AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene042955

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene042955.t1 MTR_6g086340 97.600 500 11 1 1 499 1 500 0.0 1002
MS.gene042955.t1 MTR_6g086300 82.004 489 88 0 11 499 14 502 0.0 830
MS.gene042955.t1 MTR_6g086300 82.004 489 88 0 11 499 14 502 0.0 830
MS.gene042955.t1 MTR_8g083530 76.986 491 113 0 9 499 13 503 0.0 802
MS.gene042955.t1 MTR_8g083520 75.103 486 88 1 14 499 9 461 0.0 769
MS.gene042955.t1 MTR_8g083520 74.638 414 72 1 86 499 1 381 0.0 650
MS.gene042955.t1 MTR_4g107040 55.052 485 218 0 15 499 60 544 0.0 575
MS.gene042955.t1 MTR_3g078170 55.579 484 215 0 16 499 59 542 0.0 571
MS.gene042955.t1 MTR_8g064170 55.372 484 216 0 16 499 58 541 0.0 567
MS.gene042955.t1 MTR_8g083530 74.551 334 85 0 9 342 13 346 0.0 528
MS.gene042955.t1 MTR_8g064170 51.446 484 203 1 16 499 58 509 0.0 517
MS.gene042955.t1 MTR_3g078170 54.271 398 182 0 16 413 59 456 4.51e-157 454
MS.gene042955.t1 MTR_3g078170 53.887 373 172 0 16 388 59 431 8.84e-145 422
MS.gene042955.t1 MTR_3g078170 53.887 373 172 0 16 388 59 431 1.72e-144 422
MS.gene042955.t1 MTR_3g078550 41.379 493 278 5 15 498 4 494 1.94e-122 368
MS.gene042955.t1 MTR_4g106510 41.935 496 269 7 16 498 5 494 8.80e-120 361
MS.gene042955.t1 MTR_3g078490 40.491 489 280 5 19 498 38 524 2.61e-118 358
MS.gene042955.t1 MTR_3g078550 42.358 458 253 5 50 498 9 464 6.28e-115 347
MS.gene042955.t1 MTR_2g067660 35.729 487 307 5 4 489 33 514 7.81e-102 315
MS.gene042955.t1 MTR_1690s0010 41.040 346 197 5 19 361 9 350 3.93e-77 246
MS.gene042955.t1 MTR_3g078490 39.583 336 194 4 19 347 8 341 9.23e-69 224
MS.gene042955.t1 MTR_4g131180 29.979 487 318 10 20 497 17 489 9.21e-58 199
MS.gene042955.t1 MTR_1g014320 29.218 486 320 10 22 494 19 493 1.63e-57 199
MS.gene042955.t1 MTR_2g009750 31.524 479 308 11 22 489 18 487 1.65e-57 199
MS.gene042955.t1 MTR_4g093170 31.942 479 306 11 22 489 45 514 1.94e-57 199
MS.gene042955.t1 MTR_2g009750 31.381 478 309 11 22 489 17 485 5.85e-57 197
MS.gene042955.t1 MTR_2g009750 31.381 478 309 11 22 489 18 486 6.16e-57 197
MS.gene042955.t1 MTR_2g034160 28.964 473 314 11 32 489 62 527 2.56e-56 197
MS.gene042955.t1 MTR_4g131180 30.159 441 289 8 20 452 17 446 3.17e-55 192
MS.gene042955.t1 MTR_2g042330 27.950 483 331 12 22 496 25 498 3.45e-53 187
MS.gene042955.t1 MTR_1399s0020 27.224 371 218 4 119 487 15 335 2.01e-33 130
MS.gene042955.t1 MTR_8g076480 30.117 342 225 10 153 489 106 438 1.40e-29 121
MS.gene042955.t1 MTR_8g094600 27.536 345 240 7 155 496 168 505 5.21e-28 117
MS.gene042955.t1 MTR_2g097950 27.660 423 271 16 91 494 51 457 9.02e-28 116
MS.gene042955.t1 MTR_1g029840 27.907 387 255 13 109 489 77 445 1.70e-27 115
MS.gene042955.t1 MTR_1g029840 27.907 387 255 13 109 489 77 445 2.90e-27 115
MS.gene042955.t1 MTR_1222s0010 30.841 321 189 15 155 460 105 407 9.36e-27 114
MS.gene042955.t1 MTR_3g088150 27.219 338 236 8 155 489 117 447 3.77e-25 108
MS.gene042955.t1 MTR_1314s0010 27.762 353 221 9 156 490 1 337 1.02e-24 105
MS.gene042955.t1 MTR_2g097950 27.033 418 245 16 91 494 51 422 1.71e-23 103
MS.gene042955.t1 MTR_4g065040 28.013 307 200 9 155 452 104 398 1.08e-19 92.4
MS.gene042955.t1 MTR_0002s0820 44.211 95 45 2 218 304 58 152 1.33e-13 68.9
MS.gene042955.t1 MTR_1g071870 70.732 41 12 0 441 481 227 267 3.32e-13 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene042955.t1 AT3G24503 69.592 490 148 1 11 499 12 501 0.0 729
MS.gene042955.t1 AT3G48000 55.372 484 216 0 16 499 55 538 0.0 576
MS.gene042955.t1 AT1G23800 55.165 484 217 0 16 499 51 534 0.0 564
MS.gene042955.t1 AT3G48170 43.662 497 261 8 15 498 4 494 6.71e-139 410
MS.gene042955.t1 AT1G74920 42.800 500 266 7 11 498 3 494 7.66e-134 397
MS.gene042955.t1 AT1G74920 42.600 500 262 8 11 498 3 489 1.40e-131 391
MS.gene042955.t1 AT1G23800 53.453 333 155 0 16 348 51 383 1.67e-123 367
MS.gene042955.t1 AT1G79440 37.740 469 287 4 22 489 56 520 1.56e-100 312
MS.gene042955.t1 AT2G14170 32.777 479 302 11 22 489 8 477 2.34e-62 212
MS.gene042955.t1 AT2G14170 32.777 479 302 11 22 489 117 586 3.29e-61 211
MS.gene042955.t1 AT2G14170 33.485 439 275 9 22 452 117 546 1.05e-60 209
MS.gene042955.t1 AT2G24270 30.966 507 310 13 10 495 7 494 5.13e-60 206
MS.gene042955.t1 AT2G24270 30.966 507 310 13 10 495 7 494 5.26e-60 205
MS.gene042955.t1 AT2G24270 30.966 507 310 13 10 495 7 494 5.26e-60 205
MS.gene042955.t1 AT2G24270 30.966 507 310 13 10 495 47 534 1.42e-59 205
MS.gene042955.t1 AT1G54100 28.810 479 314 13 32 496 32 497 3.12e-54 190
MS.gene042955.t1 AT1G54100 28.810 479 314 13 32 496 32 497 3.12e-54 190
MS.gene042955.t1 AT3G66658 29.325 474 311 12 32 489 62 527 1.14e-53 190
MS.gene042955.t1 AT3G66658 29.325 474 311 12 32 489 62 527 2.42e-53 189
MS.gene042955.t1 AT1G44170 30.606 330 209 11 155 476 48 365 2.17e-30 123
MS.gene042955.t1 AT1G44170 30.029 343 220 11 155 489 111 441 3.22e-30 123
MS.gene042955.t1 AT1G44170 30.029 343 220 11 155 489 111 441 3.22e-30 123
MS.gene042955.t1 AT4G34240 28.916 332 212 10 155 476 32 349 2.41e-24 105
MS.gene042955.t1 AT4G36250 25.850 441 296 15 52 476 2 427 4.64e-24 105
MS.gene042955.t1 AT4G34240 28.916 332 212 10 155 476 174 491 8.66e-24 105
MS.gene042955.t1 AT4G34240 28.916 332 212 10 155 476 159 476 1.17e-23 104
MS.gene042955.t1 AT4G34240 36.424 151 85 5 155 301 174 317 8.68e-12 67.4

Find 111 sgRNAs with CRISPR-Local

Find 313 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGGTAGCTTCTGCTATTT+TGG 0.126135 6.4:+59787410 None:intergenic
CCTCTTGGTTCTGTTCAATT+AGG 0.137624 6.4:+59786117 None:intergenic
GTAATCACTTCTTCTGTTCT+TGG 0.154923 6.4:+59787432 None:intergenic
TTTGATATTGATTGCCCTTT+TGG 0.202054 6.4:-59783488 MS.gene042955:CDS
CTCTTGGTTCTGTTCAATTA+GGG 0.225108 6.4:+59786118 None:intergenic
TGGGGTCCTTGTTGAACTTT+AGG 0.227903 6.4:+59784483 None:intergenic
CCCTGCTGCTAAGCCATATT+TGG 0.239067 6.4:+59783595 None:intergenic
GCTGTTGATCTTGCTCTATT+TGG 0.241282 6.4:-59784717 MS.gene042955:CDS
AGGGATTGTGACAAAGAATT+TGG 0.263862 6.4:-59783576 MS.gene042955:CDS
ATTCATCGTAAATCCCTTCT+TGG 0.275084 6.4:+59784562 None:intergenic
ATAGCACAAGATGAAATATT+TGG 0.277460 6.4:-59784065 MS.gene042955:CDS
TGAAATATTTGGACCTGTTA+TGG 0.283168 6.4:-59784054 MS.gene042955:CDS
AGTGGATATGGAAGAGATTA+TGG 0.289197 6.4:-59783452 MS.gene042955:CDS
AGCAATATCAACATCTTCTT+TGG 0.291243 6.4:+59787392 None:intergenic
GAATTCGTGGACTCAGTTTC+AGG 0.291763 6.4:-59788343 MS.gene042955:intron
CACTTCTCCATGAACTTTAT+CGG 0.292029 6.4:+59785989 None:intergenic
AAGCCGGTATCGCTTGAATT+AGG 0.297707 6.4:-59784786 MS.gene042955:CDS
ATTCTTTCCATGTTTAATAT+AGG 0.304720 6.4:+59784281 None:intergenic
GAGAAGTGTTCAAAACTTCT+AGG 0.308999 6.4:-59785974 MS.gene042955:CDS
TGCTAAGGCTGCTCCTTGTT+TGG 0.309023 6.4:-59785868 MS.gene042955:CDS
ATAGGAGAGAGCAAAGATTA+TGG 0.315733 6.4:-59786153 MS.gene042955:intron
GGGTATAAGATGAGTGGATA+TGG 0.326692 6.4:-59783464 MS.gene042955:CDS
AAGGCCAACAATACCAAATA+TGG 0.331879 6.4:-59783608 MS.gene042955:CDS
ATTTGGTATCCTACACAATA+AGG 0.342928 6.4:-59784700 MS.gene042955:intron
CTTAATGTACTACCAGGATT+TGG 0.343037 6.4:-59785014 MS.gene042955:CDS
GAAGGAGCCACATTATTAAC+TGG 0.343248 6.4:-59784258 MS.gene042955:CDS
TAAGCCATATTTGGTATTGT+TGG 0.347953 6.4:+59783604 None:intergenic
GTGTTTGCTCAGCAGGCTTA+AGG 0.360744 6.4:+59785826 None:intergenic
TTTGGCTGCTGGTTGTACTA+TGG 0.362514 6.4:-59785850 MS.gene042955:CDS
AACTGTTATGTTCTTTGCTA+AGG 0.366049 6.4:-59785883 MS.gene042955:CDS
GAGCAAAGATTATGGTGAAA+TGG 0.367613 6.4:-59786145 MS.gene042955:CDS
CTTCTTAATTCCTTCCTCAA+TGG 0.367868 6.4:+59783628 None:intergenic
ACGTAGGATATTGGCTGCTT+CGG 0.376363 6.4:+59786028 None:intergenic
CAATTCGTGCAGGTATCATT+TGG 0.382886 6.4:-59783529 MS.gene042955:CDS
TTTACAGGTTCAACTGAAAC+AGG 0.388979 6.4:-59784846 MS.gene042955:CDS
CGTAGGATATTGGCTGCTTC+GGG 0.391620 6.4:+59786029 None:intergenic
GAGAGAGGTGTTTGCTCAGC+AGG 0.397287 6.4:+59785819 None:intergenic
GCTGCTCCTTGTTTGGCTGC+TGG 0.401272 6.4:-59785861 MS.gene042955:CDS
AGTACATTAAGCACTCCATC+TGG 0.402106 6.4:+59785026 None:intergenic
CCAATGCTGCTATTTCCTCT+TGG 0.405103 6.4:+59786102 None:intergenic
GGCATAGTAACGTAGGATAT+TGG 0.407458 6.4:+59786019 None:intergenic
ATGGAACCTATTGGTGTTGT+TGG 0.410360 6.4:-59785930 MS.gene042955:CDS
AGCCATGGAGAATTGTAAAT+AGG 0.411898 6.4:+59783383 None:intergenic
ACCAAATATGGCTTAGCAGC+AGG 0.418744 6.4:-59783596 MS.gene042955:CDS
GCAAGAGAAGCATTTGATAA+TGG 0.419949 6.4:-59787360 MS.gene042955:CDS
AGCAAAGATTATGGTGAAAT+GGG 0.429763 6.4:-59786144 MS.gene042955:CDS
AACTTAGAAAGTGCCATAAC+AGG 0.431254 6.4:+59784041 None:intergenic
ATGTGTCCAACAACACCAAT+AGG 0.433262 6.4:+59785924 None:intergenic
CCTCCTAATTCAAGCGATAC+CGG 0.435430 6.4:+59784783 None:intergenic
TCTTCACATGTATACCTTGA+TGG 0.444983 6.4:-59785949 MS.gene042955:CDS
CTCATCTTATACCCTCCAAA+AGG 0.454556 6.4:+59783473 None:intergenic
CCAAGAGGAAATAGCAGCAT+TGG 0.454749 6.4:-59786102 MS.gene042955:CDS
TGCTGCAATAACCTCGCATA+TGG 0.459694 6.4:-59784979 MS.gene042955:CDS
CCAGGATTTGGCTCAGAGGC+TGG 0.485201 6.4:-59785002 MS.gene042955:CDS
TGAGAAGAAAGTGCTTGAAA+AGG 0.488995 6.4:-59784538 MS.gene042955:CDS
AGATGAAAGTTTCAAAGCCA+TGG 0.490561 6.4:+59783368 None:intergenic
GGTGCAGCCGATAAAGTTCA+TGG 0.492690 6.4:-59785996 MS.gene042955:CDS
ATATTGCAAACACTGTTTCA+AGG 0.493347 6.4:-59783553 MS.gene042955:CDS
GCAGCATTGGATACAATTGA+TGG 0.494635 6.4:-59786089 MS.gene042955:CDS
TTTCATCAATGGAGAATTCG+TGG 0.498461 6.4:-59788356 MS.gene042955:CDS
ATTAAACATGGAAAGAATGA+AGG 0.512041 6.4:-59784276 MS.gene042955:CDS
AACAGGCCGTCGAGTAATGC+AGG 0.517213 6.4:-59784829 MS.gene042955:CDS
GGTCCATGGCCACGTATGCC+TGG 0.518148 6.4:-59787339 MS.gene042955:CDS
CCAGCCTCTGAGCCAAATCC+TGG 0.524200 6.4:+59785002 None:intergenic
CTCCTATTTACAATTCTCCA+TGG 0.530023 6.4:-59783385 MS.gene042955:CDS
TAGCAAAGAACATAACAGTT+GGG 0.536617 6.4:+59785886 None:intergenic
ATTCTTTCCTATATTAAACA+TGG 0.538136 6.4:-59784288 MS.gene042955:CDS
ATATGGAAGAGATTATGGAT+TGG 0.550655 6.4:-59783447 MS.gene042955:CDS
TATACCTTGATGGAACCTAT+TGG 0.551777 6.4:-59785939 MS.gene042955:CDS
CCAAATATGGCTTAGCAGCA+GGG 0.551779 6.4:-59783595 MS.gene042955:CDS
TGTTGAACTTTAGGATCGAA+AGG 0.551857 6.4:+59784492 None:intergenic
GCACCAGGCATACGTGGCCA+TGG 0.554932 6.4:+59787336 None:intergenic
GTTGAACTTTAGGATCGAAA+GGG 0.558232 6.4:+59784493 None:intergenic
ATCTAGGCTGGTATCCCAGA+TGG 0.558701 6.4:-59785041 MS.gene042955:intron
AATATCCTACGTTACTATGC+CGG 0.563081 6.4:-59786017 MS.gene042955:CDS
GTTTCAAGGTCAATTCGTGC+AGG 0.564958 6.4:-59783539 MS.gene042955:CDS
AAAAGGGCAATCAATATCAA+AGG 0.565522 6.4:+59783490 None:intergenic
TTGTTGGACACATTATACCT+TGG 0.569907 6.4:-59785914 MS.gene042955:CDS
GTTGAAATATACCTTAACAT+TGG 0.572651 6.4:+59784185 None:intergenic
TAAATATTGAAGGACCATTG+AGG 0.573357 6.4:-59783642 MS.gene042955:intron
ATGAACTTTATCGGCTGCAC+CGG 0.573497 6.4:+59785998 None:intergenic
GGTAAGCAAGTGGGAAACAA+AGG 0.576032 6.4:-59784234 MS.gene042955:CDS
GTACATTAAGCACTCCATCT+GGG 0.579218 6.4:+59785027 None:intergenic
TTAGCAAAGAACATAACAGT+TGG 0.580072 6.4:+59785885 None:intergenic
AGATTTGAACTTACAGCACC+AGG 0.585736 6.4:+59787321 None:intergenic
TTTGGAGGGTATAAGATGAG+TGG 0.586902 6.4:-59783470 MS.gene042955:CDS
TCATCTTATACCCTCCAAAA+GGG 0.587155 6.4:+59783474 None:intergenic
AAGGAGCCACATTATTAACT+GGG 0.587465 6.4:-59784257 MS.gene042955:CDS
ATAACAGTTGGGAAATTCCA+AGG 0.594259 6.4:+59785897 None:intergenic
ATGGAGGGAAACTATACAGT+TGG 0.597500 6.4:-59786070 MS.gene042955:CDS
AGCAATGAGCAATTTGAAGC+CGG 0.598148 6.4:-59784802 MS.gene042955:CDS
CCGGTATCGCTTGAATTAGG+AGG 0.607487 6.4:-59784783 MS.gene042955:CDS
CGCATCTATGTCCATATGCG+AGG 0.610521 6.4:+59784968 None:intergenic
TATTGAAGGACCATTGAGGA+AGG 0.617304 6.4:-59783638 MS.gene042955:intron
AACACCAATAGGTTCCATCA+AGG 0.617496 6.4:+59785935 None:intergenic
TATAGTTGGAATCTTTACAA+AGG 0.617841 6.4:+59788393 None:intergenic
CATTGAGGAAGGAATTAAGA+AGG 0.621050 6.4:-59783627 MS.gene042955:CDS
AAGCATTTGATAATGGTCCA+TGG 0.623184 6.4:-59787353 MS.gene042955:CDS
CTTACAGCACCAGGCATACG+TGG 0.623863 6.4:+59787330 None:intergenic
CTGCAGCCTGCATTACTCGA+CGG 0.627078 6.4:+59784823 None:intergenic
GGAGTGCTTAATGTACTACC+AGG 0.631643 6.4:-59785020 MS.gene042955:CDS
GCATTGGATACAATTGATGG+AGG 0.635584 6.4:-59786086 MS.gene042955:CDS
GTACAACCAGCAGCCAAACA+AGG 0.643727 6.4:+59785855 None:intergenic
CATTGGATACAATTGATGGA+GGG 0.663451 6.4:-59786085 MS.gene042955:CDS
CCTAATTGAACAGAACCAAG+AGG 0.673912 6.4:-59786117 MS.gene042955:CDS
ACTACCAGGATTTGGCTCAG+AGG 0.677751 6.4:-59785006 MS.gene042955:CDS
TTCGATCCTAAAGTTCAACA+AGG 0.679226 6.4:-59784489 MS.gene042955:CDS
CTCGCATATGGACATAGATG+CGG 0.685925 6.4:-59784967 MS.gene042955:intron
CTGCACCGGCATAGTAACGT+AGG 0.699221 6.4:+59786012 None:intergenic
AGGAGCCACATTATTAACTG+GGG 0.700677 6.4:-59784256 MS.gene042955:CDS
GGAGCCACATTATTAACTGG+GGG 0.710041 6.4:-59784255 MS.gene042955:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATATCAAAAATAGAAAT+AGG + chr6.4:59786697-59786716 None:intergenic 10.0%
!!! AAAATTTAAATTGACTTTTA+TGG - chr6.4:59784253-59784272 MS.gene042955:CDS 10.0%
!!! GAATATAATTTTTTTTTTTG+AGG - chr6.4:59783854-59783873 MS.gene042955:intron 10.0%
!!! TAATCTTTAAACTTTTTTTT+TGG + chr6.4:59783805-59783824 None:intergenic 10.0%
!!! TTTTTTGTTGAAATAAAAAA+AGG - chr6.4:59784320-59784339 MS.gene042955:intron 10.0%
!! AATGTTGAATTAAATATTGA+AGG - chr6.4:59788145-59788164 MS.gene042955:intron 15.0%
!! ATATTTCATAAATTATTGCA+AGG - chr6.4:59785169-59785188 MS.gene042955:intron 15.0%
!! ATTTGAACAATAAATTTGAA+TGG + chr6.4:59784711-59784730 None:intergenic 15.0%
!! CAATATTTAATTCAACATTT+CGG + chr6.4:59788144-59788163 None:intergenic 15.0%
!! CTTACTTTATATATTTAGTT+AGG + chr6.4:59783766-59783785 None:intergenic 15.0%
!! TATTTATAAATGTAATCAGA+GGG + chr6.4:59784764-59784783 None:intergenic 15.0%
!! TCAATTATCAAAATTCAATT+TGG - chr6.4:59784072-59784091 MS.gene042955:CDS 15.0%
!! TTATTTATAAATGTAATCAG+AGG + chr6.4:59784765-59784784 None:intergenic 15.0%
!!! ATCTTTTAAAACTAATTTCA+GGG + chr6.4:59788106-59788125 None:intergenic 15.0%
!!! ATGAATTATTTTTTGTCAAA+TGG + chr6.4:59783710-59783729 None:intergenic 15.0%
!!! GGAAATATAATTCTTTTATA+TGG - chr6.4:59783876-59783895 MS.gene042955:intron 15.0%
!!! TGATTTTAAAATCCAAAATA+GGG + chr6.4:59785414-59785433 None:intergenic 15.0%
!!! TTTTTTTTGAAAATTTGTGT+AGG - chr6.4:59787698-59787717 MS.gene042955:intron 15.0%
!! AAAAATATACCTTATTGTGT+AGG + chr6.4:59787109-59787128 None:intergenic 20.0%
!! ACGAAAATTAAAAAGAATTG+AGG + chr6.4:59783509-59783528 None:intergenic 20.0%
!! ACTATTAGAAAAAATGACAT+TGG - chr6.4:59784134-59784153 MS.gene042955:intron 20.0%
!! AGAAAGACAAAAAAAATGTA+AGG - chr6.4:59785320-59785339 MS.gene042955:intron 20.0%
!! AGCATAAAAAAACAAATTTG+TGG - chr6.4:59785086-59785105 MS.gene042955:intron 20.0%
!! ATTCTTTCCATGTTTAATAT+AGG + chr6.4:59787519-59787538 None:intergenic 20.0%
!! ATTCTTTCCTATATTAAACA+TGG - chr6.4:59787509-59787528 MS.gene042955:intron 20.0%
!! TAAGGAATGTATAAAATAAG+TGG - chr6.4:59785338-59785357 MS.gene042955:intron 20.0%
!! TGATATACTTATATGCATAT+TGG - chr6.4:59784296-59784315 MS.gene042955:CDS 20.0%
!! TGTCAAATCATAGATATATA+GGG - chr6.4:59784197-59784216 MS.gene042955:CDS 20.0%
!! TTAACATTGGTAAAAATAGT+AGG + chr6.4:59787602-59787621 None:intergenic 20.0%
!! TTCACAAAATAATTTCATGT+GGG - chr6.4:59784945-59784964 MS.gene042955:intron 20.0%
!! TTGTAAAATTGTCATTGTTA+AGG + chr6.4:59785032-59785051 None:intergenic 20.0%
!! TTGTCAAATCATAGATATAT+AGG - chr6.4:59784196-59784215 MS.gene042955:intron 20.0%
!! TTTCACAAAATAATTTCATG+TGG - chr6.4:59784944-59784963 MS.gene042955:intron 20.0%
!!! AATGTCATTTTTTCTAATAG+TGG + chr6.4:59784135-59784154 None:intergenic 20.0%
!!! AGATTCTAGAAAATTATATC+AGG + chr6.4:59786255-59786274 None:intergenic 20.0%
!!! AGCTTTTTAAACTTTATAGT+TGG + chr6.4:59783421-59783440 None:intergenic 20.0%
!!! ATATATTTTCATCCATGTAT+TGG + chr6.4:59786644-59786663 None:intergenic 20.0%
!!! ATTTTTTCTAATAGTGGAAA+TGG + chr6.4:59784129-59784148 None:intergenic 20.0%
!!! CAACTTGTGATATAATTTTT+GGG - chr6.4:59784166-59784185 MS.gene042955:intron 20.0%
!!! CATCTTTTAAAACTAATTTC+AGG + chr6.4:59788107-59788126 None:intergenic 20.0%
!!! CTAATTTTTTCATGTTTTAC+AGG - chr6.4:59786923-59786942 MS.gene042955:intron 20.0%
!!! CTGATTTTAAAATCCAAAAT+AGG + chr6.4:59785415-59785434 None:intergenic 20.0%
!!! GAATTGATTTTTGACATTTT+TGG - chr6.4:59784607-59784626 MS.gene042955:intron 20.0%
!!! GATTCTAGAAAATTATATCA+GGG + chr6.4:59786254-59786273 None:intergenic 20.0%
!!! GGATTTTAAAATCAGAAAAA+TGG - chr6.4:59785420-59785439 MS.gene042955:intron 20.0%
!!! TAATACTTTTTTTCCAACAT+TGG - chr6.4:59784533-59784552 MS.gene042955:CDS 20.0%
!!! TACTATTTTTACCAATGTTA+AGG - chr6.4:59787601-59787620 MS.gene042955:intron 20.0%
!!! TCAACTTGTGATATAATTTT+TGG - chr6.4:59784165-59784184 MS.gene042955:intron 20.0%
!!! TTAAAGAAAATTTGTTGAGT+TGG - chr6.4:59786038-59786057 MS.gene042955:CDS 20.0%
!!! TTTAAAAAGCTTTTCATCAA+TGG - chr6.4:59783430-59783449 MS.gene042955:CDS 20.0%
!!! TTTAAAATCAGAAAAATGGA+GGG - chr6.4:59785424-59785443 MS.gene042955:intron 20.0%
!!! TTTTAAAATCAGAAAAATGG+AGG - chr6.4:59785423-59785442 MS.gene042955:intron 20.0%
! AAAATTGTCATTGTTAAGGT+TGG + chr6.4:59785028-59785047 None:intergenic 25.0%
! AAATAATTCATACCTTTGTG+CGG - chr6.4:59783719-59783738 MS.gene042955:intron 25.0%
! AAATTCACAATCAAGCAATT+TGG - chr6.4:59786140-59786159 MS.gene042955:CDS 25.0%
! AATATTGTGTTAGTGTTATC+GGG + chr6.4:59787956-59787975 None:intergenic 25.0%
! ACCTTAGATACTAAGATTTA+GGG + chr6.4:59786596-59786615 None:intergenic 25.0%
! ACGCACTTTATAATTAGAAT+CGG - chr6.4:59787415-59787434 MS.gene042955:CDS 25.0%
! ACTTTATAATTAGAATCGGA+AGG - chr6.4:59787419-59787438 MS.gene042955:CDS 25.0%
! AGATCAAATCTACTCAAAAA+CGG + chr6.4:59785055-59785074 None:intergenic 25.0%
! ATAGCACAAGATGAAATATT+TGG - chr6.4:59787732-59787751 MS.gene042955:intron 25.0%
! ATATAATCCGAAATGTTGTA+GGG - chr6.4:59785487-59785506 MS.gene042955:intron 25.0%
! ATGATCAAGATCATTTGAAA+TGG - chr6.4:59787388-59787407 MS.gene042955:CDS 25.0%
! ATGTCTTCAATATAAAAGTG+TGG + chr6.4:59787925-59787944 None:intergenic 25.0%
! ATTAAACATGGAAAGAATGA+AGG - chr6.4:59787521-59787540 MS.gene042955:intron 25.0%
! ATTGATCTCTGTATATATCA+TGG + chr6.4:59784057-59784076 None:intergenic 25.0%
! ATTTGCCATCATATTAAGAT+TGG + chr6.4:59786540-59786559 None:intergenic 25.0%
! CAATATTGTGTTAGTGTTAT+CGG + chr6.4:59787957-59787976 None:intergenic 25.0%
! CATTAAATAACTGATGTATC+TGG - chr6.4:59784803-59784822 MS.gene042955:CDS 25.0%
! GCATCATCAAAAATTAAAAC+AGG + chr6.4:59787047-59787066 None:intergenic 25.0%
! GTCAAATCATAGATATATAG+GGG - chr6.4:59784198-59784217 MS.gene042955:CDS 25.0%
! GTTGAAATATACCTTAACAT+TGG + chr6.4:59787615-59787634 None:intergenic 25.0%
! GTTTAAAAAAAGTTTGTGAC+CGG + chr6.4:59788084-59788103 None:intergenic 25.0%
! TAAGAGATTGAGTTTATGTT+AGG - chr6.4:59784979-59784998 MS.gene042955:CDS 25.0%
! TATAGTTGGAATCTTTACAA+AGG + chr6.4:59783407-59783426 None:intergenic 25.0%
! TATATAATCCGAAATGTTGT+AGG - chr6.4:59785486-59785505 MS.gene042955:intron 25.0%
! TGAGTTTATGTTAGGAATTA+CGG - chr6.4:59784987-59785006 MS.gene042955:CDS 25.0%
! TGCTTATAAATATCACCAAA+GGG - chr6.4:59784880-59784899 MS.gene042955:intron 25.0%
! TTCGGATTATATAATTCGAA+AGG + chr6.4:59785479-59785498 None:intergenic 25.0%
! TTCTTTGTGTGAAAATTTGT+TGG + chr6.4:59785561-59785580 None:intergenic 25.0%
! TTGCTTATAAATATCACCAA+AGG - chr6.4:59784879-59784898 MS.gene042955:intron 25.0%
!! AAATTATATCAGGGTGTTAT+AGG + chr6.4:59786245-59786264 None:intergenic 25.0%
!! ATAAGGTATATTTTTCTTCG+AGG - chr6.4:59787114-59787133 MS.gene042955:intron 25.0%
!! ATTTAAAACCTTGACTAAGA+TGG + chr6.4:59787812-59787831 None:intergenic 25.0%
!! ATTTTTCTTCGAGGAAAATT+TGG - chr6.4:59787123-59787142 MS.gene042955:intron 25.0%
!! CAACATGCATTAATTTGATA+TGG - chr6.4:59785607-59785626 MS.gene042955:intron 25.0%
!! TTGAATCTGATTTTCAAAGT+CGG - chr6.4:59786207-59786226 MS.gene042955:intron 25.0%
!!! ATCTAGTTGGTTTTTTTCTA+AGG - chr6.4:59785229-59785248 MS.gene042955:intron 25.0%
!!! ATTTGTTTTTTTATGCTTCG+AGG + chr6.4:59785083-59785102 None:intergenic 25.0%
!!! GAACTTGATTTGTTTTTGAA+GGG - chr6.4:59786117-59786136 MS.gene042955:CDS 25.0%
!!! TGTTACACGAACTTTAAAAT+AGG + chr6.4:59784505-59784524 None:intergenic 25.0%
!!! TTTGTTTTTTTATGCTTCGA+GGG + chr6.4:59785082-59785101 None:intergenic 25.0%
!!! TTTTCTTATACACTCTGAAA+GGG + chr6.4:59785290-59785309 None:intergenic 25.0%
AAAAATGGAGGGTTTATTGT+GGG - chr6.4:59785435-59785454 MS.gene042955:intron 30.0%
AAAAGGGCAATCAATATCAA+AGG + chr6.4:59788310-59788329 None:intergenic 30.0%
AACAAATTTGTGGAGTTTCT+TGG - chr6.4:59785096-59785115 MS.gene042955:intron 30.0%
AACTCAATCTCTTATAGAAG+TGG + chr6.4:59784973-59784992 None:intergenic 30.0%
AACTGTTATGTTCTTTGCTA+AGG - chr6.4:59785914-59785933 MS.gene042955:CDS 30.0%
ACCCTAAATCTTAGTATCTA+AGG - chr6.4:59786592-59786611 MS.gene042955:intron 30.0%
ACTCAATCTCTTATAGAAGT+GGG + chr6.4:59784972-59784991 None:intergenic 30.0%
AGCAAAGATTATGGTGAAAT+GGG - chr6.4:59785653-59785672 MS.gene042955:intron 30.0%
AGCAATATCAACATCTTCTT+TGG + chr6.4:59784408-59784427 None:intergenic 30.0%
ATATGGAAGAGATTATGGAT+TGG - chr6.4:59788350-59788369 MS.gene042955:CDS 30.0%
ATATTGCAAACACTGTTTCA+AGG - chr6.4:59788244-59788263 MS.gene042955:intron 30.0%
ATCACGGATACATTATCATA+CGG - chr6.4:59786378-59786397 MS.gene042955:intron 30.0%
ATGCCTTCAATATAAAGTGT+CGG - chr6.4:59788029-59788048 MS.gene042955:intron 30.0%
ATTTGGTATCCTACACAATA+AGG - chr6.4:59787097-59787116 MS.gene042955:intron 30.0%
CAAGGATATTTGATATCTTG+AGG - chr6.4:59783620-59783639 MS.gene042955:CDS 30.0%
CACCTTAGATACTAAGATTT+AGG + chr6.4:59786597-59786616 None:intergenic 30.0%
CAGTTTGAGTGAATCTTTAA+TGG + chr6.4:59786891-59786910 None:intergenic 30.0%
CATAAACGCATTAGATACAA+AGG + chr6.4:59786344-59786363 None:intergenic 30.0%
CATGAAATGTCAATTAAGTG+AGG + chr6.4:59783542-59783561 None:intergenic 30.0%
CATTAAAGATTCACTCAAAC+TGG - chr6.4:59786889-59786908 MS.gene042955:intron 30.0%
CCATGTTTCATAATTCATCT+AGG - chr6.4:59786740-59786759 MS.gene042955:intron 30.0%
CCTAGATGAATTATGAAACA+TGG + chr6.4:59786743-59786762 None:intergenic 30.0%
CTATGAATTCTCTTACTACA+AGG + chr6.4:59786426-59786445 None:intergenic 30.0%
GAAGTCCAATCTTAATATGA+TGG - chr6.4:59786532-59786551 MS.gene042955:intron 30.0%
GAATTCATAGTCAATCAGTT+TGG - chr6.4:59786436-59786455 MS.gene042955:intron 30.0%
GCTTGAAAAGGTGAAAAATT+GGG - chr6.4:59787271-59787290 MS.gene042955:intron 30.0%
GTAAGCTATCCTATCTAAAT+TGG + chr6.4:59786467-59786486 None:intergenic 30.0%
TAAATATTGAAGGACCATTG+AGG - chr6.4:59788155-59788174 MS.gene042955:intron 30.0%
TAACATAGTGTTCATGATGT+TGG - chr6.4:59783964-59783983 MS.gene042955:intron 30.0%
TAAGCCATATTTGGTATTGT+TGG + chr6.4:59788196-59788215 None:intergenic 30.0%
TAAGGTGATCACAATAAAAG+AGG - chr6.4:59785247-59785266 MS.gene042955:intron 30.0%
TAGCAAAGAACATAACAGTT+GGG + chr6.4:59785914-59785933 None:intergenic 30.0%
TATATGAGTAGTCATCTAGT+TGG - chr6.4:59785216-59785235 MS.gene042955:intron 30.0%
TCAGATTCAAAATACCAAGT+CGG + chr6.4:59786197-59786216 None:intergenic 30.0%
TCAGTTATGAGAATGACATA+AGG + chr6.4:59787657-59787676 None:intergenic 30.0%
TCATAGATATATAGGGGTAA+TGG - chr6.4:59784204-59784223 MS.gene042955:CDS 30.0%
TGAAATATTTGGACCTGTTA+TGG - chr6.4:59787743-59787762 MS.gene042955:intron 30.0%
TGCTTGAAAAGGTGAAAAAT+TGG - chr6.4:59787270-59787289 MS.gene042955:intron 30.0%
TTAGCAAAGAACATAACAGT+TGG + chr6.4:59785915-59785934 None:intergenic 30.0%
TTATTAGCATCACCAATACA+TGG - chr6.4:59786629-59786648 MS.gene042955:intron 30.0%
! AGGTAACTCTTGTAATTTTC+AGG - chr6.4:59787178-59787197 MS.gene042955:intron 30.0%
! ATGGTCATGAACTGTTTTAT+AGG - chr6.4:59785626-59785645 MS.gene042955:intron 30.0%
! CTTTTCTTATACACTCTGAA+AGG + chr6.4:59785291-59785310 None:intergenic 30.0%
! GGAAATGGAATGCATATTTT+TGG + chr6.4:59784114-59784133 None:intergenic 30.0%
! GGTAACTCTTGTAATTTTCA+GGG - chr6.4:59787179-59787198 MS.gene042955:intron 30.0%
! TCTTCAATATAAAAGTGTGG+TGG + chr6.4:59787922-59787941 None:intergenic 30.0%
!! AGAACAAAGACTTGTTACTT+AGG - chr6.4:59787158-59787177 MS.gene042955:intron 30.0%
!! TGCTTTCTAGTTAAGAACAT+TGG + chr6.4:59785589-59785608 None:intergenic 30.0%
!! TGTTTAGTTTGTTAGCATCA+CGG - chr6.4:59786362-59786381 MS.gene042955:intron 30.0%
!! TTGAATCCGATTTTGAAAGT+CGG - chr6.4:59786504-59786523 MS.gene042955:intron 30.0%
!! TTTGATATTGATTGCCCTTT+TGG - chr6.4:59788309-59788328 MS.gene042955:intron 30.0%
!!! GGAACTTGATTTGTTTTTGA+AGG - chr6.4:59786116-59786135 MS.gene042955:CDS 30.0%
!!! TTGACATTTTTGGTTGTTCT+CGG - chr6.4:59784617-59784636 MS.gene042955:intron 30.0%
!!! TTTTTTTGCTCATCTTGCTA+AGG - chr6.4:59786007-59786026 MS.gene042955:CDS 30.0%
AAAAAATACACACCGCACAA+AGG + chr6.4:59783734-59783753 None:intergenic 35.0%
AAAAGTTTGTGACCGGAATT+TGG + chr6.4:59788077-59788096 None:intergenic 35.0%
AAAGTTTGTGACCGGAATTT+GGG + chr6.4:59788076-59788095 None:intergenic 35.0%
AACCAAACATACACCAATGT+TGG + chr6.4:59784549-59784568 None:intergenic 35.0%
AAGGAGCCACATTATTAACT+GGG - chr6.4:59787540-59787559 MS.gene042955:intron 35.0%
AAGGCCAACAATACCAAATA+TGG - chr6.4:59788189-59788208 MS.gene042955:intron 35.0%
AATATCCTACGTTACTATGC+CGG - chr6.4:59785780-59785799 MS.gene042955:intron 35.0%
AGCCATGGAGAATTGTAAAT+AGG + chr6.4:59788417-59788436 None:intergenic 35.0%
AGGGATTGTGACAAAGAATT+TGG - chr6.4:59788221-59788240 MS.gene042955:intron 35.0%
AGTGGATATGGAAGAGATTA+TGG - chr6.4:59788345-59788364 MS.gene042955:CDS 35.0%
ATAACAGTTGGGAAATTCCA+AGG + chr6.4:59785903-59785922 None:intergenic 35.0%
ATAGGAGAGAGCAAAGATTA+TGG - chr6.4:59785644-59785663 MS.gene042955:intron 35.0%
ATCATGTGCAAATGAGATGT+TGG + chr6.4:59787454-59787473 None:intergenic 35.0%
ATTCATCGTAAATCCCTTCT+TGG + chr6.4:59787238-59787257 None:intergenic 35.0%
CAACTCAAATTACAAGTGCA+AGG - chr6.4:59783602-59783621 MS.gene042955:CDS 35.0%
CACTTCTCCATGAACTTTAT+CGG + chr6.4:59785811-59785830 None:intergenic 35.0%
CACTTTCCGACTTTCAAAAT+CGG + chr6.4:59786513-59786532 None:intergenic 35.0%
CATTGAGGAAGGAATTAAGA+AGG - chr6.4:59788170-59788189 MS.gene042955:intron 35.0%
CATTGGATACAATTGATGGA+GGG - chr6.4:59785712-59785731 MS.gene042955:intron 35.0%
CGGATTCAAATATACCAAGT+CGG + chr6.4:59786493-59786512 None:intergenic 35.0%
CTCCTATTTACAATTCTCCA+TGG - chr6.4:59788412-59788431 MS.gene042955:CDS 35.0%
CTTAATGTACTACCAGGATT+TGG - chr6.4:59786783-59786802 MS.gene042955:intron 35.0%
CTTCTTAATTCCTTCCTCAA+TGG + chr6.4:59788172-59788191 None:intergenic 35.0%
GAAAAATGGAGGGTTTATTG+TGG - chr6.4:59785434-59785453 MS.gene042955:intron 35.0%
GAGCAAAGATTATGGTGAAA+TGG - chr6.4:59785652-59785671 MS.gene042955:intron 35.0%
GCAAAAAAAAGTGATGAGAG+AGG + chr6.4:59785996-59786015 None:intergenic 35.0%
GTAATCACTTCTTCTGTTCT+TGG + chr6.4:59784368-59784387 None:intergenic 35.0%
GTTCCTTAATTCATAGCATG+CGG - chr6.4:59786080-59786099 MS.gene042955:CDS 35.0%
GTTTCATAATTCATCTAGGC+TGG - chr6.4:59786744-59786763 MS.gene042955:intron 35.0%
TATACCTTGATGGAACCTAT+TGG - chr6.4:59785858-59785877 MS.gene042955:CDS 35.0%
TCACGGATACATTATCATAC+GGG - chr6.4:59786379-59786398 MS.gene042955:intron 35.0%
TCATCTTATACCCTCCAAAA+GGG + chr6.4:59788326-59788345 None:intergenic 35.0%
TCTTCACATGTATACCTTGA+TGG - chr6.4:59785848-59785867 MS.gene042955:CDS 35.0%
TGACCGACACTTTATATTGA+AGG + chr6.4:59788035-59788054 None:intergenic 35.0%
TGTATGATCTTGTGACTTCA+GGG - chr6.4:59786309-59786328 MS.gene042955:intron 35.0%
TTAGGAATTACGGTGAGTAT+TGG - chr6.4:59784997-59785016 MS.gene042955:CDS 35.0%
TTCCAACATTGGTGTATGTT+TGG - chr6.4:59784544-59784563 MS.gene042955:CDS 35.0%
TTCCTTAATTCATAGCATGC+GGG - chr6.4:59786081-59786100 MS.gene042955:CDS 35.0%
TTCGATCCTAAAGTTCAACA+AGG - chr6.4:59787308-59787327 MS.gene042955:intron 35.0%
TTGGACTGTCCAATTTAGAT+AGG - chr6.4:59786455-59786474 MS.gene042955:intron 35.0%
TTGTATGATCTTGTGACTTC+AGG - chr6.4:59786308-59786327 MS.gene042955:intron 35.0%
TTGTTGGACACATTATACCT+TGG - chr6.4:59785883-59785902 MS.gene042955:CDS 35.0%
TTTACAGGTTCAACTGAAAC+AGG - chr6.4:59786951-59786970 MS.gene042955:intron 35.0%
TTTCATCAATGGAGAATTCG+TGG - chr6.4:59783441-59783460 MS.gene042955:CDS 35.0%
! ATAGGGTACCCTAAAAAGTT+TGG + chr6.4:59785397-59785416 None:intergenic 35.0%
! ATTTTCTTTGCAGACGAGTA+AGG - chr6.4:59787472-59787491 MS.gene042955:intron 35.0%
! CTAGATGTTTTGTCCAAGAA+GGG - chr6.4:59787222-59787241 MS.gene042955:intron 35.0%
! GTTTTACAGGTCAGTTTTAC+AGG - chr6.4:59786936-59786955 MS.gene042955:intron 35.0%
! TCTAGATGTTTTGTCCAAGA+AGG - chr6.4:59787221-59787240 MS.gene042955:intron 35.0%
!! AACTTAGAAAGTGCCATAAC+AGG + chr6.4:59787759-59787778 None:intergenic 35.0%
!! AAGCATTTGATAATGGTCCA+TGG - chr6.4:59784444-59784463 MS.gene042955:intron 35.0%
!! ATATTGATTGCCCTTTTGGA+GGG - chr6.4:59788313-59788332 MS.gene042955:intron 35.0%
!! CTCTTGGTTCTGTTCAATTA+GGG + chr6.4:59785682-59785701 None:intergenic 35.0%
!! GAGAAGTGTTCAAAACTTCT+AGG - chr6.4:59785823-59785842 MS.gene042955:CDS 35.0%
!! GCAAGAGAAGCATTTGATAA+TGG - chr6.4:59784437-59784456 MS.gene042955:intron 35.0%
!! GTTGAACTTTAGGATCGAAA+GGG + chr6.4:59787307-59787326 None:intergenic 35.0%
!! TGAGAAGAAAGTGCTTGAAA+AGG - chr6.4:59787259-59787278 MS.gene042955:intron 35.0%
!! TGTTGAACTTTAGGATCGAA+AGG + chr6.4:59787308-59787327 None:intergenic 35.0%
!! TTTGGTAGCTTCTGCTATTT+TGG + chr6.4:59784390-59784409 None:intergenic 35.0%
!!! CTTTTTAGGGTACCCTATTT+TGG - chr6.4:59785399-59785418 MS.gene042955:intron 35.0%
AACACCAATAGGTTCCATCA+AGG + chr6.4:59785865-59785884 None:intergenic 40.0%
AAGGTGAAAAATTGGGTCGT+TGG - chr6.4:59787278-59787297 MS.gene042955:intron 40.0%
AGATTTGAACTTACAGCACC+AGG + chr6.4:59784479-59784498 None:intergenic 40.0%
AGGAGCCACATTATTAACTG+GGG - chr6.4:59787541-59787560 MS.gene042955:intron 40.0%
AGTACATTAAGCACTCCATC+TGG + chr6.4:59786774-59786793 None:intergenic 40.0%
ATGGAGGGAAACTATACAGT+TGG - chr6.4:59785727-59785746 MS.gene042955:intron 40.0%
ATGTGTCCAACAACACCAAT+AGG + chr6.4:59785876-59785895 None:intergenic 40.0%
CAATTCGTGCAGGTATCATT+TGG - chr6.4:59788268-59788287 MS.gene042955:intron 40.0%
CCAGATCATCGTACTAAGAT+AGG + chr6.4:59786285-59786304 None:intergenic 40.0%
CCTAATTGAACAGAACCAAG+AGG - chr6.4:59785680-59785699 MS.gene042955:intron 40.0%
CCTATCTTAGTACGATGATC+TGG - chr6.4:59786282-59786301 MS.gene042955:intron 40.0%
CTCATCTTATACCCTCCAAA+AGG + chr6.4:59788327-59788346 None:intergenic 40.0%
CTTACCCCCAGTTAATAATG+TGG + chr6.4:59787549-59787568 None:intergenic 40.0%
GAAGGAGCCACATTATTAAC+TGG - chr6.4:59787539-59787558 MS.gene042955:intron 40.0%
GCATTGGATACAATTGATGG+AGG - chr6.4:59785711-59785730 MS.gene042955:intron 40.0%
GCTGTTGATCTTGCTCTATT+TGG - chr6.4:59787080-59787099 MS.gene042955:intron 40.0%
GGCATAGTAACGTAGGATAT+TGG + chr6.4:59785781-59785800 None:intergenic 40.0%
GGGTATAAGATGAGTGGATA+TGG - chr6.4:59788333-59788352 MS.gene042955:intron 40.0%
GGTACCCTAAAAAGTTTGGA+GGG + chr6.4:59785393-59785412 None:intergenic 40.0%
GTACATTAAGCACTCCATCT+GGG + chr6.4:59786773-59786792 None:intergenic 40.0%
GTATGATCTTGTGACTTCAG+GGG - chr6.4:59786310-59786329 MS.gene042955:intron 40.0%
GTGAAGTGATTTACTCCCTT+TGG + chr6.4:59784898-59784917 None:intergenic 40.0%
TATTGAAGGACCATTGAGGA+AGG - chr6.4:59788159-59788178 MS.gene042955:intron 40.0%
TCCTTAATTCATAGCATGCG+GGG - chr6.4:59786082-59786101 MS.gene042955:CDS 40.0%
TGCGTGACTTATCCTTACTT+GGG + chr6.4:59787336-59787355 None:intergenic 40.0%
TTGCGTGACTTATCCTTACT+TGG + chr6.4:59787337-59787356 None:intergenic 40.0%
! AGCAATGAGCAATTTGAAGC+CGG - chr6.4:59786995-59787014 MS.gene042955:intron 40.0%
! CATTTTCGCCATCTTAGTCA+AGG - chr6.4:59787801-59787820 MS.gene042955:intron 40.0%
! GCAGCATTGGATACAATTGA+TGG - chr6.4:59785708-59785727 MS.gene042955:intron 40.0%
! TTTGGAGGGTATAAGATGAG+TGG - chr6.4:59788327-59788346 MS.gene042955:intron 40.0%
! TTTTGCTCATCTTGCTAAGG+AGG - chr6.4:59786010-59786029 MS.gene042955:CDS 40.0%
!! ACTCACAGTATTGACACATG+CGG + chr6.4:59787992-59788011 None:intergenic 40.0%
!! ATGGAACCTATTGGTGTTGT+TGG - chr6.4:59785867-59785886 MS.gene042955:CDS 40.0%
!! CCTCTTGGTTCTGTTCAATT+AGG + chr6.4:59785683-59785702 None:intergenic 40.0%
!! GATATTGATTGCCCTTTTGG+AGG - chr6.4:59788312-59788331 MS.gene042955:intron 40.0%
AAGCCGGTATCGCTTGAATT+AGG - chr6.4:59787011-59787030 MS.gene042955:intron 45.0%
ACCAAATATGGCTTAGCAGC+AGG - chr6.4:59788201-59788220 MS.gene042955:intron 45.0%
ACCCCGCATGCTATGAATTA+AGG + chr6.4:59786086-59786105 None:intergenic 45.0%
ACCCTAAAAAGTTTGGAGGG+TGG + chr6.4:59785390-59785409 None:intergenic 45.0%
ATTAACTGGGGGTAAGCAAG+TGG - chr6.4:59787553-59787572 MS.gene042955:intron 45.0%
CCAAATATGGCTTAGCAGCA+GGG - chr6.4:59788202-59788221 MS.gene042955:intron 45.0%
CCAAGAGGAAATAGCAGCAT+TGG - chr6.4:59785695-59785714 MS.gene042955:intron 45.0%
CCCTAAAAAGTTTGGAGGGT+GGG + chr6.4:59785389-59785408 None:intergenic 45.0%
CCTCCTAATTCAAGCGATAC+CGG + chr6.4:59787017-59787036 None:intergenic 45.0%
CTCATCTTGCTAAGGAGGTA+AGG - chr6.4:59786015-59786034 MS.gene042955:CDS 45.0%
CTCGCATATGGACATAGATG+CGG - chr6.4:59786830-59786849 MS.gene042955:intron 45.0%
GAATTCGTGGACTCAGTTTC+AGG - chr6.4:59783454-59783473 MS.gene042955:CDS 45.0%
GCGTGACTTATCCTTACTTG+GGG + chr6.4:59787335-59787354 None:intergenic 45.0%
GCTCTCCTATCTTCATTGGA+CGG + chr6.4:59786167-59786186 None:intergenic 45.0%
GGAGCCACATTATTAACTGG+GGG - chr6.4:59787542-59787561 MS.gene042955:intron 45.0%
GGGTACCCTAAAAAGTTTGG+AGG + chr6.4:59785394-59785413 None:intergenic 45.0%
GGTAAGCAAGTGGGAAACAA+AGG - chr6.4:59787563-59787582 MS.gene042955:intron 45.0%
GGTCAATAACCACGATGTTG+CGG - chr6.4:59788050-59788069 MS.gene042955:intron 45.0%
GTGAGCTCTCCTATCTTCAT+TGG + chr6.4:59786171-59786190 None:intergenic 45.0%
GTTTCAAGGTCAATTCGTGC+AGG - chr6.4:59788258-59788277 MS.gene042955:intron 45.0%
TGCTGCAATAACCTCGCATA+TGG - chr6.4:59786818-59786837 MS.gene042955:intron 45.0%
TGGGGTCCTTGTTGAACTTT+AGG + chr6.4:59787317-59787336 None:intergenic 45.0%
TTAACTGGGGGTAAGCAAGT+GGG - chr6.4:59787554-59787573 MS.gene042955:intron 45.0%
TTCAACAAGGACCCCAAGTA+AGG - chr6.4:59787321-59787340 MS.gene042955:intron 45.0%
TTGGACCGTCCAATGAAGAT+AGG - chr6.4:59786159-59786178 MS.gene042955:intron 45.0%
! ACGTAGGATATTGGCTGCTT+CGG + chr6.4:59785772-59785791 None:intergenic 45.0%
! ATGAACTTTATCGGCTGCAC+CGG + chr6.4:59785802-59785821 None:intergenic 45.0%
! CCCACCCTCCAAACTTTTTA+GGG - chr6.4:59785386-59785405 MS.gene042955:intron 45.0%
! GGAGTGCTTAATGTACTACC+AGG - chr6.4:59786777-59786796 MS.gene042955:intron 45.0%
! TCCCACCCTCCAAACTTTTT+AGG - chr6.4:59785385-59785404 MS.gene042955:intron 45.0%
! TTTGGCTGCTGGTTGTACTA+TGG - chr6.4:59785947-59785966 MS.gene042955:CDS 45.0%
!! CCAATGCTGCTATTTCCTCT+TGG + chr6.4:59785698-59785717 None:intergenic 45.0%
!!! AATATAATTTTTTTTTTTGA+GGG - chr6.4:59783855-59783874 MS.gene042955:intron 5.0%
!!! AATTTTTATTTTGAAAAAAT+TGG + chr6.4:59784232-59784251 None:intergenic 5.0%
!!! ATTTTTATTTTGAAAAAATT+GGG + chr6.4:59784231-59784250 None:intergenic 5.0%
!!! TGAAATTTTTTATTTTTTTA+AGG + chr6.4:59783565-59783584 None:intergenic 5.0%
ATCTAGGCTGGTATCCCAGA+TGG - chr6.4:59786756-59786775 MS.gene042955:intron 50.0%
CCCTGCTGCTAAGCCATATT+TGG + chr6.4:59788205-59788224 None:intergenic 50.0%
CCGGTATCGCTTGAATTAGG+AGG - chr6.4:59787014-59787033 MS.gene042955:intron 50.0%
CGCATCTATGTCCATATGCG+AGG + chr6.4:59786832-59786851 None:intergenic 50.0%
GGATAGCTTACGTTCCGACT+TGG - chr6.4:59786476-59786495 MS.gene042955:intron 50.0%
GGTGCAGCCGATAAAGTTCA+TGG - chr6.4:59785801-59785820 MS.gene042955:CDS 50.0%
GTACAACCAGCAGCCAAACA+AGG + chr6.4:59785945-59785964 None:intergenic 50.0%
GTGTTTGCTCAGCAGGCTTA+AGG + chr6.4:59785974-59785993 None:intergenic 50.0%
TCGCGTGCCCTACAACATTT+CGG + chr6.4:59785497-59785516 None:intergenic 50.0%
TGCTAAGGCTGCTCCTTGTT+TGG - chr6.4:59785929-59785948 MS.gene042955:CDS 50.0%
! ACTACCAGGATTTGGCTCAG+AGG - chr6.4:59786791-59786810 MS.gene042955:intron 50.0%
! CGTAGGATATTGGCTGCTTC+GGG + chr6.4:59785771-59785790 None:intergenic 50.0%
AACAGGCCGTCGAGTAATGC+AGG - chr6.4:59786968-59786987 MS.gene042955:intron 55.0%
ATGATTGCCGTGACTGCAGG+GGG - chr6.4:59786562-59786581 MS.gene042955:intron 55.0%
CATGATTGCCGTGACTGCAG+GGG - chr6.4:59786561-59786580 MS.gene042955:intron 55.0%
CGATGTTGCGGCCCAAATTC+CGG - chr6.4:59788062-59788081 MS.gene042955:intron 55.0%
CTGCAGCCTGCATTACTCGA+CGG + chr6.4:59786977-59786996 None:intergenic 55.0%
CTTACAGCACCAGGCATACG+TGG + chr6.4:59784470-59784489 None:intergenic 55.0%
GAATTTGGGCCGCAACATCG+TGG + chr6.4:59788062-59788081 None:intergenic 55.0%
GCATGATTGCCGTGACTGCA+GGG - chr6.4:59786560-59786579 MS.gene042955:intron 55.0%
GGAGAGCTCACATTCCGACT+TGG - chr6.4:59786180-59786199 MS.gene042955:intron 55.0%
TGCATGATTGCCGTGACTGC+AGG - chr6.4:59786559-59786578 MS.gene042955:intron 55.0%
! CTGCACCGGCATAGTAACGT+AGG + chr6.4:59785788-59785807 None:intergenic 55.0%
!! GAGAGAGGTGTTTGCTCAGC+AGG + chr6.4:59785981-59786000 None:intergenic 55.0%
CCAGCCTCTGAGCCAAATCC+TGG + chr6.4:59786798-59786817 None:intergenic 60.0%
GCATGCGGGGTGTATCTTCG+AGG - chr6.4:59786095-59786114 MS.gene042955:CDS 60.0%
TCAGATCCCCCCTGCAGTCA+CGG + chr6.4:59786572-59786591 None:intergenic 60.0%
TGATTGCCGTGACTGCAGGG+GGG - chr6.4:59786563-59786582 MS.gene042955:intron 60.0%
! CCAGGATTTGGCTCAGAGGC+TGG - chr6.4:59786795-59786814 MS.gene042955:intron 60.0%
! GCTGCTCCTTGTTTGGCTGC+TGG - chr6.4:59785936-59785955 MS.gene042955:CDS 60.0%
GCACCAGGCATACGTGGCCA+TGG + chr6.4:59784464-59784483 None:intergenic 65.0%
GGTCCATGGCCACGTATGCC+TGG - chr6.4:59784458-59784477 MS.gene042955:intron 65.0%
TGTAGGGCACGCGAGAAGCG+CGG - chr6.4:59785503-59785522 MS.gene042955:intron 65.0%
! ACGCGAGAAGCGCGGAGTGT+GGG - chr6.4:59785511-59785530 MS.gene042955:intron 65.0%
! CACGCGAGAAGCGCGGAGTG+TGG - chr6.4:59785510-59785529 MS.gene042955:intron 70.0%


Chromosome Type Strat End Strand Name
chr6.4 gene 59783379 59788440 59783379 ID=MS.gene042955
chr6.4 mRNA 59783379 59788440 59783379 ID=MS.gene042955.t1;Parent=MS.gene042955
chr6.4 exon 59788344 59788440 59788344 ID=MS.gene042955.t1.exon1;Parent=MS.gene042955.t1
chr6.4 CDS 59788344 59788440 59788344 ID=cds.MS.gene042955.t1;Parent=MS.gene042955.t1
chr6.4 exon 59787335 59787477 59787335 ID=MS.gene042955.t1.exon2;Parent=MS.gene042955.t1
chr6.4 CDS 59787335 59787477 59787335 ID=cds.MS.gene042955.t1;Parent=MS.gene042955.t1
chr6.4 exon 59785788 59786171 59785788 ID=MS.gene042955.t1.exon3;Parent=MS.gene042955.t1
chr6.4 CDS 59785788 59786171 59785788 ID=cds.MS.gene042955.t1;Parent=MS.gene042955.t1
chr6.4 exon 59784968 59785057 59784968 ID=MS.gene042955.t1.exon4;Parent=MS.gene042955.t1
chr6.4 CDS 59784968 59785057 59784968 ID=cds.MS.gene042955.t1;Parent=MS.gene042955.t1
chr6.4 exon 59784701 59784874 59784701 ID=MS.gene042955.t1.exon5;Parent=MS.gene042955.t1
chr6.4 CDS 59784701 59784874 59784701 ID=cds.MS.gene042955.t1;Parent=MS.gene042955.t1
chr6.4 exon 59784482 59784619 59784482 ID=MS.gene042955.t1.exon6;Parent=MS.gene042955.t1
chr6.4 CDS 59784482 59784619 59784482 ID=cds.MS.gene042955.t1;Parent=MS.gene042955.t1
chr6.4 exon 59784197 59784334 59784197 ID=MS.gene042955.t1.exon7;Parent=MS.gene042955.t1
chr6.4 CDS 59784197 59784334 59784197 ID=cds.MS.gene042955.t1;Parent=MS.gene042955.t1
chr6.4 exon 59784038 59784099 59784038 ID=MS.gene042955.t1.exon8;Parent=MS.gene042955.t1
chr6.4 CDS 59784038 59784099 59784038 ID=cds.MS.gene042955.t1;Parent=MS.gene042955.t1
chr6.4 exon 59783379 59783652 59783379 ID=MS.gene042955.t1.exon9;Parent=MS.gene042955.t1
chr6.4 CDS 59783379 59783652 59783379 ID=cds.MS.gene042955.t1;Parent=MS.gene042955.t1
Gene Sequence

>MS.gene042955

ATGGCAAATCACAGCATCTTAGACTCCTTTGTAAAGATTCCAACTATAAAGTTTAAAAAGCTTTTCATCAATGGAGAATTCGTGGACTCAGTTTCAGGTTTTTTTCAATTAGTTTCATACATATTTGCCTCAATTCTTTTTAATTTTCGTACAATATTTACCTCACTTAATTGACATTTCATGCCTTAAAAAAATAAAAAATTTCATACATGCTAAGTAAATACAACTCAAATTACAAGTGCAAGGATATTTGATATCTTGAGGCGCAAGTTTAAACTTACAGTTCTCTATTTTTCTACATGTAATATGTGAGATTTTCACAATGTGACCATTTGACAAAAAATAATTCATACCTTTGTGCGGTGTGTATTTTTTGCATTGTTTCCTAACTAAATATATAAAGTAAGAGTTTAAAGATTTGAACCAAAAAAAAAGTTTAAAGATTATACGTTGACAGATATGTTTTTATAAGTGAGAATATAATTTTTTTTTTTGAGGGAAATATAATTCTTTTATATGGTCATTCAATCATATATTATCATATAGATATTTGTAGATTTTTTTTAAGATATGTTTATTACAAAGTAACATAGTGTTCATGATGTTGGATTGAATAAATGTGTAAAAAGTCATAAATGAAAATATATAATTGTATAGTCGTTGATGAGAATTTATCCATGATATATACAGAGATCAATTATCAAAATTCAATTTGGATACTATATTTTAGCACCAAAAATATGCATTCCATTTCCACTATTAGAAAAAATGACATTGGACTATATCTCAACTTGTGATATAATTTTTGGGTGTATTCTTGTCAAATCATAGATATATAGGGGTAATGGTCCCAATTTTTTCAAAATAAAAATTTAAAATTTAAATTGACTTTTATGGTTACAAAGTTTTAATTGACTTGATATACTTATATGCATATTGGATTTTTTGTTGAAATAAAAAAAGGAAAAACTTTTGAGACTGTTGATCCAAGAACAGAAGAAGTGATTACCAAAATAGCAGAAGCTACCAAAGAAGATGTTGATATTGCTGTGAAAGCTGCAAGAGAAGCATTTGATAATGGTCCATGGCCACGTATGCCTGGTGCTGTAAGTTCAAATCTTCACCTATTTTAAAGTTCGTGTAACAACATACTCTAATACTTTTTTTCCAACATTGGTGTATGTTTGGTTTTAATTTTGAATGTGACAAAATTAATTACGTAAGTATAGAATTGATTTTTGACATTTTTGGTTGTTCTCGGATAATTGATTTTGCTTGTAGAACAGATTCTAACTTATAATTTGTAGTTTTTGACGCAACAAGATTTTTCCATTCAAATTTATTGTTCAAATCATTTCTAAGTGAACGTATTCAAACATACTCCCTCTGATTACATTTATAAATAATTTTTGTTTTTTCAAATTCATTAAATAACTGATGTATCTGGACTATATTATAATCAAGATGCATCAGTTATTTAATGAATCTGAAAAAGCAAAATTGCTTATAAATATCACCAAAGGGAGTAAATCACTTCACATTCAACTTATTTTAACTAAAATCAATTTCACAAAATAATTTCATGTGGGTCCCACTTCTATAAGAGATTGAGTTTATGTTAGGAATTACGGTGAGTATTGGTAGCACCAACCTTAACAATGACAATTTTACAACCGTTTTTGAGTAGATTTGATCTTCGTCCCTCGAAGCATAAAAAAACAAATTTGTGGAGTTTCTTGGTGAAAAGTTGCATTAGCAAGCATCATTCATAAATTACTCATTGAATACAAATATTTCATAAATTATTGCAAGGCTACTTTAATTTATTTAACTATTTTATATGAGTAGTCATCTAGTTGGTTTTTTTCTAAGGTGATCACAATAAAAGAGGAAACAAAATTTTGACATCCCTTTCAGAGTGTATAAGAAAAGTGATTATCGAGAAAGACAAAAAAAATGTAAGGAATGTATAAAATAAGTGGCTGTAGAAATATGTAATTTTCTTTTCCCACCCTCCAAACTTTTTAGGGTACCCTATTTTGGATTTTAAAATCAGAAAAATGGAGGGTTTATTGTGGGTTTCTGAACGTTTTTACACCTTTCGAATTATATAATCCGAAATGTTGTAGGGCACGCGAGAAGCGCGGAGTGTGGGAAAAGAAACTCGCAAAAAATAATGCCAACAAATTTTCACACAAAGAACTTAGCCAATGTTCTTAACTAGAAAGCAACATGCATTAATTTGATATGGTCATGAACTGTTTTATAGGAGAGAGCAAAGATTATGGTGAAATGGGCAACCCTAATTGAACAGAACCAAGAGGAAATAGCAGCATTGGATACAATTGATGGAGGGAAACTATACAGTTGGTGTAAGACAGTAGATGTACCCGAAGCAGCCAATATCCTACGTTACTATGCCGGTGCAGCCGATAAAGTTCATGGAGAAGTGTTCAAAACTTCTAGGAATCTTCACATGTATACCTTGATGGAACCTATTGGTGTTGTTGGACACATTATACCTTGGAATTTCCCAACTGTTATGTTCTTTGCTAAGGCTGCTCCTTGTTTGGCTGCTGGTTGTACTATGGTCCTTAAGCCTGCTGAGCAAACACCTCTCTCATCACTTTTTTTTGCTCATCTTGCTAAGGAGGTAAGGTTAAAGAAAATTTGTTGAGTTGGTTTTGAAAGATTTTTTATAGTTCCTTAATTCATAGCATGCGGGGTGTATCTTCGAGGAACTTGATTTGTTTTTGAAGGGAAATTCACAATCAAGCAATTTGGACCGTCCAATGAAGATAGGAGAGCTCACATTCCGACTTGGTATTTTGAATCTGATTTTCAAAGTCGGAACGTGAATAGTCCTATAACACCCTGATATAATTTTCTAGAATCTTACAAGTCCTATCTTAGTACGATGATCTGGACTTTGTATGATCTTGTGACTTCAGGGGATCTGAATCCTTTGTATCTAATGCGTTTATGTTTAGTTTGTTAGCATCACGGATACATTATCATACGGGATATCTTCACAGATTTTGATTCCTTGTAGTAAGAGAATTCATAGTCAATCAGTTTGGACTGTCCAATTTAGATAGGATAGCTTACGTTCCGACTTGGTATATTTGAATCCGATTTTGAAAGTCGGAAAGTGAAGTCCAATCTTAATATGATGGCAAATGCATGATTGCCGTGACTGCAGGGGGGATCTGAACCCTAAATCTTAGTATCTAAGGTGTTTATGTCTAGTTTATTAGCATCACCAATACATGGATGAAAATATATTAGCATATGTTCAATTTAAGAAAACTTCAACCTATTTCTATTTTTGATATTTTTACTACTAATTACGAAAAAGTCACCATGTTTCATAATTCATCTAGGCTGGTATCCCAGATGGAGTGCTTAATGTACTACCAGGATTTGGCTCAGAGGCTGGTGCTGCAATAACCTCGCATATGGACATAGATGCGGTAATTTTTTCGTCAAAACGTTTTATATCATTGATTCCATTAAAGATTCACTCAAACTGGAATTTCAACTACTAATTTTTTCATGTTTTACAGGTCAGTTTTACAGGTTCAACTGAAACAGGCCGTCGAGTAATGCAGGCTGCAGCAATGAGCAATTTGAAGCCGGTATCGCTTGAATTAGGAGGCAAGTCGCCTGTTTTAATTTTTGATGATGCTGATGTTGATAAAGCTGTTGATCTTGCTCTATTTGGTATCCTACACAATAAGGTATATTTTTCTTCGAGGAAAATTTGGTAACATAAAAAAAGAACAAAGACTTGTTACTTAGGTAACTCTTGTAATTTTCAGGGAGAAATATGTGTTGCATATTCTAGATGTTTTGTCCAAGAAGGGATTTACGATGAATTTGAGAAGAAAGTGCTTGAAAAGGTGAAAAATTGGGTCGTTGGTGACCCTTTCGATCCTAAAGTTCAACAAGGACCCCAAGTAAGGATAAGTCACGCAATTACACATCTAGACCGTCTAAGCTCAAATCAATGATCAAGATCATTTGAAATGGATCTACGCACTTTATAATTAGAATCGGAAGGAAATTGTTACCAACATCTCATTTGCACATGATTTTCTTTGCAGACGAGTAAGGCGCAATTTGATAAAATTCTTTCCTATATTAAACATGGAAAGAATGAAGGAGCCACATTATTAACTGGGGGTAAGCAAGTGGGAAACAAAGGATACTACATTGAACCTACTATTTTTACCAATGTTAAGGTATATTTCAACTCTAACAAGAAAAATGAAACCTTATGTCATTCTCATAACTGAACAATAGAACTAATTTTCATTTTTTTTTTGAAAATTTGTGTAGGATGACATGCTAATAGCACAAGATGAAATATTTGGACCTGTTATGGCACTTTCTAAGTTCAAGTAAGTATAATTTATATTTCATTTTCGCCATCTTAGTCAAGGTTTTAAATTAGAGTCGCAATAGTATCAAAATTTTAAATATCAAAGAAAATCGTAGTCAAATATAGTTCAAGTTAAAGTCTCAGAGACATATAAAACCACCACACTTTTATATTGAAGACATGTCTGATGCCCGATAACACTAACACAATATTGTCGTGCACGTAACCGCATGTGTCAATACTGTGAGTGTTATCAGACATCAGACATGCCTTCAATATAAAGTGTCGGTCAATAACCACGATGTTGCGGCCCAAATTCCGGTCACAAACTTTTTTTAAACCCTGAAATTAGTTTTAAAAGATGTTTATGAATGTGCACCGAAATGTTGAATTAAATATTGAAGGACCATTGAGGAAGGAATTAAGAAGGCCAACAATACCAAATATGGCTTAGCAGCAGGGATTGTGACAAAGAATTTGGATATTGCAAACACTGTTTCAAGGTCAATTCGTGCAGGTATCATTTGGATCAATTGCTATTTTGCCTTTGATATTGATTGCCCTTTTGGAGGGTATAAGATGAGTGGATATGGAAGAGATTATGGATTGGAAGCACTTCACAAGTATCTTCAAGTTAAATCTGTTGCAACTCCTATTTACAATTCTCCATGGCTTTGA
Protein sequence

>MS.gene042955.t1

MANHSILDSFVKIPTIKFKKLFINGEFVDSVSGKTFETVDPRTEEVITKIAEATKEDVDIAVKAAREAFDNGPWPRMPGAERAKIMVKWATLIEQNQEEIAALDTIDGGKLYSWCKTVDVPEAANILRYYAGAADKVHGEVFKTSRNLHMYTLMEPIGVVGHIIPWNFPTVMFFAKAAPCLAAGCTMVLKPAEQTPLSSLFFAHLAKEAGIPDGVLNVLPGFGSEAGAAITSHMDIDAVSFTGSTETGRRVMQAAAMSNLKPVSLELGGKSPVLIFDDADVDKAVDLALFGILHNKGEICVAYSRCFVQEGIYDEFEKKVLEKVKNWVVGDPFDPKVQQGPQTSKAQFDKILSYIKHGKNEGATLLTGGKQVGNKGYYIEPTIFTNVKDDMLIAQDEIFGPVMALSKFKTIEEGIKKANNTKYGLAAGIVTKNLDIANTVSRSIRAGIIWINCYFAFDIDCPFGGYKMSGYGRDYGLEALHKYLQVKSVATPIYNSPWL