Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012131.t1 | XP_003629279.1 | 99.6 | 249 | 1 | 0 | 1 | 249 | 1 | 249 | 5.90E-131 | 476.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012131.t1 | Q9SXU1 | 98.0 | 249 | 5 | 0 | 1 | 249 | 1 | 249 | 1.9e-130 | 466.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012131.t1 | G7LB82 | 99.6 | 249 | 1 | 0 | 1 | 249 | 1 | 249 | 4.2e-131 | 476.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012131.t1 | MTR_8g075320 | 99.598 | 249 | 1 | 0 | 1 | 249 | 1 | 249 | 0.0 | 509 |
| MS.gene012131.t1 | MTR_2g016050 | 91.667 | 228 | 19 | 0 | 1 | 228 | 1 | 228 | 7.80e-157 | 436 |
| MS.gene012131.t1 | MTR_7g070070 | 42.500 | 200 | 112 | 3 | 3 | 200 | 4 | 202 | 3.82e-53 | 172 |
| MS.gene012131.t1 | MTR_0167s0060 | 38.462 | 234 | 139 | 3 | 2 | 232 | 4 | 235 | 4.98e-53 | 171 |
| MS.gene012131.t1 | MTR_5g016590 | 42.500 | 200 | 112 | 3 | 3 | 200 | 4 | 202 | 7.55e-53 | 172 |
| MS.gene012131.t1 | MTR_1g112250 | 40.171 | 234 | 130 | 5 | 4 | 231 | 8 | 237 | 6.64e-51 | 166 |
| MS.gene012131.t1 | MTR_8g464460 | 38.428 | 229 | 133 | 5 | 4 | 225 | 9 | 236 | 3.38e-42 | 144 |
| MS.gene012131.t1 | MTR_2g060830 | 39.394 | 231 | 128 | 7 | 4 | 225 | 9 | 236 | 9.56e-42 | 143 |
| MS.gene012131.t1 | MTR_1g022410 | 37.736 | 212 | 123 | 4 | 3 | 211 | 5 | 210 | 3.08e-37 | 132 |
| MS.gene012131.t1 | MTR_6g024135 | 35.260 | 173 | 110 | 1 | 4 | 176 | 8 | 178 | 2.09e-29 | 111 |
| MS.gene012131.t1 | MTR_4g012740 | 28.685 | 251 | 130 | 6 | 3 | 211 | 236 | 479 | 4.67e-19 | 86.3 |
| MS.gene012131.t1 | MTR_4g057090 | 29.545 | 176 | 115 | 4 | 25 | 196 | 110 | 280 | 1.38e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012131.t1 | AT5G66140 | 90.400 | 250 | 23 | 1 | 1 | 249 | 1 | 250 | 4.34e-156 | 434 |
| MS.gene012131.t1 | AT3G51260 | 89.956 | 229 | 22 | 1 | 1 | 228 | 1 | 229 | 4.58e-153 | 426 |
| MS.gene012131.t1 | AT3G51260 | 91.509 | 212 | 18 | 0 | 1 | 212 | 1 | 212 | 4.47e-146 | 408 |
| MS.gene012131.t1 | AT3G22110 | 43.000 | 200 | 111 | 3 | 3 | 200 | 4 | 202 | 4.86e-54 | 175 |
| MS.gene012131.t1 | AT1G53850 | 41.453 | 234 | 127 | 5 | 4 | 231 | 8 | 237 | 3.06e-52 | 170 |
| MS.gene012131.t1 | AT1G53850 | 41.453 | 234 | 127 | 5 | 4 | 231 | 8 | 237 | 3.06e-52 | 170 |
| MS.gene012131.t1 | AT3G14290 | 42.035 | 226 | 123 | 4 | 4 | 223 | 8 | 231 | 1.17e-51 | 168 |
| MS.gene012131.t1 | AT1G16470 | 38.462 | 234 | 139 | 3 | 2 | 232 | 4 | 235 | 1.96e-51 | 167 |
| MS.gene012131.t1 | AT1G16470 | 38.462 | 234 | 139 | 3 | 2 | 232 | 4 | 235 | 1.96e-51 | 167 |
| MS.gene012131.t1 | AT1G79210 | 38.462 | 234 | 139 | 3 | 2 | 232 | 4 | 235 | 2.98e-51 | 167 |
| MS.gene012131.t1 | AT1G79210 | 38.462 | 234 | 139 | 3 | 2 | 232 | 4 | 235 | 2.98e-51 | 167 |
| MS.gene012131.t1 | AT1G79210 | 38.462 | 234 | 139 | 3 | 2 | 232 | 4 | 235 | 2.98e-51 | 167 |
| MS.gene012131.t1 | AT5G35590 | 38.627 | 233 | 133 | 4 | 2 | 230 | 7 | 233 | 1.11e-43 | 148 |
| MS.gene012131.t1 | AT2G05840 | 38.961 | 231 | 133 | 5 | 2 | 225 | 7 | 236 | 5.86e-42 | 144 |
| MS.gene012131.t1 | AT2G05840 | 38.679 | 212 | 125 | 3 | 2 | 209 | 7 | 217 | 3.07e-41 | 141 |
| MS.gene012131.t1 | AT1G47250 | 35.714 | 238 | 139 | 5 | 3 | 232 | 5 | 236 | 1.60e-39 | 138 |
| MS.gene012131.t1 | AT5G42790 | 35.294 | 238 | 140 | 5 | 3 | 232 | 5 | 236 | 3.40e-38 | 135 |
| MS.gene012131.t1 | AT2G05840 | 38.144 | 194 | 115 | 3 | 2 | 191 | 7 | 199 | 2.13e-37 | 130 |
| MS.gene012131.t1 | AT4G15165 | 34.500 | 200 | 86 | 4 | 3 | 200 | 4 | 160 | 2.62e-33 | 120 |
| MS.gene012131.t1 | AT2G27020 | 34.054 | 185 | 119 | 2 | 4 | 187 | 8 | 190 | 5.54e-30 | 112 |
| MS.gene012131.t1 | AT2G27020 | 34.054 | 185 | 119 | 2 | 4 | 187 | 110 | 292 | 1.01e-28 | 111 |
Find 60 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACATTGCTCTTGCTTGTGC+TGG | 0.248856 | 8.4:+29857048 | MS.gene012131:CDS |
| AGTGGTGGTGTGCGGCCATT+TGG | 0.286590 | 8.4:+29857207 | MS.gene012131:CDS |
| CCGCTAAGCTTCAAGATTCT+AGG | 0.333653 | 8.4:+29856405 | MS.gene012131:CDS |
| TAAAATCATGTGTCCTTAAG+AGG | 0.395220 | 8.4:-29859041 | None:intergenic |
| CTGTACCAGACAGACCCTTC+TGG | 0.400393 | 8.4:+29857279 | MS.gene012131:CDS |
| GTGGTGGTGTGCGGCCATTT+GGG | 0.402302 | 8.4:+29857208 | MS.gene012131:CDS |
| CGACGGTGAGCCTGTGACTC+TGG | 0.410392 | 8.4:-29857119 | None:intergenic |
| ATGCTCGTGTCTTGATAAAC+CGG | 0.411856 | 8.4:+29857082 | MS.gene012131:CDS |
| GGAGCATGGTCTGCGTCAAT+TGG | 0.423486 | 8.4:+29858944 | MS.gene012131:CDS |
| GGGCTTTCCACCTTGATCGT+TGG | 0.461708 | 8.4:+29857228 | MS.gene012131:CDS |
| ATGTACCAGAAGGGTCTGTC+TGG | 0.465812 | 8.4:-29857284 | None:intergenic |
| ACATTGCTCTTGCTTGTGCT+GGG | 0.466582 | 8.4:+29857049 | MS.gene012131:CDS |
| AGTACGCTCTAGAAGCTGTT+AGG | 0.467619 | 8.4:+29856315 | MS.gene012131:CDS |
| TGCAAAGAAAGCTCCTCTTA+AGG | 0.470575 | 8.4:+29859028 | MS.gene012131:CDS |
| GGTATCGATAACGTCGTTCT+CGG | 0.470791 | 8.4:+29856365 | MS.gene012131:CDS |
| TCTGGCATTCAACGCGTGCC+CGG | 0.479291 | 8.4:-29857101 | None:intergenic |
| AACGCCGCCGTCGGTGTTCG+CGG | 0.483392 | 8.4:+29856344 | MS.gene012131:CDS |
| AGAGAGGGAGACCCGGTGTA+AGG | 0.485987 | 8.4:-29857258 | None:intergenic |
| GCATGGAAGGCAAATGCCAC+TGG | 0.502242 | 8.4:+29857312 | MS.gene012131:CDS |
| CGCTCTAGAAGCTGTTAGGA+AGG | 0.506646 | 8.4:+29856319 | MS.gene012131:CDS |
| ATCAAGGTGGAAAGCCCAAA+TGG | 0.513612 | 8.4:-29857222 | None:intergenic |
| TGGACAGGAAACTGTGAAGT+TGG | 0.514356 | 8.4:+29857389 | MS.gene012131:CDS |
| AGGATCAAAGCCAACGATCA+AGG | 0.514570 | 8.4:-29857238 | None:intergenic |
| GCGTTGAATGCCAGAGTCAC+AGG | 0.514781 | 8.4:+29857109 | MS.gene012131:CDS |
| CCTAGAATCTTGAAGCTTAG+CGG | 0.516530 | 8.4:-29856405 | None:intergenic |
| GCTGGAGACCAGCTATGTAC+CGG | 0.520483 | 8.4:-29857170 | None:intergenic |
| TTTCATTAGGTTGTCGAGAG+TGG | 0.524980 | 8.4:+29858888 | MS.gene012131:intron |
| AACTCACTTCAAGCAAAGCT+CGG | 0.527308 | 8.4:-29857416 | None:intergenic |
| TATATTACCCGGTACATAGC+TGG | 0.536354 | 8.4:+29857162 | MS.gene012131:CDS |
| ATCGATACCGCGAACACCGA+CGG | 0.539173 | 8.4:-29856351 | None:intergenic |
| AGCAGAGAAAGCAGCTGCTG+AGG | 0.545135 | 8.4:+29859004 | MS.gene012131:CDS |
| GCATGGTCTGCGTCAATTGG+AGG | 0.554989 | 8.4:+29858947 | MS.gene012131:CDS |
| GTTGGCTTTGATCCTTACAC+CGG | 0.563925 | 8.4:+29857246 | MS.gene012131:CDS |
| CATTAGGTTGTCGAGAGTGG+TGG | 0.568275 | 8.4:+29858891 | MS.gene012131:intron |
| GTAATATACTCCACAGTGCA+TGG | 0.569706 | 8.4:-29857147 | None:intergenic |
| AGGAAGGGTAACGCCGCCGT+CGG | 0.581917 | 8.4:+29856335 | MS.gene012131:CDS |
| CGAATTCGAGTTTCTGCCAG+TGG | 0.583434 | 8.4:-29857328 | None:intergenic |
| CATGCTGAAAATGTACCAGA+AGG | 0.592585 | 8.4:-29857294 | None:intergenic |
| CTGGTACAGAGAGGGAGACC+CGG | 0.593324 | 8.4:-29857265 | None:intergenic |
| CTGGAGACCAGCTATGTACC+GGG | 0.601992 | 8.4:-29857169 | None:intergenic |
| TGAAGTTGCTGTGATGACTA+AGG | 0.602522 | 8.4:+29858923 | MS.gene012131:CDS |
| CACAGTGCATGGATCTTCGA+CGG | 0.606013 | 8.4:-29857136 | None:intergenic |
| CAGCAAAAGTACACGCAAAG+TGG | 0.610161 | 8.4:+29857189 | MS.gene012131:CDS |
| GGGTCTGTCTGGTACAGAGA+GGG | 0.610535 | 8.4:-29857273 | None:intergenic |
| CTTCACAGTTTCCTGTCCAG+AGG | 0.615209 | 8.4:-29857385 | None:intergenic |
| TGCTCGTGTCTTGATAAACC+GGG | 0.619876 | 8.4:+29857083 | MS.gene012131:CDS |
| ACACGCAAAGTGGTGGTGTG+CGG | 0.627734 | 8.4:+29857199 | MS.gene012131:CDS |
| AGAATCTTGAAGCTTAGCGG+TGG | 0.631552 | 8.4:-29856402 | None:intergenic |
| TTGGCTTTGATCCTTACACC+GGG | 0.640792 | 8.4:+29857247 | MS.gene012131:CDS |
| CAAAAGTACACGCAAAGTGG+TGG | 0.643467 | 8.4:+29857192 | MS.gene012131:CDS |
| ATGCTGAAAATGTACCAGAA+GGG | 0.645655 | 8.4:-29857293 | None:intergenic |
| TGCTTCAATCTCAGCCACAA+TGG | 0.649006 | 8.4:-29858985 | None:intergenic |
| GCTCTAGAAGCTGTTAGGAA+GGG | 0.668408 | 8.4:+29856320 | MS.gene012131:CDS |
| AGCTGAAATTGACGCCATTG+TGG | 0.670967 | 8.4:+29858971 | MS.gene012131:CDS |
| GCACTGTGGAGTATATTACC+CGG | 0.676466 | 8.4:+29857151 | MS.gene012131:CDS |
| AGGGTCTGTCTGGTACAGAG+AGG | 0.681482 | 8.4:-29857274 | None:intergenic |
| ATCAAAGCCAACGATCAAGG+TGG | 0.692772 | 8.4:-29857235 | None:intergenic |
| GCTGTGATGACTAAGGAGCA+TGG | 0.699226 | 8.4:+29858930 | MS.gene012131:CDS |
| CGTCGAAGATCCATGCACTG+TGG | 0.702839 | 8.4:+29857137 | MS.gene012131:CDS |
| GATACCGCGAACACCGACGG+CGG | 0.718572 | 8.4:-29856348 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGAAACTAATTATATTTA+GGG | - | chr8.4:29858229-29858248 | None:intergenic | 10.0% |
| !! | AATAATGAAAAAGAATATAA+AGG | + | chr8.4:29858167-29858186 | MS.gene012131:intron | 10.0% |
| !! | ATAATGAAAAAGAATATAAA+GGG | + | chr8.4:29858168-29858187 | MS.gene012131:intron | 10.0% |
| !! | ATATAATATAATATGGATTT+GGG | + | chr8.4:29856962-29856981 | MS.gene012131:intron | 10.0% |
| !!! | ATTTTGTTATACTAAAAAAT+TGG | - | chr8.4:29858150-29858169 | None:intergenic | 10.0% |
| !!! | TAAAAAGTAATTAAAAGTTT+TGG | - | chr8.4:29858709-29858728 | None:intergenic | 10.0% |
| !! | ATTCTATCATTCATTTATAT+AGG | + | chr8.4:29857477-29857496 | MS.gene012131:intron | 15.0% |
| !! | CATATAATATAATATGGATT+TGG | + | chr8.4:29856961-29856980 | MS.gene012131:intron | 15.0% |
| !! | GAAAGAAACTAATTATATTT+AGG | - | chr8.4:29858230-29858249 | None:intergenic | 15.0% |
| !!! | TTGAATTTAATTTTGAGATT+GGG | + | chr8.4:29856632-29856651 | MS.gene012131:intron | 15.0% |
| !!! | TTTGAATTTAATTTTGAGAT+TGG | + | chr8.4:29856631-29856650 | MS.gene012131:intron | 15.0% |
| !! | AAAAAAAGTAAAAATCACGT+GGG | + | chr8.4:29858295-29858314 | MS.gene012131:intron | 20.0% |
| !! | AAATTCCAAACAAAATTTCT+AGG | - | chr8.4:29856549-29856568 | None:intergenic | 20.0% |
| !! | AGAACCTATTTGTTTATATA+CGG | + | chr8.4:29856851-29856870 | MS.gene012131:intron | 20.0% |
| !! | ATATGATATTATAAGCAGTA+TGG | - | chr8.4:29856946-29856965 | None:intergenic | 20.0% |
| !! | CTCAAATGAATGTTAAAAAA+GGG | - | chr8.4:29857842-29857861 | None:intergenic | 20.0% |
| !! | GCTATATAAAAAAAGAACTA+TGG | - | chr8.4:29856905-29856924 | None:intergenic | 20.0% |
| !! | TCTCAAATGAATGTTAAAAA+AGG | - | chr8.4:29857843-29857862 | None:intergenic | 20.0% |
| !! | TCTGATAAATACTTTACATT+TGG | + | chr8.4:29858863-29858882 | MS.gene012131:intron | 20.0% |
| !! | TGTACATTCAAACATTATAA+TGG | + | chr8.4:29858758-29858777 | MS.gene012131:intron | 20.0% |
| !!! | AGTAACTTTTGTTTTACATT+TGG | + | chr8.4:29858833-29858852 | MS.gene012131:intron | 20.0% |
| !!! | ATACTACTATCAACAAATTT+TGG | + | chr8.4:29858098-29858117 | MS.gene012131:intron | 20.0% |
| !!! | TGATTTTCATTTCTCAAATT+CGG | + | chr8.4:29856464-29856483 | MS.gene012131:intron | 20.0% |
| !!! | TTTATCCTAGAAATTTTGTT+TGG | + | chr8.4:29856541-29856560 | MS.gene012131:intron | 20.0% |
| ! | AAAAAAGTAAAAATCACGTG+GGG | + | chr8.4:29858296-29858315 | MS.gene012131:intron | 25.0% |
| ! | AAATCATTTGACTGCAAATT+AGG | + | chr8.4:29857671-29857690 | MS.gene012131:intron | 25.0% |
| ! | AATGAATATCTTTCTAACAC+GGG | - | chr8.4:29857717-29857736 | None:intergenic | 25.0% |
| ! | ATACCCGTATATAAACAAAT+AGG | - | chr8.4:29856858-29856877 | None:intergenic | 25.0% |
| ! | GAAAAAAAGTAAAAATCACG+TGG | + | chr8.4:29858294-29858313 | MS.gene012131:intron | 25.0% |
| ! | GAACCTATTTGTTTATATAC+GGG | + | chr8.4:29856852-29856871 | MS.gene012131:intron | 25.0% |
| ! | GAATGAATATCTTTCTAACA+CGG | - | chr8.4:29857718-29857737 | None:intergenic | 25.0% |
| ! | GCATAACTGTAATACTATTA+TGG | + | chr8.4:29858807-29858826 | MS.gene012131:intron | 25.0% |
| ! | GTGTTAGAAAGATATTCATT+CGG | + | chr8.4:29857717-29857736 | MS.gene012131:intron | 25.0% |
| ! | TTAGAATCTTAGATCTAGTT+TGG | + | chr8.4:29856677-29856696 | MS.gene012131:intron | 25.0% |
| !! | AAAATACCAATAAGCTTGTT+CGG | - | chr8.4:29856776-29856795 | None:intergenic | 25.0% |
| !! | TAGATCTAGTTTGGAAATAA+GGG | + | chr8.4:29856686-29856705 | MS.gene012131:intron | 25.0% |
| !! | TTAGATCTAGTTTGGAAATA+AGG | + | chr8.4:29856685-29856704 | MS.gene012131:intron | 25.0% |
| !! | TTTTTCTTGCTAGAAGATAT+AGG | + | chr8.4:29857524-29857543 | MS.gene012131:intron | 25.0% |
| !!! | AATTCTTTTCTAGAAACTCA+CGG | - | chr8.4:29857356-29857375 | None:intergenic | 25.0% |
| !!! | TCATTTTGCTTTTATTTTGC+AGG | + | chr8.4:29856995-29857014 | MS.gene012131:intron | 25.0% |
| !!! | TTTACATTTGGCTTTTCATT+AGG | + | chr8.4:29858875-29858894 | MS.gene012131:intron | 25.0% |
| !!! | TTTTGTTTTACATTTGGAAC+TGG | + | chr8.4:29858839-29858858 | MS.gene012131:intron | 25.0% |
| AAAAAGTAAAAATCACGTGG+GGG | + | chr8.4:29858297-29858316 | MS.gene012131:intron | 30.0% | |
| AATATAAAGGGTCAAAGTAG+AGG | + | chr8.4:29858180-29858199 | MS.gene012131:intron | 30.0% | |
| AGATATTCATTCGGTTAATC+TGG | + | chr8.4:29857726-29857745 | MS.gene012131:intron | 30.0% | |
| ATAACGAATTTGCACGAATT+GGG | + | chr8.4:29858489-29858508 | MS.gene012131:intron | 30.0% | |
| CAAATTCGTTATGTAATTCC+TGG | - | chr8.4:29858481-29858500 | None:intergenic | 30.0% | |
| GATATTCATTCGGTTAATCT+GGG | + | chr8.4:29857727-29857746 | MS.gene012131:intron | 30.0% | |
| TAGTATTACAGTTATGCAAC+AGG | - | chr8.4:29858804-29858823 | None:intergenic | 30.0% | |
| TTCGCTATCTATGAAGAATT+CGG | + | chr8.4:29858016-29858035 | MS.gene012131:intron | 30.0% | |
| TTTATGATATTCCTAGCTGA+TGG | + | chr8.4:29858725-29858744 | MS.gene012131:intron | 30.0% | |
| ! | GATTTGCTTTACCAAAACAT+TGG | + | chr8.4:29858322-29858341 | MS.gene012131:intron | 30.0% |
| ! | GCAGTCAAATGATTTTGTTA+AGG | - | chr8.4:29857666-29857685 | None:intergenic | 30.0% |
| ! | TAACAAAGAAGAAGCTGTTT+TGG | - | chr8.4:29858364-29858383 | None:intergenic | 30.0% |
| !! | AAGAATTTTAAAGAGACCTC+TGG | + | chr8.4:29857369-29857388 | MS.gene012131:CDS | 30.0% |
| !! | TTTTATGATGTTGACTACCT+AGG | + | chr8.4:29857560-29857579 | MS.gene012131:intron | 30.0% |
| AAAAGTAAAAATCACGTGGG+GGG | + | chr8.4:29858298-29858317 | MS.gene012131:intron | 35.0% | |
| AATTGCGAATCTGGTAACTA+TGG | - | chr8.4:29857962-29857981 | None:intergenic | 35.0% | |
| ACCATAATCTAGTGGTTATC+AGG | + | chr8.4:29858272-29858291 | MS.gene012131:intron | 35.0% | |
| ACTTGAAAAAGATGACCATC+GGG | - | chr8.4:29856293-29856312 | None:intergenic | 35.0% | |
| AGCCAAAAACCAATAGAAAG+TGG | - | chr8.4:29858425-29858444 | None:intergenic | 35.0% | |
| ATGAAGAATTCGGTACATGA+AGG | + | chr8.4:29858026-29858045 | MS.gene012131:intron | 35.0% | |
| ATGCTGAAAATGTACCAGAA+GGG | - | chr8.4:29857296-29857315 | None:intergenic | 35.0% | |
| CATAACGAATTTGCACGAAT+TGG | + | chr8.4:29858488-29858507 | MS.gene012131:intron | 35.0% | |
| GACTTGAAAAAGATGACCAT+CGG | - | chr8.4:29856294-29856313 | None:intergenic | 35.0% | |
| GCCAAAAACCAATAGAAAGT+GGG | - | chr8.4:29858424-29858443 | None:intergenic | 35.0% | |
| TCATTTGACTGCAAATTAGG+AGG | + | chr8.4:29857674-29857693 | MS.gene012131:intron | 35.0% | |
| TCCTGATAACCACTAGATTA+TGG | - | chr8.4:29858276-29858295 | None:intergenic | 35.0% | |
| TGAAGAATTCGGTACATGAA+GGG | + | chr8.4:29858027-29858046 | MS.gene012131:intron | 35.0% | |
| TGCAAATTAGGAGGAAGTTT+AGG | + | chr8.4:29857683-29857702 | MS.gene012131:intron | 35.0% | |
| TGTTGATCAACAATCAGAAG+AGG | - | chr8.4:29857871-29857890 | None:intergenic | 35.0% | |
| TTCTATCACCCACTTTCTAT+TGG | + | chr8.4:29858413-29858432 | MS.gene012131:intron | 35.0% | |
| ! | AAGCGGTTTTCAATAGAAAG+TGG | - | chr8.4:29858388-29858407 | None:intergenic | 35.0% |
| ! | GTGTTAGGTTTAGGATCTTA+GGG | + | chr8.4:29856486-29856505 | MS.gene012131:intron | 35.0% |
| ! | GTTTAGGATCTTAGGGTTTA+AGG | + | chr8.4:29856493-29856512 | MS.gene012131:intron | 35.0% |
| !! | CATTTCTCAAATTCGGTGTT+AGG | + | chr8.4:29856471-29856490 | MS.gene012131:intron | 35.0% |
| !! | TCAAATTCGGTGTTAGGTTT+AGG | + | chr8.4:29856477-29856496 | MS.gene012131:intron | 35.0% |
| !!! | AATTTGCTGCAACTTTTGCA+AGG | + | chr8.4:29857500-29857519 | MS.gene012131:intron | 35.0% |
| !!! | ACCCACTTTCTATTGGTTTT+TGG | + | chr8.4:29858420-29858439 | MS.gene012131:intron | 35.0% |
| !!! | ACTTTCTATTGGTTTTTGGC+TGG | + | chr8.4:29858424-29858443 | MS.gene012131:intron | 35.0% |
| !!! | GCTTTCGTTGTTGTTTTTCT+CGG | + | chr8.4:29856589-29856608 | MS.gene012131:intron | 35.0% |
| AACTCACTTCAAGCAAAGCT+CGG | - | chr8.4:29857419-29857438 | None:intergenic | 40.0% | |
| AAGCTTCAAGATTCTAGGTC+TGG | + | chr8.4:29856410-29856429 | MS.gene012131:intron | 40.0% | |
| ATGCTCGTGTCTTGATAAAC+CGG | + | chr8.4:29857082-29857101 | MS.gene012131:CDS | 40.0% | |
| ATTCCTAGCTGATGGTTGTA+TGG | + | chr8.4:29858733-29858752 | MS.gene012131:intron | 40.0% | |
| CAAAGACCGAACAAGCTTAT+TGG | + | chr8.4:29856767-29856786 | MS.gene012131:intron | 40.0% | |
| CATGCTGAAAATGTACCAGA+AGG | - | chr8.4:29857297-29857316 | None:intergenic | 40.0% | |
| CCTAGAATCTTGAAGCTTAG+CGG | - | chr8.4:29856408-29856427 | None:intergenic | 40.0% | |
| CGTTATGTAATTCCTGGAAG+TGG | - | chr8.4:29858475-29858494 | None:intergenic | 40.0% | |
| CTTAAATCCTGCTATGCACT+GGG | + | chr8.4:29857797-29857816 | MS.gene012131:intron | 40.0% | |
| CTTGAAAAAGATGACCATCG+GGG | - | chr8.4:29856292-29856311 | None:intergenic | 40.0% | |
| GAAGAATTCGGTACATGAAG+GGG | + | chr8.4:29858028-29858047 | MS.gene012131:intron | 40.0% | |
| GCATAGCAGGATTTAAGGAA+TGG | - | chr8.4:29857794-29857813 | None:intergenic | 40.0% | |
| GTAATATACTCCACAGTGCA+TGG | - | chr8.4:29857150-29857169 | None:intergenic | 40.0% | |
| TATATTACCCGGTACATAGC+TGG | + | chr8.4:29857162-29857181 | MS.gene012131:CDS | 40.0% | |
| TCATTCGGTTAATCTGGGTT+TGG | + | chr8.4:29857732-29857751 | MS.gene012131:intron | 40.0% | |
| TGAAGTTGCTGTGATGACTA+AGG | + | chr8.4:29858923-29858942 | MS.gene012131:CDS | 40.0% | |
| TGCAAAGAAAGCTCCTCTTA+AGG | + | chr8.4:29859028-29859047 | MS.gene012131:CDS | 40.0% | |
| TGGGTGATAGAAAGATGAAG+CGG | - | chr8.4:29858405-29858424 | None:intergenic | 40.0% | |
| TTGAAAAAGATGACCATCGG+GGG | - | chr8.4:29856291-29856310 | None:intergenic | 40.0% | |
| ! | ATTATGGTGATGCACGTGAT+TGG | - | chr8.4:29858260-29858279 | None:intergenic | 40.0% |
| ! | CTTAGGGTTTAAGGTGTGAT+CGG | + | chr8.4:29856502-29856521 | MS.gene012131:intron | 40.0% |
| ! | CTTCTGGTACATTTTCAGCA+TGG | + | chr8.4:29857295-29857314 | MS.gene012131:CDS | 40.0% |
| ! | GGTGTTAGGTTTAGGATCTT+AGG | + | chr8.4:29856485-29856504 | MS.gene012131:intron | 40.0% |
| ! | TGAAGCGGTTTCCAATGTTT+TGG | - | chr8.4:29858336-29858355 | None:intergenic | 40.0% |
| ! | TGGTACATTTTCAGCATGGA+AGG | + | chr8.4:29857299-29857318 | MS.gene012131:CDS | 40.0% |
| ! | TTTCATTAGGTTGTCGAGAG+TGG | + | chr8.4:29858888-29858907 | MS.gene012131:intron | 40.0% |
| !! | TTTTAAAGAGACCTCTGGAC+AGG | + | chr8.4:29857374-29857393 | MS.gene012131:CDS | 40.0% |
| !!! | GCTGTTTTGGAAAGATGAAG+CGG | - | chr8.4:29858351-29858370 | None:intergenic | 40.0% |
| AAGCCATACAACCATCAGCT+AGG | - | chr8.4:29858739-29858758 | None:intergenic | 45.0% | |
| ACATTGCTCTTGCTTGTGCT+GGG | + | chr8.4:29857049-29857068 | MS.gene012131:CDS | 45.0% | |
| ACTACCTAGGAGTGGTACTT+TGG | + | chr8.4:29857573-29857592 | MS.gene012131:intron | 45.0% | |
| AGAATCTTGAAGCTTAGCGG+TGG | - | chr8.4:29856405-29856424 | None:intergenic | 45.0% | |
| AGCTGAAATTGACGCCATTG+TGG | + | chr8.4:29858971-29858990 | MS.gene012131:CDS | 45.0% | |
| AGGATCAAAGCCAACGATCA+AGG | - | chr8.4:29857241-29857260 | None:intergenic | 45.0% | |
| ATATAAGCCCAGTGCATAGC+AGG | - | chr8.4:29857807-29857826 | None:intergenic | 45.0% | |
| ATCAAAGCCAACGATCAAGG+TGG | - | chr8.4:29857238-29857257 | None:intergenic | 45.0% | |
| ATCAAGGTGGAAAGCCCAAA+TGG | - | chr8.4:29857225-29857244 | None:intergenic | 45.0% | |
| CCAACAATTTACCCACACTG+TGG | + | chr8.4:29857761-29857780 | MS.gene012131:intron | 45.0% | |
| CCACAGTGTGGGTAAATTGT+TGG | - | chr8.4:29857764-29857783 | None:intergenic | 45.0% | |
| CCAGTGCATAGCAGGATTTA+AGG | - | chr8.4:29857799-29857818 | None:intergenic | 45.0% | |
| CCGCTAAGCTTCAAGATTCT+AGG | + | chr8.4:29856405-29856424 | MS.gene012131:CDS | 45.0% | |
| CCTTAAATCCTGCTATGCAC+TGG | + | chr8.4:29857796-29857815 | MS.gene012131:intron | 45.0% | |
| CGTGCATCACCATAATCTAG+TGG | + | chr8.4:29858264-29858283 | MS.gene012131:intron | 45.0% | |
| GCACTGTGGAGTATATTACC+CGG | + | chr8.4:29857151-29857170 | MS.gene012131:CDS | 45.0% | |
| GTCTGCATTGTATAGCTAGC+AGG | - | chr8.4:29857940-29857959 | None:intergenic | 45.0% | |
| TACCAGATTCGCAATTCGCT+GGG | + | chr8.4:29857966-29857985 | MS.gene012131:intron | 45.0% | |
| TGCTCGTGTCTTGATAAACC+GGG | + | chr8.4:29857083-29857102 | MS.gene012131:CDS | 45.0% | |
| TGCTTCAATCTCAGCCACAA+TGG | - | chr8.4:29858988-29859007 | None:intergenic | 45.0% | |
| TGGACAGGAAACTGTGAAGT+TGG | + | chr8.4:29857389-29857408 | MS.gene012131:CDS | 45.0% | |
| TTACCAGATTCGCAATTCGC+TGG | + | chr8.4:29857965-29857984 | MS.gene012131:intron | 45.0% | |
| ! | CAAAAGTACACGCAAAGTGG+TGG | + | chr8.4:29857192-29857211 | MS.gene012131:CDS | 45.0% |
| ! | CACTTTGCGTGTACTTTTGC+TGG | - | chr8.4:29857191-29857210 | None:intergenic | 45.0% |
| ! | CAGCAAAAGTACACGCAAAG+TGG | + | chr8.4:29857189-29857208 | MS.gene012131:CDS | 45.0% |
| ! | TCTTCCAAAGTACCACTCCT+AGG | - | chr8.4:29857580-29857599 | None:intergenic | 45.0% |
| ! | TGATGTTGACTACCTAGGAG+TGG | + | chr8.4:29857565-29857584 | MS.gene012131:intron | 45.0% |
| !! | AATTGGTTCGCGGTTTGCAT+GGG | + | chr8.4:29858543-29858562 | MS.gene012131:intron | 45.0% |
| !! | AGTACGCTCTAGAAGCTGTT+AGG | + | chr8.4:29856315-29856334 | MS.gene012131:CDS | 45.0% |
| !! | GCTCTAGAAGCTGTTAGGAA+GGG | + | chr8.4:29856320-29856339 | MS.gene012131:CDS | 45.0% |
| !! | GGTATCGATAACGTCGTTCT+CGG | + | chr8.4:29856365-29856384 | MS.gene012131:CDS | 45.0% |
| !! | GTTGGCTTTGATCCTTACAC+CGG | + | chr8.4:29857246-29857265 | MS.gene012131:CDS | 45.0% |
| !! | TTGGCTTTGATCCTTACACC+GGG | + | chr8.4:29857247-29857266 | MS.gene012131:CDS | 45.0% |
| !! | TAATATCATATAATATAATA+TGG | + | chr8.4:29856955-29856974 | MS.gene012131:intron | 5.0% |
| AACGCAAAAGAACCGCGAAC+CGG | + | chr8.4:29858512-29858531 | MS.gene012131:intron | 50.0% | |
| AATGGTCAGAGACCACAGTG+TGG | - | chr8.4:29857776-29857795 | None:intergenic | 50.0% | |
| AATTCGCTGGGTACGTGGTA+CGG | + | chr8.4:29857978-29857997 | MS.gene012131:intron | 50.0% | |
| ATGGTCAGAGACCACAGTGT+GGG | - | chr8.4:29857775-29857794 | None:intergenic | 50.0% | |
| ATGTACCAGAAGGGTCTGTC+TGG | - | chr8.4:29857287-29857306 | None:intergenic | 50.0% | |
| CACAGTGCATGGATCTTCGA+CGG | - | chr8.4:29857139-29857158 | None:intergenic | 50.0% | |
| CACATTGCTCTTGCTTGTGC+TGG | + | chr8.4:29857048-29857067 | MS.gene012131:CDS | 50.0% | |
| CTTCACAGTTTCCTGTCCAG+AGG | - | chr8.4:29857388-29857407 | None:intergenic | 50.0% | |
| GCTGTGATGACTAAGGAGCA+TGG | + | chr8.4:29858930-29858949 | MS.gene012131:CDS | 50.0% | |
| GTGGCGAATCGTGTTGAAGA+TGG | - | chr8.4:29858456-29858475 | None:intergenic | 50.0% | |
| TACACAGAGTCGGTACGCTA+GGG | + | chr8.4:29858051-29858070 | MS.gene012131:intron | 50.0% | |
| TACCCAGCGAATTGCGAATC+TGG | - | chr8.4:29857971-29857990 | None:intergenic | 50.0% | |
| ! | CATGAAGGGGTACACAGAGT+CGG | + | chr8.4:29858041-29858060 | MS.gene012131:intron | 50.0% |
| ! | CATTAGGTTGTCGAGAGTGG+TGG | + | chr8.4:29858891-29858910 | MS.gene012131:intron | 50.0% |
| ! | CGAATTCGAGTTTCTGCCAG+TGG | - | chr8.4:29857331-29857350 | None:intergenic | 50.0% |
| !! | CGCTCTAGAAGCTGTTAGGA+AGG | + | chr8.4:29856319-29856338 | MS.gene012131:CDS | 50.0% |
| !! | GAATTGGTTCGCGGTTTGCA+TGG | + | chr8.4:29858542-29858561 | MS.gene012131:intron | 50.0% |
| AGCAGAGAAAGCAGCTGCTG+AGG | + | chr8.4:29859004-29859023 | MS.gene012131:CDS | 55.0% | |
| AGGGTCTGTCTGGTACAGAG+AGG | - | chr8.4:29857277-29857296 | None:intergenic | 55.0% | |
| ATCACAGTGTTCTCCCCCGA+TGG | + | chr8.4:29856275-29856294 | MS.gene012131:CDS | 55.0% | |
| ATCGATACCGCGAACACCGA+CGG | - | chr8.4:29856354-29856373 | None:intergenic | 55.0% | |
| ATTCGCTGGGTACGTGGTAC+GGG | + | chr8.4:29857979-29857998 | MS.gene012131:intron | 55.0% | |
| CAACACGATTCGCCACTTCC+AGG | + | chr8.4:29858460-29858479 | MS.gene012131:intron | 55.0% | |
| CGTCGAAGATCCATGCACTG+TGG | + | chr8.4:29857137-29857156 | MS.gene012131:CDS | 55.0% | |
| CTGGAGACCAGCTATGTACC+GGG | - | chr8.4:29857172-29857191 | None:intergenic | 55.0% | |
| CTGTACCAGACAGACCCTTC+TGG | + | chr8.4:29857279-29857298 | MS.gene012131:CDS | 55.0% | |
| GCATGGAAGGCAAATGCCAC+TGG | + | chr8.4:29857312-29857331 | MS.gene012131:CDS | 55.0% | |
| GCATGGTCTGCGTCAATTGG+AGG | + | chr8.4:29858947-29858966 | MS.gene012131:CDS | 55.0% | |
| GCGTTGAATGCCAGAGTCAC+AGG | + | chr8.4:29857109-29857128 | MS.gene012131:CDS | 55.0% | |
| GCTGGAGACCAGCTATGTAC+CGG | - | chr8.4:29857173-29857192 | None:intergenic | 55.0% | |
| GGAGCATGGTCTGCGTCAAT+TGG | + | chr8.4:29858944-29858963 | MS.gene012131:CDS | 55.0% | |
| GGGCTTTCCACCTTGATCGT+TGG | + | chr8.4:29857228-29857247 | MS.gene012131:CDS | 55.0% | |
| GGGTCTGTCTGGTACAGAGA+GGG | - | chr8.4:29857276-29857295 | None:intergenic | 55.0% | |
| GTACACAGAGTCGGTACGCT+AGG | + | chr8.4:29858050-29858069 | MS.gene012131:intron | 55.0% | |
| TTCGCAATTCGCTGGGTACG+TGG | + | chr8.4:29857973-29857992 | MS.gene012131:intron | 55.0% | |
| ! | ACACGCAAAGTGGTGGTGTG+CGG | + | chr8.4:29857199-29857218 | MS.gene012131:CDS | 55.0% |
| !! | GCATGGGTTGGCAGCGAATT+AGG | + | chr8.4:29858559-29858578 | MS.gene012131:intron | 55.0% |
| AGAGAGGGAGACCCGGTGTA+AGG | - | chr8.4:29857261-29857280 | None:intergenic | 60.0% | |
| CTGGTACAGAGAGGGAGACC+CGG | - | chr8.4:29857268-29857287 | None:intergenic | 60.0% | |
| GCGAACCAATTCGCGCGTAC+CGG | - | chr8.4:29858534-29858553 | None:intergenic | 60.0% | |
| GGTTCGCGGTTTGCATGGGT+TGG | + | chr8.4:29858547-29858566 | MS.gene012131:intron | 60.0% | |
| TCTGGCATTCAACGCGTGCC+CGG | - | chr8.4:29857104-29857123 | None:intergenic | 60.0% | |
| ! | AGTGGTGGTGTGCGGCCATT+TGG | + | chr8.4:29857207-29857226 | MS.gene012131:CDS | 60.0% |
| ! | GTGGTGGTGTGCGGCCATTT+GGG | + | chr8.4:29857208-29857227 | MS.gene012131:CDS | 60.0% |
| !! | AATTCGCGCGTACCGGTTCG+CGG | - | chr8.4:29858527-29858546 | None:intergenic | 60.0% |
| !! | GGTACGCGCGAATTGGTTCG+CGG | + | chr8.4:29858533-29858552 | MS.gene012131:intron | 60.0% |
| AGGAAGGGTAACGCCGCCGT+CGG | + | chr8.4:29856335-29856354 | MS.gene012131:CDS | 65.0% | |
| CGACGGTGAGCCTGTGACTC+TGG | - | chr8.4:29857122-29857141 | None:intergenic | 65.0% | |
| GATACCGCGAACACCGACGG+CGG | - | chr8.4:29856351-29856370 | None:intergenic | 65.0% | |
| GCGAACCGGTACGCGCGAAT+TGG | + | chr8.4:29858526-29858545 | MS.gene012131:intron | 65.0% | |
| GGGTACGTGGTACGGGTACG+CGG | + | chr8.4:29857986-29858005 | MS.gene012131:intron | 65.0% | |
| TGGTACGGGTACGCGGTACG+CGG | + | chr8.4:29857993-29858012 | MS.gene012131:intron | 65.0% | |
| ! | AACGCCGCCGTCGGTGTTCG+CGG | + | chr8.4:29856344-29856363 | MS.gene012131:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 29856254 | 29859058 | 29856254 | ID=MS.gene012131 |
| chr8.4 | mRNA | 29856254 | 29859058 | 29856254 | ID=MS.gene012131.t1;Parent=MS.gene012131 |
| chr8.4 | exon | 29856254 | 29856426 | 29856254 | ID=MS.gene012131.t1.exon1;Parent=MS.gene012131.t1 |
| chr8.4 | CDS | 29856254 | 29856426 | 29856254 | ID=cds.MS.gene012131.t1;Parent=MS.gene012131.t1 |
| chr8.4 | exon | 29857017 | 29857431 | 29857017 | ID=MS.gene012131.t1.exon2;Parent=MS.gene012131.t1 |
| chr8.4 | CDS | 29857017 | 29857431 | 29857017 | ID=cds.MS.gene012131.t1;Parent=MS.gene012131.t1 |
| chr8.4 | exon | 29858897 | 29859058 | 29858897 | ID=MS.gene012131.t1.exon3;Parent=MS.gene012131.t1 |
| chr8.4 | CDS | 29858897 | 29859058 | 29858897 | ID=cds.MS.gene012131.t1;Parent=MS.gene012131.t1 |
| Gene Sequence |
| Protein sequence |
