609.t1	MTR_8g075320	93.173	249	17	0	1	249	1	249	3.50e-161	446
MS.gene64609.t1	MTR_2g016050	92.771	249	18	0	1	249	1	249	7.79e-159	441
MS.gene64609.t1	MTR_0167s0060	38.889	234	138	3	2	232	4	235	7.91e-54	174
MS.gene64609.t1	MTR_7g070070	42.500	200	112	3	3	200	4	202	5.63e-52	169
MS.gene64609.t1	MTR_5g016590	42.500	200	112	3	3	200	4	202	1.07e-51	169
MS.gene64609.t1	MTR_1g112250	43.564	202	108	3	2	199	6	205	5.70e-50	164
MS.gene64609.t1	MTR_8g464460	38.397	237	133	6	1	225	1	236	2.88e-43	147
MS.gene64609.t1	MTR_2g060830	38.494	239	130	8	1	225	1	236	5.13e-42	144
MS.gene64609.t1	MTR_1g022410	36.019	211	130	3	2	211	4	210	2.49e-36	130
MS.gene64609.t1	MTR_6g024135	34.104	173	112	1	4	176	8	178	6.97e-28	107
MS.gene64609.t1	MTR_4g012740	28.800	250	133	7	2	211	235	479	1.05e-18	85.1
MS.gene64609.t1	MTR_4g057090	28.409	176	117	4	25	196	110	280	1.63e-12	66.6

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64609.t1	AT5G66140	88.400	250	28	1	1	249	1	250	7.10e-153	426
MS.gene64609.t1	AT3G51260	87.336	229	28	1	1	228	1	229	5.16e-149	416
MS.gene64609.t1	AT3G51260	88.679	212	24	0	1	212	1	212	9.39e-142	397
MS.gene64609.t1	AT3G22110	43.000	200	111	3	3	200	4	202	7.33e-53	172
MS.gene64609.t1	AT1G16470	38.462	234	139	3	2	232	4	235	7.47e-52	169
MS.gene64609.t1	AT1G16470	38.462	234	139	3	2	232	4	235	7.47e-52	169
MS.gene64609.t1	AT1G79210	38.462	234	139	3	2	232	4	235	1.70e-51	167
MS.gene64609.t1	AT1G79210	38.462	234	139	3	2	232	4	235	1.70e-51	167
MS.gene64609.t1	AT1G79210	38.462	234	139	3	2	232	4	235	1.70e-51	167
MS.gene64609.t1	AT1G53850	40.678	236	130	5	2	231	6	237	2.24e-51	167
MS.gene64609.t1	AT1G53850	40.678	236	130	5	2	231	6	237	2.24e-51	167
MS.gene64609.t1	AT3G14290	44.059	202	107	3	2	199	6	205	7.42e-51	166
MS.gene64609.t1	AT5G35590	38.819	237	132	6	1	225	1	236	1.35e-43	148
MS.gene64609.t1	AT2G05840	37.975	237	134	6	1	225	1	236	1.18e-41	143
MS.gene64609.t1	AT2G05840	37.615	218	126	4	1	209	1	217	2.01e-40	139
MS.gene64609.t1	AT5G42790	34.310	239	143	5	2	232	4	236	2.22e-38	135
MS.gene64609.t1	AT1G47250	33.891	239	144	5	2	232	4	236	2.31e-38	135
MS.gene64609.t1	AT2G05840	36.598	194	118	3	4	193	9	201	2.44e-36	128
MS.gene64609.t1	AT4G15165	35.000	200	85	4	3	200	4	160	4.67e-33	119
MS.gene64609.t1	AT2G27020	33.514	185	120	2	4	187	8	190	2.99e-28	108
MS.gene64609.t1	AT2G27020	33.514	185	120	2	4	187	110	292	3.33e-27	107

Find 66 sgRNAs with CRISPR-Local

Find 102 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CAACTCGGGCCCGGTTTATA+AGG	0.275165	5.3:-76522841	None:intergenic
AGTAGTGGTGTGCGGCCATT+TGG	0.275198	5.3:+76522956	MS.gene64609:CDS
GGTGAGGAAGATTGTTAGTT+TGG	0.281871	5.3:+76522769	MS.gene64609:CDS
TGGGCAAGAAACTGTCAAAT+TGG	0.335063	5.3:+76523138	MS.gene64609:CDS
CATGTTGCTCTTGCTTGTGC+TGG	0.361778	5.3:+76522797	MS.gene64609:CDS
TACATAACCCGTTACATTGC+AGG	0.399795	5.3:+76522911	MS.gene64609:CDS
TAACCTCGAGTCTTGCAGTT+TGG	0.402098	5.3:-76522418	None:intergenic
GATTGAACTTGAGTTTCTTC+CGG	0.402357	5.3:-76523080	None:intergenic
AACCTAGAATCATGTGTCCT+TGG	0.409440	5.3:-76523827	None:intergenic
CTTCAAGAGCATACTCTACT+TGG	0.421409	5.3:-76522317	None:intergenic
CTGAAGACCTGCAATGTAAC+GGG	0.426498	5.3:-76522918	None:intergenic
ATGCTCGTGTCCTTATAAAC+CGG	0.435736	5.3:+76522831	MS.gene64609:CDS
GTAGTGGTGTGCGGCCATTT+GGG	0.436998	5.3:+76522957	MS.gene64609:CDS
AACGCCGCTGTTGGCGTTCG+AGG	0.444503	5.3:+76522354	MS.gene64609:CDS
ATTAGGTTGTTGAGAGTGGA+GGG	0.456795	5.3:+76523674	MS.gene64609:intron
CGAGTCTTGCAGTTTGGCAG+CGG	0.458214	5.3:-76522412	None:intergenic
TGTAATTAGGTTGTTGAGAG+TGG	0.458926	5.3:+76523670	MS.gene64609:intron
TCTGGCATTCAACTCGGGCC+CGG	0.465148	5.3:-76522850	None:intergenic
GCTTGGAAAGCTAACGCAAC+CGG	0.470438	5.3:+76523061	MS.gene64609:CDS
ACCTAGAATCATGTGTCCTT+GGG	0.476679	5.3:-76523826	None:intergenic
ACTTGGAAGAGATGACCATC+AGG	0.480914	5.3:-76522300	None:intergenic
GGGCTTTCGACGTTGATCGT+TGG	0.483437	5.3:+76522977	MS.gene64609:CDS
TTGTACCAAACCGACCCTTC+CGG	0.487764	5.3:+76523028	MS.gene64609:CDS
CAACGGTAAGTCTATGACTC+TGG	0.487875	5.3:-76522868	None:intergenic
CGCAAAGGTAACGCCGCTGT+TGG	0.490000	5.3:+76522345	MS.gene64609:CDS
CGTTGAGGATCCTTGTACTG+TGG	0.495580	5.3:+76522886	MS.gene64609:CDS
CGCTGAGATTGAAGCAGAGA+AGG	0.501268	5.3:+76523774	MS.gene64609:CDS
ATGTACCGGAAGGGTCGGTT+TGG	0.502119	5.3:-76523033	None:intergenic
AAGAACTATAAAGACACCTC+TGG	0.510915	5.3:+76523118	MS.gene64609:CDS
AAAGACGGTGACCCGGTGTA+AGG	0.518981	5.3:-76523007	None:intergenic
AGCAGAGAAGGCAGCTGCTG+AGG	0.524478	5.3:+76523786	MS.gene64609:CDS
ATCAACGTCGAAAGCCCAAA+TGG	0.525799	5.3:-76522971	None:intergenic
GTTTATAAGGACACGAGCAT+CGG	0.528829	5.3:-76522828	None:intergenic
ATGACTCTGGCATTCAACTC+GGG	0.530398	5.3:-76522855	None:intergenic
TATGACTCTGGCATTCAACT+CGG	0.533537	5.3:-76522856	None:intergenic
GGCTATCAGCTCGTTGCTTG+AGG	0.537039	5.3:+76523159	MS.gene64609:CDS
GCTGAAGACCTGCAATGTAA+CGG	0.539298	5.3:-76522919	None:intergenic
AATTAGGTTGTTGAGAGTGG+AGG	0.542436	5.3:+76523673	MS.gene64609:intron
AGTTCTTCTCTAGAAACTCA+CGG	0.553509	5.3:-76523102	None:intergenic
TGCTCGTGTCCTTATAAACC+GGG	0.561137	5.3:+76522832	MS.gene64609:CDS
AGCGGCGTTACCTTTGCGAA+CGG	0.567249	5.3:-76522340	None:intergenic
TTGACGCAGACCATTCTCCT+TGG	0.569902	5.3:-76523722	None:intergenic
AGAACTATAAAGACACCTCT+GGG	0.578182	5.3:+76523119	MS.gene64609:CDS
TTTCCAAGCCGAAAATGTAC+CGG	0.590468	5.3:-76523047	None:intergenic
GAATGGTCTGCGTCAACTAG+AGG	0.598251	5.3:+76523729	MS.gene64609:CDS
TGCTTCAATCTCAGCGACAA+TGG	0.601944	5.3:-76523767	None:intergenic
AGAAGAATATCAAAATGTCT+CGG	0.605446	5.3:+76522250	None:intergenic
GTTATGTATTCCACAGTACA+AGG	0.608705	5.3:-76522896	None:intergenic
GCTGTGATGACCAAGGAGAA+TGG	0.610505	5.3:+76523712	MS.gene64609:CDS
TAGAATCATGTGTCCTTGGG+AGG	0.611406	5.3:-76523823	None:intergenic
TGCAAAGAAAGTTCCTCCCA+AGG	0.612392	5.3:+76523810	MS.gene64609:CDS
GCTCTTGAAGCCGTTCGCAA+AGG	0.618632	5.3:+76522330	MS.gene64609:CDS
CAAGCCGAAAATGTACCGGA+AGG	0.619903	5.3:-76523043	None:intergenic
CGAAAATGTACCGGAAGGGT+CGG	0.623923	5.3:-76523038	None:intergenic
TTGGTACAAAGACGGTGACC+CGG	0.625299	5.3:-76523014	None:intergenic
CAAAAGTACACACAGAGTAG+TGG	0.631460	5.3:+76522941	MS.gene64609:CDS
AAGCCGAAAATGTACCGGAA+GGG	0.641577	5.3:-76523042	None:intergenic
CTGCCAAACTGCAAGACTCG+AGG	0.647953	5.3:+76522415	MS.gene64609:CDS
AGACAACGTCGTTCTCTGCG+TGG	0.656938	5.3:+76522380	MS.gene64609:CDS
GGGTCGGTTTGGTACAAAGA+CGG	0.662196	5.3:-76523022	None:intergenic
TTTGACAGTTTCTTGCCCAG+AGG	0.662254	5.3:-76523134	None:intergenic
CACAGTACAAGGATCCTCAA+CGG	0.666452	5.3:-76522885	None:intergenic
TGTACCTCGAACGCCAACAG+CGG	0.680003	5.3:-76522358	None:intergenic
ACACACAGAGTAGTGGTGTG+CGG	0.698448	5.3:+76522948	MS.gene64609:CDS
GAGTCATAGACTTACCGTTG+AGG	0.701059	5.3:+76522871	MS.gene64609:CDS
TGAAGTTGCTGTGATGACCA+AGG	0.749955	5.3:+76523705	MS.gene64609:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	ATATATATAATATATGGATT+TGG	+	chr5.3:76522709-76522728	MS.gene64609:intron	10.0%
!!	TAATAAAAGCAAAAAAAAAA+AGG	-	chr5.3:76522562-76522581	None:intergenic	10.0%
!!	TATATATAATATATGGATTT+GGG	+	chr5.3:76522710-76522729	MS.gene64609:intron	10.0%
!!	TATATATATTATAAGCAGTT+TGG	-	chr5.3:76522698-76522717	None:intergenic	15.0%
!!	AAGCTATATAAATGAATGAT+AGG	-	chr5.3:76523235-76523254	None:intergenic	20.0%
!!	AATAGTAAAAGACATATACA+TGG	-	chr5.3:76523332-76523351	None:intergenic	20.0%
!!	TAATTATTTGACTGCATATT+AGG	+	chr5.3:76523460-76523479	MS.gene64609:intron	20.0%
!	ACTTTGCAAAATAAATGCAT+GGG	+	chr5.3:76523419-76523438	MS.gene64609:intron	25.0%
!	GCAGTCAAATAATTATGTTA+AGG	-	chr5.3:76523455-76523474	None:intergenic	25.0%
!	TACTTTCATAGATTAAAGAC+AGG	-	chr5.3:76523574-76523593	None:intergenic	25.0%
!	TATATTATAAGCAGTTTGGT+TGG	-	chr5.3:76522694-76522713	None:intergenic	25.0%
!	TTTCTTGCTAGATGATATAT+AGG	+	chr5.3:76523285-76523304	MS.gene64609:intron	25.0%
!!	TATAGGGTAGTATTTTCATT+TGG	+	chr5.3:76523636-76523655	MS.gene64609:intron	25.0%
!!!	TTTGCTTTTGTTTTGAAGAT+TGG	+	chr5.3:76522748-76522767	MS.gene64609:intron	25.0%
	CACTTTGCAAAATAAATGCA+TGG	+	chr5.3:76523418-76523437	MS.gene64609:intron	30.0%
	CTTTGCAAAATAAATGCATG+GGG	+	chr5.3:76523420-76523439	MS.gene64609:intron	30.0%
	TCAACAACCTAATTACATGT+AGG	-	chr5.3:76523667-76523686	None:intergenic	30.0%
!	GGTTTTTCCTACATGTAATT+AGG	+	chr5.3:76523657-76523676	MS.gene64609:intron	30.0%
!!	TTATAGTTCTAGTTGAGCAA+CGG	-	chr5.3:76522618-76522637	None:intergenic	30.0%
!!!	TTTTGTTTTGAAGATTGGTG+AGG	+	chr5.3:76522753-76522772	MS.gene64609:intron	30.0%
	AACTCGATGATCAAGAATTG+AGG	+	chr5.3:76522512-76522531	MS.gene64609:intron	35.0%
	AAGAACTATAAAGACACCTC+TGG	+	chr5.3:76523118-76523137	MS.gene64609:CDS	35.0%
	AATTCCATGCTAGGTTAATC+TGG	+	chr5.3:76522475-76522494	MS.gene64609:intron	35.0%
	AGAACTATAAAGACACCTCT+GGG	+	chr5.3:76523119-76523138	MS.gene64609:CDS	35.0%
	AGACATATACATGGAAAGAG+CGG	-	chr5.3:76523323-76523342	None:intergenic	35.0%
	CATGCAATAAATTCCATGCT+AGG	+	chr5.3:76522466-76522485	MS.gene64609:intron	35.0%
	CTAGCATGGAATTTATTGCA+TGG	-	chr5.3:76522468-76522487	None:intergenic	35.0%
	CTAGGTTAATCTGGATTCTA+GGG	+	chr5.3:76522484-76522503	MS.gene64609:intron	35.0%
	GATTGAACTTGAGTTTCTTC+CGG	-	chr5.3:76523083-76523102	None:intergenic	35.0%
	GTTATGTATTCCACAGTACA+AGG	-	chr5.3:76522899-76522918	None:intergenic	35.0%
!	AGTTCTTCTCTAGAAACTCA+CGG	-	chr5.3:76523105-76523124	None:intergenic	35.0%
!	TGTAATTAGGTTGTTGAGAG+TGG	+	chr5.3:76523670-76523689	MS.gene64609:intron	35.0%
	ATGCTCGTGTCCTTATAAAC+CGG	+	chr5.3:76522831-76522850	MS.gene64609:CDS	40.0%
	GAATCCAGATTAACCTAGCA+TGG	-	chr5.3:76522482-76522501	None:intergenic	40.0%
	GCAAAATAAATGCATGGGGA+CGG	+	chr5.3:76523424-76523443	MS.gene64609:intron	40.0%
	GCTAGGTTAATCTGGATTCT+AGG	+	chr5.3:76522483-76522502	MS.gene64609:intron	40.0%
	GGTGAGGAAGATTGTTAGTT+TGG	+	chr5.3:76522769-76522788	MS.gene64609:CDS	40.0%
	GTTTATAAGGACACGAGCAT+CGG	-	chr5.3:76522831-76522850	None:intergenic	40.0%
	TACATAACCCGTTACATTGC+AGG	+	chr5.3:76522911-76522930	MS.gene64609:CDS	40.0%
	TATGACTCTGGCATTCAACT+CGG	-	chr5.3:76522859-76522878	None:intergenic	40.0%
	TGGGCAAGAAACTGTCAAAT+TGG	+	chr5.3:76523138-76523157	MS.gene64609:CDS	40.0%
	TTAAACGCTGAGTGTGACTT+TGG	+	chr5.3:76523352-76523371	MS.gene64609:intron	40.0%
	TTTCCAAGCCGAAAATGTAC+CGG	-	chr5.3:76523050-76523069	None:intergenic	40.0%
!	AATTAGGTTGTTGAGAGTGG+AGG	+	chr5.3:76523673-76523692	MS.gene64609:intron	40.0%
!	ATCACAGTTTTCTCTCCTGA+TGG	+	chr5.3:76522285-76522304	MS.gene64609:CDS	40.0%
!	ATTAGGTTGTTGAGAGTGGA+GGG	+	chr5.3:76523674-76523693	MS.gene64609:intron	40.0%
!	CAAAAGTACACACAGAGTAG+TGG	+	chr5.3:76522941-76522960	MS.gene64609:CDS	40.0%
!	CTTCAAGAGCATACTCTACT+TGG	-	chr5.3:76522320-76522339	None:intergenic	40.0%
!!!	GTTGGTTTTGATCCTTACAC+CGG	+	chr5.3:76522995-76523014	MS.gene64609:CDS	40.0%
!!!	TTGGTTTTGATCCTTACACC+GGG	+	chr5.3:76522996-76523015	MS.gene64609:CDS	40.0%
	AAGCCGAAAATGTACCGGAA+GGG	-	chr5.3:76523045-76523064	None:intergenic	45.0%
	ACTTGGAAGAGATGACCATC+AGG	-	chr5.3:76522303-76522322	None:intergenic	45.0%
	ATCAACGTCGAAAGCCCAAA+TGG	-	chr5.3:76522974-76522993	None:intergenic	45.0%
	ATGACTCTGGCATTCAACTC+GGG	-	chr5.3:76522858-76522877	None:intergenic	45.0%
	CAACGGTAAGTCTATGACTC+TGG	-	chr5.3:76522871-76522890	None:intergenic	45.0%
	CACAGTACAAGGATCCTCAA+CGG	-	chr5.3:76522888-76522907	None:intergenic	45.0%
	CTGAAGACCTGCAATGTAAC+GGG	-	chr5.3:76522921-76522940	None:intergenic	45.0%
	GAGTCATAGACTTACCGTTG+AGG	+	chr5.3:76522871-76522890	MS.gene64609:CDS	45.0%
	GCTGAAGACCTGCAATGTAA+CGG	-	chr5.3:76522922-76522941	None:intergenic	45.0%
	GCTGAGTGTGACTTTGGATT+TGG	+	chr5.3:76523358-76523377	MS.gene64609:intron	45.0%
	TAACCTCGAGTCTTGCAGTT+TGG	-	chr5.3:76522421-76522440	None:intergenic	45.0%
	TGAAGTTGCTGTGATGACCA+AGG	+	chr5.3:76523705-76523724	MS.gene64609:CDS	45.0%
	TGCAAAGAAAGTTCCTCCCA+AGG	+	chr5.3:76523810-76523829	MS.gene64609:CDS	45.0%
	TGCTCGTGTCCTTATAAACC+GGG	+	chr5.3:76522832-76522851	MS.gene64609:CDS	45.0%
	TGCTTCAATCTCAGCGACAA+TGG	-	chr5.3:76523770-76523789	None:intergenic	45.0%
	TTTGACAGTTTCTTGCCCAG+AGG	-	chr5.3:76523137-76523156	None:intergenic	45.0%
!	GCAACGGAGCATTATACAAC+AGG	-	chr5.3:76522602-76522621	None:intergenic	45.0%
!!	ATTTATATAATACTATTATA+GGG	+	chr5.3:76523620-76523639	MS.gene64609:intron	5.0%
!!	CTTATAATATATATAATATA+TGG	+	chr5.3:76522703-76522722	MS.gene64609:intron	5.0%
!!	TATTTATATAATACTATTAT+AGG	+	chr5.3:76523619-76523638	MS.gene64609:intron	5.0%
	ACACACAGAGTAGTGGTGTG+CGG	+	chr5.3:76522948-76522967	MS.gene64609:CDS	50.0%
	CAAGCCGAAAATGTACCGGA+AGG	-	chr5.3:76523046-76523065	None:intergenic	50.0%
	CATGTTGCTCTTGCTTGTGC+TGG	+	chr5.3:76522797-76522816	MS.gene64609:CDS	50.0%
	CGAAAATGTACCGGAAGGGT+CGG	-	chr5.3:76523041-76523060	None:intergenic	50.0%
	CGCTGAGATTGAAGCAGAGA+AGG	+	chr5.3:76523774-76523793	MS.gene64609:CDS	50.0%
	CGTTGAGGATCCTTGTACTG+TGG	+	chr5.3:76522886-76522905	MS.gene64609:CDS	50.0%
	GAATGGTCTGCGTCAACTAG+AGG	+	chr5.3:76523729-76523748	MS.gene64609:CDS	50.0%
	GCTGTGATGACCAAGGAGAA+TGG	+	chr5.3:76523712-76523731	MS.gene64609:CDS	50.0%
	GCTTGGAAAGCTAACGCAAC+CGG	+	chr5.3:76523061-76523080	MS.gene64609:CDS	50.0%
	TTGACGCAGACCATTCTCCT+TGG	-	chr5.3:76523725-76523744	None:intergenic	50.0%
	TTGGTACAAAGACGGTGACC+CGG	-	chr5.3:76523017-76523036	None:intergenic	50.0%
	TTGTACCAAACCGACCCTTC+CGG	+	chr5.3:76523028-76523047	MS.gene64609:CDS	50.0%
!	CGACCCTTCCGGTACATTTT+CGG	+	chr5.3:76523039-76523058	MS.gene64609:CDS	50.0%
!	CTTCCGGTACATTTTCGGCT+TGG	+	chr5.3:76523044-76523063	MS.gene64609:CDS	50.0%
!!	GGGTCGGTTTGGTACAAAGA+CGG	-	chr5.3:76523025-76523044	None:intergenic	50.0%
	AAAGACGGTGACCCGGTGTA+AGG	-	chr5.3:76523010-76523029	None:intergenic	55.0%
	AGACAACGTCGTTCTCTGCG+TGG	+	chr5.3:76522380-76522399	MS.gene64609:CDS	55.0%
	AGCGGCGTTACCTTTGCGAA+CGG	-	chr5.3:76522343-76522362	None:intergenic	55.0%
	AGTAGTGGTGTGCGGCCATT+TGG	+	chr5.3:76522956-76522975	MS.gene64609:CDS	55.0%
	ATGTACCGGAAGGGTCGGTT+TGG	-	chr5.3:76523036-76523055	None:intergenic	55.0%
	CAACTCGGGCCCGGTTTATA+AGG	-	chr5.3:76522844-76522863	None:intergenic	55.0%
	CGAGTCTTGCAGTTTGGCAG+CGG	-	chr5.3:76522415-76522434	None:intergenic	55.0%
	CTGCCAAACTGCAAGACTCG+AGG	+	chr5.3:76522415-76522434	MS.gene64609:CDS	55.0%
	GCTCTTGAAGCCGTTCGCAA+AGG	+	chr5.3:76522330-76522349	MS.gene64609:CDS	55.0%
	GGCTATCAGCTCGTTGCTTG+AGG	+	chr5.3:76523159-76523178	MS.gene64609:CDS	55.0%
	GGGCTTTCGACGTTGATCGT+TGG	+	chr5.3:76522977-76522996	MS.gene64609:CDS	55.0%
	GTAGTGGTGTGCGGCCATTT+GGG	+	chr5.3:76522957-76522976	MS.gene64609:CDS	55.0%
	TGTACCTCGAACGCCAACAG+CGG	-	chr5.3:76522361-76522380	None:intergenic	55.0%
	AGCAGAGAAGGCAGCTGCTG+AGG	+	chr5.3:76523786-76523805	MS.gene64609:CDS	60.0%
	CGCAAAGGTAACGCCGCTGT+TGG	+	chr5.3:76522345-76522364	MS.gene64609:CDS	60.0%
	TCTGGCATTCAACTCGGGCC+CGG	-	chr5.3:76522853-76522872	None:intergenic	60.0%
	AACGCCGCTGTTGGCGTTCG+AGG	+	chr5.3:76522354-76522373	MS.gene64609:CDS	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr5.3	gene	76522264	76523840	76522264	ID=MS.gene64609
chr5.3	mRNA	76522264	76523840	76522264	ID=MS.gene64609.t1;Parent=MS.gene64609
chr5.3	exon	76522264	76522436	76522264	ID=MS.gene64609.t1.exon1;Parent=MS.gene64609.t1
chr5.3	CDS	76522264	76522436	76522264	ID=cds.MS.gene64609.t1;Parent=MS.gene64609.t1
chr5.3	exon	76522766	76523180	76522766	ID=MS.gene64609.t1.exon2;Parent=MS.gene64609.t1
chr5.3	CDS	76522766	76523180	76522766	ID=cds.MS.gene64609.t1;Parent=MS.gene64609.t1
chr5.3	exon	76523679	76523840	76523679	ID=MS.gene64609.t1.exon3;Parent=MS.gene64609.t1
chr5.3	CDS	76523679	76523840	76523679	ID=cds.MS.gene64609.t1;Parent=MS.gene64609.t1

Gene Sequence

>MS.gene64609

ATGTCTCGGTATGATAGAGCTATCACAGTTTTCTCTCCTGATGGTCATCTCTTCCAAGTAGAGTATGCTCTTGAAGCCGTTCGCAAAGGTAACGCCGCTGTTGGCGTTCGAGGTACAGACAACGTCGTTCTCTGCGTGGAGAAAAAATCCGCTGCCAAACTGCAAGACTCGAGGTTAGATTTCACACTTTTTAGTGTTACACCATGCAATAAATTCCATGCTAGGTTAATCTGGATTCTAGGGTTTAAAACTCGATGATCAAGAATTGAGGACACTTGCATCATAGTATATCTTACCTTTTTTTTTTTGCTTTTATTATAAATTGTAACTTGAATCCTGTTGTATAATGCTCCGTTGCTCAACTAGAACTATAAGCAATTTTTTTCTTTTTCTTTCTTTCTTATACATCTGCTATATAGAAGTATATCCAACCAAACTGCTTATAATATATATAATATATGGATTTGGGTTTTTTTATAAACATTTTGCTTTTGTTTTGAAGATTGGTGAGGAAGATTGTTAGTTTGGATGATCATGTTGCTCTTGCTTGTGCTGGACTAAAAGCCGATGCTCGTGTCCTTATAAACCGGGCCCGAGTTGAATGCCAGAGTCATAGACTTACCGTTGAGGATCCTTGTACTGTGGAATACATAACCCGTTACATTGCAGGTCTTCAGCAAAAGTACACACAGAGTAGTGGTGTGCGGCCATTTGGGCTTTCGACGTTGATCGTTGGTTTTGATCCTTACACCGGGTCACCGTCTTTGTACCAAACCGACCCTTCCGGTACATTTTCGGCTTGGAAAGCTAACGCAACCGGAAGAAACTCAAGTTCAATCCGTGAGTTTCTAGAGAAGAACTATAAAGACACCTCTGGGCAAGAAACTGTCAAATTGGCTATCAGCTCGTTGCTTGAGGTGAGTTAATTTTTGTCTTCTTTAATGCTTTTGAAATAAATATATATGATACCTATCATTCATTTATATAGCTTGTATGCTGCAACTTGTGCAAGATATTATTTTTTCTTGCTAGATGATATATAGGTGATGTCATTCTCCGCTCTTTCCATGTATATGTCTTTTACTATTTTAAACGCTGAGTGTGACTTTGGATTTGGAACAACTTTTAAGAGTGTCTTCAGTTCTTTATGTTTTCACTTTGCAAAATAAATGCATGGGGACGGAATGACCTTAACATAATTATTTGACTGCATATTAGGATGATGTTGAGTCATGATATTATATTCATGTGCATTGAATAAGATTGAAGCACAAATCTTATCAAATGTATGTTTGTGTTAACATTTACCTGTCTTTAATCTATGAAAGTAATTTTGTTTTTTGCTACTGCATAATTATTTATATAATACTATTATAGGGTAGTATTTTCATTTGGTTTTTCCTACATGTAATTAGGTTGTTGAGAGTGGAGGGAAGAACATTGAAGTTGCTGTGATGACCAAGGAGAATGGTCTGCGTCAACTAGAGGAAGCTGAAATTGACGCCATTGTCGCTGAGATTGAAGCAGAGAAGGCAGCTGCTGAGGCTGCAAAGAAAGTTCCTCCCAAGGACACATGA

Protein sequence

>MS.gene64609.t1

MSRYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDNVVLCVEKKSAAKLQDSRLVRKIVSLDDHVALACAGLKADARVLINRARVECQSHRLTVEDPCTVEYITRYIAGLQQKYTQSSGVRPFGLSTLIVGFDPYTGSPSLYQTDPSGTFSAWKANATGRNSSSIREFLEKNYKDTSGQETVKLAISSLLEVVESGGKNIEVAVMTKENGLRQLEEAEIDAIVAEIEAEKAAAEAAKKVPPKDT